##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 23:22:12 PST 2014",Epoch=1389770532070,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/BC187/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BC187 chrI 90 . A C 90.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.017;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;MQRankSum=-0.154;QD=1.22;ReadPosRankSum=2.005;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:3,70:74:15:123,15,0 chrI 93 . T C 132.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.159;DP=80;Dels=0.00;FS=9.142;HaplotypeScore=7.5092;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;MQRankSum=-0.875;QD=1.65;ReadPosRankSum=2.286;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:5,75:80:21:165,21,0 chrI 100 . G A 187.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.091;DP=83;Dels=0.00;FS=25.319;HaplotypeScore=10.4624;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=0;MQRankSum=-0.239;QD=2.25;ReadPosRankSum=2.325;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:5,78:83:27:220,27,0 chrI 101 . G A 194.01 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.4690;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=0;QD=2.34;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,80:83:27:227,27,0 chrI 114 . T C 207 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.042;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5452;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=0;MQRankSum=-0.536;QD=2.09;ReadPosRankSum=-0.124;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:3,95:99:30:240,30,0 chrI 115 . C A 258 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;DP=99;Dels=0.00;FS=15.051;HaplotypeScore=7.5452;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=0;MQRankSum=0.217;QD=2.61;ReadPosRankSum=1.696;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,95:99:36:291,36,0 chrI 119 . T C 250 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DP=105;Dels=0.00;FS=9.546;HaplotypeScore=6.6790;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=0;MQRankSum=-0.326;QD=2.38;ReadPosRankSum=-0.075;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:4,101:105:36:283,36,0 chrI 192 . C T 39.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=2.22;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:72,9,0 chrI 270 . C T 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;MQRankSum=-0.342;QD=15.51;ReadPosRankSum=0.205;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2391,279,0 chrI 275 . C T 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.299;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;MQRankSum=0.898;QD=14.50;ReadPosRankSum=2.636;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:2252,248,0 chrI 305 . C G 2307 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;QD=14.79;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2340,284,0 chrI 328 . C T 889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=24.7437;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=0;MQRankSum=0.010;QD=9.66;ReadPosRankSum=-0.551;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:4,84:90:96:922,96,0 chrI 349 . C T 194 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=17.3121;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=5.24;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:227,30,0 chrI 356 . G A 59.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.157;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=20.8290;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;MQRankSum=1.528;QD=2.20;ReadPosRankSum=0.417;SB=-5.172e-01 GT:AD:DP:GQ:PL 1/1:2,25:27:12:92,12,0 chrI 358 . G A 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=16.9951;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=2.71;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:92,12,0 chrI 402 . C T 333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.950;DP=42;Dels=0.00;FS=5.530;HaplotypeScore=31.3025;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;MQRankSum=-0.664;QD=7.93;ReadPosRankSum=-2.421;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:4,38:42:39:366,39,0 chrI 404 . C T 275.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=42;Dels=0.00;FS=112.214;HaplotypeScore=39.0640;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;MQRankSum=2.577;QD=6.55;ReadPosRankSum=-0.635;SB=-1.763e-01 GT:AD:DP:GQ:PL 1/1:26,16:42:17:308,17,0 chrI 405 . A T 192.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.958;DP=41;Dels=0.00;FS=110.132;HaplotypeScore=39.0640;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;MQRankSum=3.488;QD=4.70;ReadPosRankSum=-0.521;SB=-6.463e-01 GT:AD:DP:GQ:PL 1/1:25,16:41:11:225,11,0 chrI 419 . T A 389 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=17.4516;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=9.49;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,35:41:45:422,45,0 chrI 421 . T G 382 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.710;DP=41;Dels=0.00;FS=32.934;HaplotypeScore=27.3487;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;MQRankSum=3.863;QD=9.32;ReadPosRankSum=-0.884;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:7,34:41:48:415,48,0 chrI 422 . A G 375 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=27.3487;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=9.15;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,32:41:45:408,45,0 chrI 424 . G A 395 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=20.5888;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=9.63;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:428,48,0 chrI 452 . C T 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.759;DP=48;Dels=0.00;FS=56.417;HaplotypeScore=39.5520;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=3.258;QD=10.25;ReadPosRankSum=-0.608;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:6,42:48:66:525,66,0 chrI 469 . A G 303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=36;Dels=0.00;FS=35.941;HaplotypeScore=5.8128;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;MQRankSum=1.988;QD=8.42;ReadPosRankSum=2.743;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,32:36:39:336,39,0 chrI 483 . C T 260.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.378;DP=37;Dels=0.03;FS=47.702;HaplotypeScore=13.5066;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;MQRankSum=1.737;QD=7.03;ReadPosRankSum=1.737;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:4,32:36:17:293,17,0 chrI 485 . T C 280 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=12.5108;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=1;QD=7.78;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:36:313,36,0 chrI 487 . A G 281 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025;DP=36;Dels=0.00;FS=9.484;HaplotypeScore=11.5443;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=1;MQRankSum=1.670;QD=7.81;ReadPosRankSum=1.315;SB=-1.601e+01 GT:AD:DP:GQ:PL 1/1:3,33:36:36:314,36,0 chrI 519 . C T 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DP=51;Dels=0.00;FS=16.906;HaplotypeScore=16.3525;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=8;MQRankSum=0.842;QD=1.75;ReadPosRankSum=0.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,17:51:99:119,0,167 chrI 530 . A G 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DP=55;Dels=0.00;FS=44.728;HaplotypeScore=9.3148;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=12;MQRankSum=3.811;QD=2.29;ReadPosRankSum=0.791;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:29,25:55:56:156,0,56 chrI 534 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DP=56;Dels=0.00;FS=21.174;HaplotypeScore=9.3148;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=13;MQRankSum=-0.894;QD=0.43;ReadPosRankSum=1.231;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:38,18:56:54:54,0,153 chrI 588 . C A 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DP=58;Dels=0.00;FS=9.533;HaplotypeScore=12.4098;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=14;MQRankSum=1.312;QD=4.07;ReadPosRankSum=-1.411;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:16,42:58:31:266,0,31 chrI 595 . C G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=52;Dels=0.00;FS=19.046;HaplotypeScore=14.6895;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=12;MQRankSum=0.470;QD=0.69;ReadPosRankSum=4.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,8:52:66:66,0,182 chrI 610 . G A 140.03 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=10;QD=4.83;SB=-2.203e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:24:173,24,0 chrI 622 . T C 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=21;Dels=0.00;FS=8.921;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=13.03;MQ0=8;MQRankSum=-0.212;QD=2.43;ReadPosRankSum=-0.533;SB=-5.152e-03 GT:AD:DP:GQ:PL 0/1:13,8:21:60:81,0,60 chrI 623 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DP=20;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.17;MQ0=8;MQRankSum=-0.929;QD=0.57;ReadPosRankSum=1.932;SB=-1.400e+01 GT:AD:DP:GQ:PL 0/1:10,10:20:41:41,0,84 chrI 650 . C A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=4;MQRankSum=0.741;QD=2.79;ReadPosRankSum=2.383;SB=-1.580e+01 GT:AD:DP:GQ:PL 0/1:6,8:14:25:69,0,25 chrI 658 . A G 42.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.50;MQ0=3;MQRankSum=1.380;QD=4.71;ReadPosRankSum=0.000;SB=-1.845e+01 GT:AD:DP:GQ:PL 0/1:3,6:9:7:72,0,7 chrI 681 . G T 55.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;DP=9;Dels=0.00;FS=6.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.77;MQ0=0;MQRankSum=1.159;QD=6.16;ReadPosRankSum=-2.219;SB=-1.545e+01 GT:AD:DP:GQ:PL 0/1:4,5:9:7:85,0,7 chrI 693 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=0;QD=2.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrI 700 . C T 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=9;Dels=0.00;FS=13.222;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=0;MQRankSum=0.729;QD=1.59;ReadPosRankSum=-1.881;SB=-1.357e+00 GT:AD:DP:GQ:PL 0/1:4,5:9:13:44,0,13 chrI 701 . C A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=5.00;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:77,9,0 chrI 737 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;DP=18;Dels=0.00;FS=3.140;HaplotypeScore=10.4287;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=0;MQRankSum=2.162;QD=1.32;ReadPosRankSum=-0.373;SB=-8.451e+01 GT:AD:DP:GQ:PL 1/1:2,15:18:6:55,6,0 chrI 738 . C G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=9.6401;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=0;QD=1.17;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:17:6:51,6,0 chrI 743 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=7.1601;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=0;QD=1.20;SB=-8.264e+01 GT:AD:DP:GQ:PL 1/1:0,15:19:6:54,6,0 chrI 801 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=9.7879;MLEAC=2;MLEAF=1.00;MQ=15.02;MQ0=0;QD=1.74;SB=-4.385e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:65,9,0 chrI 807 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=12.7392;MLEAC=2;MLEAF=1.00;MQ=14.90;MQ0=0;MQRankSum=2.017;QD=0.71;ReadPosRankSum=2.017;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:4,4:17:6:43,6,0 chrI 811 . G T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=7.7872;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=0;QD=1.32;SB=-4.395e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:65,9,0 chrI 827 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=0;QD=1.43;SB=-4.391e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:9:65,9,0 chrI 831 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=0;QD=0.67;SB=-4.398e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:9:65,9,0 chrI 836 . G T 95.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;DP=56;Dels=0.00;FS=14.472;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=0;MQRankSum=-0.681;QD=1.70;ReadPosRankSum=-1.361;SB=-2.047e+01 GT:AD:DP:GQ:PL 0/1:1,55:56:1:124,0,1 chrI 841 . A T 126.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;DP=66;Dels=0.00;FS=33.314;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=0;MQRankSum=0.206;QD=1.91;ReadPosRankSum=-1.777;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:2,64:66:16:156,0,16 chrI 848 . C T 287 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=0;QD=3.68;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:39:320,39,0 chrI 855 . G A 268.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.050;DP=88;Dels=0.00;FS=35.830;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=0;MQRankSum=0.014;QD=3.05;ReadPosRankSum=0.294;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:2,86:88:2:298,2,0 chrI 857 . A C 305.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.142;DP=88;Dels=0.00;FS=35.830;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=0;MQRankSum=0.798;QD=3.47;ReadPosRankSum=0.350;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:2,86:88:8:337,8,0 chrI 868 . A C 429 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.109;DP=111;Dels=0.00;FS=17.443;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;MQRankSum=0.421;QD=3.86;ReadPosRankSum=0.671;SB=-7.896e-03 GT:AD:DP:GQ:PL 1/1:1,110:111:38:462,38,0 chrI 869 . C T 516 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=111;Dels=0.00;FS=37.857;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;MQRankSum=0.920;QD=4.65;ReadPosRankSum=1.696;SB=-6.693e-03 GT:AD:DP:GQ:PL 1/1:2,109:111:47:549,47,0 chrI 876 . T C 553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.713;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7741;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;MQRankSum=-2.311;QD=4.25;ReadPosRankSum=4.723;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:8,122:130:69:586,69,0 chrI 878 . T C 554 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=134;Dels=0.00;FS=22.967;HaplotypeScore=10.1401;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;MQRankSum=0.089;QD=4.13;ReadPosRankSum=4.238;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:10,124:134:69:587,69,0 chrI 883 . G A 639.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DP=143;Dels=0.00;FS=37.544;HaplotypeScore=10.2468;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=0.644;QD=4.47;ReadPosRankSum=3.412;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:9,134:143:44:669,0,44 chrI 884 . A G 672.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DP=144;Dels=0.01;FS=51.224;HaplotypeScore=17.7502;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=0;MQRankSum=2.431;QD=4.67;ReadPosRankSum=4.027;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:9,134:143:44:702,0,44 chrI 890 . T C 730.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;DP=167;Dels=0.00;FS=48.177;HaplotypeScore=5.9039;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=2.851;QD=4.37;ReadPosRankSum=5.301;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,147:167:59:760,0,59 chrI 891 . C T 726.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.448;DP=167;Dels=0.00;FS=48.177;HaplotypeScore=5.9039;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=3.192;QD=4.35;ReadPosRankSum=5.203;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,147:167:99:756,0,127 chrI 899 . C T 811.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.873;DP=155;Dels=0.00;FS=49.113;HaplotypeScore=2.9906;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=4.041;QD=5.23;ReadPosRankSum=4.030;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,137:155:99:841,0,197 chrI 900 . A G 800.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=155;Dels=0.00;FS=49.113;HaplotypeScore=2.9906;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=4.426;QD=5.16;ReadPosRankSum=3.873;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,137:155:99:830,0,202 chrI 903 . G C 164.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DP=156;Dels=0.00;FS=58.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=-2.883;QD=1.05;ReadPosRankSum=-3.078;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:137,19:156:99:194,0,808 chrI 904 . G A 1345 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=8.62;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1378,153,0 chrI 906 . C T 700.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DP=156;Dels=0.00;FS=58.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=4.270;QD=4.49;ReadPosRankSum=2.666;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,137:156:99:730,0,205 chrI 907 . A T 711.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=156;Dels=0.00;FS=58.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=3.479;QD=4.56;ReadPosRankSum=2.325;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,137:156:99:741,0,208 chrI 908 . T C 625.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=156;Dels=0.00;FS=58.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=4.769;QD=4.01;ReadPosRankSum=1.951;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,137:156:99:655,0,204 chrI 917 . A G 607.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DP=166;Dels=0.00;FS=59.902;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=5.458;QD=3.66;ReadPosRankSum=-1.633;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,147:166:99:637,0,223 chrI 918 . T C 606.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DP=166;Dels=0.00;FS=59.902;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=5.092;QD=3.65;ReadPosRankSum=-1.988;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,147:166:99:636,0,205 chrI 920 . A T 563.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=166;Dels=0.00;FS=59.902;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=4.540;QD=3.39;ReadPosRankSum=-2.876;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,147:166:99:593,0,226 chrI 925 . T C 1115 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;MQRankSum=-1.682;QD=6.52;ReadPosRankSum=2.691;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:5,166:171:99:1148,135,0 chrI 929 . A C 1058 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=6.41;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,164:165:99:1091,132,0 chrI 937 . C T 514.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;DP=155;Dels=0.00;FS=46.661;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=0;MQRankSum=3.379;QD=3.32;ReadPosRankSum=-2.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,127:155:99:544,0,373 chrI 968 . C T 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.046;DP=92;Dels=0.00;FS=9.171;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=4.078;QD=1.74;ReadPosRankSum=0.193;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:32,60:92:99:190,0,481 chrI 970 . G A 151.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.816;DP=92;Dels=0.00;FS=9.171;HaplotypeScore=6.8636;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=3.382;QD=1.64;ReadPosRankSum=0.750;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:32,60:92:99:181,0,463 chrI 980 . A G 348.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=0;MQRankSum=-0.933;QD=8.29;ReadPosRankSum=1.466;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,38:42:51:381,51,0 chrI 981 . A C 376 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=0;QD=8.95;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:42:54:409,54,0 chrI 1025 . C T 1648 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=126;Dels=0.00;FS=6.782;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=20;MQRankSum=1.311;QD=13.08;ReadPosRankSum=3.025;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:10,116:126:99:1681,178,0 chrI 1035 . A T 2400 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=172;Dels=0.00;FS=3.029;HaplotypeScore=6.5984;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=20;MQRankSum=2.787;QD=13.95;ReadPosRankSum=3.037;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:14,158:172:99:2433,232,0 chrI 1074 . C A 5458.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.569;DP=331;Dels=0.00;FS=9.232;HaplotypeScore=18.9131;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=20;MQRankSum=4.802;QD=16.49;ReadPosRankSum=-1.332;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:27,304:331:99:5458,482,0 chrI 1101 . G A 5714.01 filter AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=8;QD=19.57;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:5714,645,0 chrI 1164 . T C 747.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DP=90;Dels=0.00;FS=30.274;HaplotypeScore=53.3648;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=4.148;QD=8.30;ReadPosRankSum=-3.036;SB=-5.490e+02 GT:AD:DP:GQ:PL 0/1:18,66:90:40:777,0,40 chrI 1184 . A T 416.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DP=57;Dels=0.00;FS=5.096;HaplotypeScore=17.5361;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=0;MQRankSum=3.854;QD=7.30;ReadPosRankSum=0.393;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:20,37:57:44:446,0,44 chrI 1197 . G T 754.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=65;Dels=0.00;FS=12.806;HaplotypeScore=10.6867;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;MQRankSum=3.931;QD=11.60;ReadPosRankSum=-1.074;SB=-1.091e+02 GT:AD:DP:GQ:PL 1/1:12,53:65:21:787,21,0 chrI 1217 . C T 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.646;DP=86;Dels=0.00;FS=6.292;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=3;MQRankSum=2.712;QD=15.17;ReadPosRankSum=1.073;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:7,79:86:99:1338,104,0 chrI 1230 . T A 1501 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.675;DP=114;Dels=0.00;FS=29.457;HaplotypeScore=9.0554;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=14;MQRankSum=2.163;QD=13.17;ReadPosRankSum=3.190;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:16,98:114:99:1534,127,0 chrI 1238 . C T 1453 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.931;DP=135;Dels=0.00;FS=44.361;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=18;MQRankSum=4.138;QD=10.76;ReadPosRankSum=3.271;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:20,115:135:99:1486,151,0 chrI 1263 . C T 2627 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=19;QD=14.43;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2660,288,0 chrI 1279 . C T 1807.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.740;DP=209;Dels=0.00;FS=80.970;HaplotypeScore=25.0807;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=19;MQRankSum=5.292;QD=8.65;ReadPosRankSum=1.391;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:68,141:209:99:1837,0,320 chrI 1303 . G T 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.750;DP=211;Dels=0.00;FS=4.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=16;MQRankSum=1.919;QD=0.39;ReadPosRankSum=2.471;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:192,19:211:99:112,0,1828 chrI 1329 . G A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;DP=152;Dels=0.00;FS=17.524;HaplotypeScore=22.1731;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=1;MQRankSum=2.722;QD=0.28;ReadPosRankSum=-1.653;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:125,27:152:72:72,0,1253 chrI 1334 . C T 968.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.060;DP=130;Dels=0.00;FS=10.764;HaplotypeScore=23.4912;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=1;MQRankSum=-1.837;QD=7.45;ReadPosRankSum=1.741;SB=-7.127e+02 GT:AD:DP:GQ:PL 0/1:15,114:130:99:998,0,148 chrI 1352 . A G 218.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.709;DP=75;Dels=0.00;FS=2.381;HaplotypeScore=7.8739;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=0;MQRankSum=3.780;QD=2.91;ReadPosRankSum=0.773;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:45,30:75:99:248,0,332 chrI 1358 . T C 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DP=70;Dels=0.00;FS=13.917;HaplotypeScore=10.6712;MLEAC=1;MLEAF=0.500;MQ=20.88;MQ0=0;MQRankSum=-4.345;QD=1.66;ReadPosRankSum=-0.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,36:70:99:146,0,330 chrI 1364 . T C 242.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;DP=54;Dels=0.00;FS=21.770;HaplotypeScore=6.5299;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=0;MQRankSum=-2.228;QD=4.48;ReadPosRankSum=-0.151;SB=-6.602e+01 GT:AD:DP:GQ:PL 0/1:3,51:54:34:272,0,34 chrI 1377 . G A 126.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=14;Dels=0.00;FS=8.129;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=1;MQRankSum=-0.935;QD=9.00;ReadPosRankSum=-0.134;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:21:159,21,0 chrI 1379 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=1;MQRankSum=1.568;QD=3.08;ReadPosRankSum=2.383;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:4,7:12:9:69,9,0 chrI 1382 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.61;MQ0=7;QD=2.23;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:70,9,0 chrI 1428 . T C 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;DP=51;Dels=0.00;FS=5.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.82;MQ0=16;MQRankSum=1.909;QD=0.43;ReadPosRankSum=0.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,6:51:52:52,0,143 chrI 1483 . C A 1506 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=48.6482;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=3;QD=13.21;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1539,180,0 chrI 1491 . C T 333.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=112;Dels=0.00;FS=0.878;HaplotypeScore=3.5441;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=1;MQRankSum=-4.643;QD=2.97;ReadPosRankSum=-1.030;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:59,53:112:99:363,0,762 chrI 1506 . T G 1452 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=13.44;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1485,177,0 chrI 1518 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=14.18;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1394,168,0 chrI 1547 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.33;MQ0=0;QD=2.66;SB=-2.749e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:12:99,12,0 chrI 1609 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=2.15;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:57,6,0 chrI 1628 . C T 35.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;QD=1.64;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:68,9,0 chrI 1632 . G A 73.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=3.06;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:106,12,0 chrI 1640 . A G 17.12 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;DP=27;Dels=0.00;FS=6.923;HaplotypeScore=7.4137;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=1;MQRankSum=-1.209;QD=0.63;ReadPosRankSum=-0.334;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:12,14:27:19:47,0,19 chrI 1707 . A G 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DP=42;Dels=0.00;FS=1.908;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=30.75;MQ0=5;MQRankSum=-1.734;QD=1.05;ReadPosRankSum=1.661;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:27,14:42:74:74,0,331 chrI 1733 . T A 618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.049;DP=52;Dels=0.02;FS=2.633;HaplotypeScore=4.1625;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=5;MQRankSum=2.503;QD=11.88;ReadPosRankSum=2.890;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:21,30:51:39:648,0,39 chrI 1770 . T G 736 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=21;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:90:769,90,0 chrI 1782 . C T 691 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=18;QD=10.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:84:724,84,0 chrI 1797 . G A 382 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=15.08;MQ0=20;MQRankSum=1.563;QD=7.21;ReadPosRankSum=0.462;SB=4.333e-03 GT:AD:DP:GQ:PL 1/1:8,44:53:51:415,51,0 chrI 1802 . T C 246 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.404;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=11.60;MQ0=26;MQRankSum=0.413;QD=4.64;ReadPosRankSum=1.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,41:53:36:279,36,0 chrI 1918 . A G 858.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;DP=359;Dels=0.00;FS=4.208;HaplotypeScore=42.0151;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=36;MQRankSum=-5.808;QD=2.39;ReadPosRankSum=-1.091;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:109,244:359:99:888,0,1960 chrI 1927 . G A 639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.832;DP=389;Dels=0.00;FS=182.357;HaplotypeScore=52.2680;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=42;MQRankSum=-3.979;QD=1.64;ReadPosRankSum=-0.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,199:389:99:669,0,2483 chrI 1963 . G A 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.462;DP=362;Dels=0.00;FS=187.756;HaplotypeScore=14.4266;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=96;MQRankSum=-3.373;QD=0.48;ReadPosRankSum=4.263;SB=1.11 GT:AD:DP:GQ:PL 0/1:274,88:362:99:202,0,2410 chrI 1976 . T C 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320;DP=311;Dels=0.00;FS=136.786;HaplotypeScore=53.7347;MLEAC=1;MLEAF=0.500;MQ=18.84;MQ0=99;MQRankSum=-3.201;QD=0.37;ReadPosRankSum=5.714;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:226,85:311:99:145,0,2108 chrI 1978 . G A 600.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DP=304;Dels=0.00;FS=2.884;HaplotypeScore=55.9229;MLEAC=1;MLEAF=0.500;MQ=18.47;MQ0=99;MQRankSum=3.082;QD=1.97;ReadPosRankSum=-3.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,52:304:99:630,0,1444 chrI 1993 . A C 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DP=231;Dels=0.00;FS=13.589;HaplotypeScore=10.5303;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=90;MQRankSum=4.760;QD=0.89;ReadPosRankSum=-4.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,32:231:99:236,0,1643 chrI 2029 . T C 1431 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.772;DP=108;Dels=0.00;FS=2.303;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.10;MQ0=34;MQRankSum=0.564;QD=13.25;ReadPosRankSum=3.990;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:6,101:108:99:1464,168,0 chrI 2068 . C A 348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;DP=345;Dels=0.00;FS=65.816;HaplotypeScore=17.7481;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=16;MQRankSum=3.570;QD=1.01;ReadPosRankSum=-0.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:299,46:345:99:378,0,3609 chrI 2113 . A G 946.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.274;DP=458;Dels=0.00;FS=86.178;HaplotypeScore=5.4286;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=71;MQRankSum=5.570;QD=2.07;ReadPosRankSum=1.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:349,109:458:99:976,0,3722 chrI 2223 . T A 1721 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=3;QD=17.38;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1754,198,0 chrI 2225 . A C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.810;DP=98;Dels=0.00;FS=35.722;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=2;MQRankSum=3.050;QD=17.51;ReadPosRankSum=2.823;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:6,92:98:99:1749,201,0 chrI 2243 . C G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;DP=86;Dels=0.00;FS=6.088;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=2;MQRankSum=1.834;QD=19.43;ReadPosRankSum=2.068;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1704,192,0 chrI 2275 . T G 592.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=104;Dels=0.00;FS=127.046;HaplotypeScore=73.3573;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=2;MQRankSum=3.237;QD=5.69;ReadPosRankSum=3.165;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:45,54:104:99:622,0,420 chrI 2278 . C T 575.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;DP=101;Dels=0.00;FS=149.002;HaplotypeScore=85.0231;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=2;MQRankSum=3.462;QD=5.69;ReadPosRankSum=2.580;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,53:101:99:605,0,358 chrI 2283 . G C 356.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442;DP=86;Dels=0.00;FS=204.667;HaplotypeScore=78.7137;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=1.831;QD=4.14;ReadPosRankSum=2.481;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:40,46:86:99:386,0,496 chrI 2284 . G T 275.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DP=86;Dels=0.00;FS=159.356;HaplotypeScore=65.5250;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=2.338;QD=3.20;ReadPosRankSum=1.164;SB=1.18 GT:AD:DP:GQ:PL 0/1:41,33:86:99:305,0,544 chrI 2287 . T C 377.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;DP=88;Dels=0.00;FS=211.147;HaplotypeScore=50.8814;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=2.101;QD=4.28;ReadPosRankSum=-1.190;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:42,46:88:99:407,0,468 chrI 2288 . G A 364.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DP=88;Dels=0.00;FS=200.833;HaplotypeScore=39.1886;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=2.037;QD=4.14;ReadPosRankSum=-2.554;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:43,45:88:99:394,0,558 chrI 2290 . T C 340.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;DP=91;Dels=0.00;FS=220.472;HaplotypeScore=26.6538;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=0;MQRankSum=1.480;QD=3.74;ReadPosRankSum=-4.036;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:45,46:91:99:370,0,562 chrI 2291 . G A 352.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DP=91;Dels=0.00;FS=220.472;HaplotypeScore=15.1077;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=0;MQRankSum=2.004;QD=3.87;ReadPosRankSum=-5.100;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:45,46:91:99:382,0,581 chrI 2295 . T C 343.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.353;DP=94;Dels=0.00;FS=229.354;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=0;MQRankSum=1.985;QD=3.65;ReadPosRankSum=-5.971;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:48,46:94:99:373,0,662 chrI 2323 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.79;MQ0=0;QD=17.50;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:978,128,0 chrI 2331 . A C 966 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=3;QD=16.95;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:999,128,0 chrI 2336 . T C 929 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.14;MQ0=3;QD=16.02;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:99:962,125,0 chrI 2340 . T C 961 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.14;MQ0=3;QD=16.57;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:994,128,0 chrI 2371 . T A 325 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=4;QD=10.83;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:3,27:30:48:358,48,0 chrI 2450 . T C 16.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.95;MQ0=0;MQRankSum=-1.531;QD=0.95;ReadPosRankSum=-0.510;SB=-2.522e+00 GT:AD:DP:GQ:PL 0/1:1,16:17:20:46,0,20 chrI 2512 . A G 642 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.32;MQ0=6;QD=12.11;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:5,48:53:87:675,87,0 chrI 27667 . A T 81.51 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=2.81;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:114,12,0 chrI 27668 . A T 78.51 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=2.71;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:111,12,0 chrI 27681 . A G 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=4.08;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:184,21,0 chrI 27684 . A C 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=4.03;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:182,21,0 chrI 27685 . G T 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=4.27;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:191,21,0 chrI 27688 . A T 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=3.60;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:195,21,0 chrI 27693 . G C 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=3.45;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:21:195,21,0 chrI 27699 . T A 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=3.40;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:186,21,0 chrI 27701 . A T 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=3.49;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:190,21,0 chrI 27702 . A T 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=3.53;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:192,21,0 chrI 27703 . C G 163.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=3.62;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:196,21,0 chrI 27716 . T G 142.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=-1.228;QD=2.58;ReadPosRankSum=1.669;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,54:55:21:175,21,0 chrI 27723 . A G 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.27;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:27:242,27,0 chrI 27725 . C T 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.04;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:27:231,27,0 chrI 27726 . A G 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.29;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:27:243,27,0 chrI 27729 . C A 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.85;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:27:233,27,0 chrI 27732 . G T 219.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=4.21;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:27:252,27,0 chrI 27738 . A C 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.08;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:237,27,0 chrI 27744 . T C 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.14;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:15:131,15,0 chrI 27747 . T A 109.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.73;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:142,15,0 chrI 27749 . C T 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.58;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:136,15,0 chrI 27750 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.81;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:105,12,0 chrI 27756 . A G 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=14.8722;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.67;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:15:137,15,0 chrI 27761 . G A 100.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=14.8722;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.674;QD=2.79;ReadPosRankSum=-0.096;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,35:36:15:133,15,0 chrI 27781 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.19;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:55,6,0 chrI 27782 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.19;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:55,6,0 chrI 27783 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.14;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:54,6,0 chrI 27804 . C A 124.13 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.60;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:157,18,0 chrI 27810 . T C 127.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.809;QD=4.24;ReadPosRankSum=1.617;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:1,29:30:18:160,18,0 chrI 27816 . G A 159.06 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=4.97;SB=-1.001e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:21:192,21,0 chrI 27822 . T C 298 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=7.27;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:331,39,0 chrI 27823 . C A 345 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=8.02;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:42:378,42,0 chrI 27825 . C T 332 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=7.38;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:42:365,42,0 chrI 27914 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=21.84;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2457,273,0 chrI 27948 . A G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=0.025;QD=17.17;ReadPosRankSum=1.682;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1218,135,0 chrI 27970 . T G 518 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=12.05;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:63:551,63,0 chrI 27983 . T A 630 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=12.12;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:72:663,72,0 chrI 27997 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=13.23;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:774,90,0 chrI 28007 . G C 948 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=55.9789;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=14.58;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:981,111,0 chrI 28083 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8774;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.21;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2302,258,0 chrI 28117 . G C 1620 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.25;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1653,192,0 chrI 28127 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.97;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1585,180,0 chrI 28321 . G A 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=0.876;QD=21.60;ReadPosRankSum=1.576;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1999,240,0 chrI 28352 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=23.75;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2646,306,0 chrI 28384 . G C 2017 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=19.58;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2050,248,0 chrI 28385 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=19.69;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2022,242,0 chrI 28427 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=15.68;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1193,141,0 chrI 28433 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=15.28;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1179,138,0 chrI 28458 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=17.76;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1347,150,0 chrI 28517 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=78.1093;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=18.29;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1734,204,0 chrI 28560 . A G 141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.075;DP=115;Dels=0.00;FS=6.213;HaplotypeScore=5.8451;MLEAC=1;MLEAF=0.500;MQ=37.89;MQ0=0;MQRankSum=-1.095;QD=1.23;ReadPosRankSum=-6.742;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:91,23:115:99:171,0,1023 chrI 28631 . A T 1664 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.58;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1697,192,0 chrI 28650 . G T 1324 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=18.14;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1357,150,0 chrI 28666 . A G 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=8.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;MQRankSum=0.378;QD=14.85;ReadPosRankSum=2.384;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1147,132,0 chrI 28684 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=12.86;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1113,129,0 chrI 28696 . G T 1120 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=12.17;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1153,132,0 chrI 28844 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=22.68;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2392,264,0 chrI 28926 . A T 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-1.060;QD=22.79;ReadPosRankSum=1.680;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3087,342,0 chrI 29009 . G T 62.51 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.04;FS=0.000;HaplotypeScore=67.2887;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=0.77;SB=-5.545e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:12:95,12,0 chrI 29093 . A T 1405 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=18.25;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1438,168,0 chrI 29109 . G C 1406 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=19.80;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:71:99:1439,162,0 chrI 29118 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=19.87;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1285,144,0 chrI 29126 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=19.62;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1132,132,0 chrI 29131 . A G 1017 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=18.83;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1050,126,0 chrI 29154 . G A 770 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=16.74;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:803,93,0 chrI 29180 . T C 524 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=13.44;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:557,66,0 chrI 29209 . C T 373 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=12.43;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:51:406,51,0 chrI 29226 . C T 383 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=14.19;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:51:416,51,0 chrI 29227 . A G 340 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=12.59;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:45:373,45,0 chrI 29245 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=10.10;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:39:326,39,0 chrI 29282 . C T 337 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=15.6571;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=11.23;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:42:370,42,0 chrI 29322 . G C 529 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=17.06;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:562,69,0 chrI 29352 . T C 428 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=17.12;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:60:461,60,0 chrI 29354 . T A 470 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=19.58;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:503,60,0 chrI 29374 . C T 494 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=19.00;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:527,63,0 chrI 29397 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=2.07;SB=-2.976e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:54,6,0 chrI 29400 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.08;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:52,6,0 chrI 29402 . A T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.68;SB=-3.176e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:58,6,0 chrI 29440 . G T 107.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=6.31;SB=-1.153e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:15:140,15,0 chrI 29441 . C T 109.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=6.43;SB=-1.153e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:15:142,15,0 chrI 29449 . A G 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=5.74;SB=-1.571e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:18:165,18,0 chrI 29459 . C T 162.06 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;QD=6.23;SB=-2.401e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:21:195,21,0 chrI 29476 . A G 154.06 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;QD=4.53;SB=-3.281e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:187,21,0 chrI 29508 . T C 252 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=7.20;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:285,33,0 chrI 29522 . T A 196.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=7.00;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:229,27,0 chrI 29530 . C T 200.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=20.6665;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=7.14;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:233,27,0 chrI 29564 . T C 303 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=15.15;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:336,39,0 chrI 29666 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.68;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:857,96,0 chrI 29693 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=22.67;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:849,93,0 chrI 29713 . T A 580 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=20.00;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:613,72,0 chrI 29746 . T C 269 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=10.6850;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=15.82;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:36:302,36,0 chrI 29778 . G A 161.06 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=13.42;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:194,21,0 chrI 29782 . A T 189.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=15.75;SB=-4.303e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:222,24,0 chrI 29787 . G A 180.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=15.00;SB=-4.303e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:213,24,0 chrI 29817 . G A 240 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=15.00;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:30:273,30,0 chrI 29849 . C T 131.06 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=22.6260;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;QD=4.37;SB=-3.191e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:21:164,21,0 chrI 29875 . T G 277 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=6.76;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:36:310,36,0 chrI 29883 . T C 285 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=75.3009;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=0;QD=6.63;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:36:318,36,0 chrI 29908 . C T 248 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=6.05;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:281,33,0 chrI 29911 . A G 278 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=6.78;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:36:311,36,0 chrI 29929 . A G 230 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=7.42;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:263,30,0 chrI 29931 . A C 239 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=7.71;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:272,30,0 chrI 30004 . T C 86.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.52;MQ0=0;MQRankSum=0.869;QD=7.19;ReadPosRankSum=0.869;SB=-6.624e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:15:119,15,0 chrI 30006 . T C 92.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;MQRankSum=-1.203;QD=7.10;ReadPosRankSum=0.935;SB=-7.024e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:125,15,0 chrI 30051 . C T 215 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=12.65;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:248,30,0 chrI 30066 . T A 227 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=12.61;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:260,33,0 chrI 30071 . G A 290 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;QD=16.11;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:323,39,0 chrI 30091 . A G 244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=18;Dels=0.00;FS=6.864;HaplotypeScore=5.8246;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=0.592;QD=13.56;ReadPosRankSum=1.066;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:3,15:18:33:277,33,0 chrI 30153 . G A 1005 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=45.3478;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=22.84;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1038,114,0 chrI 30204 . A G 636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=35;Dels=0.00;FS=8.824;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=0.391;QD=18.17;ReadPosRankSum=2.239;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:81:669,81,0 chrI 30209 . T A 578 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=20.64;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:611,75,0 chrI 30220 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=20.91;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:514,63,0 chrI 30239 . A G 361 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;QD=19.00;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:394,51,0 chrI 30265 . T G 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=15.71;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:190,21,0 chrI 30268 . C G 189.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=21.00;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:222,24,0 chrI 30274 . G A 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:213,24,0 chrI 30275 . A G 173.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:206,24,0 chrI 30277 . A G 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:223,24,0 chrI 30290 . C A 312 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.80;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:345,36,0 chrI 30300 . C A 268 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.76;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:301,36,0 chrI 30307 . T C 361 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=19.7010;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.41;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:394,45,0 chrI 30313 . A G 347 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=20.6744;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=15.09;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,22:23:42:380,42,0 chrI 30335 . C T 380 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=13.57;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:48:413,48,0 chrI 30351 . A G 308 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=-1.200;QD=11.85;ReadPosRankSum=1.600;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:1,25:26:39:341,39,0 chrI 30352 . C A 310 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.40;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:39:343,39,0 chrI 30356 . C G 294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=10.89;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:327,39,0 chrI 30361 . A T 317 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=12.19;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:350,39,0 chrI 30371 . C A 273 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=11.37;SB=-8.698e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:306,36,0 chrI 30381 . T C 199.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=11.06;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:232,27,0 chrI 30413 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=4.87;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:71,9,0 chrI 30422 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=2.27;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:47,6,0 chrI 30427 . G C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrI 30432 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrI 30434 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrI 30493 . G A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=1.08;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:44,6,0 chrI 30516 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=1.07;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:45,6,0 chrI 30522 . A G 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=1.15;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:46,6,0 chrI 30662 . T G 397 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=7.49;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:51:430,51,0 chrI 30669 . T C 396 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=7.20;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:51:429,51,0 chrI 30670 . T C 391 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=-1.670;QD=6.98;ReadPosRankSum=1.670;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:51:424,51,0 chrI 30713 . T G 621 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=11.09;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:654,78,0 chrI 30747 . A C 311 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=26;Dels=0.00;FS=34.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=0.722;QD=11.96;ReadPosRankSum=2.729;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:3,23:26:39:344,39,0 chrI 30749 . G A 322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=14.00;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:355,39,0 chrI 30755 . C G 307 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=14.62;SB=-7.608e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:39:340,39,0 chrI 30782 . T C 223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;MQRankSum=-1.734;QD=9.70;ReadPosRankSum=1.583;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:33:256,33,0 chrI 30787 . T C 282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;MQRankSum=-1.091;QD=10.44;ReadPosRankSum=1.605;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:39:315,39,0 chrI 30817 . T C 851 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=18.11;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:884,102,0 chrI 30840 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=19.30;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1249,141,0 chrI 30852 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.088;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-1.000;QD=19.58;ReadPosRankSum=1.683;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1423,168,0 chrI 30980 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=18.31;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:674,78,0 chrI 30987 . T G 661 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=18.36;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:694,81,0 chrI 31018 . G A 740 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=18.05;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:773,90,0 chrI 31026 . G C 871 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=18.93;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:904,102,0 chrI 31058 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4858;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=15.67;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:832,96,0 chrI 31152 . C T 349 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=10.58;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:382,42,0 chrI 31154 . G A 355 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=10.76;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:388,42,0 chrI 31168 . A G 284 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=6.76;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:36:317,36,0 chrI 31176 . A G 280 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=6.22;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:313,36,0 chrI 31212 . G A 692 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=12.58;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:78:725,78,0 chrI 31391 . A G 943 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.24;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:976,111,0 chrI 31403 . T A 790 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=17.95;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:823,93,0 chrI 31635 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.529;QD=22.00;ReadPosRankSum=2.333;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1419,159,0 chrI 31755 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7035;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.71;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2963,330,0 chrI 31821 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.88;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3122,336,0 chrI 31848 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=147;Dels=0.00;FS=2.797;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.242;QD=20.55;ReadPosRankSum=2.366;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3054,348,0 chrI 31975 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.95;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4128,450,0 chrI 31989 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.339;QD=19.78;ReadPosRankSum=1.714;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3739,429,0 chrI 32145 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.22;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3748,438,0 chrI 32158 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.2293;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.462;QD=17.27;ReadPosRankSum=1.683;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3645,417,0 chrI 32271 . G A 4638.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.18;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4638,522,0 chrI 32511 . C T 7446.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:0,339:339:99:7446,852,0 chrI 32652 . A C 6187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.7201;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.597;QD=20.97;ReadPosRankSum=1.685;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,292:295:99:6187,696,0 chrI 32883 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=23.12;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3306,366,0 chrI 32986 . G T 3044 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.59;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3077,333,0 chrI 32989 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=21.37;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3111,336,0 chrI 33040 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=16.80;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3040,345,0 chrI 33048 . A C 2970 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=16.59;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3003,342,0 chrI 33070 . A T 2906 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=17.40;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2939,318,0 chrI 33077 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=16.86;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2730,300,0 chrI 33086 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=17.25;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2603,294,0 chrI 33147 . G T 2621 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=19.56;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2654,288,0 chrI 33152 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=139;Dels=0.00;FS=5.963;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-1.109;QD=18.37;ReadPosRankSum=2.863;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2586,297,0 chrI 33200 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.42;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3839,441,0 chrI 33293 . A T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=24.03;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3581,402,0 chrI 33328 . C A 3208 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.56;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3241,366,0 chrI 33347 . T A 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=144;Dels=0.00;FS=3.394;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-1.488;QD=20.77;ReadPosRankSum=1.659;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3024,331,0 chrI 33348 . G C 3059 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.81;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3092,360,0 chrI 33502 . A G 4434.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.46;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4434,501,0 chrI 33548 . A C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.8808;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.47;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4905,546,0 chrI 33612 . A G 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=236;Dels=0.00;FS=4.091;HaplotypeScore=9.4612;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.703;QD=23.69;ReadPosRankSum=1.703;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5592,636,0 chrI 33892 . C G 7375.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=15.9905;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.71;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:7375,831,0 chrI 33996 . A G 6487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=293;Dels=0.00;FS=3.548;HaplotypeScore=19.5684;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.554;QD=22.14;ReadPosRankSum=1.673;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:6487,723,0 chrI 34170 . T A 6813.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=25.6404;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.63;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6813,753,0 chrI 34308 . C T 6689.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=15.3016;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.60;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6689,747,0 chrI 34515 . T C 5149.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.0678;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.45;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5149,585,0 chrI 34554 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=216;Dels=0.00;FS=5.290;HaplotypeScore=11.3292;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.164;QD=19.25;ReadPosRankSum=2.921;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4157,474,0 chrI 34566 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=3.959;HaplotypeScore=7.2622;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.117;QD=19.28;ReadPosRankSum=1.716;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4145,465,0 chrI 34991 . A G 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.836;QD=16.03;ReadPosRankSum=0.550;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1428,162,0 chrI 35059 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.89;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,192,0 chrI 35070 . C T 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7783;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.854;QD=22.03;ReadPosRankSum=0.415;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1619,177,0 chrI 35466 . G A 4620.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.79;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4620,510,0 chrI 35508 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2484;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.49;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3347,378,0 chrI 35514 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=18.97;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3472,393,0 chrI 35565 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.8008;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.459;QD=18.52;ReadPosRankSum=1.715;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:3778,435,0 chrI 35568 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.0099;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-0.503;QD=19.49;ReadPosRankSum=1.681;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:3996,447,0 chrI 35631 . G C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.58;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:3716,429,0 chrI 35668 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.81;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3838,423,0 chrI 35736 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.93;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2579,294,0 chrI 35751 . T C 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.212;QD=19.55;ReadPosRankSum=1.710;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3064,342,0 chrI 35796 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1987;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.55;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2887,327,0 chrI 35818 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=146;Dels=0.00;FS=5.912;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=2.345;QD=21.46;ReadPosRankSum=2.938;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3166,357,0 chrI 35970 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.611;QD=21.69;ReadPosRankSum=1.672;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3817,444,0 chrI 36005 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=194;Dels=0.00;FS=8.770;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.741;QD=22.83;ReadPosRankSum=2.412;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4429,501,0 chrI 36048 . C G 4495.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.04;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4495,510,0 chrI 36123 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.42;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3721,411,0 chrI 36160 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.63;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3590,393,0 chrI 36313 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.037;QD=18.64;ReadPosRankSum=2.401;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1897,213,0 chrI 36524 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1826,198,0 chrI 36574 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1931,216,0 chrI 36637 . A G 2136 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2169,246,0 chrI 36800 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.38;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1704,183,0 chrI 36898 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.40;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2004,228,0 chrI 37008 . C A 2574 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.06;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2607,288,0 chrI 37019 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.30;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2374,276,0 chrI 37069 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.19;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1855,201,0 chrI 37255 . T C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=83;Dels=0.00;FS=3.770;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.706;QD=20.08;ReadPosRankSum=1.689;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1700,192,0 chrI 37294 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.732;QD=21.71;ReadPosRankSum=1.689;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1813,207,0 chrI 37315 . T A 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.811;QD=19.91;ReadPosRankSum=1.688;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1626,189,0 chrI 37330 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.367;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.479;QD=20.72;ReadPosRankSum=1.690;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1732,192,0 chrI 37553 . A G 3119 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8225;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.77;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3152,360,0 chrI 37595 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.61;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3663,402,0 chrI 37885 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3020,348,0 chrI 37976 . C A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.18;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3482,378,0 chrI 38120 . A T 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.594;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.674;QD=24.12;ReadPosRankSum=1.711;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4028,438,0 chrI 38236 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.80;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4440,492,0 chrI 38361 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.669;QD=23.02;ReadPosRankSum=1.240;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4121,456,0 chrI 38490 . C G 3067 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=16.31;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:3100,351,0 chrI 38504 . T G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;MQRankSum=1.125;QD=14.80;ReadPosRankSum=1.693;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2653,297,0 chrI 38508 . G T 2709 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=15.57;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2742,297,0 chrI 38524 . C A 2107 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=12.25;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:2140,237,0 chrI 38533 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;MQRankSum=-0.390;QD=11.40;ReadPosRankSum=1.632;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2006,225,0 chrI 38657 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.10;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4266,462,0 chrI 38689 . G C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=22.52;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4031,453,0 chrI 38888 . A C 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.62;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3124,351,0 chrI 38980 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7214;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.21;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2790,300,0 chrI 39009 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.621;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.170;QD=20.90;ReadPosRankSum=1.675;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2604,300,0 chrI 39105 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=167;Dels=0.00;FS=7.412;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.591;QD=20.07;ReadPosRankSum=2.420;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3352,375,0 chrI 39123 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.63;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3655,414,0 chrI 39162 . C G 3993.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8702;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.82;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3993,450,0 chrI 39795 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.19;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1707,186,0 chrI 39901 . T C 2440 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.40;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2473,276,0 chrI 39919 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.267;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.737;QD=23.23;ReadPosRankSum=1.692;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2054,228,0 chrI 39920 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.10;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2043,231,0 chrI 39963 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=16.24;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1413,156,0 chrI 40064 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.92;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2313,261,0 chrI 40237 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2896;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.05;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2661,297,0 chrI 40380 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.40;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2318,255,0 chrI 40860 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=169;Dels=0.00;FS=6.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.557;QD=21.10;ReadPosRankSum=2.851;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3566,405,0 chrI 40866 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=167;Dels=0.00;FS=6.642;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.626;QD=21.02;ReadPosRankSum=2.361;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3510,396,0 chrI 40914 . C G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.05;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3469,396,0 chrI 41278 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6839;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.05;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3703,420,0 chrI 41481 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.33;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3668,426,0 chrI 41497 . A C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.50;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3315,384,0 chrI 41499 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.84;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3453,381,0 chrI 41587 . C T 5104.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.29;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:5104,567,0 chrI 41736 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.240;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.522;QD=20.03;ReadPosRankSum=1.708;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2998,342,0 chrI 41739 . A G 2807 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.77;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2840,324,0 chrI 41802 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.68;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2162,243,0 chrI 41883 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.03;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2198,243,0 chrI 41906 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.68;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1919,213,0 chrI 41987 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.63;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1136,129,0 chrI 42115 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=2.685;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.168;QD=20.00;ReadPosRankSum=2.375;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1353,153,0 chrI 42137 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.76;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1590,180,0 chrI 42257 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.50;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3545,387,0 chrI 42484 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.2484;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.413;QD=14.60;ReadPosRankSum=0.988;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:3343,363,0 chrI 42527 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.3623;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.61;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3760,420,0 chrI 42554 . A T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.95;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3490,387,0 chrI 42562 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.90;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3252,360,0 chrI 42590 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.47;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2681,303,0 chrI 42629 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.45;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2044,234,0 chrI 42635 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.77;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2069,225,0 chrI 42684 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.64;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1934,213,0 chrI 43004 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2691,294,0 chrI 43137 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.29;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4567,498,0 chrI 43478 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.24;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3109,360,0 chrI 43565 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3416,396,0 chrI 43691 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.56;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3604,396,0 chrI 43784 . C G 3362.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.72;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3362,378,0 chrI 44384 . A G 4781.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6567;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.79;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4781,546,0 chrI 44588 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=202;Dels=0.00;FS=2.846;HaplotypeScore=11.7151;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.395;QD=21.42;ReadPosRankSum=2.401;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4327,489,0 chrI 44675 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.534;QD=21.42;ReadPosRankSum=-1.658;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4069,443,0 chrI 44891 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.15;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3633,414,0 chrI 44935 . C A 2930 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.63;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2963,330,0 chrI 45024 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=175.3275;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.86;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3912,432,0 chrI 45198 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.51;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1925,222,0 chrI 45431 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.2008;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=15.41;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1312,153,0 chrI 45546 . A T 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.332;QD=18.05;ReadPosRankSum=2.401;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1838,201,0 chrI 45831 . G C 2515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.46;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2548,291,0 chrI 46030 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3232,366,0 chrI 46375 . A T 6729.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.5651;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.97;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6729,730,0 chrI 46723 . A G 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=234;Dels=0.00;FS=5.864;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.798;QD=23.39;ReadPosRankSum=2.961;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5474,621,0 chrI 46837 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.66;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3842,429,0 chrI 46846 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.45;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3462,396,0 chrI 46894 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.070;QD=19.70;ReadPosRankSum=1.707;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2712,309,0 chrI 46912 . T G 2418 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.34;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2451,282,0 chrI 46966 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.517;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.045;QD=20.01;ReadPosRankSum=1.672;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2374,264,0 chrI 47044 . A C 2293 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.85;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2326,264,0 chrI 47206 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.166;QD=20.39;ReadPosRankSum=1.702;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2378,276,0 chrI 47518 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.666;QD=21.96;ReadPosRankSum=1.710;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3447,399,0 chrI 47660 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.479;QD=20.66;ReadPosRankSum=1.709;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3235,372,0 chrI 47690 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=147;Dels=0.00;FS=2.942;HaplotypeScore=8.2353;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=2.012;QD=22.29;ReadPosRankSum=2.382;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3277,363,0 chrI 47896 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3894,432,0 chrI 48115 . G C 2804 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2837,318,0 chrI 48286 . A T 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.115;QD=17.52;ReadPosRankSum=1.675;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1102,123,0 chrI 48751 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=139;Dels=0.00;FS=3.003;HaplotypeScore=14.4410;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.378;QD=21.05;ReadPosRankSum=2.360;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2959,336,0 chrI 48815 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.272;QD=23.97;ReadPosRankSum=2.391;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4003,450,0 chrI 48890 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.40;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3440,375,0 chrI 49103 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.14;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2210,255,0 chrI 49114 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=4.249;HaplotypeScore=6.7540;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.211;QD=18.91;ReadPosRankSum=1.706;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2548,288,0 chrI 49247 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.13;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2045,225,0 chrI 49403 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.55;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2253,252,0 chrI 49505 . T C 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=22.74;ReadPosRankSum=1.696;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2216,249,0 chrI 49614 . T A 2398 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.85;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2431,276,0 chrI 49871 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.75;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1664,183,0 chrI 50024 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2731,294,0 chrI 50204 . A G 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.490;QD=22.20;ReadPosRankSum=1.708;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3208,366,0 chrI 50343 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.06;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2497,285,0 chrI 50354 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.59;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2188,246,0 chrI 50384 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.00;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2153,237,0 chrI 50432 . T C 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.811;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.223;QD=20.55;ReadPosRankSum=1.664;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2129,240,0 chrI 50456 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.71;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2117,234,0 chrI 50498 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.27;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1959,216,0 chrI 50660 . T A 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=1.032;QD=18.90;ReadPosRankSum=1.693;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1753,198,0 chrI 50663 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.12;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1864,213,0 chrI 50741 . T C 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.616;QD=21.97;ReadPosRankSum=1.694;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,89:93:99:2076,237,0 chrI 50840 . A G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=108;Dels=0.00;FS=6.144;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.840;QD=20.88;ReadPosRankSum=2.358;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2288,261,0 chrI 50954 . C G 2468 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2501,282,0 chrI 51095 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3219,351,0 chrI 51287 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=3.072;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.512;QD=22.97;ReadPosRankSum=1.683;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3308,366,0 chrI 51321 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.104;QD=20.48;ReadPosRankSum=0.672;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2716,288,0 chrI 51371 . A C 2864 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.17;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2897,324,0 chrI 51434 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=3.039;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.478;QD=20.25;ReadPosRankSum=2.328;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2483,285,0 chrI 51951 . T G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.22;ReadPosRankSum=1.687;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1667,198,0 chrI 52164 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4618,510,0 chrI 52310 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.14;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3818,426,0 chrI 52603 . A T 1893 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.93;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1926,219,0 chrI 52613 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.63;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1859,207,0 chrI 52632 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.757;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.039;QD=19.05;ReadPosRankSum=1.659;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1843,207,0 chrI 52733 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=88;Dels=0.00;FS=2.837;HaplotypeScore=10.3442;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.770;QD=21.65;ReadPosRankSum=1.470;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1938,222,0 chrI 52846 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.49;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2294,252,0 chrI 52849 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=5.241;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=1.614;QD=18.37;ReadPosRankSum=1.703;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2237,252,0 chrI 52858 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.271;QD=18.46;ReadPosRankSum=1.705;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2396,279,0 chrI 52939 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9802;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.46;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2346,261,0 chrI 52951 . G T 2175 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.33;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2208,246,0 chrI 52984 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.82;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2946,333,0 chrI 52996 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=3.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.323;QD=20.10;ReadPosRankSum=1.709;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3108,348,0 chrI 53146 . T G 2859 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.87;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2892,327,0 chrI 53167 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.41;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3272,372,0 chrI 53266 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.2110;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.685;QD=23.02;ReadPosRankSum=-1.520;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3430,378,0 chrI 53542 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4379,486,0 chrI 53836 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=3.044;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.661;QD=22.45;ReadPosRankSum=2.412;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2997,345,0 chrI 53843 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.17;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3048,342,0 chrI 53851 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.71;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2985,321,0 chrI 53935 . A T 2661 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.55;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2694,300,0 chrI 54175 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.183;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.203;QD=21.23;ReadPosRankSum=1.679;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2835,333,0 chrI 54198 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.15;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3221,354,0 chrI 54244 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=4.550;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.310;QD=22.84;ReadPosRankSum=1.706;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3094,348,0 chrI 54319 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.312;QD=21.69;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2701,303,0 chrI 54478 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=19.56;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2948,324,0 chrI 54481 . T C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=151;Dels=0.00;FS=5.273;HaplotypeScore=4.2107;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.452;QD=18.22;ReadPosRankSum=3.341;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:4,145:151:99:2784,312,0 chrI 54508 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9997;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.62;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2835,318,0 chrI 54661 . G T 3003 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.45;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3036,345,0 chrI 54679 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.21;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3054,354,0 chrI 54742 . A C 1827 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.57;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1860,216,0 chrI 54784 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.09;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1643,189,0 chrI 54806 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=15.79;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1265,141,0 chrI 55145 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.50;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1667,195,0 chrI 55171 . A G 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.96;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2273,255,0 chrI 55213 . A C 2702 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.97;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2735,309,0 chrI 55256 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.703;QD=22.59;ReadPosRankSum=1.703;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2699,312,0 chrI 55327 . C A 1677 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.45;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1710,186,0 chrI 55508 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1421,159,0 chrI 55688 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1649,183,0 chrI 55793 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=7.836;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.210;QD=21.40;ReadPosRankSum=2.394;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1916,219,0 chrI 56007 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.0241;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.53;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3257,369,0 chrI 56107 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=128;Dels=0.00;FS=6.849;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.978;QD=20.77;ReadPosRankSum=2.275;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2692,303,0 chrI 56129 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.02;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2087,237,0 chrI 56144 . T G 2205 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.37;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2238,255,0 chrI 56195 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=153;Dels=0.00;FS=2.581;HaplotypeScore=17.1468;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.113;QD=17.91;ReadPosRankSum=2.941;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2773,312,0 chrI 56351 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.70;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2439,264,0 chrI 56786 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2284,255,0 chrI 56871 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.24;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2471,264,0 chrI 56878 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=112.6537;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=15.20;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2206,252,0 chrI 56904 . G C 1771 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=16.25;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1804,204,0 chrI 57041 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.65;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2572,285,0 chrI 57155 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.53;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3112,360,0 chrI 57320 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.63;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3507,402,0 chrI 57391 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=4.109;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.060;QD=21.66;ReadPosRankSum=1.671;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3682,423,0 chrI 57669 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.495;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.646;QD=21.54;ReadPosRankSum=1.646;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3490,390,0 chrI 58073 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.73;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2988,327,0 chrI 58490 . A T 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=177;Dels=0.00;FS=2.925;HaplotypeScore=7.5687;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.565;QD=20.73;ReadPosRankSum=2.394;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3669,405,0 chrI 58494 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.28;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3639,396,0 chrI 58600 . G T 4795.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.0217;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.28;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4795,525,0 chrI 58794 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.13;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4464,492,0 chrI 58827 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.47;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3798,414,0 chrI 59073 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4216,459,0 chrI 59229 . G T 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.043;QD=23.16;ReadPosRankSum=1.397;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4123,450,0 chrI 59349 . A C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=7.744;HaplotypeScore=14.1263;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.236;QD=22.42;ReadPosRankSum=2.421;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3811,438,0 chrI 59394 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4047,444,0 chrI 59475 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4727;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.556;QD=19.21;ReadPosRankSum=-1.451;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3803,429,0 chrI 59496 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.78;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,232:237:99:4687,528,0 chrI 59659 . C G 5604.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.64;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5604,633,0 chrI 59976 . T C 2818 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.51;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2851,324,0 chrI 59985 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.560;DP=128;Dels=0.00;FS=10.698;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.296;QD=20.09;ReadPosRankSum=2.896;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:2605,276,0 chrI 60165 . T C 2710 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.07;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2743,309,0 chrI 60198 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.23;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2916,318,0 chrI 60246 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.15;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3223,357,0 chrI 60384 . C T 4085.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.34;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4085,450,0 chrI 60417 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.75;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3918,429,0 chrI 60526 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=214;Dels=0.00;FS=13.072;HaplotypeScore=24.2113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.167;QD=22.20;ReadPosRankSum=2.938;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:3,208:214:99:4751,528,0 chrI 60774 . T C 6419.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=20.0797;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.83;SB=-3.529e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6419,738,0 chrI 60912 . A G 6095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=276;Dels=0.00;FS=3.270;HaplotypeScore=16.8572;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.042;QD=22.08;ReadPosRankSum=1.694;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:6095,690,0 chrI 62361 . T C 4831.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=25.2802;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.96;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,237:242:99:4831,540,0 chrI 62654 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.16;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1362,150,0 chrI 64483 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=10.0505;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.70;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3754,414,0 chrI 64795 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=174;Dels=0.00;FS=5.258;HaplotypeScore=16.2801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.177;QD=22.66;ReadPosRankSum=3.358;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3943,456,0 chrI 64936 . C G 2283 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2316,264,0 chrI 65359 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.69;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1827,207,0 chrI 65365 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.89;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1828,204,0 chrI 65451 . A C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;MQRankSum=-0.427;QD=20.70;ReadPosRankSum=1.682;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1461,162,0 chrI 65453 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=21.06;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1465,168,0 chrI 65506 . T C 681 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=13.35;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:81:714,81,0 chrI 65514 . A T 754 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=13.46;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:787,90,0 chrI 65570 . A G 594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.660;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:72:627,72,0 chrI 65590 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=13.26;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:66:603,66,0 chrI 65871 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.62;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1662,183,0 chrI 65892 . A C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.377;QD=18.58;ReadPosRankSum=1.643;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1501,168,0 chrI 65910 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.39;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1623,186,0 chrI 65991 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.11;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3282,357,0 chrI 66003 . T C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.137;QD=19.84;ReadPosRankSum=1.706;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2751,318,0 chrI 66033 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6528;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.95;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2442,279,0 chrI 67269 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.732;QD=19.61;ReadPosRankSum=1.695;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:3726,423,0 chrI 67275 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5858;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.78;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3774,414,0 chrI 67421 . A C 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=253;Dels=0.00;FS=7.898;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.152;QD=22.00;ReadPosRankSum=2.430;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:2,248:253:99:5567,621,0 chrI 67441 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8380;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.65;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4667,513,0 chrI 67476 . C G 4696.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=21.3006;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.07;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:4696,528,0 chrI 70024 . T C 2793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.65;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2826,318,0 chrI 70045 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.976;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.636;QD=19.93;ReadPosRankSum=2.414;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2803,324,0 chrI 70071 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.71;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3243,354,0 chrI 70506 . T A 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.038;QD=20.18;ReadPosRankSum=1.694;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1849,216,0 chrI 71601 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.22;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1509,171,0 chrI 73882 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.19;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2321,258,0 chrI 73976 . A T 2903 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.81;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2936,321,0 chrI 73999 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1344;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.552;QD=21.74;ReadPosRankSum=1.991;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2598,303,0 chrI 74047 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.09;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2077,228,0 chrI 74050 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=16.71;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1921,219,0 chrI 74156 . T G 2975 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.54;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3008,342,0 chrI 74451 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3070,336,0 chrI 75211 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.395;QD=22.41;ReadPosRankSum=2.356;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2386,267,0 chrI 76368 . G C 3153 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.02;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3186,366,0 chrI 76386 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.2872;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.39;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3292,366,0 chrI 76417 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=158;Dels=0.00;FS=5.671;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.930;QD=20.16;ReadPosRankSum=2.943;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3219,363,0 chrI 76456 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.9228;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.76;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4210,456,0 chrI 76496 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.71;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3489,390,0 chrI 76497 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.71;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3548,393,0 chrI 77115 . G T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.06;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3297,375,0 chrI 81442 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.31;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3436,387,0 chrI 82379 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4044,447,0 chrI 83284 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=5.878;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.22;ReadPosRankSum=1.703;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2819,312,0 chrI 83539 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3803,435,0 chrI 83613 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=164;Dels=0.00;FS=3.340;HaplotypeScore=16.2630;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.162;QD=22.19;ReadPosRankSum=1.711;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3639,408,0 chrI 84112 . T C 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=278;Dels=0.00;FS=6.068;HaplotypeScore=18.7826;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.704;QD=19.72;ReadPosRankSum=2.939;SB=-3.469e+03 GT:AD:DP:GQ:PL 1/1:3,275:278:99:5482,627,0 chrI 84810 . A C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=5.710;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.668;QD=23.10;ReadPosRankSum=1.636;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2528,285,0 chrI 85480 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=19.3535;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.711;QD=23.60;ReadPosRankSum=1.110;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4036,435,0 chrI 85751 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.80;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1913,216,0 chrI 88173 . C A 2508 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2541,285,0 chrI 88212 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2473,276,0 chrI 88393 . A C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.219;QD=21.49;ReadPosRankSum=1.668;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2375,270,0 chrI 88638 . A G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=127;Dels=0.00;FS=5.024;HaplotypeScore=5.8067;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.475;QD=18.30;ReadPosRankSum=1.704;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2357,273,0 chrI 88645 . G C 2474 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.18;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2507,288,0 chrI 88782 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.65;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2800,309,0 chrI 88812 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.248;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.693;QD=21.80;ReadPosRankSum=1.686;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3314,384,0 chrI 89010 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.17;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2877,327,0 chrI 89060 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.26;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2505,282,0 chrI 89266 . A C 2644 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=21.50;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2677,303,0 chrI 89268 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.485;QD=20.36;ReadPosRankSum=1.677;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2578,297,0 chrI 89334 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.36;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2810,315,0 chrI 89430 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.55;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2444,273,0 chrI 89433 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-0.357;QD=18.32;ReadPosRankSum=1.706;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2469,279,0 chrI 89472 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.59;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2710,309,0 chrI 89484 . C G 2501 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=17.01;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2534,285,0 chrI 89494 . A G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=142;Dels=0.00;FS=12.884;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-0.813;QD=15.95;ReadPosRankSum=3.370;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:4,135:142:99:2298,258,0 chrI 89561 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.27;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2403,279,0 chrI 89679 . T A 2969 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.16;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3002,339,0 chrI 89705 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.604;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.534;QD=22.98;ReadPosRankSum=1.706;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3090,348,0 chrI 89805 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2670,294,0 chrI 89979 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=20.94;ReadPosRankSum=1.699;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2211,246,0 chrI 90064 . G T 2264 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2297,252,0 chrI 93789 . T A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.9422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4538,489,0 chrI 94472 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2179,237,0 chrI 96904 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.15;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3596,390,0 chrI 97891 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=3.241;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.597;QD=22.12;ReadPosRankSum=1.702;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2665,306,0 chrI 99471 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.557;QD=22.03;ReadPosRankSum=1.697;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4361,492,0 chrI 101008 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3458,396,0 chrI 107538 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=3.057;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.493;QD=23.99;ReadPosRankSum=1.677;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4535,501,0 chrI 109000 . C T 5709.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.46;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5709,648,0 chrI 109735 . A G 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=222;Dels=0.00;FS=13.308;HaplotypeScore=16.7669;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.027;QD=22.68;ReadPosRankSum=3.390;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:5035,573,0 chrI 112136 . G T 2829 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.7883;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.57;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2862,324,0 chrI 112237 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4669,510,0 chrI 113132 . A G 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=275;Dels=0.00;FS=3.550;HaplotypeScore=19.0799;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.126;QD=21.05;ReadPosRankSum=1.669;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:5790,660,0 chrI 113207 . T C 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=228;Dels=0.00;FS=6.013;HaplotypeScore=17.4716;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.458;QD=20.32;ReadPosRankSum=2.951;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:3,223:228:99:4632,525,0 chrI 113326 . C G 4770.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.58;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4770,534,0 chrI 114652 . C T 5103.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=12.1581;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=18.83;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5103,552,0 chrI 114824 . C T 5692.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5692,618,0 chrI 116327 . T C 5715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=254;Dels=0.00;FS=2.903;HaplotypeScore=18.3362;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.257;QD=22.50;ReadPosRankSum=2.391;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:5715,651,0 chrI 119344 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1957;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.34;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3404,387,0 chrI 119350 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=174;Dels=0.00;FS=6.090;HaplotypeScore=7.8278;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.877;QD=19.98;ReadPosRankSum=2.936;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:3476,399,0 chrI 119404 . G C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.02;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3847,441,0 chrI 119460 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2916,318,0 chrI 119659 . T G 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.139;DP=36;Dels=0.00;FS=5.898;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.436;QD=16.64;ReadPosRankSum=1.634;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:72:632,72,0 chrI 119951 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.06;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2349,267,0 chrI 120281 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2589,294,0 chrI 120347 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.81;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2816,315,0 chrI 120378 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.99;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2771,303,0 chrI 120964 . C G 2806 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2839,318,0 chrI 126600 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.29;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3021,327,0 chrI 126902 . C G 952 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.41;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:985,117,0 chrI 128704 . C A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4249,477,0 chrI 129476 . A G 5553.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.8039;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.33;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5553,627,0 chrI 129517 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=210;Dels=0.00;FS=6.079;HaplotypeScore=19.7997;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.493;QD=20.77;ReadPosRankSum=2.928;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4361,495,0 chrI 130254 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.081;QD=15.86;ReadPosRankSum=2.263;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:2554,288,0 chrI 130271 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=12.04;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2031,225,0 chrI 130292 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=12.10;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:2223,243,0 chrI 130362 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.64;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3127,342,0 chrI 130639 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.80;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1886,204,0 chrI 130776 . C G 2220 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2253,258,0 chrI 130975 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.55;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3878,426,0 chrI 131539 . C T 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.181;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=17.5535;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=0.657;QD=19.89;ReadPosRankSum=0.144;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:5548,585,0 chrI 131635 . T C 5909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.612;DP=294;Dels=0.00;FS=4.305;HaplotypeScore=26.1290;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.610;QD=20.10;ReadPosRankSum=2.617;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:5,288:293:99:5909,687,0 chrI 131980 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.52;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1694,183,0 chrI 132189 . A C 2958 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5011;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.45;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2991,336,0 chrI 132423 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.866;QD=18.97;ReadPosRankSum=1.705;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2480,276,0 chrI 132468 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.49;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2255,258,0 chrI 132618 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.71;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2725,315,0 chrI 132723 . G A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=146;Dels=0.00;FS=3.454;HaplotypeScore=8.1158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.024;QD=20.89;ReadPosRankSum=0.192;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3083,320,0 chrI 132831 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.30;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2909,330,0 chrI 133080 . A G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.245;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.608;QD=22.48;ReadPosRankSum=1.702;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2618,306,0 chrI 133134 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4387;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.58;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2450,276,0 chrI 133174 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.02;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3828,414,0 chrI 133346 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.95;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3179,348,0 chrI 133347 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.73;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2994,339,0 chrI 133425 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0970;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.27;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3055,348,0 chrI 133429 . T G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=172;Dels=0.00;FS=7.767;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=1.060;QD=18.61;ReadPosRankSum=2.420;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,166:172:99:3234,366,0 chrI 133470 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.45;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2990,327,0 chrI 133615 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.90;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2551,276,0 chrI 133640 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.708;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.138;QD=18.80;ReadPosRankSum=2.374;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1875,213,0 chrI 133749 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.00;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2333,261,0 chrI 133857 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.17;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1854,201,0 chrI 134219 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.52;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2291,252,0 chrI 134475 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.442;QD=23.15;ReadPosRankSum=1.698;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2417,273,0 chrI 134587 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.28;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2243,252,0 chrI 134604 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.453;QD=21.06;ReadPosRankSum=1.701;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2392,270,0 chrI 134639 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.14;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1901,207,0 chrI 134661 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.91;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1734,192,0 chrI 135181 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.00;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3288,357,0 chrI 135222 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.37;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2907,315,0 chrI 135325 . G C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3503,396,0 chrI 135417 . T A 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=116;Dels=0.00;FS=8.209;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.508;QD=22.64;ReadPosRankSum=2.386;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2659,288,0 chrI 135827 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=26.56;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2583,273,0 chrI 135952 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.43;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2342,264,0 chrI 136041 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.77;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3265,360,0 chrI 136057 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.678;QD=21.36;ReadPosRankSum=1.678;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2788,312,0 chrI 136153 . C G 2475 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.15;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2508,282,0 chrI 136160 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.94;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2504,276,0 chrI 136195 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.91;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2283,258,0 chrI 136667 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2089,225,0 chrI 136814 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.927;QD=23.23;ReadPosRankSum=1.692;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2031,231,0 chrI 136961 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=159;Dels=0.00;FS=2.583;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.589;QD=24.25;ReadPosRankSum=2.918;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3855,441,0 chrI 137148 . C G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.21;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3817,438,0 chrI 137167 . C A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.56;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3945,432,0 chrI 137237 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.67;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3051,348,0 chrI 137264 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2555;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.451;QD=20.48;ReadPosRankSum=1.708;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3064,348,0 chrI 137336 . A G 2471 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.68;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2504,282,0 chrI 138257 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.42;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3053,354,0 chrI 138499 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.51;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2098,228,0 chrI 138591 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.346;QD=21.86;ReadPosRankSum=1.513;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2110,237,0 chrI 138650 . A G 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;MQRankSum=-1.606;QD=17.02;ReadPosRankSum=1.606;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:969,111,0 chrI 138655 . G A 945 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=17.18;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:978,111,0 chrI 138666 . A G 752 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=15.67;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:785,90,0 chrI 138667 . A G 726 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=15.45;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:759,87,0 chrI 138668 . T G 768 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;QD=16.00;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:801,90,0 chrI 138669 . T C 765 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=4.597;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;MQRankSum=-1.379;QD=15.61;ReadPosRankSum=1.662;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:90:798,90,0 chrI 138770 . A G 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.990;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;MQRankSum=-1.730;QD=16.01;ReadPosRankSum=2.313;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1186,135,0 chrI 138780 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=14.94;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1049,120,0 chrI 138785 . C T 782 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=13.03;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:815,93,0 chrI 138791 . T C 571 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;MQRankSum=-0.962;QD=10.57;ReadPosRankSum=1.476;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:72:604,72,0 chrI 138793 . T C 540 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=0.817;QD=10.19;ReadPosRankSum=1.602;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:66:573,66,0 chrI 138806 . A T 520 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=10.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:553,63,0 chrI 138807 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=11.61;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:602,69,0 chrI 138823 . A G 524 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=10.69;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:557,63,0 chrI 138824 . T C 519 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=10.59;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:552,63,0 chrI 139045 . C G 2054 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=23.08;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2087,237,0 chrI 139073 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=23.74;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1837,204,0 chrI 139123 . T C 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=-0.250;QD=16.53;ReadPosRankSum=2.317;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1256,144,0 chrI 139132 . A T 1192 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=16.56;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1225,135,0 chrI 139199 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.38;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1316,141,0 chrI 139277 . T C 782 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.00;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:815,90,0 chrI 139311 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.56;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:876,102,0 chrI 139692 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.13;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4289,492,0 chrI 140286 . A G 716.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.822;DP=272;Dels=0.00;FS=85.798;HaplotypeScore=6.3851;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=68;MQRankSum=-3.102;QD=2.63;ReadPosRankSum=-0.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,132:272:99:746,0,974 chrI 140346 . T A 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;DP=195;Dels=0.00;FS=118.434;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=76;MQRankSum=-5.668;QD=1.03;ReadPosRankSum=-2.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,77:195:99:230,0,1298 chrI 140397 . T C 889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=50;MQRankSum=-5.354;QD=4.49;ReadPosRankSum=-1.015;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:116,81:198:99:919,0,1491 chrI 140418 . G A 1496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=36;MQRankSum=-4.631;QD=6.18;ReadPosRankSum=1.672;SB=-6.040e+02 GT:AD:DP:GQ:PL 0/1:130,110:242:99:1526,0,1798 chrI 140526 . C T 923.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;DP=209;Dels=0.00;FS=17.461;HaplotypeScore=16.4529;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=101;MQRankSum=-2.132;QD=4.42;ReadPosRankSum=-1.175;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:97,108:209:99:953,0,792 chrI 141030 . T A 2008 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=6;MQRankSum=-2.418;QD=24.49;ReadPosRankSum=2.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2041,222,0 chrI 141135 . A T 3164 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5373;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=4;QD=21.52;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3197,354,0 chrI 141180 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.1593;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=3;QD=17.45;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3821,441,0 chrI 141184 . G C 4214.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.4345;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=3;QD=18.40;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4214,474,0 chrI 141342 . A G 4256.01 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=4;QD=21.39;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4256,477,0 chrI 141802 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.8605;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1705,192,0 chrI 141835 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=3.002;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.921;QD=23.55;ReadPosRankSum=2.381;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1705,192,0 chrI 141913 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8915;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.22;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1090,117,0 chrI 141984 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=79;Dels=0.00;FS=6.189;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.013;QD=21.30;ReadPosRankSum=2.911;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1716,192,0 chrI 143085 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2864,327,0 chrI 143622 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.50;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2100,234,0 chrI 143638 . C A 2274 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.44;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2307,252,0 chrI 143679 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.44;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2230,255,0 chrI 143806 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=121;Dels=0.00;FS=2.958;HaplotypeScore=10.7457;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.052;QD=21.06;ReadPosRankSum=2.326;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2581,297,0 chrI 143852 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2902;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.038;QD=19.89;ReadPosRankSum=1.707;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2758,315,0 chrI 144684 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1478,171,0 chrI 144826 . C G 1751 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1784,207,0 chrI 145634 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1712,195,0 chrI 145720 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.57;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2399,267,0 chrI 146738 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.452;QD=20.14;ReadPosRankSum=1.557;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2027,228,0 chrI 146810 . A G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.837;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.113;QD=18.61;ReadPosRankSum=2.400;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1857,213,0 chrI 146820 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.86;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1869,210,0 chrI 147726 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=5.153;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.711;QD=22.39;ReadPosRankSum=1.696;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2160,240,0 chrI 147738 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.44;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2134,237,0 chrI 147785 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.65;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2057,231,0 chrI 149307 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=21.50;ReadPosRankSum=2.388;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2613,297,0 chrI 149467 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.37;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2604,282,0 chrI 149773 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1748,189,0 chrI 150303 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2246,243,0 chrI 150921 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2572,282,0 chrI 151010 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.52;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3024,342,0 chrI 151332 . A C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.294;QD=19.83;ReadPosRankSum=1.667;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1084,120,0 chrI 151450 . A T 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.81;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:161,18,0 chrI 151453 . G A 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.51;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:168,18,0 chrI 151460 . G C 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.21;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:155,18,0 chrI 151465 . G A 103.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.33;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:136,15,0 chrI 151475 . A G 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.94;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:104,12,0 chrI 151478 . A G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:105,12,0 chrI 151483 . A T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:9:73,9,0 chrI 151658 . G C 890 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:99:923,105,0 chrI 151740 . T C 910 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.95;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:943,105,0 chrI 151834 . C A 1643 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.62;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1676,189,0 chrI 151963 . T A 997 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.19;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1030,111,0 chrI 152004 . A G 729 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.70;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:762,87,0 chrI 152008 . A G 721 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.21;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:84:754,84,0 chrI 152155 . A G 774 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.76;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:807,87,0 chrI 152235 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.47;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1241,135,0 chrI 152239 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.21;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1128,129,0 chrI 152274 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=17.40;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1286,147,0 chrI 152291 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=16.58;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1326,147,0 chrI 152336 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.63;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2094,237,0 chrI 152709 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.041;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.462;QD=21.73;ReadPosRankSum=1.708;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3118,357,0 chrI 152728 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.96;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2866,315,0 chrI 152932 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.80;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3689,414,0 chrI 152970 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.70;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4029,444,0 chrI 153156 . A T 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.584;QD=22.11;ReadPosRankSum=1.671;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3847,426,0 chrI 153663 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.629;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.414;QD=19.97;ReadPosRankSum=1.701;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2330,264,0 chrI 153742 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.433;QD=21.91;ReadPosRankSum=1.707;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3013,339,0 chrI 153762 . A G 2471 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.59;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2504,288,0 chrI 154086 . A G 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.003;QD=22.55;ReadPosRankSum=1.687;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1747,201,0 chrI 154332 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2410,279,0 chrI 154717 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.357;QD=23.17;ReadPosRankSum=1.703;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2814,312,0 chrI 154746 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.19;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2476,267,0 chrI 155562 . T G 2984 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3017,345,0 chrI 156174 . T G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.2057;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.64;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3257,378,0 chrI 156314 . T C 2637 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=21.97;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2670,309,0 chrI 156315 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=22.27;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2706,312,0 chrI 156383 . T G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.496;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;MQRankSum=1.610;QD=17.21;ReadPosRankSum=1.691;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1513,177,0 chrI 156393 . G T 1191 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=15.88;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1224,144,0 chrI 156394 . G A 1248 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=16.42;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1281,150,0 chrI 156403 . T C 1316 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=15.67;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1349,156,0 chrI 156518 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=0.019;QD=18.19;ReadPosRankSum=1.693;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1688,195,0 chrI 156538 . T C 1638 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.61;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1671,192,0 chrI 156554 . C A 1443 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=18.27;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1476,165,0 chrI 156584 . T C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-0.253;QD=18.07;ReadPosRankSum=1.693;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1641,192,0 chrI 156614 . T A 1925 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=19.64;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1958,225,0 chrI 156615 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=19.43;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1918,225,0 chrI 156651 . A G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=-1.420;QD=16.06;ReadPosRankSum=1.576;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1816,216,0 chrI 156666 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=15.24;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1648,192,0 chrI 156835 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=25.08;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3311,363,0 chrI 156949 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=3.140;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.325;QD=22.44;ReadPosRankSum=1.707;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3085,351,0 chrI 157114 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.54;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2662,309,0 chrI 157134 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.85;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2455,270,0 chrI 157328 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.28;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1532,168,0 chrI 157339 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=19.38;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1467,159,0 chrI 157344 . A G 1389 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=19.03;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1422,156,0 chrI 157428 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=5.8384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2027,222,0 chrI 157681 . T A 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.362;QD=20.87;ReadPosRankSum=1.679;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2788,321,0 chrI 157912 . C G 2261 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2294,264,0 chrI 158089 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=7.534;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.357;QD=22.16;ReadPosRankSum=2.377;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3025,348,0 chrI 158200 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.018;QD=22.17;ReadPosRankSum=1.679;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2982,339,0 chrI 158341 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.212;QD=22.21;ReadPosRankSum=1.707;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3164,357,0 chrI 158503 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3222,354,0 chrI 158597 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.63;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3326,366,0 chrI 158641 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.49;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3227,363,0 chrI 158733 . A T 2929 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2962,321,0 chrI 158824 . G C 2517 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.07;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2550,285,0 chrI 158827 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.35;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2473,267,0 chrI 158870 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.926;QD=18.26;ReadPosRankSum=1.678;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2388,273,0 chrI 158971 . A G 2727 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.17;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2760,315,0 chrI 159164 . G C 2176 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.15;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2209,249,0 chrI 159467 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3261,375,0 chrI 160239 . G T 67.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=1;QD=4.82;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:12:100,12,0 chrI 166089 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=3;QD=1.08;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:3,19:22:6:55,6,0 chrI 166091 . A T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=3;QD=2.18;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,19:22:9:80,9,0 chrI 166095 . C T 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=3;QD=1.86;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:2,25:28:9:84,9,0 chrI 166097 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=2;QD=1.89;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,26:27:9:83,9,0 chrI 166111 . A G 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=1;QD=2.44;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:12:113,12,0 chrI 166116 . T C 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.39;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:109,12,0 chrI 166118 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.36;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:108,12,0 chrI 166120 . G T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.27;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:105,12,0 chrI 166122 . A T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.45;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:111,12,0 chrI 166128 . T A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:112,12,0 chrI 166130 . G A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:112,12,0 chrI 166133 . A G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.39;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:109,12,0 chrI 166134 . G A 81.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.55;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:114,12,0 chrI 166136 . A C 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.45;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:111,12,0 chrI 166139 . T A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:112,12,0 chrI 167310 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3313,357,0 chrI 167636 . C G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.150;QD=21.20;ReadPosRankSum=0.639;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:1,243:246:99:5215,591,0 chrI 168686 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8794;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.65;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2635,297,0 chrI 168767 . G T 2728 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.31;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2761,312,0 chrI 168772 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.35;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2878,309,0 chrI 168787 . C A 2893 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.66;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2926,315,0 chrI 168836 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5820;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.18;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3044,333,0 chrI 168976 . T G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.7500;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=1.227;QD=20.87;ReadPosRankSum=1.714;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4070,462,0 chrI 169205 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=19.06;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1024,111,0 chrI 169217 . T C 628 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=15.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:72:661,72,0 chrI 169243 . C T 218 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=13.63;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:30:251,30,0 chrI 169269 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.105;QD=21.09;ReadPosRankSum=1.680;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1425,165,0 chrI 169422 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.81;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3895,444,0 chrI 169476 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=3.001;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.434;QD=23.41;ReadPosRankSum=2.391;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3910,447,0 chrI 169638 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.0609;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.48;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4081,450,0 chrI 169689 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.75;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3595,399,0 chrI 169830 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.17;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3939,450,0 chrI 169887 . C T 3945.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.77;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3945,423,0 chrI 169992 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.78;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4305,489,0 chrI 170022 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=8.695;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.677;QD=21.86;ReadPosRankSum=2.422;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3847,435,0 chrI 170564 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.14;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1936,213,0 chrI 171389 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.44;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2036,234,0 chrI 171431 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.20;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1644,183,0 chrI 171975 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.48;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1323,150,0 chrI 172113 . C A 2059 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.67;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2092,225,0 chrI 172129 . A T 1864 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.93;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1897,207,0 chrI 172431 . A T 2696 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.51;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2729,300,0 chrI 172585 . A T 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=121;Dels=0.00;FS=2.995;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.961;QD=21.83;ReadPosRankSum=2.408;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2674,297,0 chrI 173222 . A C 3179 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.08;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3212,369,0 chrI 173339 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2298,249,0 chrI 174118 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3458,381,0 chrI 174371 . T C 2987 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.74;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3020,339,0 chrI 174746 . T G 3304.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.1086;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.65;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3304,375,0 chrI 174919 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.31;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2569,291,0 chrI 174938 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.04;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2778,315,0 chrI 175121 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.00;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3675,402,0 chrI 175281 . G A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.80;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5129,573,0 chrI 175315 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.78;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4921,540,0 chrI 176266 . A T 1423 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1456,159,0 chrI 176393 . A T 715 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:81:748,81,0 chrI 176646 . G A 2203 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2236,249,0 chrI 176694 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.91;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1587,183,0 chrI 176847 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.57;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3436,372,0 chrI 176858 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.53;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3178,360,0 chrI 176948 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=21.40;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2837,318,0 chrI 176973 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=6.257;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=1.718;QD=21.96;ReadPosRankSum=2.412;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2910,330,0 chrI 177054 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.05;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3365,366,0 chrI 177243 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.51;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3089,339,0 chrI 177340 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3727,420,0 chrI 177397 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=3.571;HaplotypeScore=20.6644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.717;QD=22.89;ReadPosRankSum=1.644;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3616,408,0 chrI 177667 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.33;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2780,312,0 chrI 177726 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.71;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2435,270,0 chrI 177737 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2489,282,0 chrI 177947 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.38;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2418,267,0 chrI 178130 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3136,351,0 chrI 178355 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.5322;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.60;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2464,273,0 chrI 178541 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=126;Dels=0.00;FS=3.487;HaplotypeScore=6.9709;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.069;QD=20.31;ReadPosRankSum=1.704;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2592,283,0 chrI 178563 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=2.699;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.068;QD=20.58;ReadPosRankSum=2.360;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2852,333,0 chrI 178616 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.421;QD=20.95;ReadPosRankSum=1.707;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2987,336,0 chrI 178751 . G T 3061 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.02;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3094,339,0 chrI 178802 . A G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=135;Dels=0.00;FS=2.570;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=1.694;QD=22.05;ReadPosRankSum=2.948;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3010,339,0 chrI 178826 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.04;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2498,282,0 chrI 178827 . A G 2544 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.85;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2577,288,0 chrI 178989 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.36;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2089,234,0 chrI 179051 . A G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=98;Dels=0.00;FS=8.689;HaplotypeScore=3.6706;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.134;QD=18.72;ReadPosRankSum=3.075;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:4,93:98:99:1868,210,0 chrI 179052 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=97;Dels=0.00;FS=5.880;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.168;QD=18.74;ReadPosRankSum=2.674;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:3,93:97:99:1851,207,0 chrI 179155 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.35;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1966,225,0 chrI 179221 . A G 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.175;DP=86;Dels=0.01;FS=18.355;HaplotypeScore=63.8077;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.728;QD=13.30;ReadPosRankSum=4.240;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:7,77:85:99:1177,138,0 chrI 179401 . T A 2214 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=20.69;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2247,255,0 chrI 179537 . G C 2939 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.4992;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=21.30;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2972,339,0 chrI 179601 . C G 2798 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=21.86;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2831,338,0 chrI 179609 . G C 2577 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=21.47;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2610,308,0 chrI 179637 . C G 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=20.28;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1716,209,0 chrI 179638 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=20.16;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1706,204,0 chrI 179667 . T G 1029 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=15.59;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1062,126,0 chrI 179683 . G A 985 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1018,114,0 chrI 179687 . G A 563 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.41;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:596,69,0 chrI 179688 . A G 557 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:590,69,0 chrI 179689 . C G 561 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.34;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:594,69,0 chrI 179690 . C T 494 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.03;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:527,63,0 chrI 179695 . C T 606 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.90;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:639,69,0 chrI 179718 . C G 551 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:584,69,0 chrI 179721 . A T 537 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:66:570,66,0 chrI 179729 . C G 687 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=8.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:84:720,84,0 chrI 179740 . G C 738 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=8.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:90:771,90,0 chrI 179745 . G A 759 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=8.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:93:792,93,0 chrI 179756 . C T 705 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=8.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:87:738,87,0 chrI 179765 . C G 475 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=6.69;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:63:508,63,0 chrI 179785 . C T 434 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=142.0767;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;QD=7.00;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:60:467,60,0 chrI 179793 . T C 517 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;QD=8.34;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:69:550,69,0 chrI 179794 . C T 514 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;QD=8.29;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:69:547,69,0 chrI 179813 . T G 513 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=45.0702;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=0;QD=10.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:69:546,69,0 chrI 179816 . A G 493 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=0;QD=10.06;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:66:526,66,0 chrI 179823 . T G 506 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=11.77;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:66:539,66,0 chrI 179832 . C A 392 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=10.89;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:54:425,54,0 chrI 179836 . T G 340 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=0;QD=10.00;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:48:373,48,0 chrI 179860 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrI 179861 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=1.09;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrI 181197 . G T 315 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=2;QD=17.50;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:348,39,0 chrI 181287 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrI 182327 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=3.11;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrI 182335 . G T 46.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;QD=5.87;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:79,9,0 chrI 182342 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;QD=4.89;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:76,9,0 chrI 182359 . C T 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=7.33;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:128,15,0 chrI 182367 . C T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=5.58;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:105,12,0 chrI 182368 . G A 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=7.02;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:124,15,0 chrI 182377 . C A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=7.64;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:132,15,0 chrI 182381 . C G 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=8.57;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:127,15,0 chrI 182382 . G T 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=8.66;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:128,15,0 chrI 182383 . C T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=7.93;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:120,15,0 chrI 182396 . G C 70.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=7.83;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:103,12,0 chrI 182397 . G A 75.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=8.39;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:108,12,0 chrI 182435 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.71;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:50,6,0 chrI 182503 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.14;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrI 182554 . A G 239.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DP=19;Dels=0.00;FS=6.422;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=2;MQRankSum=-0.224;QD=12.61;ReadPosRankSum=-2.162;SB=-1.765e+01 GT:AD:DP:GQ:PL 1/1:2,17:19:11:272,11,0 chrI 182663 . C T 50.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=6;QD=5.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:83,9,0 chrI 182667 . G A 14.20 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=6;MQRankSum=-0.736;QD=1.58;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:6,3:9:19:44,0,19 chrI 189080 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrI 189085 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.25;MQ0=1;QD=5.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:9:65,9,0 chrI 189103 . T C 58.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.26;MQ0=9;QD=4.18;SB=-2.555e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:91,12,0 chrI 189131 . C T 56.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.26;MQ0=9;QD=4.04;SB=-2.355e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:89,12,0 chrI 189170 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.08;MQ0=8;QD=1.80;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:51,6,0 chrI 190016 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=0.62;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:51,6,0 chrI 190024 . G C 93.26 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.59;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:126,15,0 chrI 190031 . G A 100.26 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=2.45;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:133,15,0 chrI 190037 . C T 96.26 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=2.01;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:15:129,15,0 chrI 190042 . A G 144.06 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;QD=2.77;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:21:177,21,0 chrI 190059 . G A 178.03 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=2.97;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:24:211,24,0 chrI 190062 . C T 203.01 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=3.33;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,61:61:27:236,27,0 chrI 190070 . G A 237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=3.82;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,62:62:30:270,30,0 chrI 190074 . T C 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=3.73;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:30:257,30,0 chrI 190075 . G A 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=3.98;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:30:272,30,0 chrI 190084 . T G 358 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=4.77;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,74:75:45:391,45,0 chrI 190089 . T C 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=5.47;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:45:383,45,0 chrI 190090 . G A 377 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=5.89;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:45:410,45,0 chrI 190091 . G C 361 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=5.64;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:45:394,45,0 chrI 190093 . A C 361 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.665;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=-0.991;QD=5.47;ReadPosRankSum=2.375;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,64:66:45:394,45,0 chrI 190114 . A G 330 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.314;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8874;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.698;QD=4.34;ReadPosRankSum=-2.418;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,74:76:42:363,42,0 chrI 190119 . T C 350 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.86;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,70:72:42:383,42,0 chrI 190189 . T C 297 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.3160;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=1.83;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:39:330,39,0 chrI 190526 . C G 5824.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.95;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:5824,663,0 chrI 190558 . T A 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=265;Dels=0.00;FS=9.131;HaplotypeScore=17.2507;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.069;QD=16.92;ReadPosRankSum=3.428;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:4,261:265:99:4483,528,0 chrI 190588 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=317;Dels=0.00;FS=10.576;HaplotypeScore=15.7149;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.307;QD=15.14;ReadPosRankSum=2.939;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:3,311:317:99:4800,540,0 chrI 190621 . A G 5461.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.175;DP=362;Dels=0.00;FS=6.265;HaplotypeScore=13.0295;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.522;QD=15.09;ReadPosRankSum=4.139;SB=-3.975e+03 GT:AD:DP:GQ:PL 1/1:6,351:362:99:5461,621,0 chrI 190636 . T C 5241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=360;Dels=0.00;FS=7.368;HaplotypeScore=11.6087;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=1.144;QD=14.56;ReadPosRankSum=2.415;SB=-3.811e+03 GT:AD:DP:GQ:PL 1/1:2,358:360:99:5241,603,0 chrI 191064 . A G 6346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=338;Dels=0.00;FS=7.581;HaplotypeScore=26.3283;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.267;QD=18.78;ReadPosRankSum=2.427;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:2,332:338:99:6346,711,0 chrI 191617 . T C 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=262;Dels=0.00;FS=6.062;HaplotypeScore=22.9640;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.678;QD=18.42;ReadPosRankSum=2.957;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:3,256:262:99:4827,543,0 chrI 191704 . G C 4134.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=20.0255;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=16.67;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,244:248:99:4134,477,0 chrI 191836 . C T 5638.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=29.2065;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.68;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5638,624,0 chrI 192073 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=16.0970;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.00;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4554,498,0 chrI 192139 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.2902;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=16.43;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2809,312,0 chrI 192169 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=15.77;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2414,270,0 chrI 192170 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=-0.430;QD=16.13;ReadPosRankSum=1.662;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2437,276,0 chrI 192182 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=16.58;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2536,285,0 chrI 192196 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=1.560;QD=16.35;ReadPosRankSum=2.380;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2338,267,0 chrI 192427 . T C 756 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.00;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:789,90,0 chrI 192429 . G C 799 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.59;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:832,93,0 chrI 192469 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.43;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:973,108,0 chrI 192531 . C T 489 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=9.7250;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=15.77;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:522,57,0 chrI 192551 . C A 72.51 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=18.5385;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=1.77;SB=-2.345e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:12:105,12,0 chrI 192618 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.59;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2836,321,0 chrI 192693 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.01;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2314,255,0 chrI 192945 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.2901;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.56;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4806,531,0 chrI 192954 . C A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.04;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:4685,543,0 chrI 193159 . C T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.3868;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.37;SB=-3.061e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5278,588,0 chrI 193260 . T C 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=237;Dels=0.00;FS=6.076;HaplotypeScore=22.3586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.064;QD=21.99;ReadPosRankSum=2.945;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:3,232:237:99:5212,588,0 chrI 193452 . G A 5166.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.98;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5166,588,0 chrI 193500 . C T 4828.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.5171;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.77;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4828,528,0 chrI 194101 . A G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=6.416;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.339;QD=17.32;ReadPosRankSum=1.694;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1644,189,0 chrI 194104 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.86;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1550,177,0 chrI 194166 . T C 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.099;QD=12.92;ReadPosRankSum=2.362;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1493,171,0 chrI 194169 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=118;Dels=0.00;FS=2.434;HaplotypeScore=4.3435;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.156;QD=12.68;ReadPosRankSum=3.294;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:4,114:118:99:1529,174,0 chrI 194241 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.27;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3054,333,0 chrI 194290 . C A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=8.3000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.35;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3308,360,0 chrI 194475 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.68;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2577,294,0 chrI 194499 . T A 2553 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.34;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2586,288,0 chrI 194626 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.88;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2252,246,0 chrI 194700 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.97;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2583,285,0 chrI 194969 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.221;QD=22.52;ReadPosRankSum=1.675;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2825,324,0 chrI 195459 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3518,408,0 chrI 195677 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=119;Dels=0.00;FS=5.289;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.096;QD=22.08;ReadPosRankSum=3.340;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2660,300,0 chrI 195872 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.33;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2869,318,0 chrI 195910 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.13;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3001,336,0 chrI 196198 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=74;Dels=0.00;FS=2.615;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.110;QD=21.80;ReadPosRankSum=2.823;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1646,186,0 chrI 196248 . G C 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.89;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,138,0 chrI 196284 . G A 852 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.52;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:885,102,0 chrI 196423 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.53;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:978,108,0 chrI 196452 . C T 671 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=33.3771;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=14.59;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:704,78,0 chrI 196500 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=13.37;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:929,105,0 chrI 196523 . T A 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.386;QD=14.98;ReadPosRankSum=1.559;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:932,108,0 chrI 196564 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.85;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1344,147,0 chrI 196578 . A G 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.866;QD=19.10;ReadPosRankSum=1.675;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1198,138,0 chrI 196587 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.74;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1158,129,0 chrI 196623 . C T 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;DP=56;Dels=0.00;FS=3.096;HaplotypeScore=4.1977;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.092;QD=15.45;ReadPosRankSum=0.218;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:5,51:56:99:898,105,0 chrI 196647 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=16.58;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:978,111,0 chrI 196805 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=21.31;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1631,180,0 chrI 196861 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=16.46;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1004,108,0 chrI 196864 . C A 905 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=41.6332;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=15.34;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:938,102,0 chrI 196884 . C T 616 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:649,75,0 chrI 196891 . G T 771 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=13.53;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:804,87,0 chrI 196929 . A G 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DP=82;Dels=0.00;FS=1.813;HaplotypeScore=74.0494;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;MQRankSum=1.608;QD=0.49;ReadPosRankSum=3.352;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:9:72,9,0 chrI 196932 . C T 950 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=71.0712;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=12.03;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:983,111,0 chrI 197024 . A G 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-1.074;QD=21.95;ReadPosRankSum=1.688;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1789,201,0 chrI 197120 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=21.93;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1700,186,0 chrI 197123 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=21.10;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1679,183,0 chrI 197225 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=22.68;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1167,129,0 chrI 197236 . G T 1193 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=22.09;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1226,135,0 chrI 197247 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=10.295;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.506;QD=19.28;ReadPosRankSum=2.369;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1209,138,0 chrI 197266 . G T 1084 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.48;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1117,126,0 chrI 197344 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.85;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:979,108,0 chrI 197350 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.02;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1174,132,0 chrI 197428 . A T 1280 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=24.15;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1313,147,0 chrI 197459 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=21.65;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1159,135,0 chrI 197484 . T C 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=0.000;QD=19.74;ReadPosRankSum=1.630;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1375,156,0 chrI 197497 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.45;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1306,150,0 chrI 197560 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=23.44;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1744,198,0 chrI 197587 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=23.17;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1516,168,0 chrI 197629 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=17.30;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1071,123,0 chrI 197646 . T G 1210 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=22.41;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1243,144,0 chrI 197656 . A G 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;MQRankSum=-1.127;QD=21.52;ReadPosRankSum=1.677;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1389,159,0 chrI 197694 . G T 1350 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=19.29;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1383,159,0 chrI 197695 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=18.86;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1353,159,0 chrI 197758 . A G 904 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=12.73;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:937,108,0 chrI 197760 . G C 899 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=12.84;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:932,108,0 chrI 197765 . C G 894 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=11.92;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:927,105,0 chrI 197770 . A G 871 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=12.27;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:904,102,0 chrI 197772 . A G 878 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=12.37;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:911,102,0 chrI 197783 . G A 743 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.93;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:87:776,87,0 chrI 197791 . A G 680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=0.767;QD=11.15;ReadPosRankSum=1.675;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:81:713,81,0 chrI 197811 . G A 518 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=11.02;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:551,63,0 chrI 197813 . T C 519 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=10.81;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:552,63,0 chrI 197819 . A G 475 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=-0.533;QD=8.96;ReadPosRankSum=1.666;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:57:508,57,0 chrI 197825 . G A 551 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=9.84;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:66:584,66,0 chrI 197873 . G A 783 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=11.19;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:816,90,0 chrI 197890 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=14.02;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1169,129,0 chrI 197908 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=13.60;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1339,156,0 chrI 197983 . T A 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;MQRankSum=1.325;QD=16.55;ReadPosRankSum=1.664;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:910,102,0 chrI 198013 . T A 796 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=18.09;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:829,90,0 chrI 198022 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=44.5523;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=17.94;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:894,102,0 chrI 198027 . C T 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.856;DP=50;Dels=0.02;FS=6.248;HaplotypeScore=2.9277;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;MQRankSum=2.732;QD=16.34;ReadPosRankSum=2.565;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:93:850,93,0 chrI 198118 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=23.89;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2303,252,0 chrI 198168 . G T 2489 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=24.89;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2522,279,0 chrI 198190 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=23.04;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1945,219,0 chrI 198215 . C A 1369 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=20.13;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1402,150,0 chrI 198232 . C G 857 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=16.17;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:890,102,0 chrI 198244 . G T 716 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=14.04;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:749,84,0 chrI 198252 . C G 566 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=12.86;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:599,69,0 chrI 198253 . T G 497 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.30;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:60:530,60,0 chrI 198259 . T C 495 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.51;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:528,60,0 chrI 198267 . A G 530 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=11.78;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:563,63,0 chrI 198279 . A G 747 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=13.11;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:780,87,0 chrI 198287 . A G 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;MQRankSum=-0.851;QD=12.34;ReadPosRankSum=1.674;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:87:761,87,0 chrI 198331 . G T 1642 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=19.55;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1675,180,0 chrI 198351 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.81;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2083,231,0 chrI 198398 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=21.78;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1449,159,0 chrI 198448 . C G 874 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=22.41;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:907,105,0 chrI 198456 . T A 908 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=23.89;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:941,105,0 chrI 198490 . G C 634 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=18.65;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:78:667,78,0 chrI 198533 . C T 452 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=12.91;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:485,54,0 chrI 198536 . C T 447 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=12.77;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:480,54,0 chrI 198560 . T C 478 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.26;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:511,57,0 chrI 198562 . G A 451 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.87;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:484,54,0 chrI 198568 . G C 342 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=10.36;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:375,42,0 chrI 198586 . A G 371 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=10.31;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:404,45,0 chrI 198605 . C T 353 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=10.09;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:386,42,0 chrI 198619 . C T 285 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.96;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:36:318,36,0 chrI 198620 . T G 261 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.04;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:294,33,0 chrI 198623 . A T 278 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.69;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:36:311,36,0 chrI 198628 . C G 270 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.38;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:36:303,36,0 chrI 198642 . T C 220 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=9.17;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:253,30,0 chrI 198648 . C T 184.03 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=8.37;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:217,24,0 chrI 198652 . A G 232 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=10.09;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:265,30,0 chrI 198657 . C T 209.01 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=9.50;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:242,27,0 chrI 198664 . A G 171.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=-1.214;QD=8.55;ReadPosRankSum=1.561;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:24:204,24,0 chrI 198675 . T C 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=5.41;SB=-8.049e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:92,12,0 chrI 198676 . C T 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=5.41;SB=-8.649e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:92,12,0 chrI 198677 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=5.59;SB=-7.249e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:94,12,0 chrI 198707 . C T 213.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=27.3912;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=13.31;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:246,27,0 chrI 198713 . C T 283 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=13.48;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:316,36,0 chrI 198851 . G C 206.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=15.85;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:27:239,27,0 chrI 198856 . T C 109.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=15.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:18:142,18,0 chrI 198932 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=0.60;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:48,6,0 chrI 198938 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=0.60;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:48,6,0 chrI 198946 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=1.50;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:77,9,0 chrI 198961 . G A 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=1.48;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:9:75,9,0 chrI 198964 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=0.70;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:50,6,0 chrI 198966 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:49,6,0 chrI 198971 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrI 198973 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrI 198976 . T C 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.73;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:46,6,0 chrI 198980 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 198981 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 198983 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 198986 . C G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.49;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:45,6,0 chrI 198988 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.21;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrI 198989 . G C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.21;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrI 198990 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 198994 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=1.78;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrI 199012 . C G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=1.76;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:47,6,0 chrI 202550 . T G 44.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.62;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:77,9,0 chrI 202563 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:80,9,0 chrI 202564 . T G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:80,9,0 chrI 202567 . G A 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.50;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:84,9,0 chrI 202571 . A C 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.50;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:84,9,0 chrI 202572 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.37;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrI 202575 . G T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.37;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrI 202579 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.50;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:76,9,0 chrI 202581 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:80,9,0 chrI 202589 . G A 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=2.09;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:76,9,0 chrI 202616 . C G 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=2.45;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:111,12,0 chrI 202618 . T C 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=2.42;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:110,12,0 chrI 202626 . A T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=2.01;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:113,12,0 chrI 202631 . G A 134.13 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=3.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:18:167,18,0 chrI 202633 . G A 131.13 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=3.28;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:18:164,18,0 chrI 202636 . C T 137.13 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=3.34;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:18:170,18,0 chrI 202663 . C T 160.06 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=42.6573;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.27;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:21:193,21,0 chrI 202664 . T C 148.06 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=42.6573;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.02;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:21:181,21,0 chrI 202692 . G T 145.06 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=2.69;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:21:178,21,0 chrI 202713 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=-0.111;QD=0.38;ReadPosRankSum=1.659;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,46:47:6:49,6,0 chrI 202718 . A T 352 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=6.77;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:42:385,42,0 chrI 202724 . A G 390 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=7.80;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:48:423,48,0 chrI 202727 . T C 392 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=7.54;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:51:425,51,0 chrI 202732 . G A 416 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=7.56;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:51:449,51,0 chrI 202763 . C G 1484 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=16.31;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1517,171,0 chrI 202801 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=20.94;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3257,351,0 chrI 202825 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=22.73;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3387,369,0 chrI 202953 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.128;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=1.371;QD=20.72;ReadPosRankSum=2.412;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2726,287,0 chrI 202957 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=5.322;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=1.265;QD=20.88;ReadPosRankSum=1.650;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2726,309,0 chrI 202977 . A T 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.336;QD=23.73;ReadPosRankSum=1.705;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3094,330,0 chrI 203049 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3914;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.42;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2796,321,0 chrI 203105 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=22.92;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2119,243,0 chrI 203111 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=21.82;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2084,237,0 chrI 203180 . T C 732 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=15.57;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:765,87,0 chrI 203181 . G A 741 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=15.77;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:774,84,0 chrI 203214 . G C 948 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=16.07;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:981,111,0 chrI 203215 . C T 819 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=13.88;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:852,99,0 chrI 203222 . A C 977 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=15.76;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1010,114,0 chrI 203283 . A T 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.104;QD=19.42;ReadPosRankSum=1.690;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1664,186,0 chrI 203301 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=16.99;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1375,159,0 chrI 203313 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=20.21;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1670,183,0 chrI 203349 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=20.94;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1729,195,0 chrI 203386 . A T 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=5.141;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;MQRankSum=-1.520;QD=21.68;ReadPosRankSum=1.697;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2158,249,0 chrI 203433 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=24.47;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2456,273,0 chrI 203458 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=24.45;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2160,240,0 chrI 203461 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=23.92;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2138,240,0 chrI 203561 . A G 1083 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=5;QD=17.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1116,132,0 chrI 203567 . G T 1041 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=3;QD=16.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1074,126,0 chrI 203588 . T C 1122 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=18.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1155,132,0 chrI 203589 . G C 1099 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=18.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1132,132,0 chrI 203590 . G A 1104 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=18.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1137,132,0 chrI 203597 . C A 557 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=15.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:75:590,75,0 chrI 203598 . T G 504 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=14.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:72:537,72,0 chrI 203599 . C A 201 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;MQRankSum=0.674;QD=5.58;ReadPosRankSum=1.636;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:30:234,30,0 chrI 203600 . A C 199 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=5.53;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:232,30,0 chrI 203604 . A G 549 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=15.25;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:75:582,75,0 chrI 203605 . C T 586 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=16.28;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:75:619,75,0 chrI 203610 . C T 609 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=12.96;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:75:642,75,0 chrI 203612 . A G 579 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=12.32;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:75:612,75,0 chrI 203615 . T C 585 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=11.70;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:75:618,75,0 chrI 203621 . C T 517 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=-1.525;QD=10.34;ReadPosRankSum=1.386;SB=-6.737e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:46:550,46,0 chrI 203622 . G A 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=11.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:75:625,75,0 chrI 203624 . A T 612 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=12.24;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:75:645,75,0 chrI 203627 . A G 591 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=11.37;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:75:624,75,0 chrI 203633 . T G 510 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=10.00;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:66:543,66,0 chrI 203639 . C A 477 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=10.15;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:60:510,60,0 chrI 203642 . G T 367 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.16;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:48:400,48,0 chrI 203645 . T C 313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.82;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:346,39,0 chrI 203646 . G A 316 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.90;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:349,39,0 chrI 203648 . T C 311 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.77;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:344,39,0 chrI 203655 . A C 228 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=-0.609;QD=6.16;ReadPosRankSum=1.639;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,36:37:30:261,30,0 chrI 203660 . C T 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.54;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:151,18,0 chrI 203668 . G C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:53,6,0 chrI 203669 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.05;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:49,6,0 chrI 203670 . T A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.34;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:54,6,0 chrI 203672 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:53,6,0 chrI 203678 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.40;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:55,6,0 chrI 203683 . T A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:56,6,0 chrI 203686 . C A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.18;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrI 203687 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.98;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:51,6,0 chrI 203690 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.38;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:55,6,0 chrI 203703 . T G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.76;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrI 203705 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.16;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:57,6,0 chrI 203711 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.56;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrI 203714 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrI 203860 . C T 870 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=21.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:903,99,0 chrI 203912 . A T 2751 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=25.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2784,312,0 chrI 203922 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=23.48;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3086,357,0 chrI 203973 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=19.50;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1554,189,0 chrI 203984 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=24.97;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1481,165,0 chrI 204012 . A G 903 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=0;QD=20.07;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:936,114,0 chrI 204023 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=18.57;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:553,66,0 chrI 204029 . T C 337 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=16.05;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:370,42,0 chrI 204035 . C T 403 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=16.12;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:436,48,0 chrI 204041 . C A 489 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=16.30;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:522,57,0 chrI 204043 . A T 480 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=16.00;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:513,57,0 chrI 204047 . T C 507 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.79;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:63:540,63,0 chrI 204050 . T C 562 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=11.02;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:66:595,66,0 chrI 204071 . G A 1150 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=14.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1183,129,0 chrI 204074 . C T 1196 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=14.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1229,132,0 chrI 204113 . T G 1710 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=14.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1743,201,0 chrI 204116 . A T 1785 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=0.350;QD=15.39;ReadPosRankSum=2.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1818,204,0 chrI 204125 . C A 1653 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=15.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1686,195,0 chrI 204126 . A G 1661 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=15.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1694,195,0 chrI 204129 . G A 1696 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=16.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1729,195,0 chrI 204131 . A C 1661 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=15.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1694,192,0 chrI 204146 . A G 1367 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;MQRankSum=-1.481;QD=15.36;ReadPosRankSum=2.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1400,168,0 chrI 204149 . G A 1308 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;MQRankSum=0.697;QD=15.03;ReadPosRankSum=1.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1341,156,0 chrI 204155 . C G 1097 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=14.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1130,135,0 chrI 204167 . C T 1019 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=15.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1052,123,0 chrI 204173 . C T 596 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=14.90;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:75:629,75,0 chrI 204174 . C T 578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=14.45;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:75:611,75,0 chrI 204176 . A G 556 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=13.90;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:72:589,72,0 chrI 204178 . G C 572 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=14.30;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:75:605,75,0 chrI 204186 . A G 446 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;MQRankSum=-1.121;QD=13.12;ReadPosRankSum=1.631;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:57:479,57,0 chrI 204188 . C T 428 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=12.97;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:57:461,57,0 chrI 204194 . T C 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=8.30;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:149,18,0 chrI 204195 . G A 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=8.37;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:150,18,0 chrI 204197 . C T 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=8.22;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:148,18,0 chrI 204200 . T A 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=8.15;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:147,18,0 chrI 204203 . C T 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=8.22;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:148,18,0 chrI 204212 . T C 42.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.14;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrI 204216 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrI 206060 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=0;QD=0.48;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,37:37:6:49,6,0 chrI 206081 . C T 13.26 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=-0.440;QD=0.35;ReadPosRankSum=-4.521;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:17,21:38:17:43,0,17 chrI 206084 . T C 21.03 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;QD=0.55;SB=14.00 GT:AD:DP:GQ:PL 1/1:0,21:38:6:52,6,0 chrI 206090 . T C 11.39 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=-0.558;QD=0.30;ReadPosRankSum=-4.815;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:17,21:38:16:41,0,16 chrI 206156 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=0;MQRankSum=0.848;QD=0.36;ReadPosRankSum=1.659;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,46:47:6:48,6,0 chrI 206165 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=0;MQRankSum=-0.277;QD=0.40;ReadPosRankSum=1.663;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,49:50:6:51,6,0 chrI 206186 . C T 48.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=1.02;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:9:81,9,0 chrI 206189 . T A 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=1.12;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:9:86,9,0 chrI 206198 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=1.20;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:80,9,0 chrI 206199 . G C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=1.07;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:75,9,0 chrI 206200 . T A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=1.22;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:81,9,0 chrI 206201 . T A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=1.27;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:83,9,0 chrI 206216 . C T 15.17 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=0;MQRankSum=1.169;QD=0.40;ReadPosRankSum=0.892;SB=-4.071e-02 GT:AD:DP:GQ:PL 0/1:13,25:38:18:45,0,18 chrI 206351 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=166;Dels=0.00;FS=20.680;HaplotypeScore=9.1446;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=1;MQRankSum=-1.345;QD=17.52;ReadPosRankSum=3.364;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:6,160:166:99:2942,336,0 chrI 206375 . C T 1289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=4;MQRankSum=0.477;QD=7.04;ReadPosRankSum=4.026;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:84,99:183:99:1319,0,1078 chrI 206381 . A G 1047.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.362;DP=190;Dels=0.00;FS=1.811;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=4;MQRankSum=-0.453;QD=5.51;ReadPosRankSum=-1.995;SB=-6.330e+02 GT:AD:DP:GQ:PL 0/1:99,91:190:99:1077,0,1322 chrI 206414 . T C 1301.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.085;DP=181;Dels=0.00;FS=0.559;HaplotypeScore=19.6623;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=3;MQRankSum=0.864;QD=7.19;ReadPosRankSum=5.187;SB=-8.060e+02 GT:AD:DP:GQ:PL 0/1:82,99:181:99:1331,0,592 chrI 206417 . T C 540.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=172;Dels=0.00;FS=1.250;HaplotypeScore=26.7604;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=3;MQRankSum=-1.668;QD=3.14;ReadPosRankSum=-5.507;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:96,73:172:99:570,0,1266 chrI 206435 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=3;QD=15.12;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1076,123,0 chrI 206441 . A G 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=3;MQRankSum=0.466;QD=14.78;ReadPosRankSum=1.666;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:90:846,90,0 chrI 206462 . T C 378 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=2;QD=11.45;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:45:411,45,0 chrI 206516 . A G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:79,9,0 chrI 206520 . T C 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.28;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrI 206522 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.28;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrI 206523 . G A 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.85;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:87,9,0 chrI 206525 . T C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.00;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:81,9,0 chrI 206527 . C G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:82,9,0 chrI 206528 . A C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.57;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:78,9,0 chrI 206549 . T C 64.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.06;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:97,12,0 chrI 206558 . T C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.00;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:72,9,0 chrI 206564 . G T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=7.83;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:103,12,0 chrI 206567 . T A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.50;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:109,12,0 chrI 206576 . A G 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.95;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:113,12,0 chrI 206580 . T A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.33;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:82,9,0 chrI 206582 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.16;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:75,9,0 chrI 206585 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:78,9,0 chrI 206591 . T C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.83;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:79,9,0 chrI 206594 . A T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.16;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:75,9,0 chrI 219596 . T A 2161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.359;DP=656;Dels=0.00;FS=6.143;HaplotypeScore=59.9611;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=6;MQRankSum=1.352;QD=3.29;ReadPosRankSum=-0.274;SB=-8.890e+02 GT:AD:DP:GQ:PL 0/1:486,170:656:99:2191,0,9479 chrI 219669 . C G 457.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=441;Dels=0.00;FS=3.074;HaplotypeScore=21.8335;MLEAC=1;MLEAF=0.500;MQ=15.26;MQ0=268;MQRankSum=2.218;QD=1.04;ReadPosRankSum=-0.724;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:327,104:441:99:487,0,2242 chrI 219683 . A G 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=406;Dels=0.00;FS=1.033;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=10.89;MQ0=304;MQRankSum=-1.564;QD=0.28;ReadPosRankSum=2.217;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:315,89:406:99:145,0,972 chrI 219693 . G A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.97;MQ0=327;MQRankSum=-1.317;QD=0.10;ReadPosRankSum=2.085;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:308,92:401:69:69,0,542 chrI 219760 . T G 463.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.881;DP=508;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=13.65;MQ0=253;MQRankSum=0.544;QD=0.91;ReadPosRankSum=0.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:376,130:508:99:493,0,1589 chrI 219774 . A G 571.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DP=531;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=14.20;MQ0=260;MQRankSum=1.248;QD=1.08;ReadPosRankSum=1.098;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:390,137:531:99:601,0,1725 chrI 219830 . C A 435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=12.0730;MLEAC=1;MLEAF=0.500;MQ=12.16;MQ0=293;MQRankSum=4.321;QD=1.00;ReadPosRankSum=0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:328,105:436:99:465,0,751 chrI 220227 . A G 901 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=91;QD=5.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:68,84:152:99:934,108,0 chrI 220264 . A T 339 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.10;MQ0=67;QD=3.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,57:91:42:372,42,0 chrI 220309 . C T 352 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=30;QD=7.04;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:42:385,42,0 chrI 221198 . T C 690 filter AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=8.60;MQ0=222;QD=2.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,281:281:84:723,84,0 chrI 222362 . C G 1480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DP=736;Dels=0.00;FS=63.737;HaplotypeScore=26.9452;MLEAC=1;MLEAF=0.500;MQ=13.55;MQ0=354;MQRankSum=0.450;QD=2.01;ReadPosRankSum=1.911;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:450,281:736:99:1510,0,1620 chrI 222458 . T C 1755.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.639;DP=887;Dels=0.00;FS=120.259;HaplotypeScore=22.2367;MLEAC=1;MLEAF=0.500;MQ=15.31;MQ0=298;MQRankSum=0.656;QD=1.98;ReadPosRankSum=-0.063;SB=-8.500e+02 GT:AD:DP:GQ:PL 0/1:561,321:887:99:1785,0,2569 chrI 223051 . A G 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=90;MQRankSum=-0.984;QD=0.34;ReadPosRankSum=1.476;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,42:182:92:92,0,638 chrI 223059 . G C 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=92;MQRankSum=-0.497;QD=0.34;ReadPosRankSum=1.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,41:171:88:88,0,536 chrI 223168 . T C 165.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=73;Dels=0.00;FS=41.508;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=4;MQRankSum=0.766;QD=2.26;ReadPosRankSum=1.461;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:50,23:73:99:195,0,705 chrI 224831 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrI 224946 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.21;MQ0=63;QD=0.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:26,39:66:9:80,9,0 chrI 225098 . A G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;DP=75;Dels=0.00;FS=9.313;HaplotypeScore=14.9039;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=34;MQRankSum=4.371;QD=0.41;ReadPosRankSum=3.611;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:49,21:75:61:61,0,386 chrI 225099 . G A 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.255;DP=67;Dels=0.00;FS=14.143;HaplotypeScore=14.9039;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=26;MQRankSum=-3.910;QD=1.09;ReadPosRankSum=-2.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,14:67:99:103,0,254 chrI 228594 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.10;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:56,6,0 chrI 228600 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.60;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrI 228612 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.72;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrI 228617 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.72;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrI 228621 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrI 228623 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrI 228629 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrI 228631 . C G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrI 228640 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.21;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrI 228642 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 228648 . A G 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.19;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:56,6,0 chrI 228653 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrI 228756 . A G 120.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=12.01;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:10:18:153,18,0 chrI 228803 . G T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DP=27;Dels=0.00;FS=53.921;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=0;MQRankSum=3.584;QD=0.49;ReadPosRankSum=-4.062;SB=0.631 GT:AD:DP:GQ:PL 0/1:19,8:27:43:43,0,388 chrI 228958 . C T 194.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.05;MQ0=13;QD=8.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:24:227,24,0 chrI 229086 . C T 267 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=8;MQRankSum=0.000;QD=7.85;ReadPosRankSum=1.600;SB=-1.078e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:36:300,36,0 chrI 229092 . A G 256 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=7;MQRankSum=0.000;QD=7.76;ReadPosRankSum=1.600;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:36:289,36,0 chrI 229098 . C T 260 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=7;QD=8.12;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:36:293,36,0 chrI 229104 . C A 263 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.28;MQ0=6;QD=8.48;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:296,36,0 chrI 229275 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229284 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229293 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229302 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229329 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229335 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 229345 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=0;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrII 64 . G C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=11;MQRankSum=0.659;QD=0.74;ReadPosRankSum=-1.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,11:39:59:59,0,159 chrII 102 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.86;MQ0=10;MQRankSum=0.212;QD=1.44;ReadPosRankSum=0.978;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,9:23:63:63,0,115 chrII 117 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=1;QD=5.33;SB=-2.991e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:9:80,9,0 chrII 121 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=0.406;QD=2.65;ReadPosRankSum=0.988;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:3,3:6:6:47,6,0 chrII 122 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=2.65;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrII 126 . G C 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=6.01;SB=-8.363e+01 GT:AD:DP:GQ:PL 1/1:0,16:20:18:153,18,0 chrII 255 . C G 717.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;DP=67;Dels=0.00;FS=2.174;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=30.41;MQ0=0;MQRankSum=0.199;QD=10.70;ReadPosRankSum=2.091;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:26,41:67:99:747,0,472 chrII 279 . T A 822 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=5;QD=18.27;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:5,40:45:90:855,90,0 chrII 300 . T C 144.13 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.95;MQ0=15;QD=5.54;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:15,11:26:18:177,18,0 chrII 307 . T C 173.06 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.37;MQ0=15;QD=6.66;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:15,11:26:21:206,21,0 chrII 391 . C A 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=7;MQRankSum=-0.313;QD=2.06;ReadPosRankSum=0.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,12:69:99:172,0,604 chrII 394 . T C 927 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=1;QD=14.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:960,108,0 chrII 444 . G C 417.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=0.938;QD=9.27;ReadPosRankSum=-1.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,27:45:99:447,0,143 chrII 465 . T C 356 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.772;DP=36;Dels=0.00;FS=61.287;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=2;MQRankSum=3.230;QD=9.89;ReadPosRankSum=3.772;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:8,28:36:42:389,42,0 chrII 490 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=13.39;MQ0=39;MQRankSum=0.972;QD=0.69;ReadPosRankSum=-0.509;SB=-6.736e-03 GT:AD:DP:GQ:PL 0/1:51,7:58:40:70,0,40 chrII 1372 . G C 1062 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=11;QD=16.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:64:99:1095,120,0 chrII 1502 . G A 344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.88;MQ0=61;MQRankSum=3.505;QD=3.31;ReadPosRankSum=4.736;SB=-6.515e-03 GT:AD:DP:GQ:PL 0/1:72,32:104:84:374,0,84 chrII 1507 . G A 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=57;MQRankSum=3.148;QD=3.04;ReadPosRankSum=4.413;SB=-1.079e-03 GT:AD:DP:GQ:PL 0/1:66,31:98:53:328,0,53 chrII 1543 . G A 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.617;DP=78;Dels=0.00;FS=65.266;HaplotypeScore=12.2297;MLEAC=2;MLEAF=1.00;MQ=13.01;MQ0=39;MQRankSum=0.438;QD=0.56;ReadPosRankSum=2.411;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:45,30:78:9:76,9,0 chrII 1547 . T C 42.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DP=93;Dels=0.00;FS=22.534;HaplotypeScore=25.4398;MLEAC=1;MLEAF=0.500;MQ=16.27;MQ0=35;MQRankSum=0.710;QD=0.45;ReadPosRankSum=3.143;SB=-4.926e-02 GT:AD:DP:GQ:PL 0/1:78,15:93:10:72,0,10 chrII 1596 . C T 1696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.099;DP=316;Dels=0.00;FS=218.571;HaplotypeScore=9.3425;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=63;MQRankSum=0.808;QD=5.37;ReadPosRankSum=0.414;SB=-5.390e+02 GT:AD:DP:GQ:PL 0/1:147,169:316:99:1726,0,802 chrII 1642 . A G 1138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=271;Dels=0.00;FS=173.009;HaplotypeScore=112.4176;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=56;MQRankSum=0.519;QD=4.20;ReadPosRankSum=2.285;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:136,116:271:99:1168,0,650 chrII 1651 . C A 279.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;DP=183;Dels=0.00;FS=166.352;HaplotypeScore=70.5028;MLEAC=1;MLEAF=0.500;MQ=19.80;MQ0=52;MQRankSum=-0.087;QD=1.52;ReadPosRankSum=-3.205;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:103,80:183:99:309,0,160 chrII 1660 . C G 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=104;Dels=0.00;FS=106.624;HaplotypeScore=3.7793;MLEAC=1;MLEAF=0.500;MQ=14.71;MQ0=48;MQRankSum=2.142;QD=0.38;ReadPosRankSum=5.617;SB=0.048 GT:AD:DP:GQ:PL 0/1:85,16:104:65:69,0,65 chrII 1661 . C T 47.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;DP=99;Dels=0.00;FS=123.523;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=13.00;MQ0=48;MQRankSum=2.583;QD=0.48;ReadPosRankSum=5.547;SB=-3.056e+00 GT:AD:DP:GQ:PL 0/1:82,15:99:17:77,0,17 chrII 1664 . A G 40.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;DP=92;Dels=0.00;FS=121.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.75;MQ0=43;MQRankSum=2.571;QD=0.44;ReadPosRankSum=5.521;SB=-3.056e+00 GT:AD:DP:GQ:PL 0/1:77,15:92:17:70,0,17 chrII 1665 . C A 36.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.762;DP=88;Dels=0.00;FS=121.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.03;MQ0=39;MQRankSum=2.571;QD=0.41;ReadPosRankSum=5.521;SB=-3.094e+00 GT:AD:DP:GQ:PL 0/1:70,18:88:14:66,0,14 chrII 1670 . A G 125.77 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.007;DP=74;Dels=0.00;FS=87.468;HaplotypeScore=4.9701;MLEAC=1;MLEAF=0.500;MQ=17.16;MQ0=20;MQRankSum=3.645;QD=1.70;ReadPosRankSum=3.036;SB=-1.318e+02 GT:AD:DP:GQ:PL 0/1:54,20:74:0:154,0,0 chrII 1691 . T C 601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=47;Dels=0.00;FS=7.191;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;MQRankSum=1.486;QD=12.79;ReadPosRankSum=3.411;SB=-7.781e+01 GT:AD:DP:GQ:PL 1/1:8,39:47:43:634,43,0 chrII 1704 . C T 238.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=69;Dels=0.00;FS=47.028;HaplotypeScore=18.1904;MLEAC=1;MLEAF=0.500;MQ=29.53;MQ0=3;MQRankSum=-4.845;QD=3.45;ReadPosRankSum=-5.698;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:32,37:69:99:268,0,445 chrII 1714 . G A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;DP=73;Dels=0.00;FS=35.941;HaplotypeScore=23.0605;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=4;MQRankSum=-2.871;QD=1.47;ReadPosRankSum=-2.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,18:73:99:137,0,581 chrII 1727 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;DP=100;Dels=0.00;FS=17.597;HaplotypeScore=2.5873;MLEAC=1;MLEAF=0.500;MQ=29.29;MQ0=7;MQRankSum=-2.560;QD=0.20;ReadPosRankSum=0.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,14:100:50:50,0,1011 chrII 1750 . A G 699.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=123;Dels=0.00;FS=34.691;HaplotypeScore=7.2110;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=6;MQRankSum=-3.529;QD=5.68;ReadPosRankSum=1.292;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:49,74:123:99:729,0,561 chrII 1769 . C T 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DP=107;Dels=0.00;FS=93.789;HaplotypeScore=26.2341;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=5;MQRankSum=2.243;QD=1.37;ReadPosRankSum=-7.014;SB=-5.395e+01 GT:AD:DP:GQ:PL 0/1:66,40:107:99:177,0,724 chrII 1771 . A G 1132 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=104;Dels=0.00;FS=2.351;HaplotypeScore=18.7145;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=7;MQRankSum=-1.754;QD=10.88;ReadPosRankSum=3.744;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:5,99:104:99:1165,132,0 chrII 1778 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.445;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9321;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=7;MQRankSum=1.218;QD=0.18;ReadPosRankSum=-3.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,11:85:45:45,0,754 chrII 1867 . A C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472;DP=133;Dels=0.00;FS=16.467;HaplotypeScore=11.1456;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=0.638;QD=12.93;ReadPosRankSum=0.951;SB=-2.001e+01 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1753,188,0 chrII 5933 . T C 99.26 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=1;QD=3.68;SB=-3.027e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:15:132,15,0 chrII 5950 . C T 48.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=31;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=1;MQRankSum=1.894;QD=1.55;ReadPosRankSum=-1.721;SB=0.897 GT:AD:DP:GQ:PL 0/1:12,19:31:15:78,0,15 chrII 5951 . A C 48.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=31;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=1;MQRankSum=2.023;QD=1.55;ReadPosRankSum=-1.851;SB=1.34 GT:AD:DP:GQ:PL 0/1:12,19:31:13:78,0,13 chrII 5953 . C T 51.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=31;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=1;MQRankSum=1.851;QD=1.65;ReadPosRankSum=-2.152;SB=1.34 GT:AD:DP:GQ:PL 0/1:12,19:31:13:81,0,13 chrII 5954 . C T 53.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;DP=31;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=1;MQRankSum=1.808;QD=1.71;ReadPosRankSum=-2.367;SB=1.34 GT:AD:DP:GQ:PL 0/1:12,19:31:13:83,0,13 chrII 5980 . C T 68.70 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=1;QD=2.64;SB=-1.368e+01 GT:AD:DP:GQ:PL 1/1:0,23:26:12:101,12,0 chrII 6098 . C T 42.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.9642;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=23;MQRankSum=-1.349;QD=1.03;ReadPosRankSum=-1.735;SB=-3.138e+01 GT:AD:DP:GQ:PL 0/1:2,39:41:12:72,0,12 chrII 6099 . A G 42.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DP=41;Dels=0.00;FS=9.542;HaplotypeScore=1.9810;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=23;MQRankSum=-1.335;QD=1.03;ReadPosRankSum=-0.351;SB=1.42 GT:AD:DP:GQ:PL 0/1:24,17:41:19:72,0,19 chrII 6139 . G A 235.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=12;MQRankSum=-1.617;QD=5.60;ReadPosRankSum=1.155;SB=-3.365e-01 GT:AD:DP:GQ:PL 1/1:2,40:42:14:268,14,0 chrII 6175 . T C 248 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=13.9155;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=1;QD=7.75;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:281,33,0 chrII 6208 . T A 331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=25;Dels=0.00;FS=22.330;HaplotypeScore=10.6183;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=-0.224;QD=13.24;ReadPosRankSum=3.000;SB=-2.002e+01 GT:AD:DP:GQ:PL 0/1:4,17:25:30:361,0,30 chrII 6228 . C G 325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=0;MQRankSum=1.715;QD=13.54;ReadPosRankSum=3.620;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:7,17:24:78:355,0,78 chrII 6279 . C T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;DP=22;Dels=0.00;FS=2.754;HaplotypeScore=16.6266;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=3;MQRankSum=1.435;QD=2.64;ReadPosRankSum=-2.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,5:22:88:88,0,106 chrII 6301 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.867;DP=19;Dels=0.00;FS=2.963;HaplotypeScore=4.8047;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=5;MQRankSum=0.800;QD=1.09;ReadPosRankSum=-3.067;SB=1.24 GT:AD:DP:GQ:PL 1/1:14,5:19:6:52,6,0 chrII 6328 . A G 103.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.954;DP=39;Dels=0.00;FS=13.018;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=16.94;MQ0=5;MQRankSum=-2.456;QD=2.64;ReadPosRankSum=-2.091;SB=2.87 GT:AD:DP:GQ:PL 1/1:12,27:39:18:136,18,0 chrII 6335 . C T 154.03 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=4;QD=4.05;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:187,24,0 chrII 6379 . A T 409 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.63;MQ0=2;QD=8.89;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:51:442,51,0 chrII 6395 . C A 442 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;QD=11.33;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:475,54,0 chrII 6396 . T G 439 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;QD=11.26;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:472,54,0 chrII 6435 . G A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=37;Dels=0.00;FS=8.915;HaplotypeScore=6.6233;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=6;MQRankSum=3.062;QD=2.87;ReadPosRankSum=4.035;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:25,12:37:78:136,0,78 chrII 6437 . C T 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;DP=38;Dels=0.00;FS=8.915;HaplotypeScore=5.8893;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=7;MQRankSum=3.021;QD=2.45;ReadPosRankSum=3.549;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:26,12:38:98:123,0,98 chrII 6438 . G C 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DP=38;Dels=0.00;FS=8.915;HaplotypeScore=5.8893;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=7;MQRankSum=3.467;QD=2.37;ReadPosRankSum=3.224;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:26,12:38:99:120,0,102 chrII 6440 . G C 181.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;DP=38;Dels=0.00;FS=5.721;HaplotypeScore=12.8559;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=7;MQRankSum=0.458;QD=4.78;ReadPosRankSum=-2.105;SB=-5.854e+01 GT:AD:DP:GQ:PL 1/1:4,33:38:2:211,2,0 chrII 6442 . C T 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;DP=38;Dels=0.00;FS=8.915;HaplotypeScore=12.8559;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=7;MQRankSum=3.102;QD=2.42;ReadPosRankSum=1.075;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:26,12:38:99:122,0,105 chrII 6444 . A G 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DP=39;Dels=0.00;FS=8.575;HaplotypeScore=14.7497;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=7;MQRankSum=3.717;QD=2.90;ReadPosRankSum=0.097;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:27,12:39:94:143,0,94 chrII 6450 . T C 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DP=40;Dels=0.00;FS=18.455;HaplotypeScore=20.3349;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=7;MQRankSum=4.031;QD=3.00;ReadPosRankSum=-0.741;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:22,18:40:78:150,0,78 chrII 6457 . C A 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;DP=38;Dels=0.00;FS=24.707;HaplotypeScore=9.7810;MLEAC=1;MLEAF=0.500;MQ=19.96;MQ0=7;MQRankSum=2.982;QD=2.03;ReadPosRankSum=0.460;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:25,13:38:94:107,0,94 chrII 6461 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.577;DP=38;Dels=0.00;FS=15.375;HaplotypeScore=4.8601;MLEAC=1;MLEAF=0.500;MQ=19.96;MQ0=7;MQRankSum=-2.391;QD=0.63;ReadPosRankSum=0.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,22:38:54:54,0,158 chrII 6498 . C T 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;DP=58;Dels=0.00;FS=39.374;HaplotypeScore=6.4489;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=7;MQRankSum=1.366;QD=2.72;ReadPosRankSum=-2.063;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:33,25:58:99:188,0,125 chrII 6680 . A G 90.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=138;Dels=0.00;FS=1.225;HaplotypeScore=138.7893;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=0;MQRankSum=3.017;QD=0.65;ReadPosRankSum=-6.051;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:49,89:138:99:120,0,552 chrII 6698 . T G 949 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-7.426;DP=202;Dels=0.00;FS=16.753;HaplotypeScore=145.2257;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=0;MQRankSum=3.168;QD=4.70;ReadPosRankSum=-1.222;SB=-8.399e+01 GT:AD:DP:GQ:PL 1/1:47,155:202:48:982,48,0 chrII 6699 . A T 1242 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=163.0701;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=0;QD=6.15;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,202:202:99:1275,158,0 chrII 6704 . T A 1288 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=233.2351;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=0;MQRankSum=-1.377;QD=5.17;ReadPosRankSum=3.823;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:5,244:249:99:1321,164,0 chrII 6709 . G C 447.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;DP=269;Dels=0.00;FS=17.726;HaplotypeScore=179.0594;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=0;MQRankSum=-7.040;QD=1.66;ReadPosRankSum=4.493;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:216,53:269:99:477,0,733 chrII 6713 . A T 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=285;Dels=0.00;FS=3.582;HaplotypeScore=196.2551;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=0;MQRankSum=-2.120;QD=0.15;ReadPosRankSum=-1.884;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,66:285:72:72,0,1134 chrII 6741 . G A 531.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.046;DP=329;Dels=0.00;FS=7.170;HaplotypeScore=279.4849;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=8.244;QD=1.61;ReadPosRankSum=3.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,174:329:99:561,0,673 chrII 6743 . C T 972.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.365;DP=323;Dels=0.00;FS=24.943;HaplotypeScore=125.3428;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=0;MQRankSum=4.336;QD=3.01;ReadPosRankSum=3.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,245:323:99:1002,0,248 chrII 6754 . A C,T 1201.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.33;MQ0=0;QD=3.92;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/2:0,223,83:306:99:1261,366,261,895,0,850 chrII 6755 . T C 782.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.606;DP=305;Dels=0.00;FS=5.705;HaplotypeScore=15.5902;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=5.126;QD=2.56;ReadPosRankSum=-1.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,223:305:99:812,0,265 chrII 6762 . C T 1214 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;DP=247;Dels=0.00;FS=12.166;HaplotypeScore=29.0292;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;MQRankSum=0.990;QD=4.91;ReadPosRankSum=1.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,232:247:99:1247,135,0 chrII 6764 . A T 727.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DP=246;Dels=0.00;FS=4.825;HaplotypeScore=40.6974;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=5.144;QD=2.96;ReadPosRankSum=0.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,165:246:99:757,0,224 chrII 6766 . A C 1134 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=242;Dels=0.00;FS=23.838;HaplotypeScore=40.6943;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;MQRankSum=1.260;QD=4.69;ReadPosRankSum=1.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:1167,126,0 chrII 6767 . A T 1143 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=38.9587;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;MQRankSum=1.556;QD=4.74;ReadPosRankSum=-0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,228:241:99:1176,126,0 chrII 6769 . C T 1161 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=38.9618;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=4.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:1194,126,0 chrII 6774 . C T 767.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.177;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=162.8564;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=0;MQRankSum=2.141;QD=3.03;ReadPosRankSum=-0.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,182:253:99:797,0,167 chrII 6779 . G C 569.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.766;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=173.2801;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=1;MQRankSum=4.537;QD=2.34;ReadPosRankSum=-2.640;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,162:243:99:599,0,172 chrII 6783 . C T 356.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.736;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=47.3713;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=2;MQRankSum=3.892;QD=1.68;ReadPosRankSum=-1.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,130:212:99:386,0,183 chrII 6787 . A C 695 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=35.6852;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=2;QD=3.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,216:217:78:728,78,0 chrII 6789 . C T 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.384;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=46.2836;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=3;MQRankSum=-2.094;QD=0.51;ReadPosRankSum=2.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,63:223:99:143,0,426 chrII 6796 . C G 606 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=28.6498;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=3;QD=3.26;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,185:186:75:639,75,0 chrII 6831 . T C 836.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DP=211;Dels=0.00;FS=16.901;HaplotypeScore=15.6642;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=16;MQRankSum=2.399;QD=3.96;ReadPosRankSum=7.700;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:80,131:211:99:866,0,364 chrII 6841 . T A 984.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=231;Dels=0.00;FS=6.596;HaplotypeScore=35.4644;MLEAC=1;MLEAF=0.500;MQ=21.16;MQ0=20;MQRankSum=1.116;QD=4.26;ReadPosRankSum=3.354;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:81,150:231:99:1014,0,571 chrII 6965 . T C 1094.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.273;DP=399;Dels=0.00;FS=1.285;HaplotypeScore=84.3423;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=1;MQRankSum=-4.701;QD=2.74;ReadPosRankSum=1.792;SB=-6.470e+02 GT:AD:DP:GQ:PL 0/1:259,134:399:99:1124,0,4666 chrII 7006 . C G 1516.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DP=325;Dels=0.00;FS=15.029;HaplotypeScore=34.6485;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=11;MQRankSum=-0.828;QD=4.66;ReadPosRankSum=1.852;SB=-8.280e+02 GT:AD:DP:GQ:PL 0/1:215,109:325:99:1546,0,3814 chrII 7044 . C T 1560.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DP=393;Dels=0.00;FS=48.501;HaplotypeScore=62.9965;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=14;MQRankSum=-3.594;QD=3.97;ReadPosRankSum=4.417;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:255,137:393:99:1590,0,4148 chrII 7075 . A G 344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DP=345;Dels=0.00;FS=6.543;HaplotypeScore=56.8777;MLEAC=1;MLEAF=0.500;MQ=29.17;MQ0=12;MQRankSum=-4.594;QD=1.00;ReadPosRankSum=0.970;SB=-4.400e+02 GT:AD:DP:GQ:PL 0/1:249,95:345:99:374,0,4118 chrII 7085 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DP=333;Dels=0.00;FS=4.311;HaplotypeScore=24.4320;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=13;MQRankSum=-5.172;QD=0.20;ReadPosRankSum=-3.114;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:243,89:333:97:97,0,4094 chrII 7100 . C T 1309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DP=318;Dels=0.00;FS=169.296;HaplotypeScore=22.2915;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=4;MQRankSum=1.672;QD=4.12;ReadPosRankSum=3.931;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:191,125:318:99:1339,0,2637 chrII 7116 . C A 2828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.254;DP=276;Dels=0.00;FS=7.422;HaplotypeScore=293.6037;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=1;MQRankSum=-0.048;QD=10.25;ReadPosRankSum=6.675;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:16,257:275:99:2861,228,0 chrII 7124 . C G 623.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;DP=259;Dels=0.00;FS=37.687;HaplotypeScore=268.7317;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=1;MQRankSum=-4.246;QD=2.41;ReadPosRankSum=-3.220;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:169,89:259:99:653,0,2216 chrII 7125 . C G 758.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;DP=257;Dels=0.00;FS=6.194;HaplotypeScore=183.5399;MLEAC=1;MLEAF=0.500;MQ=30.13;MQ0=1;MQRankSum=-0.401;QD=2.95;ReadPosRankSum=5.374;SB=-4.100e+02 GT:AD:DP:GQ:PL 0/1:153,101:257:99:788,0,2014 chrII 7129 . A C 1754.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DP=248;Dels=0.00;FS=92.718;HaplotypeScore=233.5810;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=1;MQRankSum=-5.280;QD=7.07;ReadPosRankSum=2.445;SB=-7.960e+02 GT:AD:DP:GQ:PL 0/1:63,185:248:99:1784,0,1014 chrII 7133 . T G 1746.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DP=254;Dels=0.00;FS=123.434;HaplotypeScore=288.1538;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=1;MQRankSum=-5.812;QD=6.87;ReadPosRankSum=3.043;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:67,187:254:99:1776,0,928 chrII 7138 . C T 1811.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;DP=243;Dels=0.00;FS=108.152;HaplotypeScore=18.4594;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=1;MQRankSum=-5.383;QD=7.45;ReadPosRankSum=1.031;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:62,179:243:99:1841,0,982 chrII 7141 . A G 1828.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.705;DP=244;Dels=0.00;FS=125.778;HaplotypeScore=17.0604;MLEAC=1;MLEAF=0.500;MQ=31.75;MQ0=1;MQRankSum=-4.359;QD=7.49;ReadPosRankSum=1.145;SB=-6.800e+02 GT:AD:DP:GQ:PL 0/1:58,182:244:99:1858,0,884 chrII 7150 . G C 2125.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.355;DP=248;Dels=0.00;FS=207.559;HaplotypeScore=119.7781;MLEAC=1;MLEAF=0.500;MQ=33.83;MQ0=1;MQRankSum=-5.940;QD=8.57;ReadPosRankSum=1.265;SB=-5.230e+02 GT:AD:DP:GQ:PL 0/1:65,182:248:99:2155,0,1028 chrII 7156 . A G 1349.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;DP=249;Dels=0.00;FS=103.367;HaplotypeScore=107.6610;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=1;MQRankSum=-2.393;QD=5.42;ReadPosRankSum=-2.823;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:122,126:249:99:1379,0,1997 chrII 7162 . T C 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.358;DP=254;Dels=0.00;FS=15.380;HaplotypeScore=119.2788;MLEAC=1;MLEAF=0.500;MQ=34.86;MQ0=1;MQRankSum=-1.630;QD=1.14;ReadPosRankSum=3.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,54:254:99:320,0,3016 chrII 7167 . A G 2034.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.535;DP=240;Dels=0.00;FS=235.003;HaplotypeScore=69.5777;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=1;MQRankSum=-7.212;QD=8.48;ReadPosRankSum=2.041;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:79,160:240:99:2064,0,1377 chrII 7168 . T C 2003.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DP=238;Dels=0.00;FS=248.755;HaplotypeScore=68.7890;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=1;MQRankSum=-7.653;QD=8.42;ReadPosRankSum=1.882;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:81,157:238:99:2033,0,1424 chrII 7172 . C T 1848.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;DP=254;Dels=0.00;FS=249.738;HaplotypeScore=72.2132;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=1;MQRankSum=-9.195;QD=7.28;ReadPosRankSum=0.993;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:85,169:254:99:1878,0,1451 chrII 7181 . G A 1508.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;DP=238;Dels=0.00;FS=217.338;HaplotypeScore=15.9566;MLEAC=1;MLEAF=0.500;MQ=39.00;MQ0=0;MQRankSum=-9.880;QD=6.34;ReadPosRankSum=3.238;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:100,138:238:99:1538,0,2097 chrII 7183 . T C 1532.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;DP=239;Dels=0.00;FS=227.355;HaplotypeScore=10.2989;MLEAC=1;MLEAF=0.500;MQ=39.13;MQ0=0;MQRankSum=-10.256;QD=6.41;ReadPosRankSum=2.565;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:99,140:239:99:1562,0,2134 chrII 7186 . G A 1516.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;DP=245;Dels=0.00;FS=230.889;HaplotypeScore=5.9463;MLEAC=1;MLEAF=0.500;MQ=38.82;MQ0=0;MQRankSum=-10.192;QD=6.19;ReadPosRankSum=1.428;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:100,145:245:99:1546,0,2074 chrII 7209 . A G 1093.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;DP=240;Dels=0.00;FS=184.475;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=0;MQRankSum=-12.308;QD=4.55;ReadPosRankSum=-2.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,120:240:99:1123,0,2399 chrII 7211 . C T 1265.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.419;DP=245;Dels=0.00;FS=162.132;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=0;MQRankSum=-12.408;QD=5.16;ReadPosRankSum=-3.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,129:245:99:1295,0,2514 chrII 7217 . C A 1360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=251;Dels=0.00;FS=178.517;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=42.22;MQ0=0;MQRankSum=-12.539;QD=5.42;ReadPosRankSum=-3.944;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:122,123:251:99:1390,0,2606 chrII 7273 . A G 1335.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.932;DP=226;Dels=0.00;FS=3.917;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=37.15;MQ0=1;MQRankSum=-5.875;QD=5.91;ReadPosRankSum=1.636;SB=-5.690e+02 GT:AD:DP:GQ:PL 0/1:134,92:226:99:1365,0,2198 chrII 7366 . T C 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;DP=135;Dels=0.00;FS=86.614;HaplotypeScore=18.6548;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=0;MQRankSum=-7.133;QD=2.32;ReadPosRankSum=-3.944;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:77,54:135:99:343,0,1323 chrII 7387 . G A 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.590;DP=107;Dels=0.00;FS=69.934;HaplotypeScore=4.0734;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=-6.231;QD=1.03;ReadPosRankSum=-3.173;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:77,30:107:99:140,0,1417 chrII 7393 . G T 105.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DP=104;Dels=0.00;FS=62.399;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=50.37;MQ0=0;MQRankSum=-6.569;QD=1.01;ReadPosRankSum=-2.276;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:77,27:104:99:135,0,1454 chrII 7396 . T C 91.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;DP=111;Dels=0.00;FS=51.326;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=0;MQRankSum=-6.660;QD=0.82;ReadPosRankSum=-0.491;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:86,25:111:99:121,0,1632 chrII 7402 . A G 71.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DP=104;Dels=0.00;FS=20.172;HaplotypeScore=7.6321;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-6.090;QD=0.68;ReadPosRankSum=2.372;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:85,19:104:99:101,0,1581 chrII 7403 . C G 68.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DP=104;Dels=0.00;FS=20.172;HaplotypeScore=6.6587;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-6.107;QD=0.65;ReadPosRankSum=2.532;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:85,19:104:98:98,0,1454 chrII 7404 . A G 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;DP=105;Dels=0.00;FS=20.360;HaplotypeScore=6.6587;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-6.230;QD=0.76;ReadPosRankSum=2.693;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:86,19:105:99:110,0,1511 chrII 7405 . A G 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;DP=103;Dels=0.00;FS=19.982;HaplotypeScore=6.6587;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-5.752;QD=0.83;ReadPosRankSum=2.589;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:84,19:103:99:115,0,1506 chrII 7409 . T C 121.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;DP=126;Dels=0.00;FS=7.462;HaplotypeScore=8.2361;MLEAC=1;MLEAF=0.500;MQ=49.18;MQ0=0;MQRankSum=-7.346;QD=0.96;ReadPosRankSum=-1.973;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:83,42:126:99:151,0,1372 chrII 7432 . C T 268.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654;DP=112;Dels=0.00;FS=12.203;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=45.83;MQ0=0;MQRankSum=-7.817;QD=2.39;ReadPosRankSum=-1.443;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:62,50:112:99:298,0,1021 chrII 7436 . G A 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.555;DP=112;Dels=0.00;FS=9.630;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=0;MQRankSum=-7.500;QD=2.79;ReadPosRankSum=-1.152;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:60,52:112:99:343,0,946 chrII 7481 . T C 129.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DP=86;Dels=0.00;FS=1.607;HaplotypeScore=12.5677;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=1;MQRankSum=-5.965;QD=1.50;ReadPosRankSum=1.829;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:30,54:86:99:159,0,400 chrII 7510 . G T 1262 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.8857;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=7;QD=13.28;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:1295,144,0 chrII 7549 . T C 457.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.337;DP=232;Dels=0.00;FS=3.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.04;MQ0=137;MQRankSum=2.635;QD=1.97;ReadPosRankSum=1.130;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:169,63:232:99:487,0,501 chrII 7945 . A G 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.833;DP=105;Dels=0.00;FS=1.752;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=13;MQRankSum=-3.013;QD=2.50;ReadPosRankSum=-0.724;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:66,39:105:99:292,0,956 chrII 8174 . T A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.006;DP=139;Dels=0.00;FS=93.436;HaplotypeScore=14.8306;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=43;MQRankSum=-5.968;QD=0.51;ReadPosRankSum=-2.888;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:75,64:139:99:101,0,887 chrII 8180 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=204.588;HaplotypeScore=18.1362;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=49;MQRankSum=-3.098;QD=0.11;ReadPosRankSum=-2.084;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:116,27:143:46:46,0,937 chrII 8186 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;DP=147;Dels=0.00;FS=214.777;HaplotypeScore=7.4523;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=55;MQRankSum=-3.011;QD=0.15;ReadPosRankSum=-2.478;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:115,30:147:52:52,0,894 chrII 8216 . C G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DP=146;Dels=0.00;FS=189.595;HaplotypeScore=10.2593;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=58;MQRankSum=-0.866;QD=1.01;ReadPosRankSum=3.506;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:75,68:146:99:177,0,285 chrII 8221 . G A 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.576;DP=130;Dels=0.00;FS=84.255;HaplotypeScore=8.7366;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=56;MQRankSum=-1.884;QD=1.81;ReadPosRankSum=3.841;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:58,72:130:99:265,0,221 chrII 8222 . T C 234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DP=127;Dels=0.00;FS=96.047;HaplotypeScore=7.1592;MLEAC=1;MLEAF=0.500;MQ=17.96;MQ0=56;MQRankSum=-2.333;QD=1.84;ReadPosRankSum=4.645;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:58,69:127:99:264,0,181 chrII 8238 . T C 309 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=107;Dels=0.00;FS=14.065;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=56;MQRankSum=-1.189;QD=2.89;ReadPosRankSum=1.664;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:43,64:107:42:342,42,0 chrII 8250 . A G 376 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=47;QD=3.72;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:45,56:101:51:409,51,0 chrII 8253 . C T 476 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=42;QD=4.91;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:39,57:97:60:509,60,0 chrII 8285 . G T 487 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=11;QD=6.16;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:9,70:79:60:520,60,0 chrII 8315 . G A 276 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=5.21;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:39:309,39,0 chrII 8316 . A T 278 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=1;QD=5.05;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:39:311,39,0 chrII 8317 . A G 275 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=1;QD=4.91;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:39:308,39,0 chrII 8328 . G C 498 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=6.07;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:60:531,60,0 chrII 8331 . C T 724 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;QD=8.23;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:84:757,84,0 chrII 9535 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=24.89;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2821,291,0 chrII 9812 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.09;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3011,318,0 chrII 10621 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3152,324,0 chrII 12359 . T G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.340;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.253;QD=23.35;ReadPosRankSum=1.648;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3829,426,0 chrII 15222 . T A 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.346;QD=25.56;ReadPosRankSum=1.660;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3706,390,0 chrII 15510 . G T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.23;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3779,399,0 chrII 15518 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.69;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3857,408,0 chrII 15901 . G T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.7019;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.20;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4511,466,0 chrII 16380 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.89;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4396,457,0 chrII 16392 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=194;Dels=0.00;FS=7.420;HaplotypeScore=8.7395;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.109;QD=22.09;ReadPosRankSum=2.347;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4286,456,0 chrII 19836 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.61;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3436,355,0 chrII 19851 . T G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=6.629;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.009;QD=21.46;ReadPosRankSum=2.415;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3081,333,0 chrII 19967 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.3935;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.75;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3563,381,0 chrII 26500 . A C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.93;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3462,375,0 chrII 26815 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.34;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3456,369,0 chrII 28285 . T G 73.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.067;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.762;QD=8.17;ReadPosRankSum=-1.666;SB=2.49 GT:AD:DP:GQ:PL 1/1:2,7:9:12:106,12,0 chrII 28287 . T G 59.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.611;QD=4.96;ReadPosRankSum=-2.256;SB=2.50 GT:AD:DP:GQ:PL 1/1:2,10:12:12:92,12,0 chrII 28290 . T G 115.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=18.865;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.057;QD=5.23;ReadPosRankSum=1.999;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:18:148,18,0 chrII 29490 . G T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.8586;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=23.80;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3784,397,0 chrII 29530 . A C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=135;Dels=0.00;FS=2.457;HaplotypeScore=8.1621;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.918;QD=20.70;ReadPosRankSum=2.948;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2827,303,0 chrII 30012 . C T 2229 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=10;QD=19.22;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:9,107:116:99:2262,258,0 chrII 30050 . A G 1245 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254;DP=151;Dels=0.00;FS=3.713;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=64;MQRankSum=1.135;QD=8.25;ReadPosRankSum=-0.657;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:40,108:151:99:1278,144,0 chrII 30210 . T C 431 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=48;Dels=0.00;FS=49.070;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.25;MQ0=20;MQRankSum=3.402;QD=8.98;ReadPosRankSum=2.840;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:5,42:48:48:464,48,0 chrII 30848 . C G 335 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=51;QD=4.59;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:31,42:73:51:368,51,0 chrII 31193 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=6.37;MQ0=97;MQRankSum=1.638;QD=0.16;ReadPosRankSum=0.000;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:89,16:105:46:47,0,46 chrII 31198 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.67;MQ0=91;MQRankSum=2.072;QD=0.13;ReadPosRankSum=-1.133;SB=-6.315e-03 GT:AD:DP:GQ:PL 0/1:84,16:101:43:43,0,45 chrII 31236 . A G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.87;MQ0=90;MQRankSum=2.887;QD=0.31;ReadPosRankSum=-0.623;SB=0.258 GT:AD:DP:GQ:PL 0/1:93,14:107:39:63,0,39 chrII 31242 . A G 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.28;MQ0=88;MQRankSum=1.009;QD=0.36;ReadPosRankSum=0.053;SB=0.205 GT:AD:DP:GQ:PL 0/1:91,14:106:40:68,0,40 chrII 31253 . C A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.61;MQ0=83;MQRankSum=1.449;QD=0.43;ReadPosRankSum=1.071;SB=0.079 GT:AD:DP:GQ:PL 0/1:84,15:100:47:73,0,47 chrII 31260 . A G 75.51 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.37;MQ0=81;QD=0.76;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:70,28:99:12:108,12,0 chrII 31264 . A G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=12.46;MQ0=83;MQRankSum=0.106;QD=0.10;ReadPosRankSum=1.164;SB=0.965 GT:AD:DP:GQ:PL 0/1:85,18:104:40:40,0,48 chrII 31480 . A G 552 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.810;DP=148;Dels=0.00;FS=12.095;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=22;MQRankSum=3.862;QD=3.73;ReadPosRankSum=0.251;SB=-2.279e+02 GT:AD:DP:GQ:PL 1/1:74,74:148:66:585,66,0 chrII 31486 . C T 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.948;DP=135;Dels=0.00;FS=14.745;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=17.02;MQ0=25;MQRankSum=2.833;QD=3.24;ReadPosRankSum=0.752;SB=-2.575e+02 GT:AD:DP:GQ:PL 1/1:66,65:135:51:471,51,0 chrII 31525 . T C 221.01 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=43;QD=4.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:26,26:52:27:254,27,0 chrII 31643 . T G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.46;MQ0=68;MQRankSum=0.610;QD=0.31;ReadPosRankSum=2.209;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:112,34:148:9:78,9,0 chrII 31645 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.51;MQ0=67;MQRankSum=0.931;QD=0.32;ReadPosRankSum=2.078;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:108,36:145:9:79,9,0 chrII 31648 . C A 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.959;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.36;MQ0=66;MQRankSum=0.765;QD=0.69;ReadPosRankSum=2.398;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:105,39:144:15:132,15,0 chrII 31676 . A G 192.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.190;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=8.02;MQ0=79;MQRankSum=0.401;QD=1.33;ReadPosRankSum=0.965;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:105,39:144:24:225,24,0 chrII 31742 . T G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.66;MQ0=124;QD=0.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:107,20:127:6:54,6,0 chrII 34256 . G C 110.26 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.68;MQ0=29;QD=1.90;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:7,51:58:15:143,15,0 chrII 35631 . C T 82.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=13.71;SB=-5.776e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:115,15,0 chrII 35642 . G T 79.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=13.21;SB=-4.976e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:112,15,0 chrII 35660 . T C 79.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=13.21;SB=-5.176e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:112,15,0 chrII 35672 . G T 83.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=13.88;SB=-5.676e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:116,15,0 chrII 35688 . T G 82.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=13.71;SB=-5.776e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:115,15,0 chrII 35840 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrII 36362 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.01;FS=5.097;HaplotypeScore=12.0693;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.054;QD=21.29;ReadPosRankSum=1.661;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2119,222,0 chrII 36366 . A T 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=5.077;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.084;QD=20.85;ReadPosRankSum=1.698;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2181,228,0 chrII 36389 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=21.05;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2622,282,0 chrII 36492 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8020;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.35;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2181,228,0 chrII 36830 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.35;ReadPosRankSum=1.646;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1821,198,0 chrII 37424 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.8450;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.18;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4990,546,0 chrII 37454 . C T 5754.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.78;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5754,595,0 chrII 37628 . C T 5679.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.17;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5679,595,0 chrII 38273 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=16.13;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2920,312,0 chrII 38779 . C A 233.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.64;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:266,27,0 chrII 38800 . G A 110.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=12.25;SB=-2.920e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:143,15,0 chrII 38816 . G A 112.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.03;SB=-2.514e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:145,15,0 chrII 39234 . A T 2431 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.32;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2464,255,0 chrII 40260 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3332,340,0 chrII 49603 . A G 5714.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.62;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5714,621,0 chrII 49999 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=166;Dels=0.00;FS=5.676;HaplotypeScore=14.2350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.583;QD=22.97;ReadPosRankSum=2.896;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3813,411,0 chrII 54156 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.537;QD=23.57;ReadPosRankSum=1.689;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3819,408,0 chrII 57715 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.81;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3809,400,0 chrII 59164 . G C 3641.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.04;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3641,399,0 chrII 59755 . T C 648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=37;Dels=0.00;FS=4.890;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.171;QD=17.51;ReadPosRankSum=1.639;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:681,75,0 chrII 63857 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.027;QD=24.58;ReadPosRankSum=1.705;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3253,348,0 chrII 64291 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3074,318,0 chrII 64716 . C G 2603 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.33;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2636,282,0 chrII 65527 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.3269;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.66;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2632,276,0 chrII 66829 . C A 1276 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1309,135,0 chrII 68834 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7601;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.72;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3832,400,0 chrII 69772 . A G 5615.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.0533;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.41;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5615,598,0 chrII 71431 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.01;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3654,390,0 chrII 72395 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.02;FS=0.000;HaplotypeScore=28.9943;MLEAC=2;MLEAF=1.00;MQ=63.28;MQ0=0;QD=9.31;SB=-3.745e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:2734,291,0 chrII 72663 . T C 5647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=28.4169;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.302;QD=18.58;ReadPosRankSum=1.697;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:1,298:304:99:5647,604,0 chrII 73337 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.61;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2610,279,0 chrII 73354 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.78;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2568,270,0 chrII 73448 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=3.979;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.859;QD=22.61;ReadPosRankSum=1.702;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2633,276,0 chrII 73470 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=2.773;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.392;QD=22.11;ReadPosRankSum=2.405;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2465,270,0 chrII 73697 . A C 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=236;Dels=0.00;FS=7.712;HaplotypeScore=15.8463;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.478;QD=23.08;ReadPosRankSum=2.324;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5446,591,0 chrII 73758 . G T 5640.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.83;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5640,604,0 chrII 73871 . C T 5388.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.6419;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.45;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5388,559,0 chrII 73943 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.53;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4393,471,0 chrII 74102 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3647,384,0 chrII 74189 . T C 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=182;Dels=0.00;FS=2.827;HaplotypeScore=14.3875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.371;QD=24.31;ReadPosRankSum=2.396;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4425,474,0 chrII 74688 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4425,469,0 chrII 74739 . T G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3769,402,0 chrII 74853 . A T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.94;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3791,414,0 chrII 74920 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.40;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2139,225,0 chrII 75097 . T A 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=99.8966;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=0.161;QD=13.34;ReadPosRankSum=1.490;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1180,132,0 chrII 75103 . T A 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400;DP=80;Dels=0.00;FS=6.928;HaplotypeScore=49.3792;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=2.854;QD=0.49;ReadPosRankSum=-3.816;SB=-9.797e+01 GT:AD:DP:GQ:PL 1/1:59,21:80:9:71,9,0 chrII 75564 . C T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5204,541,0 chrII 75924 . C T 4649.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.0169;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.86;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4649,498,0 chrII 76203 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.583;QD=22.49;ReadPosRankSum=1.661;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4409,483,0 chrII 76212 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.76;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4461,466,0 chrII 76314 . T G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.402;QD=24.31;ReadPosRankSum=1.701;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5470,612,0 chrII 76824 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2904,324,0 chrII 76869 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.71;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2913,300,0 chrII 76947 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.99;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3698,393,0 chrII 77223 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.91;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2759,303,0 chrII 77239 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.18;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2676,270,0 chrII 77259 . G T 2605 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.35;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2638,270,0 chrII 79609 . T C 2979 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3012,318,0 chrII 83698 . C T 5717.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5717,616,0 chrII 85261 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.03;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4061,444,0 chrII 89547 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.330;HaplotypeScore=10.5009;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.293;QD=24.94;ReadPosRankSum=1.675;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4564,481,0 chrII 93811 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3798,405,0 chrII 94667 . A T 3169 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3202,342,0 chrII 95270 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2171,234,0 chrII 95731 . G T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.6742;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.32;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3770,396,0 chrII 96328 . A G 1238 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.97;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1271,135,0 chrII 97999 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3804,411,0 chrII 101490 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.74;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2193,246,0 chrII 102053 . T C 5716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=312;Dels=0.00;FS=13.576;HaplotypeScore=15.7619;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.084;QD=18.32;ReadPosRankSum=2.964;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:3,307:312:99:5716,618,0 chrII 106835 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.0819;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.29;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3759,388,0 chrII 107113 . T C 2966 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4243;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.49;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2999,330,0 chrII 107123 . A T 2608 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.03;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2641,279,0 chrII 107124 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=21.30;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2631,282,0 chrII 108452 . T A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.03;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3780,388,0 chrII 108472 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.87;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3437,357,0 chrII 108764 . T C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0607;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.450;QD=24.82;ReadPosRankSum=1.650;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3210,342,0 chrII 108821 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3096,324,0 chrII 109094 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.793;QD=23.60;ReadPosRankSum=1.700;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2558,279,0 chrII 109165 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.438;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.460;QD=23.84;ReadPosRankSum=1.678;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3085,339,0 chrII 112335 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6496;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=27.05;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2846,297,0 chrII 112510 . C G 4758.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.44;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4758,499,0 chrII 112591 . C A 2909 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.08;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2942,306,0 chrII 112592 . C A 2936 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.97;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2969,306,0 chrII 112699 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.9765;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.799;QD=23.09;ReadPosRankSum=1.713;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4202,450,0 chrII 114665 . C A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4437,463,0 chrII 114766 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.186;QD=24.13;ReadPosRankSum=1.693;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,176:182:99:4391,477,0 chrII 115774 . G A 4949.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4949,514,0 chrII 116038 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.97;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3788,396,0 chrII 116084 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.05;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3619,378,0 chrII 116102 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.92;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3879,400,0 chrII 116106 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=179;Dels=0.00;FS=6.084;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.556;QD=20.48;ReadPosRankSum=2.938;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3666,390,0 chrII 116143 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.30;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3812,400,0 chrII 116518 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=24.15;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4805,499,0 chrII 116536 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=24.18;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4932,520,0 chrII 116701 . C T 3808.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.51;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3808,414,0 chrII 116704 . T C 3779.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=22.36;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3779,402,0 chrII 116707 . A T 3680.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=173;Dels=0.00;FS=5.939;HaplotypeScore=5.1350;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.704;QD=21.27;ReadPosRankSum=2.960;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3680,402,0 chrII 116832 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.571;QD=20.59;ReadPosRankSum=1.713;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3748,402,0 chrII 116848 . G T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=160.0123;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=18.96;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3546,367,0 chrII 116850 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=160.1901;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=18.49;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3384,354,0 chrII 116939 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.661;QD=19.13;ReadPosRankSum=-0.268;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3749,385,0 chrII 116947 . T G 4290.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.6084;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.56;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4290,462,0 chrII 117595 . T C 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=217;Dels=0.00;FS=2.846;HaplotypeScore=14.4255;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.334;QD=23.07;ReadPosRankSum=2.404;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5006,532,0 chrII 117972 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.2934;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.35;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4529,480,0 chrII 118370 . A G 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.318;QD=23.65;ReadPosRankSum=1.715;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4754,502,0 chrII 118457 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.18;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4594,501,0 chrII 118818 . C A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.93;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3925,406,0 chrII 118921 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.36;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4057,427,0 chrII 118953 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.22;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3399,363,0 chrII 118959 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=7.3118;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.72;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3386,360,0 chrII 119103 . T G 2853 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.82;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2886,309,0 chrII 119247 . A C 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=58;Dels=0.00;FS=4.181;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=22.24;ReadPosRankSum=1.606;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,54:58:99:1323,141,0 chrII 119499 . A G 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=5.735;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.317;QD=23.86;ReadPosRankSum=1.696;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4582,507,0 chrII 119604 . A G 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=231;Dels=0.00;FS=5.765;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.227;QD=20.23;ReadPosRankSum=2.847;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:4673,519,0 chrII 119739 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.70;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4077,435,0 chrII 120170 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.33;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2977,309,0 chrII 120291 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=3.020;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.152;QD=24.23;ReadPosRankSum=2.403;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2577,282,0 chrII 120369 . G C 2416 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.69;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2449,264,0 chrII 120427 . C T 2455 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=24.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2488,258,0 chrII 120430 . G A 2378 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=23.54;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2411,252,0 chrII 120437 . C A 2281 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.52;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2314,252,0 chrII 120585 . A G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=106;Dels=0.00;FS=10.224;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.563;QD=21.99;ReadPosRankSum=2.874;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:3,101:106:99:2364,264,0 chrII 120630 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.81;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2365,240,0 chrII 120701 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.65;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2411,258,0 chrII 120726 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.73;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2533,264,0 chrII 120888 . G C 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1616,177,0 chrII 121101 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1813,186,0 chrII 121194 . G A 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.165;QD=23.87;ReadPosRankSum=-1.463;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2850,274,0 chrII 121421 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2887,297,0 chrII 121716 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3232,351,0 chrII 121809 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.80;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2662,279,0 chrII 121848 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.75;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2731,288,0 chrII 121908 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.52;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3703,385,0 chrII 123008 . G A 5593.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.9882;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.90;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5593,606,0 chrII 123103 . T A 5480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=236;Dels=0.00;FS=7.483;HaplotypeScore=18.2790;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.567;QD=23.22;ReadPosRankSum=2.418;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5480,577,0 chrII 123311 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.52;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4187,439,0 chrII 123320 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.638;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.185;QD=21.19;ReadPosRankSum=1.611;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3645,405,0 chrII 123339 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.80;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3618,379,0 chrII 123764 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.85;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3229,345,0 chrII 123800 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.46;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3335,345,0 chrII 123940 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.18;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3232,339,0 chrII 124174 . C G 2829 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.10;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2862,306,0 chrII 124193 . C A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.39;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3291,345,0 chrII 124286 . C A 2318 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2351,249,0 chrII 124505 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.343;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.523;QD=22.89;ReadPosRankSum=1.662;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3433,378,0 chrII 124574 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.755;QD=21.55;ReadPosRankSum=1.688;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3384,366,0 chrII 124616 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.43;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2773,291,0 chrII 124617 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.11;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2727,294,0 chrII 124677 . T C 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.00;FS=6.118;HaplotypeScore=6.1686;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.138;QD=21.41;ReadPosRankSum=2.395;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2924,309,0 chrII 124932 . T C 5151.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.07;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5151,552,0 chrII 124959 . A C 4624.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.23;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4624,487,0 chrII 124966 . A T 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=218;Dels=0.00;FS=6.706;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=1.436;QD=21.64;ReadPosRankSum=2.359;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4717,487,0 chrII 125022 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=194;Dels=0.00;FS=2.971;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.070;QD=21.26;ReadPosRankSum=2.424;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4124,438,0 chrII 125552 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3075,324,0 chrII 126130 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.10;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1341,141,0 chrII 126263 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.8981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.183;QD=24.38;ReadPosRankSum=1.704;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3056,327,0 chrII 126335 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.40;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4724,522,0 chrII 126692 . G T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.34;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3370,357,0 chrII 126836 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3865,417,0 chrII 127964 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.0934;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.95;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4766,513,0 chrII 128257 . A G 6423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=9.5619;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.923;QD=23.36;ReadPosRankSum=1.681;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6423,682,0 chrII 128282 . G A 6378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.201;QD=23.19;ReadPosRankSum=0.291;SB=-3.061e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6378,651,0 chrII 128479 . T G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=3.354;HaplotypeScore=3.2536;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.643;QD=20.29;ReadPosRankSum=-0.132;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,209:214:99:4342,463,0 chrII 128480 . T A 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=210;Dels=0.00;FS=3.006;HaplotypeScore=3.9876;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.053;QD=21.02;ReadPosRankSum=2.368;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4415,460,0 chrII 128547 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=168;Dels=0.00;FS=3.024;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.201;QD=21.20;ReadPosRankSum=2.420;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3561,378,0 chrII 128669 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.916;QD=22.44;ReadPosRankSum=1.623;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4308,474,0 chrII 129254 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.05;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4126,427,0 chrII 129308 . T A 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=6.569;HaplotypeScore=9.3083;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.036;QD=23.97;ReadPosRankSum=2.392;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4122,447,0 chrII 129347 . G A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.74;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3870,414,0 chrII 129386 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=6.576;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.571;QD=23.78;ReadPosRankSum=2.406;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:4090,433,0 chrII 129437 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.26;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4269,451,0 chrII 129668 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7518;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.46;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4042,441,0 chrII 129692 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.04;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3549,372,0 chrII 129791 . T A 4922.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.33;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4922,543,0 chrII 130349 . G A 5925.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.80;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5925,625,0 chrII 130370 . G T 5568.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.45;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5568,589,0 chrII 130407 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.6548;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.418;QD=20.74;ReadPosRankSum=2.423;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3878,426,0 chrII 130769 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.55;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4443,477,0 chrII 130988 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=171;Dels=0.00;FS=13.719;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.252;QD=23.40;ReadPosRankSum=3.408;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:4002,429,0 chrII 131020 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.97;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4369,468,0 chrII 131051 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.79;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4057,444,0 chrII 131705 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.67;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4292,451,0 chrII 131783 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.17;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4426,483,0 chrII 132280 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.196;QD=22.53;ReadPosRankSum=1.702;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2646,288,0 chrII 132482 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.52;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3854,405,0 chrII 132564 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.52;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3507,393,0 chrII 132576 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.97;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3735,396,0 chrII 132654 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.7924;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.62;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3840,411,0 chrII 132945 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.78;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4795,508,0 chrII 132975 . T A 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=203;Dels=0.00;FS=9.424;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=2.411;QD=21.30;ReadPosRankSum=2.906;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4324,465,0 chrII 133163 . G C 6652.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.0874;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.55;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:0,266:271:99:6652,703,0 chrII 133239 . C T 6814.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=26.31;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6814,718,0 chrII 133355 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=217;Dels=0.00;FS=9.874;HaplotypeScore=28.3272;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.314;QD=18.53;ReadPosRankSum=2.427;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:4021,459,0 chrII 133595 . A G 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=243;Dels=0.00;FS=7.276;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.238;QD=22.05;ReadPosRankSum=2.389;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5358,588,0 chrII 133612 . A G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.4142;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.036;QD=20.61;ReadPosRankSum=1.699;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4328,483,0 chrII 133742 . C T 3935.01 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3132;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3935,403,0 chrII 133779 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.88;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3318,340,0 chrII 133938 . A C 759 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=61.67;MQ0=0;QD=23.72;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:87:792,87,0 chrII 134090 . A G 2136 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2169,234,0 chrII 135214 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4382,454,0 chrII 135630 . T A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3323,360,0 chrII 135667 . A C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.8793;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.467;QD=24.09;ReadPosRankSum=1.705;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3092,327,0 chrII 135827 . G A 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.064;QD=22.21;ReadPosRankSum=-0.122;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2565,261,0 chrII 135898 . A T 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.631;QD=20.77;ReadPosRankSum=1.705;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2712,294,0 chrII 135912 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.68;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2722,291,0 chrII 135923 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.58;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2281,246,0 chrII 135925 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.34;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2392,249,0 chrII 136582 . C G 1438 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.15;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1471,156,0 chrII 136632 . T G 1847 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2075;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.01;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1880,201,0 chrII 136840 . A T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2914;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.92;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4122,433,0 chrII 137272 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.5232;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.82;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:4239,453,0 chrII 137341 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.87;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4985,514,0 chrII 137745 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.68;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1572,180,0 chrII 137801 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=26.37;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1747,183,0 chrII 137859 . T G 1434 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.90;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1467,156,0 chrII 137868 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.88;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1543,168,0 chrII 137948 . A G 3023 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.73;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3056,321,0 chrII 138318 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.78;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1754,189,0 chrII 138346 . T C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9170;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.249;QD=22.35;ReadPosRankSum=2.397;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2134,231,0 chrII 138529 . G T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8367;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.58;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4571,481,0 chrII 138695 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=6.829;HaplotypeScore=13.0252;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.288;QD=22.85;ReadPosRankSum=2.407;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4021,444,0 chrII 138734 . C T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.2752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4874,520,0 chrII 138835 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4165;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.260;QD=23.36;ReadPosRankSum=1.642;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3574,384,0 chrII 139079 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.029;DP=164;Dels=0.00;FS=10.868;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.058;QD=21.11;ReadPosRankSum=4.146;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:6,155:164:99:3462,384,0 chrII 139895 . T C 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=3.011;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.805;QD=23.97;ReadPosRankSum=2.363;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4747,522,0 chrII 140021 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.80;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3974,418,0 chrII 140061 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=5.315;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.396;QD=22.38;ReadPosRankSum=1.687;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3447,366,0 chrII 140131 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3716;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3230,342,0 chrII 140383 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.457;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.482;QD=23.28;ReadPosRankSum=1.680;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3152,351,0 chrII 140643 . C A 5139.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1114;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.95;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5139,529,0 chrII 140863 . G T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.30;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3600,396,0 chrII 141015 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=11.4864;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.54;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3199,330,0 chrII 141175 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.50;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3478,372,0 chrII 141191 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=20.57;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3118,339,0 chrII 141207 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.353;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.012;QD=18.97;ReadPosRankSum=1.660;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2783,297,0 chrII 141215 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.41;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2436,267,0 chrII 141553 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.35;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3206,333,0 chrII 141579 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.25;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2880,303,0 chrII 141987 . A T 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.325;QD=21.46;ReadPosRankSum=1.664;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2222,237,0 chrII 142133 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.90;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1851,198,0 chrII 142181 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.72;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2373,258,0 chrII 142186 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.48;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2310,246,0 chrII 142208 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.56;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2418,246,0 chrII 142364 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=4.017;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.876;QD=24.94;ReadPosRankSum=1.672;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4340,468,0 chrII 142625 . C T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8702;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.52;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4609,507,0 chrII 142804 . C G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3904,417,0 chrII 142980 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3189,333,0 chrII 143298 . A T 2275 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.20;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2308,243,0 chrII 143327 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=17.59;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1845,204,0 chrII 143335 . C G 1825 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.43;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1858,198,0 chrII 143478 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.38;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1957,204,0 chrII 143491 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.61;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1661,177,0 chrII 143518 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.96;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1455,159,0 chrII 143613 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.40;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2206,237,0 chrII 143759 . A T 1113 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.68;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1146,129,0 chrII 144151 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2924,300,0 chrII 144820 . T G 4621.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.43;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4621,513,0 chrII 144853 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.41;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4611,504,0 chrII 144937 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=206;Dels=0.00;FS=3.032;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.072;QD=22.62;ReadPosRankSum=2.426;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4660,501,0 chrII 144991 . A G 5354.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5354,562,0 chrII 145108 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.868;HaplotypeScore=10.1670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.471;QD=22.78;ReadPosRankSum=1.652;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3987,438,0 chrII 145474 . A G 5968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=253;Dels=0.00;FS=9.776;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.417;QD=23.59;ReadPosRankSum=2.861;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:5968,640,0 chrII 145486 . A G 5665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=3.263;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.103;QD=22.75;ReadPosRankSum=1.718;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5665,613,0 chrII 145823 . A T 1479 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8353;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1512,153,0 chrII 145934 . G A 218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=20;Dels=0.05;FS=12.041;HaplotypeScore=15.6747;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=1;MQRankSum=1.519;QD=10.90;ReadPosRankSum=1.519;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:1,15:19:30:251,30,0 chrII 145980 . G C 1092 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1125,123,0 chrII 146099 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=15.14;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:881,90,0 chrII 146107 . C A 738 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.30;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:78:771,78,0 chrII 146113 . A T 746 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=11.48;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:78:779,78,0 chrII 146114 . C T 731 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=11.25;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:78:764,78,0 chrII 146129 . T A 1170 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=13.60;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1203,126,0 chrII 146169 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.05;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2071,222,0 chrII 146217 . T G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.532;QD=22.94;ReadPosRankSum=2.241;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2740,297,0 chrII 146248 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=4.991;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.147;QD=23.06;ReadPosRankSum=1.635;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3297,351,0 chrII 146312 . C G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.55;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3856,432,0 chrII 146333 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=10.9417;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.98;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3537,369,0 chrII 146444 . C T 5816.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.07;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5816,619,0 chrII 146609 . G A 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=190;Dels=0.00;FS=4.794;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.748;QD=23.96;ReadPosRankSum=-0.419;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4552,462,0 chrII 146672 . G T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.63;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3282,351,0 chrII 146699 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.79;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3041,315,0 chrII 146992 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.73;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2992,312,0 chrII 147197 . A T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.60;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3354,343,0 chrII 147484 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2954,309,0 chrII 148172 . C T 5585.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.39;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5585,583,0 chrII 148327 . A T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.2381;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.31;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5177,541,0 chrII 148429 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.8709;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5040,555,0 chrII 148600 . T A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3431,352,0 chrII 149026 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.06;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3492,372,0 chrII 149400 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=198;Dels=0.00;FS=3.288;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.839;QD=22.82;ReadPosRankSum=1.696;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,193:198:99:4518,478,0 chrII 149696 . A C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=180;Dels=0.00;FS=3.018;HaplotypeScore=11.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.062;QD=24.12;ReadPosRankSum=2.394;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4342,454,0 chrII 149872 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4194,456,0 chrII 150200 . A T 2365 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2398,243,0 chrII 150422 . A T 1706 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1739,186,0 chrII 150513 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.92;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2418,255,0 chrII 150781 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.470;QD=21.39;ReadPosRankSum=2.343;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3006,330,0 chrII 151212 . A T 2441 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.2416;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.39;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2474,267,0 chrII 151397 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=138;Dels=0.00;FS=8.783;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.009;QD=20.35;ReadPosRankSum=3.268;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2841,309,0 chrII 151407 . G T 2931 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.04;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2964,309,0 chrII 151574 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.81;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3809,408,0 chrII 151682 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.360;QD=22.14;ReadPosRankSum=1.710;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3431,381,0 chrII 151709 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.22;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3352,369,0 chrII 151724 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.44;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3181,342,0 chrII 151783 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.72;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3031,330,0 chrII 151910 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=26.42;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4043,421,0 chrII 151946 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=6.340;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.120;QD=25.79;ReadPosRankSum=2.417;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3946,418,0 chrII 151976 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.87;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3705,402,0 chrII 152073 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.52;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3506,363,0 chrII 152204 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=138;Dels=0.00;FS=3.411;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.630;QD=22.41;ReadPosRankSum=1.681;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3126,348,0 chrII 152451 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=6.525;HaplotypeScore=11.9772;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.225;QD=24.54;ReadPosRankSum=2.421;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4171,447,0 chrII 152612 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.0997;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.029;QD=22.58;ReadPosRankSum=1.713;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4019,418,0 chrII 152624 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.36;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3854,394,0 chrII 152750 . A C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.739;DP=136;Dels=0.00;FS=3.411;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.707;QD=22.68;ReadPosRankSum=-0.688;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3118,321,0 chrII 152894 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.29;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3570,378,0 chrII 152949 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=7.194;HaplotypeScore=9.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.866;QD=22.82;ReadPosRankSum=2.397;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3205,348,0 chrII 153007 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9156;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.91;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2998,318,0 chrII 153787 . T A 2459 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2492,270,0 chrII 154001 . A C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.17;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3545,387,0 chrII 154142 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.69;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3838,411,0 chrII 154160 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=3.021;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.774;QD=21.47;ReadPosRankSum=2.235;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3435,378,0 chrII 154235 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3238,336,0 chrII 154740 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=131;Dels=0.00;FS=5.992;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.839;QD=22.69;ReadPosRankSum=2.931;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3005,321,0 chrII 154799 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2972,318,0 chrII 155354 . A G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=136;Dels=0.00;FS=11.112;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.145;QD=20.81;ReadPosRankSum=3.781;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:5,131:136:99:2863,312,0 chrII 155527 . T A 2217 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.36;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2250,237,0 chrII 155591 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.51;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2361,255,0 chrII 155738 . A G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.684;QD=21.21;ReadPosRankSum=1.687;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1645,180,0 chrII 155739 . T G 1706 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.45;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1739,183,0 chrII 155783 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.65;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1936,210,0 chrII 155846 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.33;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1578,171,0 chrII 155859 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.63;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1785,186,0 chrII 155972 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.37;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2056,213,0 chrII 156194 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.74;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2968,309,0 chrII 156203 . C A 3005 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.66;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3038,321,0 chrII 156261 . T G 2537 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.86;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2570,270,0 chrII 158114 . A G 6967.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.1527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6967,751,0 chrII 158591 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.8311;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.81;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2700,285,0 chrII 158800 . G T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.75;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4088,435,0 chrII 158803 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=4.206;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-1.026;QD=20.02;ReadPosRankSum=1.652;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4344,462,0 chrII 158953 . G A 7628.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=17.1042;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.61;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,309:310:99:7628,811,0 chrII 159079 . C T 7457.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=24.1366;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.06;SB=-4.275e+03 GT:AD:DP:GQ:PL 1/1:0,335:338:99:7457,781,0 chrII 159139 . T G 7524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=348;Dels=0.00;FS=3.634;HaplotypeScore=20.4596;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.178;QD=21.62;ReadPosRankSum=1.722;SB=-3.771e+03 GT:AD:DP:GQ:PL 1/1:1,343:348:99:7524,823,0 chrII 159797 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3919,414,0 chrII 159857 . C G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.8158;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.56;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3438,369,0 chrII 159891 . A C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.547;HaplotypeScore=16.6931;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.598;QD=23.73;ReadPosRankSum=1.678;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3141,333,0 chrII 159926 . C A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.35;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3293,363,0 chrII 160143 . T G 3872.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.75;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3872,420,0 chrII 160403 . G T 6251.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.05;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6251,655,0 chrII 160810 . T G 6595.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=21.1624;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.06;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:0,280:286:99:6595,694,0 chrII 161065 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.91;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3462,384,0 chrII 161297 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.91;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2961,304,0 chrII 161484 . T G 1669 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7244;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.13;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1702,186,0 chrII 161512 . T C 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.276;QD=20.31;ReadPosRankSum=1.653;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1820,198,0 chrII 161687 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.12;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3657,393,0 chrII 161757 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0287;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.05;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2943,303,0 chrII 161840 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=2.346;QD=25.76;ReadPosRankSum=2.106;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3735,393,0 chrII 162251 . A G 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=260;Dels=0.00;FS=5.930;HaplotypeScore=17.1574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.988;QD=22.53;ReadPosRankSum=2.950;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:5859,654,0 chrII 162420 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=7.228;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.293;QD=23.90;ReadPosRankSum=2.387;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4733,505,0 chrII 162773 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.65;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1448,165,0 chrII 163080 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.90;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4762,487,0 chrII 163180 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4732,496,0 chrII 163349 . G T 5749.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.66;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5749,618,0 chrII 163497 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=3.791;HaplotypeScore=13.8027;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.753;QD=23.67;ReadPosRankSum=1.659;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5634,598,0 chrII 163787 . A C 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.090;QD=22.29;ReadPosRankSum=1.672;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5217,582,0 chrII 163854 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.26;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4651,496,0 chrII 163892 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.49;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3309,357,0 chrII 163967 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.638;QD=23.27;ReadPosRankSum=1.671;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2686,288,0 chrII 163989 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.13;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2667,291,0 chrII 164378 . T C 2209 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.27;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2242,237,0 chrII 164419 . T C 2258 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2291,255,0 chrII 164828 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.93;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3440,366,0 chrII 164914 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.55;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3141,333,0 chrII 164985 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.1476;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.73;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2568,267,0 chrII 164995 . T G 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5293;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.658;QD=13.34;ReadPosRankSum=1.212;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:1927,210,0 chrII 165048 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=8.2634;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.96;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2404,249,0 chrII 165107 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=5.819;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.382;QD=22.26;ReadPosRankSum=1.691;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3762,426,0 chrII 165259 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.22;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4239,448,0 chrII 165525 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.03;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:3911,426,0 chrII 165729 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.37;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2416,267,0 chrII 165877 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.6083;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.63;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1348,144,0 chrII 166019 . T C 1405 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.66;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1438,153,0 chrII 166227 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.50;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:852,93,0 chrII 166311 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.97;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1351,141,0 chrII 166544 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.91;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2132,225,0 chrII 166572 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.75;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2533,264,0 chrII 166654 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=156;Dels=0.00;FS=17.613;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.025;QD=21.91;ReadPosRankSum=3.793;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:5,150:156:99:3418,366,0 chrII 166703 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.23;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3998,421,0 chrII 166909 . C G 2302 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.74;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2335,255,0 chrII 167174 . A G 3069 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.98;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3102,339,0 chrII 167373 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.52;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2044,210,0 chrII 167426 . G A 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.279;QD=20.29;ReadPosRankSum=1.676;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1372,150,0 chrII 167527 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.08;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2041,225,0 chrII 167897 . A G 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=0.599;QD=22.72;ReadPosRankSum=1.700;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2487,273,0 chrII 167998 . G A 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=90;Dels=0.00;FS=4.109;HaplotypeScore=15.8915;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.569;QD=9.49;ReadPosRankSum=1.365;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:93:887,93,0 chrII 168036 . A C 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=121;Dels=0.00;FS=2.330;HaplotypeScore=8.5631;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.348;QD=18.94;ReadPosRankSum=1.839;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,116:121:99:2325,238,0 chrII 168065 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=153;Dels=0.00;FS=2.584;HaplotypeScore=7.3925;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.901;QD=23.71;ReadPosRankSum=2.954;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3627,381,0 chrII 168150 . C G 4484.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.50;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4484,504,0 chrII 168194 . G A 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8900;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.456;QD=24.20;ReadPosRankSum=0.091;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4646,484,0 chrII 168448 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6760;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.65;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3618,387,0 chrII 168467 . T G 2994 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.01;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3027,330,0 chrII 168536 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.26;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2702,297,0 chrII 168653 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.62;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3971,412,0 chrII 168711 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2696;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.76;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3961,423,0 chrII 168731 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.584;QD=21.15;ReadPosRankSum=2.415;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3037,330,0 chrII 168747 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=136;Dels=0.00;FS=3.712;HaplotypeScore=4.1351;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.155;QD=20.75;ReadPosRankSum=1.422;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2855,306,0 chrII 168775 . A T 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=11.700;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.059;QD=21.46;ReadPosRankSum=2.948;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2951,309,0 chrII 168802 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5693;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.516;QD=20.68;ReadPosRankSum=2.654;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3218,339,0 chrII 169483 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=24.66;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2894,312,0 chrII 169496 . G C 2738 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.02;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2771,300,0 chrII 169529 . T C 2564 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.96;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2597,276,0 chrII 169566 . G T 2036 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.62;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2069,216,0 chrII 169589 . A G 2460 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.78;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2493,258,0 chrII 169601 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.125;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.039;QD=20.52;ReadPosRankSum=1.672;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2393,252,0 chrII 169621 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.01;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2105,228,0 chrII 169820 . G T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7516;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=23.81;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4286,448,0 chrII 169875 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=3.014;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=0.622;QD=16.88;ReadPosRankSum=2.420;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2802,306,0 chrII 170167 . C G 1290 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=21.50;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1323,144,0 chrII 170206 . G T 595 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=21.25;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:628,66,0 chrII 170207 . C T 591 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=20.38;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:66:624,66,0 chrII 170208 . C T 596 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=20.55;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:629,66,0 chrII 170320 . A C 1634 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1667,180,0 chrII 170442 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=24.05;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2318,246,0 chrII 170790 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4135,453,0 chrII 171183 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.28;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3160,327,0 chrII 171230 . A T 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.665;QD=22.87;ReadPosRankSum=-1.530;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2389,246,0 chrII 171433 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2584,288,0 chrII 171570 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.402;QD=24.86;ReadPosRankSum=0.120;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4376,463,0 chrII 171612 . G C 5069.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:5069,544,0 chrII 172028 . G C 4378.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.57;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4378,477,0 chrII 172038 . T A 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.599;QD=20.66;ReadPosRankSum=1.666;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4359,480,0 chrII 172113 . T C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=8.527;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.108;QD=23.77;ReadPosRankSum=2.424;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,192:198:99:4707,496,0 chrII 172223 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=145;Dels=0.00;FS=2.423;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.851;QD=22.55;ReadPosRankSum=3.314;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:4,141:145:99:3270,348,0 chrII 172245 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.03;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2683,294,0 chrII 172262 . A G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=123;Dels=0.00;FS=2.426;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.640;QD=19.87;ReadPosRankSum=3.328;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:4,118:123:99:2477,261,0 chrII 172346 . A T 2361 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.12;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2394,252,0 chrII 172383 . C T 2019 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.62;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2052,213,0 chrII 172488 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=106;Dels=0.00;FS=3.877;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.511;QD=25.31;ReadPosRankSum=1.666;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2716,285,0 chrII 173028 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.8469;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.659;QD=20.83;ReadPosRankSum=1.659;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3978,426,0 chrII 173043 . A G 4130.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.7983;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.74;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4130,444,0 chrII 173254 . A T 4658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=215;Dels=0.00;FS=5.237;HaplotypeScore=15.6345;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.612;QD=21.67;ReadPosRankSum=2.294;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4658,513,0 chrII 173385 . G A 5004.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.9468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5004,546,0 chrII 173659 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.458;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.125;QD=23.53;ReadPosRankSum=1.709;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3600,384,0 chrII 174030 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.96;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4004,441,0 chrII 174060 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.350;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.552;QD=21.01;ReadPosRankSum=1.652;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3676,405,0 chrII 174535 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=23.19;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1842,195,0 chrII 174555 . A C 1337 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.10;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1370,156,0 chrII 174597 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.78;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1342,144,0 chrII 174599 . G C 1261 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.02;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1294,138,0 chrII 174685 . A G 539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=10.7082;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=-0.578;QD=13.82;ReadPosRankSum=1.628;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,32:39:63:572,63,0 chrII 174688 . C T 495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=17.4334;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;MQRankSum=-1.733;QD=13.38;ReadPosRankSum=-0.234;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:37:528,37,0 chrII 174715 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.990;DP=29;Dels=0.00;FS=10.965;HaplotypeScore=24.7389;MLEAC=2;MLEAF=1.00;MQ=37.35;MQ0=0;MQRankSum=0.109;QD=0.42;ReadPosRankSum=1.680;SB=-1.318e+02 GT:AD:DP:GQ:PL 1/1:14,15:29:6:43,6,0 chrII 174758 . A G 332 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=14.43;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:39:365,39,0 chrII 174853 . C T 609 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=9.37;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:69:642,69,0 chrII 174871 . A T 600 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=65.6461;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=7.89;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:69:633,69,0 chrII 175054 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=0.236;QD=25.17;ReadPosRankSum=1.706;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3373,360,0 chrII 175109 . T A 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.093;QD=23.86;ReadPosRankSum=1.679;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3135,336,0 chrII 175409 . A G 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.7878;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.012;QD=22.28;ReadPosRankSum=0.997;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5147,547,0 chrII 175439 . G A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.3752;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.78;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4655,510,0 chrII 175505 . C A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.88;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5491,568,0 chrII 175526 . A G 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.667;QD=23.32;ReadPosRankSum=1.700;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5107,549,0 chrII 175784 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=183;Dels=0.00;FS=6.593;HaplotypeScore=13.6245;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.441;QD=21.96;ReadPosRankSum=2.395;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4019,432,0 chrII 175964 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.35;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3690,390,0 chrII 176009 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.361;QD=23.04;ReadPosRankSum=2.397;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3258,357,0 chrII 176084 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=151;Dels=0.00;FS=2.955;HaplotypeScore=16.3208;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.806;QD=23.15;ReadPosRankSum=2.417;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3495,372,0 chrII 176261 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3767,408,0 chrII 177622 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2290,237,0 chrII 177793 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2084,219,0 chrII 178351 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.51;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4279,439,0 chrII 179248 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.05;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3330,363,0 chrII 179257 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.82;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3156,327,0 chrII 179290 . C G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0827;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.93;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3262,357,0 chrII 179410 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.55;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2920,312,0 chrII 179872 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3336,351,0 chrII 180070 . T G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=112;Dels=0.00;FS=7.628;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.638;QD=22.99;ReadPosRankSum=2.405;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2608,276,0 chrII 180255 . G T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.0832;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.08;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3561,375,0 chrII 180379 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.950;QD=18.30;ReadPosRankSum=1.714;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3568,393,0 chrII 180607 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.78;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4186,450,0 chrII 181033 . T C 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.124;QD=19.57;ReadPosRankSum=1.703;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4638,496,0 chrII 181034 . G T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.61;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4687,496,0 chrII 181279 . C T 5902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.2982;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.325;QD=23.89;ReadPosRankSum=-1.227;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5902,610,0 chrII 181425 . A C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.38;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3905,420,0 chrII 181635 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.76;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4586,484,0 chrII 181647 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=201;Dels=0.00;FS=2.579;HaplotypeScore=14.9902;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.660;QD=21.58;ReadPosRankSum=2.934;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:3,195:201:99:4338,474,0 chrII 182128 . T C 5901.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.78;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5901,628,0 chrII 182137 . G T 5824.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.84;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5824,607,0 chrII 182323 . C G 5196.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.72;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5196,550,0 chrII 182436 . T C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=21.1280;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.28;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3864,423,0 chrII 182758 . A G 5290.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.56;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5290,559,0 chrII 182892 . G A 5438.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.49;SB=-3.441e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5438,571,0 chrII 182901 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.29;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:4810,522,0 chrII 183084 . A C 5356.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.50;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5356,574,0 chrII 183117 . T C 4570.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.68;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4570,484,0 chrII 183198 . T C 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=4.946;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.811;QD=24.51;ReadPosRankSum=1.715;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:5024,538,0 chrII 183456 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.456;QD=22.22;ReadPosRankSum=1.702;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2611,279,0 chrII 183459 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.37;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2673,279,0 chrII 183619 . T C 3132 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0874;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.03;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3165,342,0 chrII 183810 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.23;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3216,339,0 chrII 183889 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.27;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1895,198,0 chrII 184146 . T C 2643 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.59;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2676,288,0 chrII 184236 . G C 2227 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.43;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2260,240,0 chrII 184249 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.142;QD=20.03;ReadPosRankSum=2.317;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2256,240,0 chrII 184343 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=3.003;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.255;QD=23.17;ReadPosRankSum=2.259;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2419,258,0 chrII 184372 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.54;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2287,240,0 chrII 184388 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.73;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2283,234,0 chrII 184606 . C A 3200 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.60;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3233,339,0 chrII 184932 . A C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=153;Dels=0.00;FS=2.871;HaplotypeScore=8.8155;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.897;QD=23.44;ReadPosRankSum=2.417;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3587,378,0 chrII 184941 . T A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.06;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3465,361,0 chrII 185376 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8702;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.43;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3034,312,0 chrII 185442 . C G 2485 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0199;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.22;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2518,267,0 chrII 185478 . C G 2090 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9711;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.00;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2123,228,0 chrII 185492 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2384;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.23;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2212,234,0 chrII 185526 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.964;QD=21.95;ReadPosRankSum=2.380;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2382,255,0 chrII 185579 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.74;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2762,294,0 chrII 185762 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=94;Dels=0.00;FS=5.631;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.902;QD=22.77;ReadPosRankSum=2.925;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:3,90:94:99:2173,237,0 chrII 185891 . T A 2077 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.08;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2110,222,0 chrII 185922 . A G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.155;QD=22.88;ReadPosRankSum=1.694;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2092,222,0 chrII 185954 . A G 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.447;QD=21.26;ReadPosRankSum=1.691;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1840,204,0 chrII 185979 . T A 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.837;DP=89;Dels=0.00;FS=11.049;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.417;QD=18.34;ReadPosRankSum=4.066;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:6,83:89:99:1665,180,0 chrII 186008 . T G 2699 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.10;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2732,294,0 chrII 186049 . T A 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.938;QD=25.61;ReadPosRankSum=2.400;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3790,399,0 chrII 186067 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.22;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3692,405,0 chrII 186185 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=25.17;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4959,523,0 chrII 186210 . G C 5369.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=23.45;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5369,574,0 chrII 186253 . A G 5813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=263;Dels=0.00;FS=2.999;HaplotypeScore=15.7452;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.249;QD=22.10;ReadPosRankSum=2.421;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:2,259:263:99:5813,636,0 chrII 186366 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.406;QD=21.25;ReadPosRankSum=1.696;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4058,429,0 chrII 186379 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=185;Dels=0.00;FS=16.280;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.096;QD=20.12;ReadPosRankSum=3.374;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3723,379,0 chrII 186397 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=8.793;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.642;QD=21.85;ReadPosRankSum=2.408;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3890,414,0 chrII 186424 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.19;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3756,411,0 chrII 186525 . A G 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.522;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.981;QD=25.03;ReadPosRankSum=1.714;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4756,513,0 chrII 186623 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.44;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2793,288,0 chrII 186648 . C G 2941 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8028;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.47;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2974,330,0 chrII 186709 . A T 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.01;FS=2.913;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.394;QD=23.19;ReadPosRankSum=2.403;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3711,385,0 chrII 186753 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.5466;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.83;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3457,369,0 chrII 186759 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.5466;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.46;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3244,339,0 chrII 186778 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.36;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3420,360,0 chrII 186915 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.682;QD=23.54;ReadPosRankSum=1.627;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3884,414,0 chrII 187153 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.28;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3679,382,0 chrII 187157 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.68;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3515,369,0 chrII 187788 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.44;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3422,354,0 chrII 187873 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.300;QD=23.16;ReadPosRankSum=1.666;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2442,264,0 chrII 188701 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.08;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4306,462,0 chrII 188734 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.46;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4098,438,0 chrII 188743 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.03;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4206,442,0 chrII 189163 . A C 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.921;QD=23.17;ReadPosRankSum=1.716;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,221:226:99:5236,585,0 chrII 189263 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4433,471,0 chrII 189666 . A C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.766;QD=22.12;ReadPosRankSum=1.586;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4202,462,0 chrII 189739 . G C 4149.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.4706;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.95;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,193:198:99:4149,459,0 chrII 190246 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5672;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.35;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3801,397,0 chrII 190255 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.2960;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.41;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3612,396,0 chrII 190308 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=3.065;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.667;QD=20.53;ReadPosRankSum=1.689;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3305,354,0 chrII 190351 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.66;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2760,288,0 chrII 190355 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=22.36;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2918,300,0 chrII 190452 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1059;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.340;QD=23.22;ReadPosRankSum=1.691;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3948,423,0 chrII 190737 . A T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3488,366,0 chrII 190816 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.15;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4226,453,0 chrII 190944 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=23.07;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3483,384,0 chrII 190980 . G C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=24.45;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3667,396,0 chrII 191066 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9650;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=20.94;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2148,228,0 chrII 191084 . T A 1227 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=20.11;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1260,135,0 chrII 191087 . A G 988 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=17.96;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1021,111,0 chrII 191088 . A G 1002 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=18.91;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1035,111,0 chrII 191090 . T G 921 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=23.611;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=-2.170;QD=17.38;ReadPosRankSum=2.357;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:2,51:53:99:954,108,0 chrII 191091 . G C 917 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=11.383;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;MQRankSum=1.354;QD=16.37;ReadPosRankSum=1.480;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:1,54:56:99:950,108,0 chrII 191207 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=118;Dels=0.00;FS=9.601;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;MQRankSum=0.872;QD=18.16;ReadPosRankSum=2.582;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2176,237,0 chrII 191214 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=17.36;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2116,225,0 chrII 191222 . C T 1786 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=14.88;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1819,198,0 chrII 191226 . C T 1613 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=14.66;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1646,177,0 chrII 191228 . C T 1637 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=14.88;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1670,180,0 chrII 191242 . C A 1161 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=11.73;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1194,126,0 chrII 191281 . A G 961 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=10.33;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:994,108,0 chrII 191288 . T C 830 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=9.88;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:863,93,0 chrII 191289 . A G 802 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=9.55;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:835,93,0 chrII 191294 . C T 781 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=9.19;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:87:814,87,0 chrII 191298 . T A 718 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;MQRankSum=-1.732;QD=8.65;ReadPosRankSum=1.690;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:84:751,84,0 chrII 191304 . C A 679 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=9.56;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:72:712,72,0 chrII 191311 . A C 723 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=9.51;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:81:756,81,0 chrII 191363 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=16.71;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1353,141,0 chrII 191377 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=16.06;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1543,171,0 chrII 191422 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=17.20;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2200,234,0 chrII 191424 . T C 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.468;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;MQRankSum=-1.328;QD=16.98;ReadPosRankSum=1.703;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2087,231,0 chrII 191470 . A T 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;MQRankSum=0.303;QD=20.02;ReadPosRankSum=1.635;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2896,303,0 chrII 191521 . G C 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=22.58;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2472,273,0 chrII 191528 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=23.65;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2469,255,0 chrII 191599 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=24.87;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2644,273,0 chrII 191751 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.01;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2869,297,0 chrII 192038 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=24.30;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3450,360,0 chrII 192085 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.618;QD=22.81;ReadPosRankSum=1.702;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2656,282,0 chrII 192122 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.48;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1845,192,0 chrII 192148 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.118;QD=22.47;ReadPosRankSum=1.665;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2347,249,0 chrII 192289 . G C 1235 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.15;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1268,141,0 chrII 192390 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.55;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2971,312,0 chrII 192591 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3476,360,0 chrII 193359 . A G 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.041;DP=259;Dels=0.00;FS=14.338;HaplotypeScore=26.7274;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.802;QD=19.38;ReadPosRankSum=4.164;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:6,249:259:99:5020,555,0 chrII 193380 . A G 5088.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.35;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5088,541,0 chrII 193398 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-1.397;QD=18.41;ReadPosRankSum=0.699;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:4419,460,0 chrII 193450 . T C 4822.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.87;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4822,522,0 chrII 193664 . T C 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.01;FS=0.000;HaplotypeScore=9.7059;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.101;QD=23.85;ReadPosRankSum=1.698;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4985,552,0 chrII 193867 . C T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.5780;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.47;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4830,502,0 chrII 194057 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=4.305;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.554;QD=23.15;ReadPosRankSum=1.679;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4514,492,0 chrII 194226 . C T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.9869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.02;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4278,448,0 chrII 195009 . C T 6499.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.98;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6499,670,0 chrII 195168 . A G 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.787;QD=22.24;ReadPosRankSum=1.702;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5138,541,0 chrII 195177 . T A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.27;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4864,528,0 chrII 195180 . C G 4790.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.71;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:4790,516,0 chrII 195719 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.58;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4292,451,0 chrII 195960 . A T 2354 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.02;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2387,255,0 chrII 196145 . C A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.12;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3407,360,0 chrII 196155 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.64;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3376,360,0 chrII 196206 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.08;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3776,399,0 chrII 196417 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=6.205;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.052;QD=23.47;ReadPosRankSum=2.420;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3919,414,0 chrII 196581 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.51;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3489,384,0 chrII 196633 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4201,442,0 chrII 196681 . A G 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.025;QD=22.69;ReadPosRankSum=1.697;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4448,472,0 chrII 196964 . A T 2080 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=16.0578;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.78;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2113,222,0 chrII 197035 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=112;Dels=0.00;FS=2.598;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.072;QD=21.09;ReadPosRankSum=2.901;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2395,252,0 chrII 197372 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1713;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=26.00;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4056,429,0 chrII 197440 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=24.12;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2734,279,0 chrII 197464 . T C 2153 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=21.11;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2186,231,0 chrII 197474 . G C 2365 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=22.52;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2398,255,0 chrII 197588 . C G 1414 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=1;QD=22.44;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1447,156,0 chrII 197703 . T A 593 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.080;DP=34;Dels=0.00;FS=33.797;HaplotypeScore=17.2419;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=2;MQRankSum=-2.934;QD=17.44;ReadPosRankSum=-0.256;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:5,29:34:66:626,66,0 chrII 197712 . A C 154.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=16;Dels=0.00;FS=20.212;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=1;MQRankSum=-0.085;QD=9.65;ReadPosRankSum=2.123;SB=-4.468e+00 GT:AD:DP:GQ:PL 0/1:3,13:16:1:183,0,1 chrII 197713 . G T 168.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=15;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=1;MQRankSum=1.488;QD=11.23;ReadPosRankSum=1.488;SB=-1.464e+00 GT:AD:DP:GQ:PL 1/1:1,13:15:7:200,7,0 chrII 197715 . G T 213.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=15;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=1;MQRankSum=1.488;QD=14.23;ReadPosRankSum=1.488;SB=-1.464e+00 GT:AD:DP:GQ:PL 1/1:2,13:15:7:245,7,0 chrII 197761 . G A 199.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=2;QD=11.06;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:24:232,24,0 chrII 197836 . C G 193.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.122;DP=49;Dels=0.00;FS=10.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=33;MQRankSum=2.850;QD=3.94;ReadPosRankSum=0.788;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:29,20:49:24:226,24,0 chrII 197842 . T G 176.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.887;DP=55;Dels=0.00;FS=9.874;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.59;MQ0=38;MQRankSum=2.887;QD=3.20;ReadPosRankSum=1.642;SB=-1.499e+02 GT:AD:DP:GQ:PL 1/1:33,22:55:24:209,24,0 chrII 197880 . C T 144.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=43;Dels=0.00;FS=3.424;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=32;MQRankSum=1.423;QD=3.35;ReadPosRankSum=0.791;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:26,17:43:18:177,18,0 chrII 197966 . A C 292 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.022;DP=49;Dels=0.00;FS=58.182;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=8;MQRankSum=3.558;QD=5.96;ReadPosRankSum=-3.517;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:9,39:49:36:325,36,0 chrII 198029 . A G 1542 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=5;QD=19.77;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1575,165,0 chrII 198085 . G C 1763 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.28;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1796,195,0 chrII 198086 . T C 1752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-0.933;QD=16.69;ReadPosRankSum=2.818;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1785,198,0 chrII 198093 . A G 1700 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=16.83;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1733,189,0 chrII 198095 . A G 1701 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=17.18;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1734,189,0 chrII 198168 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.48;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2204,240,0 chrII 198180 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.18;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2606,270,0 chrII 198368 . A C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.6401;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.072;QD=22.09;ReadPosRankSum=0.973;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2352,252,0 chrII 198512 . A G 2022 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.66;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2055,219,0 chrII 198526 . A G 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=3.018;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.450;QD=23.88;ReadPosRankSum=2.350;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1824,198,0 chrII 198605 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.84;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2565,261,0 chrII 198672 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.26;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2119,222,0 chrII 198751 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.416;QD=23.29;ReadPosRankSum=2.339;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3131,336,0 chrII 198778 . T G 2923 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.48;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2956,309,0 chrII 198782 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.15;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2912,300,0 chrII 198826 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.069;QD=18.50;ReadPosRankSum=1.697;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1883,210,0 chrII 199139 . T C 3193 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.34;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3226,348,0 chrII 199390 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=119;Dels=0.00;FS=6.017;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.371;QD=15.97;ReadPosRankSum=2.888;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:3,114:119:99:1934,207,0 chrII 199391 . A C 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=119;Dels=0.00;FS=6.599;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.936;QD=15.26;ReadPosRankSum=2.303;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:1849,204,0 chrII 199514 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1223;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.91;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2830,294,0 chrII 199762 . A C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=105;Dels=0.00;FS=3.038;HaplotypeScore=13.5994;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.905;QD=20.02;ReadPosRankSum=2.353;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,100:105:99:2135,228,0 chrII 199961 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.010;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.325;QD=24.53;ReadPosRankSum=1.705;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3197,342,0 chrII 200008 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=1;QD=23.65;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3666,385,0 chrII 200483 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7779;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.02;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3775,411,0 chrII 200522 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.458;QD=21.83;ReadPosRankSum=1.672;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3798,417,0 chrII 200530 . G T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.95;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4040,421,0 chrII 200968 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3183,328,0 chrII 201049 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.236;QD=22.26;ReadPosRankSum=2.385;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3406,363,0 chrII 201063 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.64;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3635,387,0 chrII 201476 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.0362;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.99;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5301,559,0 chrII 201611 . T C 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=3.200;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.340;QD=22.78;ReadPosRankSum=1.688;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5354,579,0 chrII 201647 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.99;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4483,478,0 chrII 201782 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2386;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.76;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4415,477,0 chrII 201831 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.12;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3953,426,0 chrII 201879 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.64;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4103,427,0 chrII 202001 . G C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.7882;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.79;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3917,426,0 chrII 202108 . A T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.27;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4976,520,0 chrII 202227 . T A 4976.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.1092;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.58;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4976,529,0 chrII 202411 . G A 6778.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.4386;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.87;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6778,697,0 chrII 202509 . T C 7139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=315;Dels=0.00;FS=8.998;HaplotypeScore=19.5437;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.334;QD=22.66;ReadPosRankSum=3.384;SB=-4.157e+03 GT:AD:DP:GQ:PL 1/1:4,311:315:99:7139,754,0 chrII 202580 . C G 6003.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=15.8896;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.99;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:6003,643,0 chrII 202724 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7423;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.492;QD=20.39;ReadPosRankSum=0.246;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3977,432,0 chrII 202801 . A G 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=195;Dels=0.00;FS=9.373;HaplotypeScore=22.4505;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-2.290;QD=19.98;ReadPosRankSum=2.881;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:3897,432,0 chrII 202898 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4484,477,0 chrII 202992 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=18.8960;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.127;QD=23.06;ReadPosRankSum=1.695;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4427,474,0 chrII 203114 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=20.4647;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3624,379,0 chrII 203566 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=24.75;ReadPosRankSum=1.705;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3250,345,0 chrII 203910 . C G 2756 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=24.3397;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=13.00;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:2789,321,0 chrII 204179 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.71;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3742,411,0 chrII 204182 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.21;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3785,399,0 chrII 204215 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.0707;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.888;QD=17.74;ReadPosRankSum=1.697;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3494,375,0 chrII 204404 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.6364;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.52;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5066,535,0 chrII 204458 . C T 5807.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.71;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5807,607,0 chrII 204536 . A G 5259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=229;Dels=0.00;FS=5.867;HaplotypeScore=16.7224;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.341;QD=22.97;ReadPosRankSum=2.969;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:5259,559,0 chrII 204923 . A T 2890 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.08;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2923,306,0 chrII 204924 . T C 2820 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.70;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2853,306,0 chrII 204932 . G A 2734 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=24.41;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2767,285,0 chrII 204995 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.76;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2979,309,0 chrII 205151 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.18;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3005,312,0 chrII 205157 . C A 2971 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.53;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3004,312,0 chrII 205343 . A C 4071.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.13;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4071,438,0 chrII 205834 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.3407;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=3;QD=19.38;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2862,297,0 chrII 205891 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=5.166;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.768;QD=22.14;ReadPosRankSum=1.702;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2601,291,0 chrII 206076 . C G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.75;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3515,381,0 chrII 206280 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.092;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.182;QD=21.70;ReadPosRankSum=1.716;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4644,501,0 chrII 206284 . C G 4446.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.30;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4446,486,0 chrII 206369 . T C 5232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=3.922;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.137;QD=23.05;ReadPosRankSum=1.686;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5232,570,0 chrII 206713 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3867,417,0 chrII 207008 . T C 2029 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.34;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2062,228,0 chrII 207171 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.66;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3738,402,0 chrII 207192 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=7.888;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.394;QD=21.71;ReadPosRankSum=2.401;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3344,354,0 chrII 207220 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.23;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2886,303,0 chrII 207561 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.607;QD=23.67;ReadPosRankSum=1.707;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3338,360,0 chrII 207923 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.95;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4391,457,0 chrII 208189 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.40;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4026,418,0 chrII 208213 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.96;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3905,406,0 chrII 208351 . T A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.06;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4082,444,0 chrII 208417 . G A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.74;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4799,516,0 chrII 208471 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.92;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3506,390,0 chrII 208543 . A G 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.234;QD=25.43;ReadPosRankSum=1.713;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4730,496,0 chrII 208574 . A G 5074.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.63;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5074,535,0 chrII 208735 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.01;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3842,414,0 chrII 208870 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.98;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3341,357,0 chrII 208879 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.73;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3434,363,0 chrII 208915 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.18;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2833,303,0 chrII 208916 . C G 2855 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.54;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2888,312,0 chrII 208963 . C A 2809 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.37;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2842,294,0 chrII 209245 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.50;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2531,276,0 chrII 209373 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9798;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.52;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3074,336,0 chrII 209754 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.01;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4538,498,0 chrII 210006 . T C 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=220;Dels=0.00;FS=14.933;HaplotypeScore=20.7197;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.519;QD=21.65;ReadPosRankSum=3.373;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:4,216:220:99:4764,525,0 chrII 210102 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.929;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.991;QD=21.10;ReadPosRankSum=-0.270;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3651,396,0 chrII 210387 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3437,363,0 chrII 210582 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.40;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3300,366,0 chrII 210974 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.50;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3193,342,0 chrII 210990 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.34;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3166,339,0 chrII 211332 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.60;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5027,520,0 chrII 211581 . C T 6041.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.5330;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.60;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6041,643,0 chrII 212351 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.49;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:996,105,0 chrII 212495 . G T 251 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.21;SB=-1.119e+02 GT:AD:DP:GQ:PL 1/1:0,18:19:30:284,30,0 chrII 212638 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.474;QD=24.50;ReadPosRankSum=2.369;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,120:122:99:3022,327,0 chrII 212810 . T C 5545.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.70;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5545,589,0 chrII 212882 . A G 5846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.954;QD=20.37;ReadPosRankSum=1.708;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,285:287:99:5846,625,0 chrII 212886 . C G 5723.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=4.6518;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.15;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:5723,619,0 chrII 213058 . C T 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=201;Dels=0.00;FS=3.372;HaplotypeScore=22.4303;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.542;QD=23.17;ReadPosRankSum=0.883;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4657,487,0 chrII 213466 . A G 6063.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.85;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6063,646,0 chrII 213545 . G C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.2013;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.37;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4580,501,0 chrII 213628 . T A 5293.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.95;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5293,556,0 chrII 213728 . T G 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=220;Dels=0.00;FS=3.392;HaplotypeScore=18.6548;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.308;QD=23.37;ReadPosRankSum=1.716;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:1,213:220:99:5141,544,0 chrII 214190 . G C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3275,366,0 chrII 214439 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.63;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3960,409,0 chrII 214711 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2974,312,0 chrII 214801 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.41;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3269,334,0 chrII 214810 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.86;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3317,345,0 chrII 214891 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.08;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2710,294,0 chrII 215181 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0667;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.27;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4077,424,0 chrII 215946 . G C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=16.60;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,205:211:99:3503,384,0 chrII 215962 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.4790;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=15.36;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:3564,390,0 chrII 216520 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.33;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4735,505,0 chrII 216541 . A C 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.547;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.234;QD=20.86;ReadPosRankSum=1.716;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,214:219:99:4569,504,0 chrII 216631 . A G 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.3081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.366;QD=22.06;ReadPosRankSum=1.716;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4721,499,0 chrII 216794 . T C 6881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=287;Dels=0.00;FS=7.473;HaplotypeScore=26.9648;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.848;QD=23.98;ReadPosRankSum=3.802;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:5,280:287:99:6881,745,0 chrII 217015 . G C 8685.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=17.5516;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.73;SB=-4.668e+03 GT:AD:DP:GQ:PL 1/1:0,362:366:99:8685,928,0 chrII 217070 . C T 6657.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.28;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6657,685,0 chrII 217109 . T C 6391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=281;Dels=0.00;FS=8.350;HaplotypeScore=17.6657;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.040;QD=22.74;ReadPosRankSum=2.282;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:2,277:281:99:6391,673,0 chrII 217360 . T A 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=169;Dels=0.00;FS=15.035;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.253;QD=23.05;ReadPosRankSum=3.366;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3896,409,0 chrII 217636 . A G 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=192;Dels=0.00;FS=3.465;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.351;QD=24.38;ReadPosRankSum=1.678;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4680,510,0 chrII 217676 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4066,432,0 chrII 218039 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.97;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2405,258,0 chrII 218507 . T C 2894 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2927,321,0 chrII 218630 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3865,406,0 chrII 218666 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3931,417,0 chrII 219410 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.65;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3071,315,0 chrII 219506 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.511;QD=23.97;ReadPosRankSum=1.704;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2957,312,0 chrII 220055 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.60;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3182,333,0 chrII 220122 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.24;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2705,303,0 chrII 220136 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.04;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3031,312,0 chrII 220216 . A G 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.00;FS=3.153;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.304;QD=25.17;ReadPosRankSum=1.676;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4732,499,0 chrII 220331 . C T 5105.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.7071;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.02;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5105,547,0 chrII 220403 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=190;Dels=0.01;FS=12.655;HaplotypeScore=2.6921;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.236;QD=19.91;ReadPosRankSum=3.414;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:3782,402,0 chrII 220405 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.151;HaplotypeScore=4.5800;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.184;QD=20.45;ReadPosRankSum=1.677;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3865,408,0 chrII 220424 . A C 3209 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.23;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3242,360,0 chrII 220451 . T G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.142;HaplotypeScore=9.6840;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.653;QD=18.05;ReadPosRankSum=1.649;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3102,339,0 chrII 220776 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4948;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.58;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1844,192,0 chrII 220790 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=19.71;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1807,192,0 chrII 220911 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=1;QD=22.87;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2206,225,0 chrII 220914 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=21.58;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2018,219,0 chrII 225536 . A G 153.06 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=9.52;MQ0=59;QD=1.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:21:186,21,0 chrII 226856 . C T 102.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.23;MQ0=44;QD=1.50;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:43,24:68:15:135,15,0 chrII 226860 . A G 104.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.46;MQ0=40;QD=1.77;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:40,19:59:15:137,15,0 chrII 226862 . G T 115.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=37;QD=2.06;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:37,19:56:15:148,15,0 chrII 226864 . G T 106.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=37;QD=1.90;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:37,19:56:15:139,15,0 chrII 226865 . A G 107.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=37;QD=1.92;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:37,19:56:15:140,15,0 chrII 226877 . A T 126.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=34;QD=2.25;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:34,22:56:18:159,18,0 chrII 226878 . T A 124.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=34;QD=2.22;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:34,22:56:18:157,18,0 chrII 226887 . C T 137.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=30;QD=2.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:30,20:50:18:170,18,0 chrII 226900 . C T 136.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=26;QD=2.96;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:26,20:46:18:169,18,0 chrII 226903 . T C 141.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=25;QD=3.14;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:23,20:45:18:174,18,0 chrII 226906 . T A 137.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=23;QD=3.19;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:23,20:43:18:170,18,0 chrII 226912 . A G 136.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=19;QD=3.49;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:19,20:39:18:169,18,0 chrII 226931 . C G 103.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=11;QD=3.97;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:10,15:26:15:136,15,0 chrII 226932 . T A 120.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=9;QD=5.01;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:9,15:24:15:153,15,0 chrII 226936 . C A 110.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=5;QD=5.51;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:5,15:20:15:143,15,0 chrII 226965 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=1.20;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:9:80,9,0 chrII 226979 . T C 402 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=7.31;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:48:435,48,0 chrII 227201 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=17.6676;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.68;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2921,309,0 chrII 227302 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.119;QD=22.85;ReadPosRankSum=1.679;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3004,324,0 chrII 227328 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.17;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2373,261,0 chrII 227387 . A T 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=2.922;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.503;QD=23.07;ReadPosRankSum=2.355;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2432,258,0 chrII 227881 . T C 2362 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.28;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2395,255,0 chrII 228106 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.753;QD=24.37;ReadPosRankSum=1.619;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2275,243,0 chrII 228251 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.950;HaplotypeScore=7.5032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.622;QD=22.67;ReadPosRankSum=2.406;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2595,276,0 chrII 228551 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.72;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2618,270,0 chrII 228581 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=2.597;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.796;QD=21.67;ReadPosRankSum=2.367;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2633,282,0 chrII 228645 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.97;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2310,240,0 chrII 229777 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3590,387,0 chrII 230037 . A T 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.999;QD=21.30;ReadPosRankSum=1.631;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2951,312,0 chrII 230255 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2766,291,0 chrII 230576 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=4.740;HaplotypeScore=8.1404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=22.91;ReadPosRankSum=1.707;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3263,366,0 chrII 230849 . A G 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=183;Dels=0.00;FS=6.341;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.716;QD=24.15;ReadPosRankSum=2.354;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,178:183:99:4420,474,0 chrII 231614 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=113;Dels=0.00;FS=8.585;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.131;QD=25.40;ReadPosRankSum=2.274;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2903,303,0 chrII 231704 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=146;Dels=0.00;FS=9.676;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.510;QD=24.25;ReadPosRankSum=2.952;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3541,378,0 chrII 231837 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=3.039;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.235;QD=24.30;ReadPosRankSum=2.415;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3450,363,0 chrII 232618 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.16;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3077,330,0 chrII 233405 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3181,333,0 chrII 234340 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.02;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5380,580,0 chrII 234385 . G A 5360.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.30;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5360,568,0 chrII 234604 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=3.010;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.199;QD=23.40;ReadPosRankSum=2.376;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3931,426,0 chrII 234613 . T A 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.044;QD=24.35;ReadPosRankSum=1.644;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3847,403,0 chrII 234673 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8583;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.11;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3031,324,0 chrII 234856 . C G 2922 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.97;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2955,315,0 chrII 235113 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1769,183,0 chrII 235634 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.501;QD=25.14;ReadPosRankSum=1.646;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3100,330,0 chrII 235845 . A G 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=134;Dels=0.00;FS=8.303;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-3.157;QD=0.58;ReadPosRankSum=3.301;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:12:110,12,0 chrII 236156 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.34;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3148,324,0 chrII 236256 . T A 2294 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2327,246,0 chrII 236313 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.33;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1456,156,0 chrII 236383 . G A 305 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=13.26;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:338,36,0 chrII 236390 . G A 361 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=17.19;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:42:394,42,0 chrII 236391 . G A 369 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=16.77;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:42:402,42,0 chrII 236433 . C G 14.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=100.1612;MLEAC=1;MLEAF=0.500;MQ=48.12;MQ0=0;MQRankSum=1.700;QD=0.25;ReadPosRankSum=-2.362;SB=-1.207e+01 GT:AD:DP:GQ:PL 0/1:54,2:58:15:44,0,15 chrII 236441 . T A 1081 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.02;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1114,117,0 chrII 236489 . C A 2179 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=25.05;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2212,234,0 chrII 236626 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.254;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.472;QD=23.82;ReadPosRankSum=1.669;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2677,282,0 chrII 237151 . A G 2135 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2168,246,0 chrII 237541 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2995,312,0 chrII 237656 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.16;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1604,171,0 chrII 237660 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.91;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1546,165,0 chrII 237729 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.06;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1754,189,0 chrII 237971 . A T 1949 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.99;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1982,210,0 chrII 238080 . G C 1201 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1234,141,0 chrII 238111 . A G 1304 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.830;QD=21.38;ReadPosRankSum=2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1337,141,0 chrII 238137 . T C 1220 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1253,135,0 chrII 238163 . A T 758 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:84:791,84,0 chrII 238186 . G A 342 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=15.55;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:375,39,0 chrII 238189 . C T 284 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=20.29;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:317,36,0 chrII 238224 . T A 76.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:109,12,0 chrII 238287 . A C 217.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.50;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,12:14:27:250,27,0 chrII 238291 . T C 217.01 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=11.42;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:250,27,0 chrII 238346 . T G 1303 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.8111;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.337;QD=23.69;ReadPosRankSum=2.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1336,141,0 chrII 238452 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.34;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1619,174,0 chrII 238453 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.48;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1689,177,0 chrII 238608 . A C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.619;QD=21.78;ReadPosRankSum=1.683;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3104,330,0 chrII 238611 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.66;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2987,330,0 chrII 238675 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.57;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3582,378,0 chrII 238737 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.86;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3455,372,0 chrII 238944 . T A 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.191;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.131;QD=24.04;ReadPosRankSum=1.697;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2389,249,0 chrII 239434 . T A 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.947;QD=24.17;ReadPosRankSum=1.713;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4374,477,0 chrII 239528 . A C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=7.064;HaplotypeScore=8.9736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.682;QD=23.10;ReadPosRankSum=2.420;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3812,414,0 chrII 239597 . C T 5081.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.03;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5081,526,0 chrII 239625 . T C 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.6028;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.747;QD=21.79;ReadPosRankSum=2.851;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4838,520,0 chrII 239760 . C G 4550.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.7670;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.98;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4550,495,0 chrII 239864 . G A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.42;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4052,424,0 chrII 239951 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.799;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.108;QD=24.90;ReadPosRankSum=2.385;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3785,397,0 chrII 240048 . C A 2920 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.75;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2953,306,0 chrII 240542 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.67;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2673,288,0 chrII 240840 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.75;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3396,349,0 chrII 240963 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.19;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2840,309,0 chrII 241143 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.36;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2566,270,0 chrII 241196 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1395,159,0 chrII 241422 . T C 904 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:937,102,0 chrII 241482 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1135,117,0 chrII 242012 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=124;Dels=0.00;FS=3.585;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.217;QD=24.40;ReadPosRankSum=1.675;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:3059,321,0 chrII 242038 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=139;Dels=0.00;FS=2.911;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.632;QD=20.58;ReadPosRankSum=2.361;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2893,303,0 chrII 242053 . C G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.31;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3290,354,0 chrII 242434 . G A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.5081;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.43;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5927,625,0 chrII 242746 . C G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3346,360,0 chrII 243436 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.48;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4773,522,0 chrII 243486 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.05;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4617,481,0 chrII 243609 . T C 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=212;Dels=0.00;FS=4.517;HaplotypeScore=10.9120;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.448;QD=23.50;ReadPosRankSum=1.921;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:4981,532,0 chrII 243768 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.77;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4064,432,0 chrII 243846 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.0606;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.16;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3347,351,0 chrII 244011 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.68;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3908,426,0 chrII 244215 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.99;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1704,180,0 chrII 244779 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.71;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1963,210,0 chrII 245034 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.36;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3127,324,0 chrII 245073 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.592;QD=22.23;ReadPosRankSum=1.676;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2812,300,0 chrII 245305 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2000,213,0 chrII 245747 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.856;QD=17.32;ReadPosRankSum=1.294;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1557,168,0 chrII 245877 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.85;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,148:151:99:4054,412,0 chrII 246027 . T G 6580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=261;Dels=0.00;FS=5.797;HaplotypeScore=16.9508;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.185;QD=25.21;ReadPosRankSum=2.896;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:6580,703,0 chrII 246059 . G A 6782.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.84;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:6782,703,0 chrII 246172 . G A 6804.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=14.4203;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.22;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:6804,721,0 chrII 246575 . T C 2192 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.92;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2225,240,0 chrII 246579 . A C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.946;QD=20.77;ReadPosRankSum=1.661;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2048,231,0 chrII 246816 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.32;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2354,264,0 chrII 246960 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.21;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3074,321,0 chrII 247040 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.39;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3042,315,0 chrII 247234 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=3.362;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.234;QD=23.53;ReadPosRankSum=0.633;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3929,435,0 chrII 247522 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.59;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3886,408,0 chrII 247531 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.27;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3324,354,0 chrII 247603 . A T 3125 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.29;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3158,345,0 chrII 247759 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.99;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3574,387,0 chrII 247789 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=143;Dels=0.00;FS=4.058;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.742;QD=24.35;ReadPosRankSum=1.683;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3482,369,0 chrII 247813 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.57;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3192,336,0 chrII 247993 . C T 4795.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.51;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4795,499,0 chrII 248152 . A T 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=188;Dels=0.00;FS=6.089;HaplotypeScore=14.7080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.267;QD=23.40;ReadPosRankSum=2.866;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4399,474,0 chrII 248212 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.723;QD=23.83;ReadPosRankSum=1.692;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4170,447,0 chrII 248555 . G T 2454 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2487,270,0 chrII 248659 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.64;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1832,192,0 chrII 248671 . C G 1924 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.35;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1957,210,0 chrII 248728 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=5.133;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.531;QD=22.24;ReadPosRankSum=1.686;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1723,186,0 chrII 248918 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8942;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.65;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3617,373,0 chrII 249073 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4213,439,0 chrII 249400 . G C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3852,408,0 chrII 249533 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3783,420,0 chrII 249570 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.78;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3710,385,0 chrII 249967 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.21;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3643,408,0 chrII 250250 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.05;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1822,198,0 chrII 250316 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3084,318,0 chrII 250482 . C A 3013 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3046,324,0 chrII 250877 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.55;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2684,285,0 chrII 251004 . A T 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.219;QD=21.61;ReadPosRankSum=1.631;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2259,240,0 chrII 251105 . T G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.066;QD=25.58;ReadPosRankSum=1.688;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3991,420,0 chrII 251134 . G T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.72;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4193,430,0 chrII 251548 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.37;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4452,466,0 chrII 251790 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=24.38;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1959,207,0 chrII 251800 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=22.18;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1785,189,0 chrII 251820 . G C 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.022;QD=21.08;ReadPosRankSum=-0.711;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1677,161,0 chrII 251882 . A G 2331 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.79;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2364,258,0 chrII 252013 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.80;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2148,219,0 chrII 252027 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=18.44;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1822,195,0 chrII 252036 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=17.71;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1963,207,0 chrII 252044 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.22;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2183,228,0 chrII 252161 . C G 3087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2496;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.50;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3120,333,0 chrII 252193 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.281;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.895;QD=24.18;ReadPosRankSum=1.709;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3603,387,0 chrII 252572 . T G 2350 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=13.58;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:2383,264,0 chrII 252578 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=14.44;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2430,255,0 chrII 252589 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=13.83;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2287,246,0 chrII 252599 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5773;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=13.52;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2237,249,0 chrII 252680 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.736;QD=22.95;ReadPosRankSum=1.661;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3374,372,0 chrII 252704 . G T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.10;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3419,355,0 chrII 252792 . T G 4093.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=23.66;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4093,450,0 chrII 253095 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4413,466,0 chrII 253219 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2725,285,0 chrII 253709 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.8622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.97;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4470,466,0 chrII 254030 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3719,388,0 chrII 254124 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.739;QD=23.85;ReadPosRankSum=1.666;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3745,408,0 chrII 254349 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.41;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3278,337,0 chrII 254368 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.30;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3179,351,0 chrII 254409 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4922;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.99;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3177,330,0 chrII 254436 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=134;Dels=0.00;FS=8.598;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.361;QD=20.79;ReadPosRankSum=2.412;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:2819,312,0 chrII 254834 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.80;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2889,300,0 chrII 254853 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.27;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2798,294,0 chrII 254899 . T A 2359 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7769;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.72;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2392,258,0 chrII 254908 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.42;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2341,249,0 chrII 255127 . A G 1528 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.15;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1561,171,0 chrII 255469 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.48;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3142,324,0 chrII 255688 . T A 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=89;Dels=0.00;FS=3.931;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.070;QD=18.84;ReadPosRankSum=1.615;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1710,186,0 chrII 255740 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.36;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2023,204,0 chrII 255743 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.04;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2039,219,0 chrII 255828 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.91;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2472,267,0 chrII 256267 . C A 2542 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2575,276,0 chrII 256925 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.742;QD=24.29;ReadPosRankSum=1.670;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1393,147,0 chrII 256941 . A T 1566 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.73;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1599,168,0 chrII 257430 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.0608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5171,553,0 chrII 257913 . T C 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=214;Dels=0.00;FS=6.947;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.213;QD=22.56;ReadPosRankSum=2.369;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4827,514,0 chrII 258153 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.343;QD=24.12;ReadPosRankSum=1.694;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4390,469,0 chrII 258208 . A C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4761;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.34;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3843,417,0 chrII 258211 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.06;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3839,408,0 chrII 258313 . G C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3951,423,0 chrII 258409 . C A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.60;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3823,414,0 chrII 258851 . T C 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.322;QD=22.80;ReadPosRankSum=1.652;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1994,210,0 chrII 258852 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.90;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1982,213,0 chrII 258896 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.10;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2016,219,0 chrII 258961 . A G 1367 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-1.032;QD=15.36;ReadPosRankSum=1.693;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1400,147,0 chrII 258965 . T A 1401 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=15.57;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1434,156,0 chrII 258971 . C T 1390 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=15.27;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1423,150,0 chrII 259158 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=24.12;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3144,336,0 chrII 259235 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=25.34;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3725,396,0 chrII 259410 . A C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=2.724;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=-2.286;QD=23.14;ReadPosRankSum=2.395;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3157,342,0 chrII 259419 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.437;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-0.152;QD=24.10;ReadPosRankSum=1.677;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3046,330,0 chrII 259438 . A T 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-1.383;QD=21.90;ReadPosRankSum=1.674;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2639,282,0 chrII 259451 . T A 2476 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=22.51;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2509,270,0 chrII 259521 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=22.97;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2376,267,0 chrII 259561 . A G 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;MQRankSum=-2.078;QD=20.40;ReadPosRankSum=2.349;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1522,171,0 chrII 263046 . T C 1657 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=148;QD=7.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:99,113:214:99:1690,183,0 chrII 263153 . C T 266 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.1232;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=11.57;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:299,30,0 chrII 263313 . T C 757 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.055;DP=61;Dels=0.00;FS=4.150;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=16;MQRankSum=2.688;QD=12.41;ReadPosRankSum=2.721;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:6,55:61:68:790,68,0 chrII 263387 . A C 839 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;DP=69;Dels=0.00;FS=21.357;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=28;MQRankSum=2.149;QD=12.16;ReadPosRankSum=0.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,52:69:93:872,93,0 chrII 265775 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.65;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2598,267,0 chrII 265831 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.99;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3107,333,0 chrII 266107 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.40;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2467,255,0 chrII 266250 . A T 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.773;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.674;QD=25.20;ReadPosRankSum=2.321;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2931,306,0 chrII 266324 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.922;QD=23.47;ReadPosRankSum=1.687;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1840,195,0 chrII 266339 . T G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.969;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.771;QD=20.33;ReadPosRankSum=2.369;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1883,201,0 chrII 266358 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.80;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2259,237,0 chrII 266478 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.48;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2334,255,0 chrII 266551 . C G 3074 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.20;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3107,333,0 chrII 266622 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3180;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.015;QD=24.58;ReadPosRankSum=1.701;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2811,297,0 chrII 266791 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.57;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3300,345,0 chrII 266952 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.613;QD=21.49;ReadPosRankSum=1.660;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3149,345,0 chrII 267510 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.95;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1965,207,0 chrII 267525 . T A 2199 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.99;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2232,234,0 chrII 267594 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.30;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2917,306,0 chrII 269396 . C T 5744.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.24;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5744,613,0 chrII 269653 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.9877;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.05;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2033,213,0 chrII 271446 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.6071;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.77;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4231,439,0 chrII 274614 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2820,291,0 chrII 274729 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3387,349,0 chrII 277912 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.682;QD=24.07;ReadPosRankSum=1.640;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4574,492,0 chrII 286486 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.16;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3793,408,0 chrII 287483 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.71;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5193,550,0 chrII 290619 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.7750;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.04;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2509,261,0 chrII 291464 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.68;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4491,469,0 chrII 292716 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=3.842;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.643;QD=23.42;ReadPosRankSum=1.620;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3700,402,0 chrII 292835 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.60;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3518,367,0 chrII 293099 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2525;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.67;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4107,421,0 chrII 295710 . C G 5430.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.14;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5430,586,0 chrII 295912 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=5.085;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.965;QD=22.93;ReadPosRankSum=1.666;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3646,405,0 chrII 296073 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.25;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1563,165,0 chrII 296082 . C A 1242 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.79;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1275,135,0 chrII 297226 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.71;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3632,379,0 chrII 297482 . A G 6421.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.9394;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.58;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6421,691,0 chrII 298141 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3721,385,0 chrII 298721 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.53;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3883,409,0 chrII 298966 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.247;QD=23.61;ReadPosRankSum=1.628;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3197,339,0 chrII 298990 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.63;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3011,312,0 chrII 299034 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.506;QD=24.64;ReadPosRankSum=1.679;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3236,345,0 chrII 299174 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.425;QD=23.28;ReadPosRankSum=1.710;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3702,399,0 chrII 299196 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=160;Dels=0.00;FS=2.981;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.552;QD=21.55;ReadPosRankSum=2.418;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3448,366,0 chrII 299389 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=182;Dels=0.00;FS=3.132;HaplotypeScore=9.9977;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.373;QD=24.18;ReadPosRankSum=1.713;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4400,469,0 chrII 299524 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8399;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=17.38;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3267,348,0 chrII 299553 . A T 251.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.873;DP=209;Dels=0.01;FS=2.124;HaplotypeScore=348.3432;MLEAC=1;MLEAF=0.500;MQ=39.91;MQ0=0;MQRankSum=1.492;QD=1.20;ReadPosRankSum=-4.854;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:160,46:207:99:281,0,1238 chrII 299680 . T G 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=4.146;HaplotypeScore=11.9650;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.333;QD=21.53;ReadPosRankSum=1.683;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4608,504,0 chrII 299708 . G A 4422.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.4579;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.00;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4422,457,0 chrII 299759 . C T 4769.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=23.15;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4769,499,0 chrII 299803 . C A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.79;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4616,472,0 chrII 300111 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=24.45;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2918,321,0 chrII 301044 . C T 3743.01 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=15;QD=22.02;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3743,396,0 chrII 301399 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.804;QD=21.99;ReadPosRankSum=1.661;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2166,228,0 chrII 301406 . T A 2113 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.78;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2146,240,0 chrII 301455 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.50;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2377,255,0 chrII 301493 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.67;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2985,318,0 chrII 301549 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=24.06;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4523,475,0 chrII 301569 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=195;Dels=0.00;FS=6.060;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.411;QD=21.41;ReadPosRankSum=2.849;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4174,444,0 chrII 301570 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-1.281;QD=21.71;ReadPosRankSum=1.714;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4168,439,0 chrII 301937 . T A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.12;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4848,534,0 chrII 302104 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=2.850;HaplotypeScore=12.0217;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.916;QD=23.37;ReadPosRankSum=2.424;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4464,486,0 chrII 302245 . G C 4661.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.40;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4661,499,0 chrII 302473 . T C 5933.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.4582;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.12;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5933,637,0 chrII 302839 . T G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.298;QD=23.33;ReadPosRankSum=1.684;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5039,549,0 chrII 303125 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.60;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3207,336,0 chrII 303446 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2960,315,0 chrII 303528 . C G 2398 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2431,264,0 chrII 304472 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4776,490,0 chrII 306218 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.24;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1948,207,0 chrII 306242 . T G 1749 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.71;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1782,198,0 chrII 308890 . A G 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.096;QD=22.57;ReadPosRankSum=1.662;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1139,123,0 chrII 314198 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=227;Dels=0.00;FS=7.233;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.589;QD=23.95;ReadPosRankSum=2.428;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5437,583,0 chrII 315267 . G T 2930 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2963,309,0 chrII 315318 . T A 3160 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3193,345,0 chrII 315453 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2748,288,0 chrII 316903 . C T 1024 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.76;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1057,114,0 chrII 318379 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.315;QD=23.90;ReadPosRankSum=1.701;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2662,288,0 chrII 319900 . G A 4125.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.31;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4125,444,0 chrII 320188 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2341,252,0 chrII 320415 . T A 1717 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=23.20;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1750,186,0 chrII 320539 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=6.672;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.250;QD=23.34;ReadPosRankSum=1.644;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1877,210,0 chrII 320583 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=21.99;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2122,219,0 chrII 320597 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=18.50;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2031,210,0 chrII 320632 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=15.72;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2406,252,0 chrII 320638 . C G 2252 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=14.82;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2285,252,0 chrII 320644 . T G 2230 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=14.97;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2263,240,0 chrII 320656 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=16.17;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2766,294,0 chrII 320788 . A T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.5807;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.50;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4435,463,0 chrII 320851 . T C 4878.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.91;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4878,525,0 chrII 320886 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.8590;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.74;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5394,580,0 chrII 320988 . C A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3551,372,0 chrII 321385 . C A 3138 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.52;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3171,345,0 chrII 321438 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=6.124;HaplotypeScore=16.6396;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.307;QD=23.75;ReadPosRankSum=2.392;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3049,324,0 chrII 321553 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2428,249,0 chrII 321857 . G C 3074 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.99;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3107,333,0 chrII 321906 . A G 2664 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.67;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2697,282,0 chrII 322122 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.408;QD=22.11;ReadPosRankSum=1.691;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3758,405,0 chrII 322182 . A T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3973,435,0 chrII 322479 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.74;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3466,384,0 chrII 322610 . G C 2820 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.36;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2853,303,0 chrII 322620 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.84;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2938,309,0 chrII 322797 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3793;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.79;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4592,487,0 chrII 322869 . A G 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=220;Dels=0.00;FS=6.058;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.482;QD=22.86;ReadPosRankSum=2.940;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:5030,543,0 chrII 322968 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=199;Dels=0.00;FS=11.354;HaplotypeScore=17.8114;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.291;QD=20.88;ReadPosRankSum=2.913;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4155,462,0 chrII 323106 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.16;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3404,363,0 chrII 323184 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3641,396,0 chrII 323214 . C G 2982 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.30;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3015,321,0 chrII 323577 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.1081;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.97;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5322,588,0 chrII 324106 . A C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3370,357,0 chrII 324220 . G A 2468 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2501,270,0 chrII 324455 . T A 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=2.864;HaplotypeScore=11.0074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.845;QD=25.32;ReadPosRankSum=2.406;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4304,451,0 chrII 324525 . G A 4812.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.06;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4812,508,0 chrII 324887 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=188;Dels=0.00;FS=5.721;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.995;QD=22.93;ReadPosRankSum=2.931;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4311,474,0 chrII 324926 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=8.461;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.715;QD=22.42;ReadPosRankSum=2.421;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3924,417,0 chrII 325007 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.25;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3952,426,0 chrII 325175 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.006;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.493;QD=22.53;ReadPosRankSum=2.416;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3312,363,0 chrII 325202 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.80;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3603,378,0 chrII 325550 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=6.136;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.317;QD=22.83;ReadPosRankSum=2.385;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4361,463,0 chrII 325595 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=183;Dels=0.00;FS=9.096;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=21.73;ReadPosRankSum=3.401;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:4,176:183:99:3976,426,0 chrII 325701 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=202;Dels=0.00;FS=3.029;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.128;QD=23.96;ReadPosRankSum=2.425;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4839,528,0 chrII 326112 . A T 3035 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.39;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3068,313,0 chrII 326179 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.57;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2948,312,0 chrII 326297 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=108;Dels=0.00;FS=2.592;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.337;QD=24.44;ReadPosRankSum=2.898;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2672,285,0 chrII 326357 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.75;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2627,276,0 chrII 326372 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.01;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2564,267,0 chrII 326394 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.16;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2471,264,0 chrII 326660 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.43;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3039,321,0 chrII 326680 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=20.86;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2766,303,0 chrII 326704 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=18.66;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2739,282,0 chrII 326734 . T A 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.680;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;MQRankSum=-1.265;QD=14.06;ReadPosRankSum=0.687;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1804,192,0 chrII 326744 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.8188;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=13.77;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:1865,198,0 chrII 326754 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=14.16;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1789,192,0 chrII 326757 . A T 1646 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;QD=12.47;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1679,192,0 chrII 326765 . G T 1711 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;QD=12.86;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1744,183,0 chrII 326899 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=25.48;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2836,291,0 chrII 326919 . A T 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=3.048;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-0.604;QD=23.58;ReadPosRankSum=2.340;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2697,279,0 chrII 327083 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.137;QD=25.03;ReadPosRankSum=1.705;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3212,345,0 chrII 327098 . C A 2889 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=24.69;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2922,315,0 chrII 327156 . T A 1898 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.07;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1931,207,0 chrII 327179 . A G 2089 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.46;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2122,225,0 chrII 327300 . C A 2345 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.68;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2378,252,0 chrII 327327 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.92;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1623,174,0 chrII 327363 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.05;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1338,150,0 chrII 327403 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.41;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1717,180,0 chrII 327596 . A G 1855 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.19;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1888,201,0 chrII 327608 . C G 1825 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.99;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1858,201,0 chrII 327972 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.51;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3097,324,0 chrII 327989 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5594;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.87;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2833,315,0 chrII 328001 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=8.762;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.663;QD=21.62;ReadPosRankSum=2.392;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2801,294,0 chrII 328068 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.26;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3494,366,0 chrII 328093 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.59;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3562,390,0 chrII 328179 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.2800;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.38;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2983,315,0 chrII 328278 . A C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.819;QD=21.44;ReadPosRankSum=1.678;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2799,297,0 chrII 328525 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.087;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.611;QD=20.68;ReadPosRankSum=1.702;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2390,261,0 chrII 328531 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.31;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2443,255,0 chrII 328557 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=3.007;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.033;QD=19.14;ReadPosRankSum=2.295;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2157,237,0 chrII 328647 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2883,303,0 chrII 328908 . A G 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=128;Dels=0.00;FS=11.038;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=24.21;ReadPosRankSum=2.372;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,125:128:99:3132,342,0 chrII 329472 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=14.789;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.567;QD=20.45;ReadPosRankSum=2.401;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2119,225,0 chrII 329583 . C A 2229 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.77;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2262,249,0 chrII 329654 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.25;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1573,162,0 chrII 329730 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.94;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2350,249,0 chrII 329757 . C A 2400 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.43;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2433,264,0 chrII 329976 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.43;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2598,282,0 chrII 330203 . T A 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=5.470;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.655;QD=22.55;ReadPosRankSum=1.685;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1702,177,0 chrII 330495 . C A 1576 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1609,177,0 chrII 330647 . C T 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.5690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.437;QD=23.92;ReadPosRankSum=-1.505;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2616,259,0 chrII 331253 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.56;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3816,397,0 chrII 331350 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=6.389;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.631;QD=21.21;ReadPosRankSum=2.382;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3861,406,0 chrII 331446 . T A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.93;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3706,399,0 chrII 331527 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.19;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4718,510,0 chrII 331557 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.07;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4387,460,0 chrII 331783 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.57;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4195,442,0 chrII 331804 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=6.252;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.250;QD=23.03;ReadPosRankSum=2.392;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3961,423,0 chrII 331937 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.568;QD=23.67;ReadPosRankSum=1.649;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3015,327,0 chrII 331973 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.45;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2964,318,0 chrII 332399 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;MQRankSum=-0.412;QD=19.71;ReadPosRankSum=1.691;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1689,183,0 chrII 332412 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=19.39;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1778,189,0 chrII 332422 . G T 1655 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=19.02;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1688,174,0 chrII 332452 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=13.12;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1096,117,0 chrII 332471 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.71;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1839,189,0 chrII 332654 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.85;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3792,408,0 chrII 332772 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=2.588;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.157;QD=23.15;ReadPosRankSum=2.384;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3449,372,0 chrII 332940 . C G 2107 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.67;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2140,231,0 chrII 332992 . C G 2042 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=24.90;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2075,222,0 chrII 333015 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=24.13;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1867,198,0 chrII 333043 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.18;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1685,177,0 chrII 333044 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.18;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1685,177,0 chrII 333194 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=17.10;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1572,165,0 chrII 333196 . A G 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=8.281;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.944;QD=16.42;ReadPosRankSum=2.395;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1511,162,0 chrII 333214 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.85;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1711,192,0 chrII 333270 . A T 2491 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.59;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2524,261,0 chrII 333321 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.68;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2763,285,0 chrII 333347 . T A 2703 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.28;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2736,297,0 chrII 333382 . T A 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.759;QD=23.01;ReadPosRankSum=1.685;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3359,351,0 chrII 334051 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.90;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1539,159,0 chrII 334070 . T C 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.070;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.451;QD=22.58;ReadPosRankSum=1.637;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1681,183,0 chrII 334336 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.70;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1100,114,0 chrII 334452 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2028,219,0 chrII 335049 . T A 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.439;DP=232;Dels=0.00;FS=2.348;HaplotypeScore=22.0237;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.526;QD=21.83;ReadPosRankSum=-1.065;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:5064,478,0 chrII 335310 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.3628;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.305;QD=23.42;ReadPosRankSum=1.680;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4661,499,0 chrII 336720 . G A 5504.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.25;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5504,568,0 chrII 336747 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=188;Dels=0.00;FS=8.932;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.351;QD=23.42;ReadPosRankSum=3.330;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4403,483,0 chrII 337074 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.71;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3068,336,0 chrII 337088 . A C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=6.049;HaplotypeScore=8.1923;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.072;QD=19.66;ReadPosRankSum=2.114;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3061,327,0 chrII 337181 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=6.880;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;MQRankSum=0.722;QD=24.86;ReadPosRankSum=2.420;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:4127,441,0 chrII 337320 . C A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.1656;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.00;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4875,517,0 chrII 337526 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.716;HaplotypeScore=16.2676;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.264;QD=22.20;ReadPosRankSum=1.715;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4462,471,0 chrII 337567 . A G 6072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.0031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.011;QD=22.24;ReadPosRankSum=1.693;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:1,268:273:99:6072,652,0 chrII 337611 . T C 6777.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6777,715,0 chrII 337897 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2406,258,0 chrII 338038 . G C 2227 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2260,246,0 chrII 338656 . A T 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.602;QD=21.96;ReadPosRankSum=1.696;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4172,442,0 chrII 338664 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=184;Dels=0.00;FS=3.029;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.167;QD=21.71;ReadPosRankSum=2.343;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3995,423,0 chrII 339083 . T G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.7451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3912,426,0 chrII 339200 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3297,348,0 chrII 339326 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.73;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3050,327,0 chrII 339413 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=23.22;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3297,348,0 chrII 339511 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.05;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3944,444,0 chrII 339542 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.71;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4621,469,0 chrII 339633 . T C 2919 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=17.58;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2952,318,0 chrII 339634 . G A 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=17.68;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2950,309,0 chrII 339635 . G T 2879 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=17.45;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2912,315,0 chrII 339653 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.297;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-0.203;QD=16.68;ReadPosRankSum=1.677;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3185,339,0 chrII 339674 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=17.34;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:3693,379,0 chrII 339739 . T C 5875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.900;QD=22.77;ReadPosRankSum=1.705;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5875,633,0 chrII 339902 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.78;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4363,468,0 chrII 339903 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.419;QD=20.34;ReadPosRankSum=1.699;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4291,462,0 chrII 339966 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=20.0405;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.278;QD=21.21;ReadPosRankSum=0.485;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4072,432,0 chrII 340166 . A T 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.255;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.491;QD=24.46;ReadPosRankSum=1.715;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4916,514,0 chrII 340305 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.090;QD=24.01;ReadPosRankSum=1.686;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3625,390,0 chrII 340466 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3257,337,0 chrII 340644 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.95;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3329,354,0 chrII 340743 . A C 2930 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2963,318,0 chrII 340824 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.26;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2793,303,0 chrII 341038 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.76;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4147,444,0 chrII 341186 . T C 4851.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.50;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4851,534,0 chrII 341216 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4268;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.30;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4349,457,0 chrII 341233 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.896;QD=21.40;ReadPosRankSum=2.370;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3959,432,0 chrII 341391 . T A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=25.00;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3725,408,0 chrII 341451 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=151;Dels=0.00;FS=6.010;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=2.807;QD=24.09;ReadPosRankSum=2.927;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3637,396,0 chrII 341499 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=6.420;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=2.290;QD=24.46;ReadPosRankSum=2.370;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:3066,330,0 chrII 341567 . A C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=147;Dels=0.00;FS=4.538;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.159;QD=22.64;ReadPosRankSum=1.708;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3328,363,0 chrII 341775 . C G 4633.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.75;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4633,507,0 chrII 341837 . G A 4948.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=24.37;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4948,514,0 chrII 341985 . C T 4988.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.5889;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=22.37;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4988,517,0 chrII 342004 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=4.146;HaplotypeScore=4.3682;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;MQRankSum=-0.950;QD=17.79;ReadPosRankSum=1.671;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4021,429,0 chrII 342023 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=15.30;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3201,342,0 chrII 342025 . G C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=16.08;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3281,342,0 chrII 342041 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=7.210;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;MQRankSum=-1.656;QD=14.12;ReadPosRankSum=2.411;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:2745,297,0 chrII 342048 . A C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8441;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=0.460;QD=14.61;ReadPosRankSum=0.871;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:2663,285,0 chrII 342383 . G T 2412 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.4542;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.35;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2445,261,0 chrII 342642 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.55;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2684,273,0 chrII 342723 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2045,216,0 chrII 343086 . A T 1255 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1288,132,0 chrII 343406 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.40;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4124,433,0 chrII 343713 . A G 5836.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.53;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5836,642,0 chrII 343762 . C T 6597.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.99;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6597,679,0 chrII 343838 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.92;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4537,489,0 chrII 343845 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.03;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4395,463,0 chrII 343970 . T C 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=207;Dels=0.00;FS=5.984;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.820;QD=23.50;ReadPosRankSum=2.859;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4865,523,0 chrII 344093 . A G 5074.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.16;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5074,541,0 chrII 344211 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.01;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2817,297,0 chrII 344225 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1031;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.94;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2399,264,0 chrII 344282 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.72;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2690,294,0 chrII 344668 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.64;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4065,447,0 chrII 344938 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.17;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3335,351,0 chrII 345172 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3062,318,0 chrII 345288 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2190,234,0 chrII 345609 . C A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.05;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3512,361,0 chrII 346082 . A C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7678;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.787;QD=23.58;ReadPosRankSum=1.706;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3193,348,0 chrII 346270 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=8.189;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.049;QD=22.75;ReadPosRankSum=2.410;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2877,321,0 chrII 346363 . A G 2570 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.48;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2603,276,0 chrII 346437 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.56;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3095,336,0 chrII 346636 . A G 3169 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.76;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3202,339,0 chrII 346663 . A G 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.523;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.383;QD=23.32;ReadPosRankSum=1.703;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2831,300,0 chrII 346741 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.36;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2615,267,0 chrII 347020 . T A 2733 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.1566;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.86;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2766,294,0 chrII 347227 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.51;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2959,315,0 chrII 347231 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.61;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3018,312,0 chrII 347317 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.75;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2357,243,0 chrII 347559 . A T 2025 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.00;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2058,219,0 chrII 347560 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=24.29;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2049,219,0 chrII 347777 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.993;HaplotypeScore=7.7404;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.149;QD=21.69;ReadPosRankSum=2.367;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1963,216,0 chrII 347803 . T A 1719 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.71;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1752,186,0 chrII 347856 . T G 2491 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.66;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2524,267,0 chrII 347935 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.29;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3093,327,0 chrII 348453 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.1013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3335,354,0 chrII 348625 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=3.178;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.118;QD=22.95;ReadPosRankSum=1.710;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3626,390,0 chrII 348820 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.53;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3289,348,0 chrII 349415 . A T 2557 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.04;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2590,273,0 chrII 351521 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.153;QD=20.02;ReadPosRankSum=1.666;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3196,351,0 chrII 351680 . G C 2728 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.92;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2761,297,0 chrII 351686 . T A 2428 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.57;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2461,261,0 chrII 353632 . A G 200 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=14.29;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:233,30,0 chrII 353634 . A G 228 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.29;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:261,33,0 chrII 355349 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3844,408,0 chrII 355626 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2933,312,0 chrII 355836 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=7.609;HaplotypeScore=11.1216;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.894;QD=24.49;ReadPosRankSum=2.352;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4360,466,0 chrII 357199 . A G 5359.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5359,571,0 chrII 357536 . G T 5031.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.16;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5031,529,0 chrII 357707 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.52;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5089,544,0 chrII 359006 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3602,376,0 chrII 359116 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4141;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.69;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2996,321,0 chrII 359225 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.92;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2279,243,0 chrII 359471 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=5.138;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.771;QD=25.03;ReadPosRankSum=1.672;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4331,460,0 chrII 359662 . A G 5509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=229;Dels=0.00;FS=3.015;HaplotypeScore=11.3255;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.925;QD=24.06;ReadPosRankSum=2.320;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:5509,586,0 chrII 359957 . C T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.87;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4278,459,0 chrII 359978 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.52;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4257,448,0 chrII 360862 . T C 4984.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.55;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4984,535,0 chrII 361468 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.30;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2946,315,0 chrII 361648 . G T 1597 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.18;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1630,174,0 chrII 361669 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.31;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1828,192,0 chrII 362082 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.51;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2386,249,0 chrII 362354 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.84;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4237,439,0 chrII 362377 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.03;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3680,396,0 chrII 362638 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.73;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3174,342,0 chrII 362674 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=136;Dels=0.00;FS=10.361;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.147;QD=23.77;ReadPosRankSum=2.321;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3267,348,0 chrII 362702 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.58;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3837,400,0 chrII 362748 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.108;QD=23.43;ReadPosRankSum=1.689;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3773,414,0 chrII 362800 . G C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.3389;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.61;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4135,438,0 chrII 362833 . C T 5004.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.66;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5004,520,0 chrII 362997 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=140;Dels=0.00;FS=2.408;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.119;QD=22.57;ReadPosRankSum=3.396;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3193,342,0 chrII 363121 . G T 1542 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=141.1102;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=17.13;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1575,171,0 chrII 363144 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=-0.130;QD=17.31;ReadPosRankSum=1.602;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1418,150,0 chrII 363154 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=17.61;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1530,168,0 chrII 363224 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=21.20;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2174,225,0 chrII 363228 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=21.41;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2131,231,0 chrII 363277 . C G 1745 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=20.06;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1778,192,0 chrII 363362 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=22.23;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2300,249,0 chrII 363386 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=14.73;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1447,171,0 chrII 363387 . A G 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;MQRankSum=-0.974;QD=14.67;ReadPosRankSum=1.624;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1441,171,0 chrII 363408 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.32;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1782,198,0 chrII 363414 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=17.71;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1751,189,0 chrII 363574 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=24.23;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2068,222,0 chrII 363700 . T G 2363 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=22.72;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2396,258,0 chrII 363721 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=22.24;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2190,231,0 chrII 363749 . A C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.881;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=0.144;QD=17.66;ReadPosRankSum=1.674;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2152,231,0 chrII 363765 . T A 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=141;Dels=0.01;FS=2.392;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-1.266;QD=14.81;ReadPosRankSum=3.320;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2121,228,0 chrII 363768 . C A 2115 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4878;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=13.73;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2148,231,0 chrII 364073 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.02;FS=0.000;HaplotypeScore=40.4706;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=24.20;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4210,447,0 chrII 364161 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=26.01;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4006,429,0 chrII 364216 . T A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.99;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3949,415,0 chrII 364408 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.807;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.110;QD=23.08;ReadPosRankSum=2.370;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2872,306,0 chrII 364419 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.18;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2524,261,0 chrII 364642 . A G 834 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:867,96,0 chrII 364895 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.63;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2542,270,0 chrII 365120 . A C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.680;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.742;QD=19.51;ReadPosRankSum=1.680;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2628,285,0 chrII 365126 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.23;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2687,285,0 chrII 365306 . G A 6321.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.69;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6321,661,0 chrII 365326 . A G 5753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=249;Dels=0.00;FS=4.196;HaplotypeScore=9.1048;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.133;QD=23.10;ReadPosRankSum=1.662;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5753,610,0 chrII 365525 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.9102;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.88;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4552,492,0 chrII 365830 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2106,219,0 chrII 366120 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.91;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3097,321,0 chrII 366264 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.7253;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4482,477,0 chrII 366323 . T A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.1818;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.63;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4902,511,0 chrII 366754 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.1141;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.74;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3175,333,0 chrII 366921 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.16;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2812,303,0 chrII 366946 . G C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.7326;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.70;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3256,348,0 chrII 367200 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.40;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3861,411,0 chrII 367429 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.379;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.181;QD=23.91;ReadPosRankSum=1.712;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4161,444,0 chrII 367502 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.805;QD=20.59;ReadPosRankSum=1.666;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3268,339,0 chrII 367503 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.682;QD=20.22;ReadPosRankSum=1.643;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3207,342,0 chrII 367531 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.95;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2952,312,0 chrII 367587 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.80;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3194,342,0 chrII 367601 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.54;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3446,358,0 chrII 367774 . A T 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.314;QD=21.86;ReadPosRankSum=1.683;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3115,330,0 chrII 367802 . A G 2857 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.86;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2890,312,0 chrII 367884 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.86;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2544,267,0 chrII 368051 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.39;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1869,195,0 chrII 368084 . G T 2158 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.20;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2191,225,0 chrII 368093 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.98;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2110,222,0 chrII 368247 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.971;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.760;QD=26.57;ReadPosRankSum=2.401;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2743,297,0 chrII 368496 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.67;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2850,294,0 chrII 368536 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=130;Dels=0.00;FS=9.547;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=1.147;QD=22.15;ReadPosRankSum=2.931;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2912,318,0 chrII 368563 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.183;QD=22.48;ReadPosRankSum=1.619;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2798,300,0 chrII 368565 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=21.33;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2635,288,0 chrII 368583 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=7.384;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.844;QD=19.88;ReadPosRankSum=2.328;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2439,258,0 chrII 368630 . T G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.528;QD=20.04;ReadPosRankSum=1.673;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2418,255,0 chrII 369040 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2743,288,0 chrII 369085 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.810;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.671;QD=22.54;ReadPosRankSum=1.671;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2603,285,0 chrII 369657 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.53;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2746,288,0 chrII 369692 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.31;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2754,306,0 chrII 369831 . G C 1387 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=16.71;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1420,156,0 chrII 369847 . A C 1732 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.43;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1765,195,0 chrII 370007 . T G 2854 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.1370;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.59;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2887,303,0 chrII 370707 . T C 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=6.471;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.366;QD=22.57;ReadPosRankSum=1.683;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1658,177,0 chrII 370780 . T G 1303 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1336,144,0 chrII 370967 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=26.26;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2633,273,0 chrII 371029 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.452;QD=23.06;ReadPosRankSum=1.431;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3261,333,0 chrII 371139 . T G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=125;Dels=0.00;FS=6.128;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.183;QD=18.78;ReadPosRankSum=1.704;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2380,255,0 chrII 371146 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.24;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2222,243,0 chrII 371555 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.75;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3264,351,0 chrII 371598 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.943;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=134.3673;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.068;QD=0.17;ReadPosRankSum=-2.645;SB=-1.298e+02 GT:AD:DP:GQ:PL 1/1:138,4:142:6:55,6,0 chrII 371601 . C G 44.04 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=56.08;MQ0=0;QD=0.31;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,135:141:9:76,9,0 chrII 371707 . C G 2532 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=19.0493;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.22;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,134:139:99:2565,285,0 chrII 371746 . A C 2941 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4840;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.62;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2974,318,0 chrII 371941 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.65;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2572,273,0 chrII 372481 . A G 8343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.620;QD=24.54;ReadPosRankSum=1.661;SB=-4.574e+03 GT:AD:DP:GQ:PL 1/1:1,338:340:99:8343,892,0 chrII 372547 . A G 7097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=277;Dels=0.00;FS=3.006;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.980;QD=25.62;ReadPosRankSum=2.388;SB=-3.688e+03 GT:AD:DP:GQ:PL 1/1:2,275:277:99:7097,754,0 chrII 372730 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8868;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.62;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4479,483,0 chrII 372845 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3363,357,0 chrII 372954 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3315;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.94;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2804,288,0 chrII 372958 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=4.771;HaplotypeScore=2.8043;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.840;QD=20.79;ReadPosRankSum=0.420;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2819,292,0 chrII 373487 . C G 2124 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=14.75;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2157,231,0 chrII 373488 . A C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.866;QD=14.63;ReadPosRankSum=1.708;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2140,231,0 chrII 373603 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.50;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2193,231,0 chrII 373731 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=26.34;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3820,394,0 chrII 373782 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.03;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3462,375,0 chrII 373849 . G T 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DP=123;Dels=0.00;FS=19.994;HaplotypeScore=114.1729;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.604;QD=0.41;ReadPosRankSum=-3.866;SB=2.03 GT:AD:DP:GQ:PL 1/1:116,6:123:9:83,9,0 chrII 374149 . G C 3897.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3897,420,0 chrII 375303 . T C 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.423;QD=24.65;ReadPosRankSum=1.655;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5571,592,0 chrII 375370 . T A 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=194;Dels=0.00;FS=7.618;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.703;QD=23.89;ReadPosRankSum=2.323;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4634,498,0 chrII 375505 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2998;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.08;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3624,384,0 chrII 375801 . T C 3099 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.99;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3132,336,0 chrII 375942 . T C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=2.582;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.501;QD=25.09;ReadPosRankSum=2.422;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,177:182:99:4567,492,0 chrII 375972 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2190;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=26.07;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5057,526,0 chrII 376093 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=26.29;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4680,481,0 chrII 376172 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.04;FS=0.000;HaplotypeScore=17.0365;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=12.51;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:2373,249,0 chrII 376186 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.60;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3120,327,0 chrII 376375 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=24.58;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2983,315,0 chrII 376703 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.29;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3354,351,0 chrII 376898 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.64;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4257,439,0 chrII 376916 . G T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2359;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.14;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3805,411,0 chrII 377588 . A G 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=220;Dels=0.00;FS=12.799;HaplotypeScore=20.4195;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.251;QD=21.95;ReadPosRankSum=2.950;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4830,543,0 chrII 377622 . T C 5282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=228;Dels=0.00;FS=5.561;HaplotypeScore=13.9055;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.147;QD=23.17;ReadPosRankSum=2.880;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:3,223:228:99:5282,573,0 chrII 377657 . T C 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.065;QD=21.95;ReadPosRankSum=1.646;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5290,573,0 chrII 377735 . C T 5264.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.3873;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.84;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5264,547,0 chrII 377765 . T G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=254;Dels=0.00;FS=6.463;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-1.018;QD=18.28;ReadPosRankSum=2.430;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:4643,490,0 chrII 377771 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=260;Dels=0.00;FS=9.235;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;MQRankSum=-1.833;QD=16.63;ReadPosRankSum=2.895;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:4325,462,0 chrII 377776 . T C 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=255;Dels=0.00;FS=3.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;MQRankSum=-1.622;QD=17.86;ReadPosRankSum=2.392;SB=-3.500e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:4554,486,0 chrII 377807 . G T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=13.85;SB=-3.351e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:3545,393,0 chrII 377820 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=15.29;SB=-3.335e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:3929,423,0 chrII 377867 . G A 5985.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=18.8511;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.07;SB=-3.633e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:5985,637,0 chrII 378164 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.0415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.27;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4743,525,0 chrII 378523 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;QD=21.55;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3266,345,0 chrII 378868 . C G 3565.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3565,375,0 chrII 379311 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=8.313;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.326;QD=21.45;ReadPosRankSum=2.412;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2886,309,0 chrII 379421 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.37;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2931,312,0 chrII 379464 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.74;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2762,294,0 chrII 379470 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.61;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2611,273,0 chrII 379569 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.609;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.463;QD=23.03;ReadPosRankSum=1.698;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2359,252,0 chrII 379598 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.280;QD=23.00;ReadPosRankSum=1.702;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2678,285,0 chrII 379969 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3559;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3049,330,0 chrII 380911 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=30.4518;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.641;QD=18.15;ReadPosRankSum=1.637;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2738,303,0 chrII 380932 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.23;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2622,276,0 chrII 380971 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.16;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2513,264,0 chrII 381279 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.00;FS=3.887;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.658;QD=21.53;ReadPosRankSum=1.658;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2057,219,0 chrII 381431 . A T 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=4.771;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.099;QD=25.81;ReadPosRankSum=1.695;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4800,508,0 chrII 381522 . T C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=18.37;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4097,430,0 chrII 382471 . G T 5785.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.48;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5785,604,0 chrII 382571 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=240;Dels=0.00;FS=5.882;HaplotypeScore=15.0660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.174;QD=21.83;ReadPosRankSum=2.937;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:3,234:240:99:5240,556,0 chrII 382581 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.5040;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.85;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4545,489,0 chrII 382644 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.56;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3654,387,0 chrII 382823 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=150;Dels=0.00;FS=3.582;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.542;QD=24.82;ReadPosRankSum=1.708;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,145:150:99:3723,396,0 chrII 382880 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.33;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3073,318,0 chrII 382911 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.62;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2282,246,0 chrII 382963 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;DP=109;Dels=0.00;FS=17.472;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.262;QD=20.81;ReadPosRankSum=2.019;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2301,243,0 chrII 383124 . A T 2726 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.01;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2759,288,0 chrII 383390 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.20;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3727,402,0 chrII 383707 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.26;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4674,487,0 chrII 383768 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4450,463,0 chrII 384458 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.59;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1850,195,0 chrII 384578 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.50;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2608,267,0 chrII 384692 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2398,255,0 chrII 384884 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8301;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.44;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3375,351,0 chrII 385111 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4060,432,0 chrII 385403 . T G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.326;QD=23.19;ReadPosRankSum=1.708;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3386,372,0 chrII 385445 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.419;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.489;QD=23.42;ReadPosRankSum=1.643;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3677,385,0 chrII 385559 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3556,381,0 chrII 385766 . A T 5212.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.82;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5212,564,0 chrII 385829 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=21.68;ReadPosRankSum=1.696;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4163,453,0 chrII 385925 . A C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.24;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4164,436,0 chrII 386202 . A G 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=17.0206;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.075;QD=14.96;ReadPosRankSum=1.657;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:81:736,81,0 chrII 386474 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4138;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.56;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2837,297,0 chrII 386919 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.35;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2975,321,0 chrII 386954 . A T 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.495;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.828;QD=18.96;ReadPosRankSum=1.711;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3085,336,0 chrII 386957 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.82;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3205,339,0 chrII 387022 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.89;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2874,297,0 chrII 387602 . A T 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=135;Dels=0.00;FS=2.981;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.872;QD=20.61;ReadPosRankSum=2.395;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2815,306,0 chrII 387923 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=207;Dels=0.00;FS=5.791;HaplotypeScore=12.1472;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.250;QD=23.04;ReadPosRankSum=2.878;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:4769,513,0 chrII 387954 . C T 5170.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.4382;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.29;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5170,535,0 chrII 388325 . C G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.12;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3398,363,0 chrII 388901 . G A 4395.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.1542;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.76;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4395,457,0 chrII 389007 . G T 3096 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.17;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3129,327,0 chrII 389069 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.30;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2163,228,0 chrII 389242 . T C 642 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.40;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:675,72,0 chrII 389243 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.83;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:688,72,0 chrII 389341 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=1;QD=25.37;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1124,120,0 chrII 389411 . A C 788 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=1;QD=21.30;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:821,87,0 chrII 389492 . T C 514 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=14.69;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:547,57,0 chrII 389557 . G A 677 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=16.51;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:710,75,0 chrII 389570 . C T 490 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=6.5226;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=13.61;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:57:523,57,0 chrII 389571 . C T 500 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=14.71;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:533,57,0 chrII 389585 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=18.08;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:702,75,0 chrII 389614 . A G 536 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=18.48;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:569,63,0 chrII 389620 . G A 529 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=19.59;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:562,60,0 chrII 389683 . G A 330 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=12.22;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:39:363,39,0 chrII 389693 . T C 355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-0.578;QD=10.76;ReadPosRankSum=1.628;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:42:388,42,0 chrII 389867 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.70;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1875,195,0 chrII 389875 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=2.694;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.885;QD=20.07;ReadPosRankSum=2.322;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1960,213,0 chrII 389935 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.88;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2081,213,0 chrII 390133 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.597;QD=21.55;ReadPosRankSum=1.645;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2597,285,0 chrII 390252 . C T 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.483;QD=24.53;ReadPosRankSum=-0.125;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3099,333,0 chrII 390461 . A T 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.085;QD=22.74;ReadPosRankSum=1.704;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2830,306,0 chrII 390659 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.080;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.797;QD=22.78;ReadPosRankSum=1.622;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2926,315,0 chrII 390676 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.30;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2875,303,0 chrII 390823 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.94;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2595,270,0 chrII 390895 . A T 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=6.311;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.886;QD=22.21;ReadPosRankSum=2.335;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2409,261,0 chrII 391457 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3363,363,0 chrII 391731 . T A 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.076;HaplotypeScore=10.5513;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.009;QD=23.73;ReadPosRankSum=1.715;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4723,493,0 chrII 392090 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.74;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3941,412,0 chrII 392135 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.21;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3553,372,0 chrII 392182 . T A 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.515;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.887;QD=24.01;ReadPosRankSum=1.669;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3937,414,0 chrII 392522 . G A 219.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.0502;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=1.74;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:27:252,27,0 chrII 392785 . T G 4159.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.37;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4159,453,0 chrII 392881 . C T 113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=156;Dels=0.00;FS=2.044;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=42.56;MQ0=0;MQRankSum=-5.069;QD=0.72;ReadPosRankSum=-7.339;SB=-5.930e+02 GT:AD:DP:GQ:PL 0/1:84,71:156:99:143,0,1375 chrII 392904 . A T 560.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=21.6463;MLEAC=1;MLEAF=0.500;MQ=41.77;MQ0=0;MQRankSum=-4.316;QD=3.73;ReadPosRankSum=-7.903;SB=-3.940e+02 GT:AD:DP:GQ:PL 0/1:102,48:150:99:590,0,709 chrII 393191 . A T 3104 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0465;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.25;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3137,330,0 chrII 393269 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.854;HaplotypeScore=9.9024;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.815;QD=23.26;ReadPosRankSum=1.707;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3219,339,0 chrII 393489 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8234;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.90;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3609,376,0 chrII 393507 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.55;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3266,345,0 chrII 393519 . A T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.84;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3516,366,0 chrII 393698 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.21;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4441,460,0 chrII 393708 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=208;Dels=0.00;FS=6.388;HaplotypeScore=9.0348;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.842;QD=21.17;ReadPosRankSum=2.390;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4403,466,0 chrII 394376 . G A 5729.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.01;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5729,627,0 chrII 394415 . C A 6193.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.3393;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.29;SB=-3.444e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6193,649,0 chrII 394430 . C T 5963.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.1778;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.67;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5963,648,0 chrII 394726 . G C 2880 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.55;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,173:174:99:2913,312,0 chrII 394873 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1123,117,0 chrII 395030 . A G 325 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.11;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:358,39,0 chrII 395115 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.89;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:75:705,75,0 chrII 395218 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1208,129,0 chrII 395258 . C A 1446 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1479,165,0 chrII 395349 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.23;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2455,261,0 chrII 395756 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.23;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4599,478,0 chrII 395853 . C T 5352.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.6300;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.37;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5352,556,0 chrII 395881 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.40;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4540,475,0 chrII 396556 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=3.229;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.189;QD=23.17;ReadPosRankSum=1.681;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4772,528,0 chrII 396793 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.343;QD=23.68;ReadPosRankSum=1.714;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4689,519,0 chrII 396967 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.839;QD=22.11;ReadPosRankSum=1.711;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3604,381,0 chrII 396972 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.21;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3393,381,0 chrII 397114 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.91;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4160,439,0 chrII 397162 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=150;Dels=0.00;FS=2.898;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.388;QD=23.00;ReadPosRankSum=2.400;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3450,369,0 chrII 397435 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=4.440;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.457;QD=25.14;ReadPosRankSum=1.695;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4752,507,0 chrII 397645 . A G 5071.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.70;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5071,558,0 chrII 397813 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=185;Dels=0.00;FS=6.896;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=22.23;ReadPosRankSum=2.396;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4112,441,0 chrII 397849 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3802,417,0 chrII 397984 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.46;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4012,418,0 chrII 398292 . G A 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;DP=98;Dels=0.00;FS=3.578;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.707;QD=22.26;ReadPosRankSum=1.626;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2214,217,0 chrII 398314 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.63;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2002,210,0 chrII 399535 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4366,454,0 chrII 399796 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3366,363,0 chrII 399991 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.44;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3568,393,0 chrII 400386 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.28;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3448,366,0 chrII 400486 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4530,478,0 chrII 400827 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=118;Dels=0.00;FS=6.441;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.032;QD=22.04;ReadPosRankSum=2.281;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2634,288,0 chrII 400907 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2825,294,0 chrII 401143 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=2.860;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.425;QD=23.41;ReadPosRankSum=2.413;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3217,357,0 chrII 401604 . C G 4048.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1937;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.88;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4048,441,0 chrII 401612 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=3.031;HaplotypeScore=7.6061;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.269;QD=22.08;ReadPosRankSum=2.408;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3975,423,0 chrII 401915 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.22;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3633,387,0 chrII 402150 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=173;Dels=0.00;FS=8.899;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.869;QD=23.84;ReadPosRankSum=3.327;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:4,168:173:99:4125,439,0 chrII 402249 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=6.513;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.547;QD=23.19;ReadPosRankSum=2.421;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4035,441,0 chrII 403146 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.90;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3188,333,0 chrII 403244 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.71;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5121,529,0 chrII 403354 . T C 5050.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.60;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5050,541,0 chrII 403369 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.247;QD=21.39;ReadPosRankSum=1.668;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4662,496,0 chrII 403621 . C G 2870 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.60;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2903,306,0 chrII 403763 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.027;QD=23.36;ReadPosRankSum=1.650;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3046,327,0 chrII 403944 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.72;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2896,309,0 chrII 403997 . C G 3164 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.15;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3197,342,0 chrII 404067 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.47;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3154,333,0 chrII 404090 . A G 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.605;QD=19.33;ReadPosRankSum=1.705;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2488,261,0 chrII 404101 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=5.1033;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.07;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2582,270,0 chrII 404250 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.56;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2167,234,0 chrII 404406 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.1790;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=26.05;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3621,384,0 chrII 404586 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.35;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3129,327,0 chrII 404589 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.53;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2998,315,0 chrII 404662 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.88;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4267,445,0 chrII 405122 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3863,420,0 chrII 405275 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.98;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2262,234,0 chrII 405569 . A C 1911 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-1.329;QD=22.22;ReadPosRankSum=1.692;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1944,207,0 chrII 405577 . T A 1813 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.58;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1846,201,0 chrII 405578 . A C 1799 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=21.67;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1832,201,0 chrII 405625 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.35;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2103,225,0 chrII 405666 . C A 1670 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=21.14;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1703,189,0 chrII 405695 . A C 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.222;QD=21.45;ReadPosRankSum=1.688;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1706,183,0 chrII 405713 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=1.264;QD=20.42;ReadPosRankSum=1.685;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1544,168,0 chrII 405716 . A T 1532 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=19.90;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1565,165,0 chrII 405749 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=18.96;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1398,162,0 chrII 405777 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=21.70;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1205,126,0 chrII 405790 . A C 1207 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=21.55;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1240,135,0 chrII 405803 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=41.5599;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=22.65;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1256,132,0 chrII 405845 . T A 1361 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=15.83;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1394,150,0 chrII 405851 . A T 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=98;Dels=0.00;FS=4.305;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=1.518;QD=15.95;ReadPosRankSum=1.696;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1596,165,0 chrII 406051 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=1;QD=18.58;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2355,261,0 chrII 406057 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.291;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=-0.135;QD=18.83;ReadPosRankSum=1.678;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2443,258,0 chrII 406266 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=26.04;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3359,354,0 chrII 406787 . T G 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=221;Dels=0.00;FS=15.202;HaplotypeScore=8.7061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.383;QD=23.05;ReadPosRankSum=3.389;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:5095,561,0 chrII 407113 . T G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.211;QD=21.15;ReadPosRankSum=1.704;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2634,285,0 chrII 407115 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.112;QD=21.18;ReadPosRankSum=1.620;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2659,282,0 chrII 407146 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.747;QD=20.52;ReadPosRankSum=1.700;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2270,243,0 chrII 407450 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.033;QD=23.64;ReadPosRankSum=1.669;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2633,279,0 chrII 407559 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=230.6637;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=14.99;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2192,243,0 chrII 407570 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=14.62;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2080,222,0 chrII 407571 . A G 2038 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=14.35;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2071,225,0 chrII 407645 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.09;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3266,342,0 chrII 407830 . G A 2545 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.47;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2578,276,0 chrII 407831 . A T 2542 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.44;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2575,279,0 chrII 407836 . A G 2617 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=25.41;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2650,285,0 chrII 408020 . A T 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=3.008;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.244;QD=22.40;ReadPosRankSum=2.398;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2206,237,0 chrII 408073 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.25;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2451,255,0 chrII 408095 . C G 2477 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.20;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2510,279,0 chrII 408107 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.40;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2575,270,0 chrII 408292 . G A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.14;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4755,502,0 chrII 408433 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.95;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2955,309,0 chrII 408643 . C T 3037 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=6.7661;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.11;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3070,336,0 chrII 408644 . T G 2990 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=153;Dels=0.00;FS=5.452;HaplotypeScore=7.2844;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-1.289;QD=19.54;ReadPosRankSum=2.886;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:4,147:153:99:3023,313,0 chrII 408652 . G C 3217.04 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.7001;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.86;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3250,345,0 chrII 408801 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=170;Dels=0.00;FS=7.325;HaplotypeScore=14.9067;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.228;QD=22.97;ReadPosRankSum=2.377;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3905,414,0 chrII 408838 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.772;QD=22.93;ReadPosRankSum=1.685;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3393,360,0 chrII 408987 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.78;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2459,255,0 chrII 409116 . A C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.694;QD=22.29;ReadPosRankSum=0.264;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2084,222,0 chrII 409149 . A G 2140 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2173,231,0 chrII 409264 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3271,348,0 chrII 409364 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=10.348;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.441;QD=23.42;ReadPosRankSum=2.421;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4005,450,0 chrII 409999 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=2.991;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.080;QD=24.39;ReadPosRankSum=2.344;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3390,363,0 chrII 410209 . G T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.2135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3870,408,0 chrII 410546 . T C 5865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=250;Dels=0.00;FS=3.548;HaplotypeScore=14.5951;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.231;QD=23.46;ReadPosRankSum=1.718;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5865,625,0 chrII 410961 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7291;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.12;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2423,249,0 chrII 410985 . A G 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=141;Dels=0.00;FS=10.825;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-0.364;QD=13.50;ReadPosRankSum=2.950;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:1936,216,0 chrII 410998 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=12.06;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1577,168,0 chrII 411003 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=12.98;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1694,171,0 chrII 411152 . T A 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.941;QD=23.39;ReadPosRankSum=1.697;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4608,487,0 chrII 412233 . A C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=162;Dels=0.00;FS=4.638;HaplotypeScore=12.4638;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.325;QD=24.81;ReadPosRankSum=1.645;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:4019,435,0 chrII 412403 . T C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.257;QD=23.77;ReadPosRankSum=1.714;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4707,516,0 chrII 412642 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5991;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.021;QD=23.63;ReadPosRankSum=1.711;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,167:171:99:4041,435,0 chrII 413099 . A G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=233;Dels=0.00;FS=2.708;HaplotypeScore=14.7250;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.011;QD=19.27;ReadPosRankSum=2.428;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4489,483,0 chrII 413111 . G A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.81;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4556,478,0 chrII 413117 . T A 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=4.221;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.498;QD=19.75;ReadPosRankSum=1.716;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4385,477,0 chrII 413148 . A T 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=210;Dels=0.00;FS=2.687;HaplotypeScore=9.6917;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.801;QD=20.49;ReadPosRankSum=2.426;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4302,474,0 chrII 413264 . C A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.10;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3334,360,0 chrII 413270 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.25;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3337,351,0 chrII 413321 . C A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.98;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4022,429,0 chrII 413777 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.39;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3672,405,0 chrII 414693 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.63;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4163,436,0 chrII 414849 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.15;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3345,354,0 chrII 414987 . C G 2854 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=30.9882;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.59;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2887,303,0 chrII 415314 . T A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.81;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4465,460,0 chrII 415534 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=23.19;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4591,478,0 chrII 415547 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=21.16;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3999,441,0 chrII 415575 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=20.54;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3676,390,0 chrII 415599 . C A 3196 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=19.73;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3229,333,0 chrII 415607 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.5043;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=19.04;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3023,321,0 chrII 415620 . C A 2736 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.61;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2769,294,0 chrII 415782 . C T 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=68;Dels=0.00;FS=54.384;HaplotypeScore=16.1699;MLEAC=1;MLEAF=0.500;MQ=46.89;MQ0=0;MQRankSum=-1.718;QD=2.50;ReadPosRankSum=-2.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,35:68:99:200,0,329 chrII 415846 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.94;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2235,231,0 chrII 415863 . G C 2303 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.57;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,119:124:99:2336,258,0 chrII 415869 . A C 2454 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.63;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2487,264,0 chrII 415997 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=2.950;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.439;QD=23.50;ReadPosRankSum=2.418;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3619,387,0 chrII 416243 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3968,426,0 chrII 416328 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4137,439,0 chrII 416426 . A C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3834,417,0 chrII 416935 . C A 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.51;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,192,0 chrII 417239 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.56;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2642,285,0 chrII 417346 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9485;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.27;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3568,384,0 chrII 417421 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.99;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3274,348,0 chrII 417468 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=24.28;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2558,273,0 chrII 417503 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=2.649;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.068;QD=23.43;ReadPosRankSum=2.395;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2142,231,0 chrII 417692 . T C 1003 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.522;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=1.116;QD=22.29;ReadPosRankSum=1.655;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1036,111,0 chrII 417694 . T C 984 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=21.87;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1017,108,0 chrII 417699 . G A 1049 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=22.80;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1082,114,0 chrII 417762 . A C 1096 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=22.37;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1129,120,0 chrII 417795 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=22.56;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:913,102,0 chrII 417797 . T C 935 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=23.97;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:968,102,0 chrII 417889 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=22.75;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1239,138,0 chrII 417917 . G C 749 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=16.28;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:782,84,0 chrII 417944 . T A 444 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=9.87;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:477,51,0 chrII 417950 . C T 487 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.07;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:57:520,57,0 chrII 417952 . T G 499 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;MQRankSum=1.578;QD=11.09;ReadPosRankSum=1.655;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:57:532,57,0 chrII 417959 . C T 549 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=10.98;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:582,63,0 chrII 417968 . T C 516 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=10.98;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:60:549,60,0 chrII 417969 . T A 534 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=11.36;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:60:567,60,0 chrII 417980 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=11.53;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:621,66,0 chrII 418007 . G A 581 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=10.96;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:63:614,63,0 chrII 418023 . C T 457 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=8.02;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:54:490,54,0 chrII 418042 . G C 498 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=8.30;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:57:531,57,0 chrII 418045 . T C 467 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=8.19;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:54:500,54,0 chrII 418065 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=11.08;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:75:709,75,0 chrII 418148 . A C 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=4.670;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-0.346;QD=21.98;ReadPosRankSum=1.691;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1923,207,0 chrII 418150 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=22.93;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2005,213,0 chrII 418183 . A T 2721 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=23.66;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2754,285,0 chrII 418255 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=25.36;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3474,358,0 chrII 418348 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=6.156;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-0.554;QD=22.24;ReadPosRankSum=2.419;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3648,393,0 chrII 418383 . C A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=22.35;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3375,354,0 chrII 418399 . A T 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=129;Dels=0.00;FS=2.620;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-1.363;QD=19.22;ReadPosRankSum=2.373;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2512,279,0 chrII 418404 . T G 2395 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=19.63;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2428,258,0 chrII 418420 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=22.06;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2371,243,0 chrII 418450 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-0.805;QD=21.64;ReadPosRankSum=2.381;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1591,168,0 chrII 418451 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=22.31;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1639,168,0 chrII 418484 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.32;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1821,195,0 chrII 418505 . T A 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=11.091;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.192;QD=18.43;ReadPosRankSum=1.655;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1692,177,0 chrII 418524 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.94;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1907,201,0 chrII 418557 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.30;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1434,153,0 chrII 419086 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.88;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3367,351,0 chrII 419139 . C T 2560 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7351;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.27;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2593,270,0 chrII 419197 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.78;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2360,261,0 chrII 419204 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.98;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2320,246,0 chrII 419913 . C G 2582 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.69;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2615,279,0 chrII 419943 . C A 2511 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.04;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2544,270,0 chrII 420402 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5741;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=7.68;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:1462,156,0 chrII 420411 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.4947;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=10.63;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:2032,213,0 chrII 420567 . G T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=22.69;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5377,577,0 chrII 420692 . G A 5448.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.32;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5448,562,0 chrII 420720 . G A 5295.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.15;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5295,576,0 chrII 420843 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.72;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4673,498,0 chrII 421082 . A G 4933.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.05;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4933,520,0 chrII 421116 . C A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.01;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4850,502,0 chrII 421574 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.615;DP=188;Dels=0.00;FS=3.664;HaplotypeScore=10.8442;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.354;QD=22.66;ReadPosRankSum=0.428;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4260,442,0 chrII 421673 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=145;Dels=0.00;FS=8.966;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.550;QD=22.68;ReadPosRankSum=2.170;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:5,140:145:99:3289,348,0 chrII 421692 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.67;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2826,300,0 chrII 421695 . C G 2790 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.79;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2823,300,0 chrII 422076 . C G 2720 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.50;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2753,291,0 chrII 422148 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.93;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2879,309,0 chrII 422164 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.46;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3037,318,0 chrII 422415 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=25.25;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3813,402,0 chrII 422475 . T A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=110;Dels=0.00;FS=6.221;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.331;QD=23.52;ReadPosRankSum=2.315;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2620,276,0 chrII 422583 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=4.058;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.658;QD=24.47;ReadPosRankSum=1.707;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3426,366,0 chrII 422622 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.79;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2722,297,0 chrII 422634 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.17;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2643,279,0 chrII 422762 . T G 2517 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.27;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2550,270,0 chrII 422913 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.44;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3511,361,0 chrII 423054 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3716;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.61;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3257,342,0 chrII 423264 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.954;QD=21.85;ReadPosRankSum=1.693;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1978,213,0 chrII 423351 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.17;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2139,234,0 chrII 423388 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=55.1379;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=1.459;QD=0.15;ReadPosRankSum=-4.356;SB=-6.876e+01 GT:AD:DP:GQ:PL 1/1:58,21:81:6:43,6,0 chrII 423506 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.269;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.759;QD=22.65;ReadPosRankSum=1.675;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2796,300,0 chrII 423518 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.15;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2672,291,0 chrII 423550 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.71;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2418,246,0 chrII 423698 . G T 2561 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.87;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2594,276,0 chrII 423800 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.93;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4138,436,0 chrII 423950 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.740;QD=24.60;ReadPosRankSum=2.421;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4206,453,0 chrII 424031 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.91;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4734,496,0 chrII 424199 . G A 5372.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.87;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5372,559,0 chrII 424346 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.98;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4894,520,0 chrII 424367 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.41;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4331,454,0 chrII 424421 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.976;QD=22.95;ReadPosRankSum=1.669;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3786,405,0 chrII 424448 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.866;QD=20.77;ReadPosRankSum=1.711;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3573,384,0 chrII 424451 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.06;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3816,397,0 chrII 424490 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.56;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3783,405,0 chrII 424607 . A G 3076 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.36;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3109,333,0 chrII 424811 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1981,213,0 chrII 424906 . G A 822 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.08;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:90:855,90,0 chrII 426865 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.46;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3840,400,0 chrII 426936 . G C 4402.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.69;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4402,463,0 chrII 427377 . A G 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.365;QD=21.93;ReadPosRankSum=1.697;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4364,463,0 chrII 427525 . T A 2413 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.20;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2446,255,0 chrII 427545 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.540;QD=21.60;ReadPosRankSum=1.695;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2042,219,0 chrII 427719 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.5702;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.67;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2157,234,0 chrII 427812 . A G 2391 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=5;QD=20.26;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2424,267,0 chrII 427872 . G A 3093 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=5;QD=19.33;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3126,336,0 chrII 427998 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.0942;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.70;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4114,433,0 chrII 428040 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=12.92;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:2720,291,0 chrII 428055 . A T 2645 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=12.84;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2678,270,0 chrII 428058 . A G 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=10.79;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2019,228,0 chrII 428059 . G A 2084 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=11.45;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:2117,228,0 chrII 428060 . C T 2156 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;MQRankSum=-0.880;QD=11.78;ReadPosRankSum=1.637;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:2189,234,0 chrII 428064 . G T 2399 SnpCluster AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=11.06;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:2432,255,0 chrII 428433 . G A 6726.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=22.2974;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.35;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6726,715,0 chrII 428478 . A G 5652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.654;QD=21.99;ReadPosRankSum=1.678;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5652,595,0 chrII 428484 . T G 5362.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.86;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5362,579,0 chrII 428694 . C T 6480.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.39;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6480,694,0 chrII 428751 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=23.12;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5411,559,0 chrII 428805 . T G 6392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=269;Dels=0.00;FS=3.092;HaplotypeScore=14.9844;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.435;QD=23.76;ReadPosRankSum=1.706;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:1,266:269:99:6392,679,0 chrII 428862 . T A 6133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=268;Dels=0.00;FS=7.679;HaplotypeScore=9.4583;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.545;QD=22.88;ReadPosRankSum=2.413;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:6133,666,0 chrII 428886 . A G 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=246;Dels=0.00;FS=5.828;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.596;QD=22.68;ReadPosRankSum=2.874;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:5580,612,0 chrII 428934 . A G 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.489;QD=24.36;ReadPosRankSum=1.699;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5115,546,0 chrII 428982 . G A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.1082;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=24.13;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4753,496,0 chrII 429123 . T G 2552 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=23.85;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2585,273,0 chrII 429124 . C A 2522 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=24.02;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2555,264,0 chrII 429183 . T A 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.683;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.946;QD=20.64;ReadPosRankSum=1.696;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2035,219,0 chrII 429199 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.29;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2077,225,0 chrII 429360 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.09;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1734,192,0 chrII 429746 . A G 5143.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.6648;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=24.15;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5143,570,0 chrII 430040 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.20;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5107,558,0 chrII 430055 . C T 5324.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.21;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5324,559,0 chrII 430067 . A G 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=255;Dels=0.00;FS=4.243;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.754;QD=20.14;ReadPosRankSum=1.705;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5135,544,0 chrII 430145 . A G 6692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=280;Dels=0.00;FS=20.988;HaplotypeScore=18.3334;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.421;QD=23.90;ReadPosRankSum=3.828;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:5,273:280:99:6692,718,0 chrII 430301 . A G 8753.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=363;Dels=0.00;FS=3.424;HaplotypeScore=20.7699;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.541;QD=24.11;ReadPosRankSum=1.694;SB=-4.476e+03 GT:AD:DP:GQ:PL 1/1:1,362:363:99:8753,928,0 chrII 430846 . C A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3307;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.95;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4456,480,0 chrII 431229 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.056;QD=22.61;ReadPosRankSum=1.711;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3708,408,0 chrII 431266 . C A 2845 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.18;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2878,300,0 chrII 431273 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=150;Dels=0.00;FS=11.425;HaplotypeScore=7.6371;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.034;QD=17.57;ReadPosRankSum=2.953;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2669,285,0 chrII 431446 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.56;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4601,487,0 chrII 431479 . A G 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=201;Dels=0.00;FS=4.252;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.536;QD=25.21;ReadPosRankSum=1.714;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:5068,541,0 chrII 431663 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.48;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4822,502,0 chrII 431703 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.35;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3934,406,0 chrII 431781 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=6.3666;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.13;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3049,324,0 chrII 431851 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.78;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2516,270,0 chrII 431912 . A T 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.649;HaplotypeScore=8.5620;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.930;QD=24.82;ReadPosRankSum=1.696;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2391,255,0 chrII 431999 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.30;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2223,237,0 chrII 432022 . A T 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=88;Dels=0.01;FS=8.240;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.977;QD=18.56;ReadPosRankSum=2.393;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1666,171,0 chrII 432025 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.45;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1638,174,0 chrII 432185 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.83;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2511,267,0 chrII 432284 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=154;Dels=0.00;FS=11.175;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.325;QD=21.36;ReadPosRankSum=3.772;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:5,149:154:99:3290,351,0 chrII 432329 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.020;QD=24.36;ReadPosRankSum=1.610;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4166,439,0 chrII 432356 . A G 4203.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.35;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4203,459,0 chrII 432415 . C A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.23;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3780,399,0 chrII 432497 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.08;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4118,441,0 chrII 432974 . G C 4227.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.16;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4227,456,0 chrII 433187 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.03;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2478,264,0 chrII 433196 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.17;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2362,255,0 chrII 433232 . C A 2702 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.15;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2735,288,0 chrII 433640 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.1510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.58;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3647,393,0 chrII 434976 . G T 3001 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3034,324,0 chrII 435236 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.07;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4137,444,0 chrII 435261 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.51;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4117,427,0 chrII 435637 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=2.991;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.272;QD=23.76;ReadPosRankSum=2.347;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3991,423,0 chrII 435843 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.32;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3018,315,0 chrII 436119 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2574,282,0 chrII 437154 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=157;Dels=0.00;FS=6.163;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.247;QD=23.90;ReadPosRankSum=2.418;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3752,399,0 chrII 437187 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.88;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3867,417,0 chrII 437200 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.14;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3445,384,0 chrII 437295 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.84;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2566,279,0 chrII 437307 . A G 2631 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.30;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2664,288,0 chrII 437440 . A T 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.906;QD=25.53;ReadPosRankSum=1.679;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3319,348,0 chrII 437754 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.84;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3354,360,0 chrII 438061 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.83;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2317,255,0 chrII 438126 . A C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.00;FS=3.136;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.511;QD=22.90;ReadPosRankSum=1.699;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2506,273,0 chrII 438190 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.543;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.046;QD=24.78;ReadPosRankSum=1.638;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2808,300,0 chrII 438300 . A C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.809;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.596;QD=24.27;ReadPosRankSum=1.649;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3091,339,0 chrII 438523 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.349;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.493;QD=24.74;ReadPosRankSum=2.400;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3735,399,0 chrII 438582 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.32;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3748,405,0 chrII 438870 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.441;QD=24.21;ReadPosRankSum=1.700;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2623,279,0 chrII 438919 . C G 2026 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2059,216,0 chrII 438954 . T G 2057 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2090,228,0 chrII 439191 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2023,216,0 chrII 439486 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.01;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3109,327,0 chrII 440085 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=6.587;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.017;QD=24.14;ReadPosRankSum=2.401;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3645,387,0 chrII 440220 . A T 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=3.393;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.273;QD=24.08;ReadPosRankSum=1.711;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3997,429,0 chrII 440349 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8924;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.90;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3143,327,0 chrII 441419 . A C 3042 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3075,330,0 chrII 441722 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4254,465,0 chrII 441772 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9544;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.483;QD=23.63;ReadPosRankSum=1.715;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:4986,529,0 chrII 441927 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=183;Dels=0.00;FS=2.964;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.251;QD=23.70;ReadPosRankSum=2.382;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4337,477,0 chrII 442031 . G C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.23;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3359,375,0 chrII 442040 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.23;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3278,354,0 chrII 442059 . G C 2951 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=17.78;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2984,318,0 chrII 442063 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-0.338;QD=16.85;ReadPosRankSum=1.711;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2796,300,0 chrII 442233 . C A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=25.06;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4385,460,0 chrII 442249 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=24.05;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4017,420,0 chrII 442309 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.51;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3162,342,0 chrII 442819 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2711,285,0 chrII 445903 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.99;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4124,427,0 chrII 446343 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.04;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3480,361,0 chrII 447158 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.17;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3661,390,0 chrII 447264 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2211;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.995;QD=23.52;ReadPosRankSum=1.634;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3317,369,0 chrII 447300 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2912,309,0 chrII 447376 . G C 2847 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.96;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2880,321,0 chrII 447536 . G T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.44;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3862,417,0 chrII 447579 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=4.424;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.654;QD=25.83;ReadPosRankSum=1.713;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4675,493,0 chrII 447676 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=180;Dels=0.00;FS=3.860;HaplotypeScore=5.5472;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.808;QD=20.84;ReadPosRankSum=0.366;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3751,399,0 chrII 447685 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=2.831;HaplotypeScore=5.8008;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.487;QD=17.87;ReadPosRankSum=2.383;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:3323,351,0 chrII 447707 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=3.673;HaplotypeScore=3.4825;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.414;QD=15.91;ReadPosRankSum=1.715;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:3278,354,0 chrII 447726 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.0470;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=15.95;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3557,381,0 chrII 447876 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=24.34;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4479,472,0 chrII 448135 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6552;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.23;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3256,357,0 chrII 448470 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.1917;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3753,411,0 chrII 448634 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=2.989;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.337;QD=23.41;ReadPosRankSum=2.367;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3464,369,0 chrII 449152 . T A 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=3.875;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.167;QD=23.53;ReadPosRankSum=1.686;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5341,577,0 chrII 449253 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.6147;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.557;QD=23.39;ReadPosRankSum=1.613;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4094,404,0 chrII 449416 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6345;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2969,312,0 chrII 449588 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.28;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3117,336,0 chrII 450377 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.506;QD=22.26;ReadPosRankSum=1.632;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3105,330,0 chrII 450938 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=131;Dels=0.00;FS=3.038;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.211;QD=24.16;ReadPosRankSum=1.763;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:3198,342,0 chrII 451124 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.27;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3240,342,0 chrII 451343 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.31;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3836,414,0 chrII 451344 . A T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.05;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3852,417,0 chrII 451373 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.92;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4209,442,0 chrII 451442 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.18;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3971,412,0 chrII 451454 . G T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.40;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3724,402,0 chrII 451599 . C T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.22;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5377,579,0 chrII 452036 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=136;Dels=0.00;FS=2.568;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.533;QD=22.00;ReadPosRankSum=2.919;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3025,318,0 chrII 452218 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=24.36;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2274,246,0 chrII 452365 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.49;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2304,243,0 chrII 452408 . C T 1078 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=14.00;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1111,117,0 chrII 452468 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5028;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.20;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2349,264,0 chrII 452891 . G A 6308.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=16.6334;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.54;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6308,655,0 chrII 453044 . C T 5300.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.94;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5300,556,0 chrII 453048 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=219;Dels=0.00;FS=9.543;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.197;QD=23.51;ReadPosRankSum=2.404;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:5148,547,0 chrII 453417 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=17.2587;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.06;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1947,201,0 chrII 453556 . A T 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.119;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.558;QD=23.12;ReadPosRankSum=1.618;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2831,303,0 chrII 453581 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.52;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2639,288,0 chrII 453718 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.31;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3671,379,0 chrII 454021 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.28;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3937,423,0 chrII 454027 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.94;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3928,420,0 chrII 454122 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=2.882;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.607;QD=21.49;ReadPosRankSum=2.393;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3783,414,0 chrII 454135 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=2.847;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.733;QD=21.74;ReadPosRankSum=2.386;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4174,456,0 chrII 454261 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.12;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4267,448,0 chrII 454272 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.386;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.989;QD=20.09;ReadPosRankSum=1.715;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4119,438,0 chrII 454336 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=216;Dels=0.00;FS=9.852;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.667;QD=21.39;ReadPosRankSum=2.958;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:3,211:216:99:4620,496,0 chrII 454371 . T A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.85;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5081,535,0 chrII 454467 . T G 5026.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=24.40;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5026,541,0 chrII 454488 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=7.5164;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.462;QD=24.24;ReadPosRankSum=2.298;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4726,502,0 chrII 454547 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=161;Dels=0.00;FS=8.026;HaplotypeScore=14.2028;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.510;QD=21.66;ReadPosRankSum=3.766;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:5,155:161:99:3488,378,0 chrII 454587 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.854;HaplotypeScore=9.7569;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.716;QD=20.84;ReadPosRankSum=2.414;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2950,315,0 chrII 454598 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.34;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2575,270,0 chrII 454753 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.820;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.452;QD=23.75;ReadPosRankSum=2.386;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3681,393,0 chrII 454884 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.1728;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.395;QD=23.82;ReadPosRankSum=1.713;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4382,477,0 chrII 455010 . T A 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=7.131;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.908;QD=24.44;ReadPosRankSum=2.288;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5205,538,0 chrII 455029 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=190;Dels=0.00;FS=14.356;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.253;QD=23.04;ReadPosRankSum=3.368;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:4378,471,0 chrII 455204 . C T 6587.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.67;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6587,697,0 chrII 455407 . A T 6720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=17.6740;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.200;QD=22.18;ReadPosRankSum=1.709;SB=-3.577e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:6720,724,0 chrII 455916 . C T 6440.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=25.3975;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.82;SB=-3.845e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:6440,700,0 chrII 455991 . A G 6066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.768;DP=356;Dels=0.00;FS=11.385;HaplotypeScore=28.9714;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.099;QD=17.04;ReadPosRankSum=3.825;SB=-3.994e+03 GT:AD:DP:GQ:PL 1/1:5,351:356:99:6066,669,0 chrII 456055 . G A 7229.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.97;SB=-3.932e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:7229,787,0 chrII 456132 . T G 6768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=313;Dels=0.00;FS=3.480;HaplotypeScore=21.9049;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.811;QD=21.62;ReadPosRankSum=1.699;SB=-3.667e+03 GT:AD:DP:GQ:PL 1/1:1,311:313:99:6768,738,0 chrII 456187 . G C 5340.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.72;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5340,576,0 chrII 456231 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=238;Dels=0.00;FS=2.574;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.242;QD=19.08;ReadPosRankSum=2.937;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:4542,516,0 chrII 456240 . G A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.1065;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.79;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4909,522,0 chrII 456336 . G T 6113.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.1498;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.85;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6113,646,0 chrII 456431 . C G 5463.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=23.75;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5463,571,0 chrII 456442 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.8652;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.192;QD=22.93;ReadPosRankSum=1.686;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:5206,516,0 chrII 456535 . C T 4840.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.72;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4840,508,0 chrII 456657 . G T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.75;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4254,459,0 chrII 456662 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=21.37;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4316,448,0 chrII 456718 . G C 2972 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=15.24;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3005,318,0 chrII 456733 . C T 724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=191;Dels=0.00;FS=4.356;HaplotypeScore=236.9001;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-4.563;QD=3.79;ReadPosRankSum=-9.464;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:117,72:191:81:757,81,0 chrII 456771 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=15.65;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2600,273,0 chrII 457002 . G A 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6858;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.098;QD=20.83;ReadPosRankSum=-0.366;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3011,321,0 chrII 457014 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1265;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.54;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3022,318,0 chrII 457048 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.998;QD=19.09;ReadPosRankSum=1.686;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2935,324,0 chrII 457101 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=3.027;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.401;QD=22.24;ReadPosRankSum=2.351;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3358,378,0 chrII 457215 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.10;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2459,258,0 chrII 457395 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:3007,309,0 chrII 457684 . T A 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.261;QD=24.16;ReadPosRankSum=1.614;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3552,367,0 chrII 457818 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4661,493,0 chrII 458104 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.9802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4225,442,0 chrII 458570 . T C 4457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.007;QD=25.47;ReadPosRankSum=2.422;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4457,477,0 chrII 458604 . A C 4669.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.97;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4669,499,0 chrII 458640 . G C 4734.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.40;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4734,505,0 chrII 458748 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=3.776;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.542;QD=24.85;ReadPosRankSum=1.715;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4921,523,0 chrII 458800 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.08;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4200,456,0 chrII 458813 . G C 4330.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.55;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4330,460,0 chrII 458841 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.68;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4546,475,0 chrII 458919 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4714,484,0 chrII 459048 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.47;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3719,402,0 chrII 459093 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3668,405,0 chrII 459628 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3242,345,0 chrII 459672 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.293;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.078;QD=23.50;ReadPosRankSum=1.659;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3361,363,0 chrII 460202 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=5.691;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-1.683;QD=21.05;ReadPosRankSum=2.912;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3169,336,0 chrII 460203 . T C 3115 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=21.48;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3148,330,0 chrII 460337 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.949;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=1.708;QD=19.81;ReadPosRankSum=1.684;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2906,309,0 chrII 460385 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=24.57;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2957,306,0 chrII 460418 . A T 2831 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=23.59;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2864,306,0 chrII 460459 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=24.76;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3590,372,0 chrII 460520 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=23.81;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3357,357,0 chrII 460561 . A G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.704;QD=20.70;ReadPosRankSum=1.704;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2559,276,0 chrII 460566 . A G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.378;QD=20.08;ReadPosRankSum=2.342;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2342,252,0 chrII 460668 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.01;FS=2.665;HaplotypeScore=12.7395;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.511;QD=25.76;ReadPosRankSum=2.378;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3580,381,0 chrII 460748 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=4.715;HaplotypeScore=143.1226;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.450;QD=24.26;ReadPosRankSum=1.710;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3761,396,0 chrII 460876 . G C 4424.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=24.04;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4424,471,0 chrII 461012 . T C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=191;Dels=0.00;FS=5.848;HaplotypeScore=15.9292;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.196;QD=24.18;ReadPosRankSum=2.931;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4619,501,0 chrII 461079 . T A 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=213;Dels=0.00;FS=2.886;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.086;QD=23.66;ReadPosRankSum=2.369;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5039,532,0 chrII 461088 . A T 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=239;Dels=0.00;FS=8.321;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.474;QD=21.98;ReadPosRankSum=2.347;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5254,562,0 chrII 461298 . A G 4545.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.75;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4545,495,0 chrII 461718 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.99;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2831,309,0 chrII 461771 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.9690;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3404,360,0 chrII 461817 . A G 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=210;Dels=0.00;FS=3.527;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.989;QD=22.20;ReadPosRankSum=1.664;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4663,501,0 chrII 461852 . C G 4603.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4603,487,0 chrII 461887 . G C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.63;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3970,441,0 chrII 462116 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.86;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2936,321,0 chrII 462229 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2579,267,0 chrII 462458 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2619,279,0 chrII 462560 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.58;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1414,153,0 chrII 462587 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.49;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1450,153,0 chrII 462765 . T C 1255 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1288,138,0 chrII 462876 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2083,222,0 chrII 462933 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3806,399,0 chrII 463266 . A C 6088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=270;Dels=0.00;FS=5.468;HaplotypeScore=24.8953;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.034;QD=22.55;ReadPosRankSum=2.966;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:3,264:270:99:6088,672,0 chrII 463354 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.49;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4543,475,0 chrII 463357 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.36;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4540,466,0 chrII 463509 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=195;Dels=0.00;FS=3.032;HaplotypeScore=17.5230;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.775;QD=21.98;ReadPosRankSum=2.373;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4286,457,0 chrII 463791 . G A 8651.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.51;SB=-4.784e+03 GT:AD:DP:GQ:PL 1/1:0,352:353:99:8651,898,0 chrII 464001 . G A 13278.01 filter AC=2;AF=1.00;AN=2;DP=541;Dels=0.01;FS=0.000;HaplotypeScore=31.2312;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=24.54;SB=-4.741e+03 GT:AD:DP:GQ:PL 1/1:0,537:538:99:13278,1394,0 chrII 464079 . T C 6105.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.029;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=40.8756;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=5;MQRankSum=1.697;QD=15.34;ReadPosRankSum=11.389;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:85,312:398:99:6105,411,0 chrII 464148 . T A 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DP=656;Dels=0.00;FS=4.263;HaplotypeScore=49.0484;MLEAC=1;MLEAF=0.500;MQ=50.30;MQ0=0;MQRankSum=-10.878;QD=0.14;ReadPosRankSum=-10.228;SB=-5.610e+02 GT:AD:DP:GQ:PL 0/1:527,129:656:99:120,0,9501 chrII 464151 . C T 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.922;DP=662;Dels=0.00;FS=3.913;HaplotypeScore=58.6402;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=0;MQRankSum=-6.756;QD=0.93;ReadPosRankSum=-10.887;SB=-1.085e+03 GT:AD:DP:GQ:PL 0/1:498,155:662:99:645,0,7959 chrII 464160 . A T 1543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DP=668;Dels=0.00;FS=1.281;HaplotypeScore=59.2086;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=-2.866;QD=2.31;ReadPosRankSum=-10.011;SB=-1.801e+03 GT:AD:DP:GQ:PL 0/1:436,232:668:99:1573,0,6265 chrII 464184 . C T 4384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.185;DP=635;Dels=0.00;FS=10.964;HaplotypeScore=42.0975;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=0;MQRankSum=-0.995;QD=6.90;ReadPosRankSum=-4.527;SB=-2.984e+03 GT:AD:DP:GQ:PL 0/1:338,297:635:99:4384,0,3472 chrII 464193 . C T 3007.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.936;DP=628;Dels=0.00;FS=11.466;HaplotypeScore=26.0156;MLEAC=1;MLEAF=0.500;MQ=48.91;MQ0=0;MQRankSum=-3.493;QD=4.79;ReadPosRankSum=-10.344;SB=-2.258e+03 GT:AD:DP:GQ:PL 0/1:378,246:628:99:3037,0,3931 chrII 464205 . T A,C 7074.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.963;DP=616;Dels=0.00;FS=11.748;HaplotypeScore=32.6783;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.27;MQ0=0;MQRankSum=-1.847;QD=11.48;ReadPosRankSum=2.925;SB=-6.181e+03 GT:AD:DP:GQ:PL 1/2:12,462,141:616:99:7074,1615,1008,5420,0,5252 chrII 464208 . T C 677.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.045;DP=621;Dels=0.00;FS=1.206;HaplotypeScore=39.8009;MLEAC=1;MLEAF=0.500;MQ=50.58;MQ0=0;MQRankSum=-7.985;QD=1.09;ReadPosRankSum=-8.500;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:501,119:621:99:707,0,5653 chrII 464259 . A T 8646.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=538;Dels=0.00;FS=2.718;HaplotypeScore=40.5547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.988;QD=16.07;ReadPosRankSum=2.413;SB=-5.378e+03 GT:AD:DP:GQ:PL 1/1:2,534:537:99:8646,907,0 chrII 464478 . G A 5166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.855;DP=233;Dels=0.00;FS=4.697;HaplotypeScore=20.1620;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.855;QD=22.17;ReadPosRankSum=-0.870;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5166,555,0 chrII 464655 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.23;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3218,342,0 chrII 464667 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.84;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3222,339,0 chrII 464940 . G T 5622.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.3145;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.10;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5622,592,0 chrII 465103 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.17;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4276,451,0 chrII 465156 . T C 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=211;Dels=0.00;FS=8.638;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.930;QD=23.06;ReadPosRankSum=2.391;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4865,517,0 chrII 465493 . C T 6538.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=13.1619;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.24;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6538,682,0 chrII 465618 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4200,459,0 chrII 465657 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4083,435,0 chrII 465694 . T C 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=6.043;HaplotypeScore=13.4849;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.978;QD=19.01;ReadPosRankSum=1.696;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:3706,414,0 chrII 465853 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.29;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3288,354,0 chrII 465979 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.88;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2173,222,0 chrII 466295 . A G 5338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=4.844;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.855;QD=22.06;ReadPosRankSum=1.703;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5338,600,0 chrII 466414 . A G 6473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=270;Dels=0.00;FS=10.847;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.535;QD=23.97;ReadPosRankSum=2.810;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:6473,723,0 chrII 466676 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.18;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4046,447,0 chrII 466718 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=4.095;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.450;QD=20.51;ReadPosRankSum=1.712;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3548,381,0 chrII 466724 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.27;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3510,369,0 chrII 466848 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.543;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.555;QD=24.47;ReadPosRankSum=1.665;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3817,408,0 chrII 466961 . T A 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.467;QD=17.17;ReadPosRankSum=1.677;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2196,246,0 chrII 466995 . T A 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=6.611;HaplotypeScore=9.8235;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.483;QD=18.06;ReadPosRankSum=2.314;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2652,279,0 chrII 467369 . G A 5958.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.14;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5958,616,0 chrII 467538 . C T 5295.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.2946;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.22;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5295,559,0 chrII 467580 . C T 5165.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5165,547,0 chrII 467631 . A G 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.997;QD=23.22;ReadPosRankSum=1.716;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:1,211:215:99:4992,535,0 chrII 467964 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.4206;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.69;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5425,580,0 chrII 468345 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.644;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.235;QD=24.29;ReadPosRankSum=1.689;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3960,420,0 chrII 468566 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4220,453,0 chrII 468804 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.468;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.494;QD=23.60;ReadPosRankSum=1.581;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3800,411,0 chrII 468870 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.1330;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.76;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4817,502,0 chrII 469086 . C T 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=3.517;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.970;QD=23.39;ReadPosRankSum=-0.887;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:4958,537,0 chrII 469119 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=6.620;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.200;QD=19.46;ReadPosRankSum=2.413;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:3970,441,0 chrII 469122 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.7609;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.60;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4117,456,0 chrII 469152 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.6686;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.84;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4148,436,0 chrII 469267 . A G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=189;Dels=0.00;FS=5.864;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.335;QD=24.01;ReadPosRankSum=2.920;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4537,487,0 chrII 469344 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.63;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3698,414,0 chrII 469374 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=25.36;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4134,436,0 chrII 469512 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.24;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2115,240,0 chrII 469575 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.72;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1883,201,0 chrII 469648 . C T 697 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.42;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:730,75,0 chrII 469663 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.96;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:962,105,0 chrII 469766 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.012;QD=25.21;ReadPosRankSum=2.391;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:2,82:84:99:2151,225,0 chrII 469816 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.04;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2662,276,0 chrII 470054 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=19.2510;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.74;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3434,372,0 chrII 470150 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4575,490,0 chrII 470377 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1004;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.15;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4678,502,0 chrII 470537 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.72;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4277,442,0 chrII 470582 . A T 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=3.115;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.356;QD=24.86;ReadPosRankSum=1.682;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5195,550,0 chrII 470609 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=203;Dels=0.00;FS=14.013;HaplotypeScore=16.2184;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.756;QD=22.81;ReadPosRankSum=3.408;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4631,516,0 chrII 470873 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=196;Dels=0.00;FS=2.986;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.437;QD=22.70;ReadPosRankSum=2.424;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4450,480,0 chrII 471002 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=187;Dels=0.00;FS=8.776;HaplotypeScore=14.1534;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.874;QD=21.71;ReadPosRankSum=3.413;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:4,181:187:99:4060,447,0 chrII 471446 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2441;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.05;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4584,481,0 chrII 471887 . C G 3075 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3108,339,0 chrII 472319 . A C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=4.353;HaplotypeScore=9.8567;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.350;QD=23.05;ReadPosRankSum=1.714;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4333,462,0 chrII 472718 . G A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.77;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4828,528,0 chrII 472731 . T A 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=194;Dels=0.00;FS=8.988;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-1.363;QD=22.41;ReadPosRankSum=3.343;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4347,451,0 chrII 472732 . C G 4271.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.13;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4271,451,0 chrII 472853 . T C 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.183;QD=23.36;ReadPosRankSum=1.699;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4882,531,0 chrII 473429 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.22;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3214,351,0 chrII 473605 . T G 2721 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2754,297,0 chrII 473668 . A C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.53;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3483,372,0 chrII 474179 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=25.64;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2315,237,0 chrII 474281 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.55;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3486,361,0 chrII 474348 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=156;Dels=0.00;FS=9.099;HaplotypeScore=10.4714;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.827;QD=20.53;ReadPosRankSum=2.385;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3236,342,0 chrII 475497 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.9793;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.73;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3637,387,0 chrII 475550 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.75;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4326,457,0 chrII 475721 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2721;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.73;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4723,513,0 chrII 475856 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=245;Dels=0.00;FS=6.707;HaplotypeScore=12.9256;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.025;QD=17.51;ReadPosRankSum=2.108;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:4289,471,0 chrII 475859 . A T 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=243;Dels=0.00;FS=13.583;HaplotypeScore=10.0870;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-1.847;QD=18.60;ReadPosRankSum=3.339;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:4520,472,0 chrII 475985 . C T 5504.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.84;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5504,571,0 chrII 475994 . G A 5426.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.11;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5426,568,0 chrII 476335 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.2373;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.69;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4617,475,0 chrII 476506 . T G 5114.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.25;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5114,547,0 chrII 476602 . T G 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=214;Dels=0.00;FS=2.472;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.109;QD=25.35;ReadPosRankSum=2.920;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:5424,577,0 chrII 476730 . C T 6431.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.09;SB=-3.498e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6431,676,0 chrII 476894 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.6770;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.63;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4088,427,0 chrII 476910 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.0952;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.70;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3473,375,0 chrII 476954 . C T 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=138;Dels=0.00;FS=4.740;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.429;QD=21.23;ReadPosRankSum=1.378;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2963,330,0 chrII 477171 . G C 3146 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.63;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3179,345,0 chrII 477246 . T G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.229;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.625;QD=18.98;ReadPosRankSum=1.675;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2367,255,0 chrII 477249 . T C 2312 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=19.27;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2345,255,0 chrII 477263 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=19.04;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2413,255,0 chrII 477343 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.019;DP=120;Dels=0.00;FS=5.016;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.294;QD=18.80;ReadPosRankSum=2.946;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2289,229,0 chrII 479201 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=28.15;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1863,195,0 chrII 479267 . C T 505 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=68.6221;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=10.74;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:57:538,57,0 chrII 479286 . A G 129.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=58;Dels=0.02;FS=5.006;HaplotypeScore=6.2316;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;MQRankSum=1.611;QD=2.23;ReadPosRankSum=0.334;SB=-4.581e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:21:162,21,0 chrII 479289 . G C 472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.2651;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=0.256;QD=7.61;ReadPosRankSum=-0.653;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:57:505,57,0 chrII 479318 . T A 1478 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.08;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1511,159,0 chrII 479376 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.98;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3204,345,0 chrII 479536 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1216;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.38;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3705,390,0 chrII 479625 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.695;QD=23.33;ReadPosRankSum=1.711;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3919,417,0 chrII 479684 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=25.36;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4286,456,0 chrII 479744 . G T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.91;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3993,435,0 chrII 479752 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.61;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3883,397,0 chrII 480069 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=22.91;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3437,357,0 chrII 480074 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.064;HaplotypeScore=5.6795;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=0.321;QD=20.06;ReadPosRankSum=1.711;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3270,348,0 chrII 480137 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=18.05;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3138,345,0 chrII 480143 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=18.28;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3141,333,0 chrII 480150 . T C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0216;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-1.419;QD=18.10;ReadPosRankSum=1.713;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3236,345,0 chrII 480237 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.58;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3392,357,0 chrII 480324 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7775;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.652;QD=22.16;ReadPosRankSum=1.687;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3435,369,0 chrII 480340 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.64;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3041,321,0 chrII 480674 . A G 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=109;Dels=0.00;FS=2.858;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=21.42;ReadPosRankSum=2.405;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2368,249,0 chrII 481140 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=154;Dels=0.00;FS=3.306;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.524;QD=23.03;ReadPosRankSum=1.709;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3547,375,0 chrII 481146 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.522;QD=23.62;ReadPosRankSum=1.685;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3449,363,0 chrII 481261 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.34;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3004,327,0 chrII 481293 . A C 3172 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.32;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3205,339,0 chrII 481477 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.430;QD=22.75;ReadPosRankSum=1.644;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3571,381,0 chrII 481661 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.72;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4067,424,0 chrII 481670 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.23;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4321,457,0 chrII 481711 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=185;Dels=0.00;FS=6.586;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.034;QD=23.52;ReadPosRankSum=2.423;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4351,460,0 chrII 481964 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.5489;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.81;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4231,459,0 chrII 482219 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3677,390,0 chrII 482984 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3557,396,0 chrII 483628 . A T 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=135;Dels=0.00;FS=9.226;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.319;QD=24.87;ReadPosRankSum=2.395;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3357,346,0 chrII 483785 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.08;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4334,460,0 chrII 483944 . A G 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.714;QD=25.86;ReadPosRankSum=1.714;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5094,547,0 chrII 484231 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.067;QD=22.77;ReadPosRankSum=-0.658;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2993,306,0 chrII 484506 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.67;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3067,315,0 chrII 484558 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.11;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2566,282,0 chrII 484574 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.62;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2519,258,0 chrII 484617 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.47;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2975,324,0 chrII 484651 . G C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.07;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3586,390,0 chrII 485107 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.5343;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.74;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4559,501,0 chrII 485249 . T G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.964;QD=20.47;ReadPosRankSum=1.712;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3624,402,0 chrII 485257 . T G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=186;Dels=0.00;FS=5.461;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.638;QD=20.03;ReadPosRankSum=2.962;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3725,405,0 chrII 485396 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.29;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3401,357,0 chrII 485585 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.12;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3000,318,0 chrII 485633 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.53;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3007,327,0 chrII 485764 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=7.383;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.759;QD=22.96;ReadPosRankSum=2.334;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2972,321,0 chrII 486404 . G C 2904 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.8698;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.69;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2937,312,0 chrII 486680 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.9362;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.22;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3576,375,0 chrII 486737 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=140;Dels=0.00;FS=8.530;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.704;QD=21.08;ReadPosRankSum=2.414;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:2984,318,0 chrII 486871 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.278;QD=23.25;ReadPosRankSum=1.647;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1916,207,0 chrII 486878 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.49;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1765,189,0 chrII 487454 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.9643;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.07;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2730,294,0 chrII 487661 . C G 6122.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.7326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.10;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6122,678,0 chrII 488565 . C A 2247 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.20;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2280,246,0 chrII 488579 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.228;QD=19.72;ReadPosRankSum=1.631;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2064,222,0 chrII 488707 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.10;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:797,84,0 chrII 488755 . C G 1011 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.06;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1044,111,0 chrII 488875 . T A 1074 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.20;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1107,114,0 chrII 488899 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.28;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1490,153,0 chrII 489223 . G A 5663.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.89;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5663,586,0 chrII 489238 . A G 5486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=253;Dels=0.00;FS=3.522;HaplotypeScore=4.3936;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.247;QD=21.68;ReadPosRankSum=1.718;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5486,583,0 chrII 489241 . A G 5379.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.78;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5379,571,0 chrII 489688 . G A 5610.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.83;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5610,604,0 chrII 489703 . T C 5515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.974;DP=268;Dels=0.00;FS=11.105;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.611;QD=20.58;ReadPosRankSum=2.936;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:3,263:268:99:5515,586,0 chrII 489712 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.29;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5193,553,0 chrII 489778 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.76;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4788,502,0 chrII 489805 . G A 6051.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.30;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6051,628,0 chrII 490264 . C T 8281.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=20.5290;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.50;SB=-4.933e+03 GT:AD:DP:GQ:PL 1/1:0,367:368:99:8281,877,0 chrII 490619 . A C 6492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=279;Dels=0.00;FS=3.267;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.526;QD=23.27;ReadPosRankSum=1.060;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:6492,678,0 chrII 491265 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=22.6701;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.21;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2957,309,0 chrII 492025 . A C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8166;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.55;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3904,414,0 chrII 495579 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3339,366,0 chrII 495627 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3603,370,0 chrII 498348 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.11;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4388,454,0 chrII 498404 . T A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.68;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4072,444,0 chrII 498500 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=3.844;HaplotypeScore=12.3224;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.385;QD=22.57;ReadPosRankSum=1.705;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2877,309,0 chrII 498575 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.620;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.111;QD=24.67;ReadPosRankSum=1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3577,381,0 chrII 498596 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.80;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3274,342,0 chrII 498623 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.54;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2905,300,0 chrII 498674 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.489;QD=20.69;ReadPosRankSum=1.653;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2785,300,0 chrII 498695 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.37;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2769,288,0 chrII 498697 . T C 2674 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.41;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2707,285,0 chrII 498782 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=5.423;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.540;QD=21.81;ReadPosRankSum=1.704;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2759,297,0 chrII 498905 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.51;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2478,258,0 chrII 498935 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.79;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1917,210,0 chrII 498959 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.16;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1318,141,0 chrII 499010 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.77;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1078,114,0 chrII 499037 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.95;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1262,132,0 chrII 499049 . T A 1187 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.58;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1220,126,0 chrII 499070 . A G 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=56;Dels=0.00;FS=2.598;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.383;QD=20.46;ReadPosRankSum=2.875;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1179,126,0 chrII 499194 . A C 794 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:827,90,0 chrII 499401 . A C 786 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.46;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:90:819,90,0 chrII 499454 . T C 499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.433;QD=20.79;ReadPosRankSum=1.589;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:57:532,57,0 chrII 499494 . G T 280 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.50;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:313,33,0 chrII 499621 . G T 1474 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.98;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1507,159,0 chrII 499780 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=6.025;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.418;QD=25.39;ReadPosRankSum=2.933;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2674,285,0 chrII 499937 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.013;QD=25.65;ReadPosRankSum=1.705;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3335,351,0 chrII 499985 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3279,345,0 chrII 500276 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.33;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3920,426,0 chrII 500498 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=2.919;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.146;QD=23.93;ReadPosRankSum=2.408;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4284,454,0 chrII 500795 . G T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.30;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4218,445,0 chrII 500843 . T A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6326;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.69;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3901,417,0 chrII 500915 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.13;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3995,432,0 chrII 500944 . C G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.72;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3585,375,0 chrII 500945 . A T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.09;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3585,378,0 chrII 501201 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.933;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.548;QD=24.11;ReadPosRankSum=1.677;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4533,481,0 chrII 501490 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.2253;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.636;QD=22.61;ReadPosRankSum=1.716;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4928,526,0 chrII 501537 . C G 2561 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=15.34;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:2594,282,0 chrII 501576 . A T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.89;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3495,369,0 chrII 501990 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.60;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4182,447,0 chrII 502058 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.44;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4302,454,0 chrII 502224 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.60;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3390,372,0 chrII 502292 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.99;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3387,354,0 chrII 502305 . A T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.99;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3252,342,0 chrII 502313 . G A 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.894;QD=19.56;ReadPosRankSum=-1.180;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3104,324,0 chrII 502627 . A G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.680;HaplotypeScore=9.8284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.422;QD=23.51;ReadPosRankSum=1.674;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2878,306,0 chrII 503196 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2141,225,0 chrII 503310 . G C 3088 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3121,327,0 chrII 503967 . A G 5286.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.0014;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.75;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5286,559,0 chrII 504587 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.53;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2809,297,0 chrII 504615 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.136;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.435;QD=24.79;ReadPosRankSum=1.699;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2661,282,0 chrII 504739 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.37;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3487,381,0 chrII 504741 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.64;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3536,381,0 chrII 504833 . T C 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.7764;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.208;QD=24.56;ReadPosRankSum=1.755;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:5330,573,0 chrII 505396 . T A 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=37.6312;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=1.709;QD=12.71;ReadPosRankSum=0.850;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:5,80:86:99:1126,117,0 chrII 505399 . A T 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.757;DP=80;Dels=0.04;FS=4.627;HaplotypeScore=59.2651;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=3.744;QD=11.50;ReadPosRankSum=1.687;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:14,62:77:99:953,102,0 chrII 505431 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.9749;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=6.94;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:51:463,51,0 chrII 505640 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.421;QD=23.48;ReadPosRankSum=1.693;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2123,231,0 chrII 505691 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.15;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2248,246,0 chrII 505856 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3116,333,0 chrII 506292 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.91;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2851,315,0 chrII 506342 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.98;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3126,327,0 chrII 506364 . G C 3007 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.87;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3040,324,0 chrII 506696 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3187,330,0 chrII 506915 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.25;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3863,408,0 chrII 507219 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.141;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.595;QD=24.51;ReadPosRankSum=1.698;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2509,264,0 chrII 507323 . A T 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=104;Dels=0.00;FS=5.675;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.524;QD=23.30;ReadPosRankSum=2.894;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2456,255,0 chrII 507473 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.655;QD=24.37;ReadPosRankSum=1.694;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2226,240,0 chrII 507533 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.99;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2010,222,0 chrII 507938 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.28;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2637,270,0 chrII 508130 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.572;QD=26.43;ReadPosRankSum=1.700;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2887,303,0 chrII 508226 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.16;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2775,288,0 chrII 508255 . A G 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.564;QD=23.51;ReadPosRankSum=1.693;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2149,228,0 chrII 508385 . T A 2710 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2743,306,0 chrII 508631 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.87;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2945,324,0 chrII 508712 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.613;QD=23.78;ReadPosRankSum=1.702;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2791,300,0 chrII 508784 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.93;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2713,297,0 chrII 508875 . C A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.84;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3925,429,0 chrII 508946 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.204;QD=23.65;ReadPosRankSum=1.656;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3249,351,0 chrII 509103 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.725;QD=23.44;ReadPosRankSum=1.658;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3305,351,0 chrII 509108 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=3.027;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.862;QD=21.54;ReadPosRankSum=2.398;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3157,348,0 chrII 509222 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.76;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4159,439,0 chrII 509321 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7934;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.90;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3236,354,0 chrII 509360 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.23;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3601,387,0 chrII 509396 . A T 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.819;QD=23.24;ReadPosRankSum=1.685;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3439,372,0 chrII 509507 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.38;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3081,324,0 chrII 509627 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.93;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3326,354,0 chrII 509717 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.53;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2865,312,0 chrII 509720 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.28;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2953,315,0 chrII 509885 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4499;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.46;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3498,358,0 chrII 510237 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.14;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3283,351,0 chrII 510412 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.348;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.567;QD=23.70;ReadPosRankSum=1.661;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3484,366,0 chrII 511946 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2896,306,0 chrII 512167 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.229;QD=24.06;ReadPosRankSum=1.710;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3874,414,0 chrII 512285 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.90;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4931,531,0 chrII 512345 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.4783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5001,520,0 chrII 512880 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=142;Dels=0.00;FS=4.929;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.361;QD=22.13;ReadPosRankSum=1.658;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3175,339,0 chrII 512993 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.70;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2725,285,0 chrII 513202 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3547,381,0 chrII 513451 . G T 4783.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4783,505,0 chrII 513591 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2784,291,0 chrII 513601 . A C 2749 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.48;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2782,303,0 chrII 513777 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.085;QD=25.62;ReadPosRankSum=1.694;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2364,252,0 chrII 513994 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2209,237,0 chrII 514077 . T C 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.174;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.877;QD=21.84;ReadPosRankSum=1.604;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1802,198,0 chrII 514089 . T A 2072 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.55;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2105,219,0 chrII 514468 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2400,255,0 chrII 514806 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2944,303,0 chrII 514842 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.45;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3539,384,0 chrII 514935 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.68;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3955,409,0 chrII 515050 . T G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.494;QD=23.72;ReadPosRankSum=1.659;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4530,484,0 chrII 515130 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=170;Dels=0.00;FS=9.112;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.895;QD=23.36;ReadPosRankSum=3.387;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3971,423,0 chrII 515157 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=24.96;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4668,487,0 chrII 515211 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.3586;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.76;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3992,438,0 chrII 515316 . C G 3085 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.19;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3118,333,0 chrII 515369 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2561;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.678;QD=22.40;ReadPosRankSum=1.705;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2968,315,0 chrII 515762 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8407;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.94;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3899,406,0 chrII 515871 . G A 3469.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=20.53;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3469,375,0 chrII 515876 . C T 3374.01 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=21.22;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3374,363,0 chrII 515878 . C A 3225.28 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=20.28;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3258,351,0 chrII 515879 . A G 3215.99 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=20.10;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3249,351,0 chrII 515936 . A C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;DP=191;Dels=0.00;FS=8.430;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.836;QD=19.35;ReadPosRankSum=3.396;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:3695,399,0 chrII 515987 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.2904;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.13;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3173,333,0 chrII 515996 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.024;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.410;QD=21.09;ReadPosRankSum=2.415;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3006,333,0 chrII 516343 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=198;Dels=0.00;FS=14.930;HaplotypeScore=4.8488;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.862;QD=20.87;ReadPosRankSum=2.964;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4133,453,0 chrII 516344 . A G 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=197;Dels=0.00;FS=10.090;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.315;QD=21.99;ReadPosRankSum=2.325;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4332,457,0 chrII 516924 . C T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.36;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3994,418,0 chrII 517153 . C G 2160 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.77;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2193,237,0 chrII 517160 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.16;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2109,225,0 chrII 517214 . C G 1876 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.17;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1909,207,0 chrII 517253 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.15;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1849,195,0 chrII 517283 . C A 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.08;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1459,153,0 chrII 517291 . A C 1340 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.42;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1373,150,0 chrII 517334 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=10.353;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.672;QD=21.62;ReadPosRankSum=2.341;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1503,162,0 chrII 517410 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.61;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1589,174,0 chrII 517470 . A G 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=5.295;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.236;QD=20.54;ReadPosRankSum=1.693;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1861,201,0 chrII 517497 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.990;QD=19.80;ReadPosRankSum=1.701;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2251,243,0 chrII 517631 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.39;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3428,366,0 chrII 517869 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5087;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.91;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3736,399,0 chrII 518106 . T A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4294,456,0 chrII 519060 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3886,409,0 chrII 519317 . A G 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.413;QD=23.07;ReadPosRankSum=1.717;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5283,565,0 chrII 519618 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.52;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3951,432,0 chrII 519668 . A C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.71;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3533,375,0 chrII 519873 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=131;Dels=0.00;FS=6.043;HaplotypeScore=10.6035;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.457;QD=22.05;ReadPosRankSum=2.945;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:3,125:131:99:2922,318,0 chrII 519924 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.45;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4108,424,0 chrII 520147 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.948;QD=24.16;ReadPosRankSum=-0.359;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3841,389,0 chrII 520340 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.96;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4343,465,0 chrII 520452 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.84;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3814,414,0 chrII 520564 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.98;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2630,279,0 chrII 520611 . T C 2982 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.94;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3015,318,0 chrII 520641 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.18;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3049,330,0 chrII 520673 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.68;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2237,237,0 chrII 520674 . T C 2284 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.04;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2317,243,0 chrII 521133 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3226,348,0 chrII 521574 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.59;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2947,309,0 chrII 521576 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.08;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3014,309,0 chrII 521631 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.72;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2965,318,0 chrII 521820 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.6555;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.31;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3357,354,0 chrII 522636 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.51;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2596,273,0 chrII 522687 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9600;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.85;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2097,228,0 chrII 522696 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.139;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.656;QD=18.39;ReadPosRankSum=1.665;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1946,213,0 chrII 522774 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.04;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2726,300,0 chrII 522849 . C A 2284 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.31;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2317,240,0 chrII 522921 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=98;Dels=0.00;FS=6.431;HaplotypeScore=7.1269;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.188;QD=24.85;ReadPosRankSum=2.349;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2468,261,0 chrII 523127 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=131;Dels=0.00;FS=8.258;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.254;QD=23.37;ReadPosRankSum=2.411;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,124:131:99:3094,327,0 chrII 523217 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.18;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3802,405,0 chrII 523386 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3077,321,0 chrII 523695 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6891;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.88;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4230,436,0 chrII 523878 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.572;DP=225;Dels=0.00;FS=18.335;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.060;QD=23.18;ReadPosRankSum=3.761;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:5,218:225:99:5215,532,0 chrII 523893 . C A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.54;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4802,525,0 chrII 523926 . G C 3984.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.72;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3984,435,0 chrII 523940 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.44;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3849,420,0 chrII 524097 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.32;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4174,444,0 chrII 524448 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.953;QD=23.44;ReadPosRankSum=1.617;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2846,303,0 chrII 524475 . A G 2583 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.57;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2616,273,0 chrII 524592 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2756,285,0 chrII 524659 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.70;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2404,249,0 chrII 524751 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=28.03;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2808,285,0 chrII 524916 . T A 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=111;Dels=0.00;FS=3.032;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.499;QD=23.76;ReadPosRankSum=2.405;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2670,279,0 chrII 525483 . T A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.0736;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.94;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4208,450,0 chrII 525492 . T A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.81;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4101,432,0 chrII 525674 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.15;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2913,306,0 chrII 526374 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=127;Dels=0.00;FS=6.710;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.108;QD=23.74;ReadPosRankSum=2.410;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:3048,327,0 chrII 526512 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.79;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2824,309,0 chrII 526527 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=5.518;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.030;QD=20.63;ReadPosRankSum=1.702;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2385,249,0 chrII 526594 . A G 2631 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.68;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2664,285,0 chrII 526612 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.22;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3158,333,0 chrII 526673 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=22.00;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2541,267,0 chrII 526690 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=20.92;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2167,228,0 chrII 526922 . C A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.63;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3281,360,0 chrII 527412 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=2.941;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.797;QD=22.55;ReadPosRankSum=2.426;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4713,505,0 chrII 527451 . A C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2281;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.41;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3618,384,0 chrII 527493 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.58;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3017,324,0 chrII 527516 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.91;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2699,285,0 chrII 527518 . G A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=0.276;QD=18.35;ReadPosRankSum=0.502;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:2620,288,0 chrII 527528 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.5331;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.131;QD=17.04;ReadPosRankSum=1.708;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2555,282,0 chrII 527601 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.81;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3752,396,0 chrII 528069 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3159,339,0 chrII 528108 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=4.881;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.693;QD=19.43;ReadPosRankSum=1.710;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3161,345,0 chrII 528511 . C G 3120 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.77;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3153,348,0 chrII 528775 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=15.31;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2054,219,0 chrII 528793 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=16.11;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2111,225,0 chrII 529081 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7062;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.70;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3022,333,0 chrII 529129 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.38;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3852,414,0 chrII 529298 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.30;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3766,408,0 chrII 529327 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.06;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3935,409,0 chrII 529459 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.89;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3297,345,0 chrII 529507 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.0428;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.90;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3609,387,0 chrII 529552 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.49;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3671,385,0 chrII 529840 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.49;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3771,391,0 chrII 529864 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.30;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3658,379,0 chrII 530040 . C G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.96;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3651,393,0 chrII 530080 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.67;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3045,321,0 chrII 530098 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.51;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2556,264,0 chrII 530153 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.5968;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.179;QD=22.79;ReadPosRankSum=1.684;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3305,351,0 chrII 530473 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.04;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2064,222,0 chrII 530521 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.943;QD=23.18;ReadPosRankSum=1.644;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1864,204,0 chrII 531175 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=129;Dels=0.01;FS=2.583;HaplotypeScore=10.1109;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.373;QD=19.33;ReadPosRankSum=2.818;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2527,276,0 chrII 531205 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.80;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2429,261,0 chrII 531256 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.38;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3483,381,0 chrII 531481 . A T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.44;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3387,354,0 chrII 531496 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.789;QD=22.64;ReadPosRankSum=1.661;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3328,357,0 chrII 531664 . C A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.17;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3916,406,0 chrII 532114 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=3.468;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.433;QD=22.29;ReadPosRankSum=1.674;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2730,291,0 chrII 532216 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.90;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3186,336,0 chrII 532452 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=24.87;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3191,336,0 chrII 532473 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.06;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2724,297,0 chrII 532597 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.123;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-1.229;QD=22.04;ReadPosRankSum=1.703;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2612,279,0 chrII 532609 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=-1.389;QD=21.38;ReadPosRankSum=1.703;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2620,282,0 chrII 532643 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=17.17;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1973,210,0 chrII 532654 . G A 1617 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=15.11;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1650,180,0 chrII 532658 . A G 1427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;MQRankSum=-0.982;QD=14.71;ReadPosRankSum=1.696;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1460,159,0 chrII 532659 . A G 1453 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=14.53;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1486,162,0 chrII 532705 . A T 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=7.941;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=1.375;QD=19.51;ReadPosRankSum=2.408;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2355,243,0 chrII 532782 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=25.43;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4043,418,0 chrII 532827 . T G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.114;QD=24.21;ReadPosRankSum=1.709;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3704,399,0 chrII 532850 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=21.20;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3064,330,0 chrII 532864 . A C 2724 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.88;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2757,303,0 chrII 532899 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.900;HaplotypeScore=5.7204;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=1.014;QD=18.68;ReadPosRankSum=1.629;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2573,276,0 chrII 532929 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.82;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2608,273,0 chrII 533002 . A G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.504;QD=18.80;ReadPosRankSum=2.397;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2646,282,0 chrII 533005 . C G 2641 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.42;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2674,288,0 chrII 533095 . A C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=82;Dels=0.01;FS=2.720;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.476;QD=21.13;ReadPosRankSum=2.389;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1766,189,0 chrII 533102 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.62;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1662,180,0 chrII 533146 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=71.5733;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=19.10;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1504,156,0 chrII 533246 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.45;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2009,213,0 chrII 533310 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.64;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2719,288,0 chrII 533540 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.44;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4102,447,0 chrII 533635 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.561;QD=22.59;ReadPosRankSum=1.657;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3173,345,0 chrII 533657 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.44;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3220,348,0 chrII 533723 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.14;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2691,279,0 chrII 533727 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.984;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.044;QD=19.39;ReadPosRankSum=2.221;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2747,297,0 chrII 533745 . T A 2332 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=18.22;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2365,252,0 chrII 533760 . T A 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=138;Dels=0.00;FS=8.685;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.390;QD=16.90;ReadPosRankSum=3.395;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2365,246,0 chrII 534637 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.43;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3432,360,0 chrII 534745 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=6.135;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.919;QD=18.97;ReadPosRankSum=1.702;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2234,249,0 chrII 534922 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3507;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.289;QD=23.90;ReadPosRankSum=2.343;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2781,294,0 chrII 535096 . A T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.33;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3648,381,0 chrII 535193 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.18;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2450,255,0 chrII 535517 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.25;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3009,315,0 chrII 535535 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.86;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2613,279,0 chrII 535549 . A G 2339 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.66;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2372,252,0 chrII 535604 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.09;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2142,222,0 chrII 535736 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=5.679;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.272;QD=25.70;ReadPosRankSum=1.667;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4112,433,0 chrII 535775 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0861;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=25.20;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3730,396,0 chrII 535883 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.5706;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.37;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4921,508,0 chrII 535991 . C G 4001.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.06;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4001,441,0 chrII 535995 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.67;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3824,397,0 chrII 536426 . C A 2639 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.21;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2672,279,0 chrII 536637 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.06;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3828,423,0 chrII 536661 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.06;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3551,393,0 chrII 536700 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.96;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3690,393,0 chrII 536751 . T C 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=213;Dels=0.00;FS=6.165;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.847;QD=23.56;ReadPosRankSum=2.403;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5018,540,0 chrII 536808 . T A 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=3.902;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.607;QD=23.11;ReadPosRankSum=1.643;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4484,474,0 chrII 536917 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8070;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.181;QD=25.23;ReadPosRankSum=-0.121;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4340,451,0 chrII 537174 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=23.98;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2982,312,0 chrII 537210 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=23.66;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2943,303,0 chrII 537264 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=26.00;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2607,270,0 chrII 537282 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=23.04;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2245,234,0 chrII 537351 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5272;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=15.72;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1401,144,0 chrII 537535 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.7147;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=24.94;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:3126,327,0 chrII 537796 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=6.500;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.466;QD=23.82;ReadPosRankSum=2.330;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2486,267,0 chrII 537821 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=20.39;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2194,225,0 chrII 537829 . T C 1913 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=18.75;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1946,216,0 chrII 537888 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.43;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2478,258,0 chrII 537962 . T A 2542 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.54;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2575,276,0 chrII 538014 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=20.69;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2454,261,0 chrII 538023 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.965;QD=19.60;ReadPosRankSum=1.675;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2444,267,0 chrII 538047 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=16.97;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2035,231,0 chrII 538048 . A G 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-1.556;QD=18.04;ReadPosRankSum=1.703;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2162,234,0 chrII 538427 . A C 2361 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.01;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2394,255,0 chrII 538428 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.24;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2543,270,0 chrII 538483 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.46;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2322,249,0 chrII 538507 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.96;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2674,291,0 chrII 538836 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.52;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2688,297,0 chrII 538837 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.039;QD=19.50;ReadPosRankSum=1.655;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2705,297,0 chrII 538897 . A T 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=2.894;HaplotypeScore=10.3842;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.830;QD=18.67;ReadPosRankSum=2.377;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2553,285,0 chrII 538919 . A C 2496 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.81;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2529,267,0 chrII 538926 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.43;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2546,273,0 chrII 538968 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.89;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2686,279,0 chrII 538997 . T C 2386 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.50;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2419,264,0 chrII 539022 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.77;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2471,276,0 chrII 539105 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.89;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2273,243,0 chrII 539253 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.11;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1572,177,0 chrII 539637 . T C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=17.346;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.986;QD=23.45;ReadPosRankSum=2.389;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2894,303,0 chrII 539810 . A T 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.94;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1269,132,0 chrII 539825 . G T 1529 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.84;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1562,165,0 chrII 539861 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8635;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.08;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1910,201,0 chrII 539944 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=25.02;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3086,324,0 chrII 540296 . G A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.29;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4983,517,0 chrII 540838 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8105;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=24.50;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4533,481,0 chrII 541093 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=9.35;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:93:912,93,0 chrII 541103 . A G 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=2.974;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;MQRankSum=-0.843;QD=9.78;ReadPosRankSum=2.398;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:962,102,0 chrII 541108 . A T 1043 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;QD=11.46;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1076,111,0 chrII 541139 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=15.20;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1416,144,0 chrII 541156 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=17.59;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1581,168,0 chrII 541186 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=21.47;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1944,210,0 chrII 541386 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=22.42;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1468,153,0 chrII 541425 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;MQRankSum=-0.674;QD=20.42;ReadPosRankSum=1.684;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1503,162,0 chrII 541493 . C T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.091;QD=0.34;ReadPosRankSum=-1.733;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,37:38:6:44,6,0 chrII 541494 . A G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.277;QD=0.34;ReadPosRankSum=-1.733;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,37:38:6:44,6,0 chrII 541521 . A T 678 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.83;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:75:711,75,0 chrII 541524 . A G 648 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.39;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:72:681,72,0 chrII 541574 . T A 471 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=115.1415;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.548;QD=10.95;ReadPosRankSum=0.548;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:2,41:43:36:504,36,0 chrII 541579 . T G 520 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=41.6869;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;MQRankSum=-1.260;QD=11.82;ReadPosRankSum=0.079;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:60:553,60,0 chrII 541582 . A G 549 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9663;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;MQRankSum=0.709;QD=12.48;ReadPosRankSum=-0.945;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:63:582,63,0 chrII 541588 . C G 594 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=13.20;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:69:627,69,0 chrII 542283 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.522;QD=23.39;ReadPosRankSum=1.650;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3004,321,0 chrII 542402 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=26.14;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3117,321,0 chrII 542430 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=24.41;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2498,258,0 chrII 542433 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.601;QD=24.11;ReadPosRankSum=1.697;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2396,255,0 chrII 542481 . A C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.985;QD=19.75;ReadPosRankSum=1.698;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2067,219,0 chrII 542486 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.30;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2063,219,0 chrII 542535 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.57;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2625,285,0 chrII 542592 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.98;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2692,291,0 chrII 542664 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=25.91;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2546,264,0 chrII 542895 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.95;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3099,321,0 chrII 543006 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.69;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3580,378,0 chrII 543054 . T C 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=133;Dels=0.00;FS=5.928;HaplotypeScore=10.1585;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=1.573;QD=19.59;ReadPosRankSum=2.687;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2639,267,0 chrII 543063 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.068;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.532;QD=19.99;ReadPosRankSum=-0.641;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2592,263,0 chrII 543092 . A G 2894 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.82;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2927,309,0 chrII 543129 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.09;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3972,409,0 chrII 543246 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.974;QD=23.13;ReadPosRankSum=1.712;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3955,432,0 chrII 543264 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.6637;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.19;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4128,430,0 chrII 543299 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.51;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3737,399,0 chrII 543363 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.42;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3396,369,0 chrII 543393 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=2.839;HaplotypeScore=6.4108;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.597;QD=22.01;ReadPosRankSum=2.378;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3092,330,0 chrII 543495 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.48;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3109,342,0 chrII 543588 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.051;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.631;QD=23.88;ReadPosRankSum=1.700;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2612,279,0 chrII 543997 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=19.6380;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.92;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3782,394,0 chrII 544134 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.02;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4503,481,0 chrII 544218 . C G 3752.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.74;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3752,414,0 chrII 544278 . C G 3844.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5225;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=23.16;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3844,426,0 chrII 544298 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=21.49;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3718,384,0 chrII 544299 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=21.31;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3644,384,0 chrII 544459 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=21.84;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3025,321,0 chrII 544475 . T A 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-0.614;QD=22.54;ReadPosRankSum=1.678;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2895,315,0 chrII 544499 . C A 2318 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.87;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2351,252,0 chrII 544514 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.021;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=0.163;QD=20.57;ReadPosRankSum=1.699;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2213,240,0 chrII 544654 . C A 1897 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.13;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1930,201,0 chrII 544676 . T A 1471 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.43;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1504,162,0 chrII 544692 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.87;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1563,168,0 chrII 544742 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.60;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2516,258,0 chrII 544773 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.29;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2537,261,0 chrII 544991 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.47;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3989,429,0 chrII 545201 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3668,384,0 chrII 545438 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.97;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4267,456,0 chrII 545558 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3970,412,0 chrII 545985 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=22.54;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2377,246,0 chrII 545996 . A C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=0.167;QD=20.49;ReadPosRankSum=1.699;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2164,234,0 chrII 546010 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.22;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2325,243,0 chrII 546015 . A C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=2.992;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.995;QD=19.63;ReadPosRankSum=2.386;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2291,246,0 chrII 546062 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.87;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1841,195,0 chrII 546118 . C A 1710 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.12;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1743,186,0 chrII 546124 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=75.2098;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=18.43;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1710,183,0 chrII 546140 . A T 1711 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=18.60;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1744,183,0 chrII 546224 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=2.952;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.615;QD=22.74;ReadPosRankSum=2.357;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2443,261,0 chrII 546316 . A G 2927 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.39;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2960,315,0 chrII 546732 . C G 4953.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.05;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4953,549,0 chrII 546739 . G A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.77;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4902,534,0 chrII 546889 . T A 6524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=250;Dels=0.00;FS=3.045;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.734;QD=26.10;ReadPosRankSum=1.690;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:6524,685,0 chrII 546933 . A G 5873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.087;QD=25.10;ReadPosRankSum=1.702;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,230:234:99:5873,625,0 chrII 547137 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=2.995;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.352;QD=23.74;ReadPosRankSum=2.408;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4250,465,0 chrII 547559 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.60;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4889,502,0 chrII 547596 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.72;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4170,430,0 chrII 547617 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.75;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3221,342,0 chrII 547633 . G T 2687 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=15.99;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2720,294,0 chrII 547636 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=15.66;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2695,288,0 chrII 547729 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.73;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4058,429,0 chrII 547945 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.96;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2260,237,0 chrII 547966 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.125;DP=108;Dels=0.00;FS=12.984;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.622;QD=22.03;ReadPosRankSum=3.258;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:4,102:108:99:2412,255,0 chrII 548060 . A C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=7.549;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=23.67;ReadPosRankSum=2.397;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3338,354,0 chrII 548176 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.55;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2292,237,0 chrII 548249 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.52;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2510,264,0 chrII 548425 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.84;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1758,189,0 chrII 548443 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.102;QD=21.29;ReadPosRankSum=1.651;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1843,198,0 chrII 549229 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.38;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2393,249,0 chrII 549466 . C A 3033 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.98;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3066,315,0 chrII 549489 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.93;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2627,273,0 chrII 549503 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.964;HaplotypeScore=7.9396;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.370;QD=18.24;ReadPosRankSum=2.364;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2641,279,0 chrII 549535 . A C 3360.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.65;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3360,360,0 chrII 549576 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=156;Dels=0.00;FS=2.563;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.375;QD=21.98;ReadPosRankSum=2.954;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:3,150:156:99:3429,360,0 chrII 549769 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.61;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3220,342,0 chrII 550124 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.634;QD=22.96;ReadPosRankSum=1.715;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4706,507,0 chrII 550133 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=23.19;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4615,478,0 chrII 550142 . T C 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=199;Dels=0.00;FS=6.727;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.697;QD=20.49;ReadPosRankSum=2.363;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4078,447,0 chrII 550241 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.32;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4203,436,0 chrII 550268 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.9651;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.06;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4211,436,0 chrII 550330 . C A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.20;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4018,421,0 chrII 550736 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=12.6155;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.23;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3531,384,0 chrII 550847 . A C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3769,402,0 chrII 550907 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3054,321,0 chrII 551016 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.41;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3490,366,0 chrII 551109 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=131;Dels=0.00;FS=7.942;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.906;QD=23.13;ReadPosRankSum=2.412;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:3063,327,0 chrII 551284 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.655;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.294;QD=20.91;ReadPosRankSum=1.692;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3681,402,0 chrII 551302 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.542;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.241;QD=20.36;ReadPosRankSum=1.690;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3400,372,0 chrII 551347 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.38;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3293,348,0 chrII 551377 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.623;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.481;QD=22.05;ReadPosRankSum=1.641;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3395,375,0 chrII 551397 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.435;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.108;QD=23.09;ReadPosRankSum=1.711;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3741,391,0 chrII 551704 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2518,258,0 chrII 552046 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1766,186,0 chrII 552407 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.752;DP=131;Dels=0.00;FS=19.819;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.031;QD=21.79;ReadPosRankSum=3.642;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:5,124:131:99:2887,312,0 chrII 552555 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.99;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3358,346,0 chrII 552684 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.80;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3534,361,0 chrII 552727 . T G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.49;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3551,378,0 chrII 552889 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4108,435,0 chrII 553211 . T G 2201 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.38;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2234,246,0 chrII 553227 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.98;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2387,249,0 chrII 553255 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.21;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2346,249,0 chrII 553403 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.70;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1554,165,0 chrII 553663 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2323,243,0 chrII 553726 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.26;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3865,400,0 chrII 553780 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.65;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3068,327,0 chrII 553783 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=8.510;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.001;QD=19.37;ReadPosRankSum=2.385;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2978,324,0 chrII 553854 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=192;Dels=0.00;FS=2.754;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.418;QD=23.07;ReadPosRankSum=2.372;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4430,469,0 chrII 554441 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.835;QD=25.17;ReadPosRankSum=1.639;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2852,300,0 chrII 554537 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.4559;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3264,342,0 chrII 554599 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.560;QD=25.24;ReadPosRankSum=1.679;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3281,360,0 chrII 554815 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=168;Dels=0.00;FS=6.097;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.341;QD=24.79;ReadPosRankSum=2.910;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:4164,453,0 chrII 554862 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.43;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4422,474,0 chrII 555375 . A C 1168 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=11.80;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1201,132,0 chrII 555518 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=25.82;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3383,349,0 chrII 555562 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=21.87;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3302,343,0 chrII 555569 . A G 2934 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=127.3817;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.82;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2967,327,0 chrII 555623 . C G 2561 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=17.66;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2594,276,0 chrII 555624 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.25;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2569,273,0 chrII 555819 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.68;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3339,351,0 chrII 555881 . G T 2669 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.41;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2702,279,0 chrII 555964 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.93;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3128,345,0 chrII 556110 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.57;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3273,360,0 chrII 556201 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=70.5778;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.577;QD=21.53;ReadPosRankSum=1.697;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2164,237,0 chrII 556272 . T C 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=5.241;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.311;QD=21.29;ReadPosRankSum=1.673;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2566,273,0 chrII 556275 . A G 2343 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.55;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2376,255,0 chrII 556310 . C A 1915 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.28;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1948,207,0 chrII 556539 . T C 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.084;QD=24.04;ReadPosRankSum=1.620;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3014,333,0 chrII 556857 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.81;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3209,342,0 chrII 556887 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.43;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3009,333,0 chrII 557225 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.96;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3290,345,0 chrII 557246 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=2.889;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.024;QD=20.13;ReadPosRankSum=2.419;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3301,363,0 chrII 557352 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.58;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3961,412,0 chrII 557651 . T A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.23;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3562,364,0 chrII 557658 . A G 3184 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.96;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3217,345,0 chrII 557763 . G C 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3312,360,0 chrII 558378 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=21.08;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1361,147,0 chrII 558380 . G C 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6227;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=20.11;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1280,144,0 chrII 558397 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=2.6996;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=16.64;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1098,120,0 chrII 558401 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=17.63;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1179,129,0 chrII 558471 . A G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=4.523;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.172;QD=22.93;ReadPosRankSum=1.630;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1615,171,0 chrII 558499 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=86;Dels=0.00;FS=5.616;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.847;QD=21.10;ReadPosRankSum=2.824;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1848,201,0 chrII 558504 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.77;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1985,207,0 chrII 558576 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=109.6793;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=18.45;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2560,273,0 chrII 558597 . A C 2404 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.35;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2437,270,0 chrII 558866 . C G 4001.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.73;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4001,418,0 chrII 558881 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.43;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4104,430,0 chrII 559000 . C T 4444.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.9759;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.84;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4444,460,0 chrII 559131 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.594;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.521;QD=23.71;ReadPosRankSum=1.713;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4362,466,0 chrII 559186 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.5585;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.98;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3429,366,0 chrII 559359 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.11;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2862,303,0 chrII 559378 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6291;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.33;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2696,288,0 chrII 559515 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.587;QD=24.65;ReadPosRankSum=1.703;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2991,324,0 chrII 559650 . C T 1571 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1604,165,0 chrII 559695 . A G 1149 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1182,126,0 chrII 559732 . T C 556 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.37;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,31:32:63:589,63,0 chrII 559922 . C G 1393 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=26.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1426,150,0 chrII 559960 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.75;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1372,147,0 chrII 560022 . C A 2652 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.10;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2685,285,0 chrII 560167 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8800;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.43;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3494,369,0 chrII 560494 . G C 4493.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4493,480,0 chrII 560987 . A G 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=191;Dels=0.00;FS=2.885;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-1.865;QD=22.50;ReadPosRankSum=2.424;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4297,465,0 chrII 561263 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=15.2216;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=10.80;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:71:87:800,87,0 chrII 561291 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5011;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.61;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1261,135,0 chrII 561879 . G A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.0724;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.31;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4837,496,0 chrII 562452 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.42;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4042,432,0 chrII 562617 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.900;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.599;QD=24.66;ReadPosRankSum=1.711;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3995,424,0 chrII 562763 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.00;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2265,240,0 chrII 562894 . A G 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.878;QD=21.66;ReadPosRankSum=2.330;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:2,39:41:96:921,96,0 chrII 562919 . A G 545 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.026;QD=19.46;ReadPosRankSum=2.275;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:2,26:28:63:578,63,0 chrII 562936 . C T 421 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=20.05;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:454,48,0 chrII 562937 . C T 378 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=18.00;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:411,45,0 chrII 562976 . A G 187.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=13.36;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:220,24,0 chrII 563008 . G T 79.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=8.83;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:112,12,0 chrII 563013 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=2.97;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:55,6,0 chrII 563135 . G A 51.97 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=44.2848;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=0.91;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,57:57:9:84,9,0 chrII 563175 . A T 803 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:87:836,87,0 chrII 563201 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=13.07;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:974,105,0 chrII 563203 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=13.47;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1003,105,0 chrII 563317 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.426;QD=23.40;ReadPosRankSum=1.671;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2677,291,0 chrII 563527 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.2971;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.230;QD=23.63;ReadPosRankSum=1.706;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3152,336,0 chrII 563635 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.270;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.369;QD=19.47;ReadPosRankSum=1.710;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3070,324,0 chrII 563644 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.43;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2772,309,0 chrII 563695 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1679;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.20;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3667,393,0 chrII 564041 . T G 7163.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=19.9502;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:7163,760,0 chrII 564286 . A G 6230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=31.7417;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.113;QD=22.49;ReadPosRankSum=1.694;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:1,273:277:99:6230,693,0 chrII 564550 . C G 2844 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2877,312,0 chrII 564636 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1351,153,0 chrII 564639 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1504,156,0 chrII 565153 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3665,405,0 chrII 565250 . G A 5459.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.93;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5459,568,0 chrII 565460 . G T 4616.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.38;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4616,478,0 chrII 565493 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9592;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.88;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4038,424,0 chrII 565566 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.41;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4101,444,0 chrII 565627 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.58;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4119,433,0 chrII 565711 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=137;Dels=0.00;FS=9.523;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.326;QD=20.92;ReadPosRankSum=2.874;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2899,318,0 chrII 565735 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.35;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2862,297,0 chrII 565750 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.474;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.241;QD=19.32;ReadPosRankSum=1.688;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3086,327,0 chrII 566056 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.64;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2076,225,0 chrII 566061 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.61;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2033,213,0 chrII 566217 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1674;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.43;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2728,291,0 chrII 566469 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.51;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3332,369,0 chrII 566478 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.23;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3623,393,0 chrII 566552 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.90;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4607,490,0 chrII 566670 . T A 2829 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=25.04;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2862,309,0 chrII 566827 . C A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.20;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3503,372,0 chrII 566838 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=5.029;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.533;QD=22.81;ReadPosRankSum=1.665;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3581,381,0 chrII 566995 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=2.875;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.056;QD=23.84;ReadPosRankSum=2.406;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4100,433,0 chrII 567265 . C A 2683 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2716,297,0 chrII 567339 . G T 2966 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2999,309,0 chrII 567480 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.28;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2435,252,0 chrII 567602 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.37;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2113,225,0 chrII 567651 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.67;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1875,195,0 chrII 567658 . T C 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=89;Dels=0.00;FS=2.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.714;QD=18.88;ReadPosRankSum=2.338;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1713,183,0 chrII 567682 . G C 1453 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.12;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1486,156,0 chrII 567697 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.605;QD=18.07;ReadPosRankSum=1.690;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1533,171,0 chrII 568357 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.16;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2650,279,0 chrII 568406 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2839,309,0 chrII 568465 . G T 2703 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2736,294,0 chrII 568676 . G C 2779 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.73;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2812,297,0 chrII 568762 . T G 2894 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.32;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2927,306,0 chrII 568819 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.148;QD=19.87;ReadPosRankSum=1.705;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2596,285,0 chrII 568820 . T G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=131;Dels=0.00;FS=6.401;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.410;QD=19.92;ReadPosRankSum=2.412;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2643,285,0 chrII 569064 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.35;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3596,378,0 chrII 569301 . T A 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.106;QD=21.76;ReadPosRankSum=1.669;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3612,384,0 chrII 569302 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.073;QD=22.14;ReadPosRankSum=1.711;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3653,387,0 chrII 569460 . C T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.97;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5297,570,0 chrII 569856 . T G 1838 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.84;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1871,204,0 chrII 569872 . G C 1735 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.51;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1768,186,0 chrII 570256 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.73;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2036,219,0 chrII 570264 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.445;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.330;QD=17.84;ReadPosRankSum=1.705;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2299,249,0 chrII 570267 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=17.62;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2341,258,0 chrII 570301 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.403;QD=19.44;ReadPosRankSum=1.685;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2891,309,0 chrII 570508 . G T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.25;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3315,351,0 chrII 570929 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.00;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4186,436,0 chrII 571034 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.958;QD=21.64;ReadPosRankSum=0.530;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3700,366,0 chrII 571050 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3528,369,0 chrII 571089 . C T 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.4139;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.482;QD=19.98;ReadPosRankSum=1.706;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2691,273,0 chrII 571218 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.81;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2633,285,0 chrII 571243 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.27;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2732,291,0 chrII 571349 . A G 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=13.7197;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.015;QD=9.22;ReadPosRankSum=2.751;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:3,73:78:81:752,81,0 chrII 571411 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.65;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2351,252,0 chrII 571612 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9179;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.97;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2444,267,0 chrII 571613 . T A 2498 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.91;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2531,267,0 chrII 571717 . T G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.246;QD=24.44;ReadPosRankSum=1.713;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4351,480,0 chrII 571870 . T G 3521.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3521,369,0 chrII 571949 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=4.616;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.472;QD=24.87;ReadPosRankSum=1.711;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4129,444,0 chrII 572114 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=23.26;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3103,330,0 chrII 572291 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.96;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2764,297,0 chrII 572340 . G T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7225;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.52;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3457,366,0 chrII 572944 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.175;QD=22.34;ReadPosRankSum=1.692;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1977,213,0 chrII 572996 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.63;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2273,237,0 chrII 573399 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.69;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3119,330,0 chrII 573446 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.24;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3136,327,0 chrII 573536 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=3.034;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.251;QD=20.69;ReadPosRankSum=2.357;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2764,294,0 chrII 573554 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.18;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2606,270,0 chrII 573669 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.87;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2286,246,0 chrII 573743 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.25;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2056,222,0 chrII 573792 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.94;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1708,180,0 chrII 573799 . T G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.956;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.559;QD=20.61;ReadPosRankSum=2.391;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1744,189,0 chrII 573826 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.36;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2049,219,0 chrII 573868 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.672;QD=19.83;ReadPosRankSum=1.697;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1996,210,0 chrII 573886 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.84;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1917,201,0 chrII 573907 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.05;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2052,216,0 chrII 574371 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=169;Dels=0.00;FS=6.369;HaplotypeScore=10.5205;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=2.420;QD=23.08;ReadPosRankSum=2.420;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3900,426,0 chrII 574593 . C A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.42;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4469,466,0 chrII 574678 . C T 5246.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.42;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5246,547,0 chrII 574683 . A G 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=229;Dels=0.00;FS=5.898;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.233;QD=22.39;ReadPosRankSum=2.952;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:5127,544,0 chrII 574755 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.45;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3771,391,0 chrII 574962 . G T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.20;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4768,502,0 chrII 574996 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4215,450,0 chrII 575422 . G A 4493.01 SnpCluster AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.9491;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=20.24;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4493,472,0 chrII 575423 . G A 4526.01 SnpCluster AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.0572;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.76;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4526,481,0 chrII 575427 . T A 4467.01 SnpCluster AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.4614;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.30;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4467,472,0 chrII 575460 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.3189;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.46;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4301,454,0 chrII 575523 . G A 6063.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.65;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6063,643,0 chrII 575685 . C G 4621.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.2694;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.43;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4621,507,0 chrII 575784 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.89;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3634,390,0 chrII 575877 . G C 3105 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=25.04;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3138,339,0 chrII 575949 . T C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=6.721;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.732;QD=20.81;ReadPosRankSum=1.658;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1989,213,0 chrII 576022 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=68.2714;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=15.84;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1791,195,0 chrII 576057 . A G 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=81;Dels=0.00;FS=5.336;HaplotypeScore=8.9791;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.665;QD=12.96;ReadPosRankSum=3.172;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1083,117,0 chrII 576135 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.52;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:974,102,0 chrII 576166 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.98;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1088,114,0 chrII 576434 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1438,159,0 chrII 576971 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.97;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4070,430,0 chrII 576997 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=176;Dels=0.00;FS=4.344;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.255;QD=23.06;ReadPosRankSum=3.220;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:4059,435,0 chrII 577418 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=172;Dels=0.00;FS=6.097;HaplotypeScore=18.9106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.065;QD=21.30;ReadPosRankSum=2.924;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3663,396,0 chrII 578174 . A C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3263,345,0 chrII 578954 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.138;QD=22.16;ReadPosRankSum=1.683;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1584,168,0 chrII 579032 . A T 1423 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.477;DP=69;Dels=0.00;FS=6.347;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=1.682;QD=20.62;ReadPosRankSum=1.080;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1456,159,0 chrII 579038 . A C 1480 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.713;QD=21.45;ReadPosRankSum=1.681;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1513,162,0 chrII 579042 . A G 1409 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-1.110;QD=20.13;ReadPosRankSum=2.380;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1442,156,0 chrII 579131 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.14;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1861,198,0 chrII 579201 . G C 2977 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.81;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3010,324,0 chrII 579408 . G T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.62;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3619,381,0 chrII 579501 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.05;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3536,393,0 chrII 579644 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.596;QD=20.07;ReadPosRankSum=2.395;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2743,288,0 chrII 579647 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=136;Dels=0.00;FS=9.152;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.985;QD=18.71;ReadPosRankSum=2.375;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,129:136:99:2578,288,0 chrII 579920 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.22;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3608,390,0 chrII 579936 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.47;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3542,384,0 chrII 579957 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.56;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3578,378,0 chrII 580057 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9270;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.30;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3679,399,0 chrII 580260 . G T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4136,438,0 chrII 580371 . C T 5868.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.1638;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.10;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5868,616,0 chrII 580507 . T C 6464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=3.255;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.299;QD=25.05;ReadPosRankSum=1.691;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:6464,682,0 chrII 580560 . A C 5957.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.65;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5957,634,0 chrII 580575 . T C 5777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=266;Dels=0.00;FS=3.026;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.794;QD=21.72;ReadPosRankSum=2.413;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:5777,616,0 chrII 580722 . A T 5756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=259;Dels=0.00;FS=6.558;HaplotypeScore=15.5552;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.782;QD=22.22;ReadPosRankSum=2.383;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:2,257:259:99:5756,627,0 chrII 580746 . C T 6512.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.85;SB=-3.861e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6512,673,0 chrII 580809 . A T 6538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=290;Dels=0.00;FS=3.257;HaplotypeScore=12.9139;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.195;QD=22.54;ReadPosRankSum=1.720;SB=-3.753e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:6538,694,0 chrII 580868 . T C 5856.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.2434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.33;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5856,622,0 chrII 580923 . A T 5495.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.0822;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.25;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5495,580,0 chrII 581091 . A C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=196;Dels=0.00;FS=3.456;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.519;QD=24.10;ReadPosRankSum=1.697;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4724,516,0 chrII 581181 . C A 4786.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4786,528,0 chrII 581216 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.0911;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.03;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4098,453,0 chrII 581322 . A G 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=189;Dels=0.00;FS=8.052;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.982;QD=24.13;ReadPosRankSum=3.414;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:4561,487,0 chrII 581355 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=26.54;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4352,460,0 chrII 581460 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=20.50;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2144,228,0 chrII 581465 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=20.13;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2167,234,0 chrII 581484 . G C 1741 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=17.41;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1774,204,0 chrII 581510 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=16.72;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1805,189,0 chrII 581511 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=15.91;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1719,189,0 chrII 581615 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.06;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1865,204,0 chrII 581695 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.10;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3404,369,0 chrII 581822 . G A 5809.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.1058;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.10;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5809,619,0 chrII 582285 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=165;Dels=0.00;FS=6.096;HaplotypeScore=15.0074;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-2.238;QD=21.78;ReadPosRankSum=2.897;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3593,396,0 chrII 582334 . T G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.905;QD=25.36;ReadPosRankSum=1.674;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4590,484,0 chrII 582375 . T A 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=207;Dels=0.00;FS=5.720;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-2.121;QD=24.68;ReadPosRankSum=2.888;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:5109,538,0 chrII 582406 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.05;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5099,541,0 chrII 582433 . G A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.6220;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.73;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:4909,505,0 chrII 582458 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.6988;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.84;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4286,454,0 chrII 582470 . A T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4086;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.27;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4053,427,0 chrII 582806 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4348,477,0 chrII 583100 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.01;FS=6.948;HaplotypeScore=26.8741;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.737;QD=22.36;ReadPosRankSum=2.335;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4338,465,0 chrII 583262 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.16;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3002,312,0 chrII 583267 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.10;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2840,300,0 chrII 583514 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=18.42;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1175,126,0 chrII 583576 . T A 1269 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=16.48;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1302,138,0 chrII 583825 . T G 5071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.228;QD=26.01;ReadPosRankSum=2.399;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:5071,544,0 chrII 583912 . G A 6469.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.1170;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.67;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6469,673,0 chrII 583984 . T C 5967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=251;Dels=0.00;FS=6.690;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.506;QD=23.77;ReadPosRankSum=2.361;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:5967,643,0 chrII 584397 . C T 5296.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.22;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5296,553,0 chrII 584634 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2903,297,0 chrII 584764 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.05;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1992,222,0 chrII 585012 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.76;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3441,369,0 chrII 585092 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.84;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3289,354,0 chrII 585569 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9136;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.22;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3960,426,0 chrII 585769 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.69;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3308,363,0 chrII 585814 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.27;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2952,318,0 chrII 586133 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.55;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2562,273,0 chrII 586221 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.19;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1992,207,0 chrII 586315 . G C 1493 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.03;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1526,162,0 chrII 586488 . A T 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6647;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.61;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1327,144,0 chrII 586853 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.699;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.416;QD=24.61;ReadPosRankSum=1.640;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3692,388,0 chrII 586961 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.72;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3825,420,0 chrII 586964 . A T 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-0.688;QD=18.96;ReadPosRankSum=1.628;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3773,414,0 chrII 587130 . G T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.15;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3446,358,0 chrII 587405 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.23;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3262,345,0 chrII 587432 . A T 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=3.134;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.146;QD=22.13;ReadPosRankSum=1.708;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3175,348,0 chrII 587830 . G C 2778 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.70;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2811,306,0 chrII 588089 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=4.055;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.302;QD=24.77;ReadPosRankSum=1.684;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3616,396,0 chrII 588182 . T C 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.087;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.942;QD=23.00;ReadPosRankSum=1.580;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2655,288,0 chrII 588326 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.95;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3205,339,0 chrII 588329 . G C 3000 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.11;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3033,333,0 chrII 588368 . A C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.798;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.065;QD=18.94;ReadPosRankSum=1.710;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3101,342,0 chrII 589145 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.51;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3814,397,0 chrII 589164 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.22;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3782,420,0 chrII 589235 . G T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.39;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3560,370,0 chrII 589394 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.14;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3645,399,0 chrII 589837 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.55;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3584,375,0 chrII 589871 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.73;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2617,288,0 chrII 589872 . G T 2673 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.10;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2706,288,0 chrII 589895 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.241;QD=20.87;ReadPosRankSum=1.678;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2683,288,0 chrII 589941 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.30;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3088,330,0 chrII 590112 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.088;DP=122;Dels=0.00;FS=6.579;HaplotypeScore=11.4378;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.823;QD=22.59;ReadPosRankSum=2.287;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2789,284,0 chrII 590242 . G T 2774 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2807,294,0 chrII 590654 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=148;Dels=0.00;FS=6.111;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.966;QD=22.82;ReadPosRankSum=2.883;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3377,363,0 chrII 590742 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4287,442,0 chrII 590853 . G A 5157.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.9518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5157,544,0 chrII 590898 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.47;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4765,502,0 chrII 590982 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=7.816;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.144;QD=21.28;ReadPosRankSum=2.374;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4171,450,0 chrII 591250 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.274;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.557;QD=24.02;ReadPosRankSum=1.645;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2916,309,0 chrII 591285 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.16;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1909,204,0 chrII 591323 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.07;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2202,225,0 chrII 591378 . C A 1868 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1901,207,0 chrII 591478 . C T 302 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:335,36,0 chrII 591710 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=25.38;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2190,234,0 chrII 591934 . G A 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360;DP=278;Dels=0.00;FS=108.893;HaplotypeScore=3.8340;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=97;MQRankSum=-6.567;QD=0.74;ReadPosRankSum=-1.888;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,108:278:99:235,0,1994 chrII 592177 . A G 2658 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.953;DP=312;Dels=0.00;FS=159.621;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=121;MQRankSum=3.465;QD=8.52;ReadPosRankSum=2.343;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:88,223:312:99:2691,123,0 chrII 592447 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=23.81;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3405,357,0 chrII 592495 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=4.236;HaplotypeScore=16.5494;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.256;QD=20.78;ReadPosRankSum=1.675;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2589,276,0 chrII 592600 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=23.86;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3412,375,0 chrII 592623 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=139;Dels=0.00;FS=14.264;HaplotypeScore=3.8414;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-0.964;QD=20.77;ReadPosRankSum=3.219;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2920,306,0 chrII 592634 . T A 2602 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.56;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2635,291,0 chrII 592643 . G C 2237 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.34;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2270,240,0 chrII 592744 . T A 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=6.484;HaplotypeScore=132.0013;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.449;QD=21.34;ReadPosRankSum=2.399;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3128,327,0 chrII 592815 . A T 3044 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.8563;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.99;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3077,324,0 chrII 592905 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.87;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3681,396,0 chrII 592938 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.21;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2684,282,0 chrII 592973 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.03;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1549,168,0 chrII 593091 . T C 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6457;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.07;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2020,228,0 chrII 593122 . C A 1589 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.07;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1622,171,0 chrII 593354 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9882;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.00;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2673,285,0 chrII 593396 . T C 2891 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2924,312,0 chrII 593459 . T G 3187 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3220,342,0 chrII 593719 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=17.9055;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.19;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4523,466,0 chrII 593800 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.2054;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.77;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2188,234,0 chrII 593842 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=141;Dels=0.00;FS=7.194;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.654;QD=21.60;ReadPosRankSum=2.414;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3079,336,0 chrII 593968 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.89;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4327,463,0 chrII 594007 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.31;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3838,400,0 chrII 594022 . C G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.51;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3614,390,0 chrII 594148 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6765;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.55;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4496,478,0 chrII 594298 . A T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.82;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4309,468,0 chrII 594303 . T A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.77;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4267,454,0 chrII 594492 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=226;Dels=0.00;FS=3.027;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-2.254;QD=24.10;ReadPosRankSum=2.341;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5446,577,0 chrII 594781 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.39;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2876,312,0 chrII 594784 . T G 2861 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.71;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2894,309,0 chrII 595055 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.831;QD=24.07;ReadPosRankSum=1.697;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2440,264,0 chrII 595222 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.7675;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.67;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3133,342,0 chrII 595246 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.89;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3187,336,0 chrII 595497 . A G 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=0.262;QD=21.75;ReadPosRankSum=1.697;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2186,234,0 chrII 595508 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.04;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1956,207,0 chrII 595530 . A G 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.587;QD=17.00;ReadPosRankSum=1.703;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2090,228,0 chrII 595808 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.97;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1593,168,0 chrII 595927 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1030,108,0 chrII 596041 . T C 830 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.28;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:863,93,0 chrII 596047 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.50;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1013,105,0 chrII 596219 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.62;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1970,204,0 chrII 596654 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.24;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4299,468,0 chrII 596681 . T A 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=3.158;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.540;QD=21.90;ReadPosRankSum=-0.789;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3942,426,0 chrII 596684 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.10;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3840,423,0 chrII 597341 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.19;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2502,264,0 chrII 597493 . T A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.55;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3930,406,0 chrII 597806 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2716,282,0 chrII 597906 . C G 2160 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.74;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2193,234,0 chrII 598025 . T G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=108;Dels=0.00;FS=10.878;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.991;QD=23.70;ReadPosRankSum=2.934;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2593,279,0 chrII 598133 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.78;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2102,222,0 chrII 598137 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.49;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2096,219,0 chrII 598254 . T G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.350;QD=23.49;ReadPosRankSum=1.681;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3228,345,0 chrII 598272 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.11;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3279,348,0 chrII 598753 . G T 3062 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3095,318,0 chrII 598928 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1699,180,0 chrII 599098 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2065,225,0 chrII 599150 . A T 2583 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2616,276,0 chrII 599573 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=7.991;HaplotypeScore=22.6851;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=1.443;QD=21.19;ReadPosRankSum=2.366;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:4387,483,0 chrII 599687 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3466,369,0 chrII 599732 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.87;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3485,372,0 chrII 599869 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2897,306,0 chrII 599903 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.114;QD=23.20;ReadPosRankSum=1.675;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2864,312,0 chrII 599979 . G T 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1788;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.73;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,288,0 chrII 600019 . C G 2877 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.20;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2910,321,0 chrII 600505 . T A 1775 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.00;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1808,183,0 chrII 600570 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.67;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1355,141,0 chrII 600577 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.89;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1478,156,0 chrII 600991 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.0643;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.488;QD=23.81;ReadPosRankSum=1.708;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3428,369,0 chrII 601074 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.21;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3045,321,0 chrII 601087 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.106;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-1.259;QD=19.68;ReadPosRankSum=1.632;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2768,303,0 chrII 601097 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-0.012;QD=19.24;ReadPosRankSum=1.682;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2708,282,0 chrII 601104 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.4259;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=18.20;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2618,267,0 chrII 601142 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.51;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2921,315,0 chrII 601251 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=25.02;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3578,384,0 chrII 601570 . G T 3096 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.77;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3129,330,0 chrII 602047 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2588,270,0 chrII 602171 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.25;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4144,430,0 chrII 602182 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.387;QD=19.94;ReadPosRankSum=2.425;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3988,438,0 chrII 602361 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.74;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3638,381,0 chrII 602682 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.92;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3174,339,0 chrII 602687 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.98;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3127,330,0 chrII 602697 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.15;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3137,327,0 chrII 602847 . G C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7605;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.39;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3979,420,0 chrII 602855 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.41;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3796,411,0 chrII 603595 . A T 2399 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=85.1981;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.42;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2432,255,0 chrII 603825 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=23.36;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4042,415,0 chrII 603837 . A T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.88;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3362,372,0 chrII 603865 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.434;QD=19.50;ReadPosRankSum=1.709;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2997,330,0 chrII 603916 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.267;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.143;QD=21.84;ReadPosRankSum=1.710;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3450,375,0 chrII 603980 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=3.289;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.754;QD=20.89;ReadPosRankSum=1.713;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3719,393,0 chrII 603992 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.41;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3474,378,0 chrII 604017 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.60;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3391,357,0 chrII 604051 . A T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.81;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3729,393,0 chrII 604155 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.732;QD=23.56;ReadPosRankSum=1.712;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4029,438,0 chrII 604449 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3241,354,0 chrII 605039 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.54;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2536,261,0 chrII 605067 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.52;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2785,303,0 chrII 605709 . C A 1996 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.94;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2029,225,0 chrII 605773 . C T 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=4.048;HaplotypeScore=4.0522;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.314;QD=17.64;ReadPosRankSum=1.432;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2273,252,0 chrII 605775 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=2.814;HaplotypeScore=5.6295;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.013;QD=17.81;ReadPosRankSum=2.371;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2277,255,0 chrII 605930 . T C 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.821;QD=22.42;ReadPosRankSum=2.378;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4597,487,0 chrII 605969 . A C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=199;Dels=0.00;FS=12.982;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.759;QD=18.50;ReadPosRankSum=2.944;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,193:199:99:3681,396,0 chrII 605997 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=16.95;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3729,393,0 chrII 606236 . A G 5318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.720;QD=24.17;ReadPosRankSum=1.700;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5318,565,0 chrII 606458 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.5915;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.58;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4228,445,0 chrII 606494 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.77;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3268,348,0 chrII 606590 . C G 3574.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3574,387,0 chrII 606658 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.177;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0953;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.787;QD=24.21;ReadPosRankSum=2.398;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4575,495,0 chrII 607035 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2461;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.36;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2247,240,0 chrII 607269 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.13;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:84:781,84,0 chrII 607487 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=25.73;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3069,318,0 chrII 607539 . A C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.547;DP=118;Dels=0.00;FS=9.601;HaplotypeScore=1.9880;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.701;QD=21.14;ReadPosRankSum=2.496;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2528,276,0 chrII 607542 . A T 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.448;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.931;QD=21.84;ReadPosRankSum=2.279;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2545,276,0 chrII 607558 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.82;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2520,267,0 chrII 607602 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6290;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.13;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2569,267,0 chrII 607669 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.99;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3422,378,0 chrII 607705 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=143;Dels=0.00;FS=9.594;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.233;QD=19.67;ReadPosRankSum=2.909;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2846,315,0 chrII 607867 . C A 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=6.677;HaplotypeScore=7.7407;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.664;QD=19.30;ReadPosRankSum=-1.441;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2117,225,0 chrII 608320 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=2.940;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.421;QD=23.49;ReadPosRankSum=2.357;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3782,408,0 chrII 608350 . T C 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.711;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.658;QD=22.19;ReadPosRankSum=1.695;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4172,459,0 chrII 608432 . A C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=7.497;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.961;QD=22.43;ReadPosRankSum=2.421;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3835,420,0 chrII 609073 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=3.832;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.030;QD=23.62;ReadPosRankSum=1.702;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2796,297,0 chrII 609102 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.04;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3134,333,0 chrII 609255 . A T 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.857;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.855;QD=25.02;ReadPosRankSum=1.644;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3953,409,0 chrII 609397 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.339;HaplotypeScore=14.0456;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.245;QD=23.07;ReadPosRankSum=1.714;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4452,475,0 chrII 609547 . C T 6276.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.20;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6276,673,0 chrII 609798 . G T 2602 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2635,276,0 chrII 610045 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3551,393,0 chrII 610094 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.9609;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.42;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3297,348,0 chrII 610295 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.122;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.732;QD=23.88;ReadPosRankSum=1.710;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3797,408,0 chrII 610339 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.12;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3329,351,0 chrII 610376 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.52;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3009,327,0 chrII 610378 . G C 2810 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.51;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2843,306,0 chrII 610437 . A T 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=175;Dels=0.00;FS=5.972;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.167;QD=23.01;ReadPosRankSum=2.960;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4026,421,0 chrII 610492 . T G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.063;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.271;QD=23.89;ReadPosRankSum=1.690;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3990,429,0 chrII 610603 . G T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.3078;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.07;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5391,574,0 chrII 610797 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=210;Dels=0.00;FS=4.409;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.996;QD=20.17;ReadPosRankSum=1.682;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4235,450,0 chrII 611052 . G T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.62;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3619,376,0 chrII 611232 . A C 3879.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3879,414,0 chrII 611711 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.085;DP=163;Dels=0.00;FS=10.782;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.573;QD=24.45;ReadPosRankSum=4.147;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:6,157:163:99:3985,429,0 chrII 611905 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3448,381,0 chrII 612275 . A G 2745 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.96;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2778,306,0 chrII 612287 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.44;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2906,300,0 chrII 612323 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.17;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3209,336,0 chrII 612575 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=213;Dels=0.00;FS=8.324;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.098;QD=21.31;ReadPosRankSum=2.346;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4540,510,0 chrII 612968 . G A 7594.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=17.6430;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.81;SB=-3.830e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:7594,805,0 chrII 613145 . G A 7962.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.70;SB=-4.108e+03 GT:AD:DP:GQ:PL 1/1:0,336:336:99:7962,832,0 chrII 613202 . G A 7517.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.71;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:7517,811,0 chrII 613388 . C T 9114.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=8.9891;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.70;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:0,368:369:99:9114,985,0 chrII 613415 . A G 8971.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=379;Dels=0.00;FS=8.624;HaplotypeScore=16.7045;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.025;QD=23.67;ReadPosRankSum=2.417;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:2,375:379:99:8971,973,0 chrII 613517 . A G 9552.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=403;Dels=0.00;FS=3.018;HaplotypeScore=19.9194;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.284;QD=23.70;ReadPosRankSum=2.382;SB=-5.478e+03 GT:AD:DP:GQ:PL 1/1:2,401:403:99:9552,1009,0 chrII 614131 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.15;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2786,294,0 chrII 614308 . G T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.6118;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.20;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4477,480,0 chrII 614359 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=205;Dels=0.00;FS=3.002;HaplotypeScore=14.1479;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-2.138;QD=23.09;ReadPosRankSum=2.414;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4733,505,0 chrII 614485 . G C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.14;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3943,429,0 chrII 614507 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.80;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4058,418,0 chrII 614520 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.282;QD=19.91;ReadPosRankSum=1.715;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4041,444,0 chrII 614550 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.32;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3709,385,0 chrII 614683 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=213;Dels=0.00;FS=2.984;HaplotypeScore=16.0148;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.446;QD=22.50;ReadPosRankSum=2.392;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4793,522,0 chrII 614824 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=177;Dels=0.01;FS=2.583;HaplotypeScore=16.0549;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.339;QD=21.78;ReadPosRankSum=2.959;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:3,170:176:99:3855,414,0 chrII 614924 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3687,390,0 chrII 615097 . T A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.10;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4387,477,0 chrII 615157 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=166;Dels=0.00;FS=13.464;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.092;QD=23.19;ReadPosRankSum=2.920;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3849,408,0 chrII 615204 . C A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=18.2940;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.59;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4631,510,0 chrII 615346 . G A 6126.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=16.2775;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.77;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6126,646,0 chrII 615566 . T C 4876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=4.290;HaplotypeScore=17.4655;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.355;QD=20.32;ReadPosRankSum=1.718;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:4876,540,0 chrII 615644 . T C 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=267;Dels=0.00;FS=14.314;HaplotypeScore=14.5610;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.701;QD=20.69;ReadPosRankSum=2.951;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:5524,603,0 chrII 615654 . G C 5836.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.22;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,269:275:99:5836,610,0 chrII 615698 . G A 5106.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.54;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5106,538,0 chrII 615775 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8514;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.60;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3368,346,0 chrII 615887 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=152;Dels=0.00;FS=2.970;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.675;QD=20.20;ReadPosRankSum=2.368;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3104,342,0 chrII 615970 . C G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.71;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3889,432,0 chrII 616310 . G A 5006.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5006,540,0 chrII 616376 . A G 4931.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.72;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4931,529,0 chrII 616532 . C T 5327.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5327,553,0 chrII 616646 . C T 6099.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=10.7570;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:6099,646,0 chrII 616805 . A C 5481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=3.237;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=23.22;ReadPosRankSum=1.717;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5481,606,0 chrII 616838 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.3507;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.76;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5132,535,0 chrII 617504 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=119;Dels=0.00;FS=9.947;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.161;QD=23.08;ReadPosRankSum=2.789;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2780,306,0 chrII 617606 . A C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=106;Dels=0.00;FS=4.232;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.196;QD=22.58;ReadPosRankSum=1.667;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2426,239,0 chrII 617783 . A T 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.107;QD=23.78;ReadPosRankSum=1.689;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1959,207,0 chrII 617810 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=84;Dels=0.00;FS=6.150;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.253;QD=23.31;ReadPosRankSum=2.868;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1991,210,0 chrII 618167 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3403,363,0 chrII 618353 . C T 5246.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.95;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5246,550,0 chrII 618506 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.672;DP=203;Dels=0.00;FS=4.879;HaplotypeScore=22.8992;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.945;QD=19.57;ReadPosRankSum=3.811;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:5,197:203:99:3972,429,0 chrII 618597 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=179;Dels=0.00;FS=7.212;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.844;QD=22.21;ReadPosRankSum=2.366;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:3975,435,0 chrII 618681 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=25.90;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3963,412,0 chrII 618736 . T G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=12.7795;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=24.81;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:4144,441,0 chrII 618841 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-1.199;QD=21.51;ReadPosRankSum=1.712;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3656,387,0 chrII 618844 . A T 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=2.923;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-0.134;QD=21.29;ReadPosRankSum=2.407;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3705,385,0 chrII 618892 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=10.7672;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=16.74;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2946,315,0 chrII 618901 . G A 2805 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=16.60;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2838,297,0 chrII 618907 . A G 2539 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=-1.057;QD=16.49;ReadPosRankSum=1.665;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2572,273,0 chrII 618908 . T C 2557 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=157;Dels=0.00;FS=11.609;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;MQRankSum=-2.084;QD=16.29;ReadPosRankSum=2.917;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2590,276,0 chrII 618941 . T G 2979 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=16.74;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3012,333,0 chrII 619028 . C A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.99;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3518,384,0 chrII 619256 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.61;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3790,400,0 chrII 619502 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.47;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2730,294,0 chrII 619507 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.17;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2952,306,0 chrII 619746 . A G 2433 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.27;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2466,261,0 chrII 619747 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=7.760;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.292;QD=21.04;ReadPosRankSum=2.388;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2558,267,0 chrII 620102 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4290,445,0 chrII 620149 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3786,408,0 chrII 620302 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3593,381,0 chrII 620443 . G T 1778 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1811,189,0 chrII 620480 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1814,195,0 chrII 620513 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.04;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2136,231,0 chrII 620680 . A G 2647 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.06;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2680,294,0 chrII 620925 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.302;QD=24.90;ReadPosRankSum=1.708;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3610,378,0 chrII 621057 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.98;ReadPosRankSum=1.703;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2714,288,0 chrII 621285 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3463,375,0 chrII 621546 . C T 5895.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.1319;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.87;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5895,619,0 chrII 621963 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2784,303,0 chrII 622305 . T A 2591 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.68;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2624,276,0 chrII 622655 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:985,102,0 chrII 622789 . G T 962 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.00;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:995,105,0 chrII 622849 . A T 1138 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.07;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1171,126,0 chrII 622888 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1737,198,0 chrII 622971 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.431;QD=22.99;ReadPosRankSum=1.694;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2171,231,0 chrII 622981 . A C 2196 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.18;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2229,237,0 chrII 623027 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4291;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.65;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2155,228,0 chrII 623272 . C A 2886 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.72;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2919,321,0 chrII 623413 . A T 2792 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.39;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2825,294,0 chrII 623418 . A T 2564 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.06;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2597,282,0 chrII 623427 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=143;Dels=0.00;FS=2.945;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.549;QD=17.31;ReadPosRankSum=2.415;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2509,267,0 chrII 623785 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.13;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4371,468,0 chrII 623818 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=174;Dels=0.00;FS=6.010;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.585;QD=24.39;ReadPosRankSum=2.959;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:4243,456,0 chrII 623968 . G T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.94;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3785,411,0 chrII 624009 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.12;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4245,445,0 chrII 624052 . A T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.29;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4129,433,0 chrII 624076 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.352;QD=22.63;ReadPosRankSum=1.665;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3576,387,0 chrII 624215 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.043;QD=24.47;ReadPosRankSum=1.667;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3915,414,0 chrII 624273 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.251;QD=22.35;ReadPosRankSum=1.708;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3251,363,0 chrII 624493 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=8.1623;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.42;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2963,309,0 chrII 624540 . A T 1818 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9625;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.20;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1851,198,0 chrII 624736 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.10;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1573,168,0 chrII 624740 . A G 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=70;Dels=0.00;FS=4.075;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.377;QD=20.10;ReadPosRankSum=1.230;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1440,153,0 chrII 624762 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.750;QD=19.45;ReadPosRankSum=2.383;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1472,159,0 chrII 624798 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.65;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1618,171,0 chrII 624805 . G A 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9986;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=0.509;QD=17.20;ReadPosRankSum=1.162;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1512,156,0 chrII 624836 . C A 2134 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.34;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2167,222,0 chrII 625077 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.78;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3424,369,0 chrII 625150 . C G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.46;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4270,451,0 chrII 625203 . C A 2774 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.84;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2807,297,0 chrII 625210 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.10;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2646,273,0 chrII 625234 . T G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.890;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.982;QD=20.86;ReadPosRankSum=1.703;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2536,273,0 chrII 625298 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=14.5334;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.251;QD=23.53;ReadPosRankSum=1.682;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3294,351,0 chrII 625628 . A C 3008 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.86;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3041,330,0 chrII 625690 . C A 2573 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.98;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2606,273,0 chrII 625721 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2025,210,0 chrII 625733 . G C 2182 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.03;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2215,237,0 chrII 625761 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.787;QD=19.92;ReadPosRankSum=1.706;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2663,285,0 chrII 625843 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.9693;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.52;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4446,469,0 chrII 625876 . T C 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.038;QD=24.29;ReadPosRankSum=1.713;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4494,489,0 chrII 626092 . A G 6304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=255;Dels=0.00;FS=10.283;HaplotypeScore=15.9934;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.048;QD=24.72;ReadPosRankSum=2.948;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:3,249:255:99:6304,667,0 chrII 626278 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.9881;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.73;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4865,537,0 chrII 626455 . G A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.76;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4538,466,0 chrII 626470 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.7145;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.87;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4048,421,0 chrII 626608 . T C 5073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.639;QD=23.38;ReadPosRankSum=1.418;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:5073,541,0 chrII 626656 . G A 5072.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.8318;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.86;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5072,535,0 chrII 626680 . A T 5405.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.10;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5405,571,0 chrII 627001 . T A 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.077;QD=23.78;ReadPosRankSum=1.711;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3900,426,0 chrII 627055 . A T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4410,477,0 chrII 628267 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=15.68;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1930,216,0 chrII 628269 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=14.91;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1792,201,0 chrII 628345 . T C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=81;Dels=0.00;FS=8.617;HaplotypeScore=8.5318;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.732;QD=18.05;ReadPosRankSum=1.646;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1495,156,0 chrII 628674 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.99;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2254,243,0 chrII 628807 . T C 991 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.577;QD=19.06;ReadPosRankSum=1.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,50:52:94:1024,94,0 chrII 628898 . T C 102.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=13;Dels=0.00;FS=10.414;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-1.423;QD=7.87;ReadPosRankSum=-1.739;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,10:13:15:135,15,0 chrII 628943 . C G 302 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:14:36:335,36,0 chrII 629013 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1259,132,0 chrII 629133 . A G 1913 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.88;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1946,210,0 chrII 629145 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.28;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1889,207,0 chrII 629259 . G A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.65;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5104,532,0 chrII 629323 . C T 5079.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=25.65;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5079,526,0 chrII 629636 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.38;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2249,234,0 chrII 629641 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.41;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2274,240,0 chrII 629782 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.064;QD=26.33;ReadPosRankSum=2.407;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4608,490,0 chrII 630052 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.35;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3704,408,0 chrII 630091 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=4.8547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.77;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3777,400,0 chrII 630094 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=194;Dels=0.00;FS=5.557;HaplotypeScore=8.0094;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.041;QD=18.19;ReadPosRankSum=2.954;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3528,393,0 chrII 630554 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=185;Dels=0.00;FS=5.253;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.477;QD=23.57;ReadPosRankSum=3.365;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4360,480,0 chrII 630671 . T A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.73;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3569,384,0 chrII 630784 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.92;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2903,303,0 chrII 630833 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3009,321,0 chrII 631243 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.87;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3532,387,0 chrII 631321 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6017;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.53;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3508,375,0 chrII 631353 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.51;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2992,309,0 chrII 631572 . A T 2148 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2181,231,0 chrII 631668 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=26.78;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2256,237,0 chrII 631864 . T C 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.533;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.683;QD=23.85;ReadPosRankSum=1.586;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1726,183,0 chrII 631870 . A G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.899;QD=24.79;ReadPosRankSum=2.380;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1768,189,0 chrII 632170 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1629,171,0 chrII 632747 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=143;Dels=0.00;FS=2.584;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.007;QD=23.50;ReadPosRankSum=2.851;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3360,353,0 chrII 632812 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3739,411,0 chrII 632857 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.54;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4597,484,0 chrII 632896 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.83;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4695,490,0 chrII 632908 . C T 4665.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.56;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4665,487,0 chrII 632938 . G A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.3139;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.65;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4801,505,0 chrII 632980 . G A 5163.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.9901;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.16;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5163,564,0 chrII 633052 . G T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.31;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4885,511,0 chrII 633129 . C T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.5322;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.70;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5311,553,0 chrII 633176 . T G 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=210;Dels=0.00;FS=2.443;HaplotypeScore=11.8404;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.918;QD=22.47;ReadPosRankSum=2.611;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4718,507,0 chrII 633308 . T A 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=186;Dels=0.00;FS=7.581;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-1.631;QD=23.04;ReadPosRankSum=2.410;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4285,456,0 chrII 633318 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=6.648;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.157;QD=22.90;ReadPosRankSum=2.368;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4122,436,0 chrII 633358 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.66;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3487,372,0 chrII 633402 . G C 3020 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=17.87;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3053,336,0 chrII 633409 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.91;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3272,345,0 chrII 633468 . T G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.122;QD=19.87;ReadPosRankSum=1.713;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3716,402,0 chrII 633618 . A C 5235.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.35;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5235,562,0 chrII 633801 . A G 5314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=225;Dels=0.00;FS=2.992;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.278;QD=23.62;ReadPosRankSum=2.428;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5314,576,0 chrII 633855 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=4.245;HaplotypeScore=9.8964;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.500;QD=23.14;ReadPosRankSum=1.696;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4513,469,0 chrII 633876 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.4916;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.49;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4492,475,0 chrII 633957 . G A 4758.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.34;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4758,496,0 chrII 633960 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.60;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4390,477,0 chrII 634225 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.37;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4511,472,0 chrII 634599 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7430;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.52;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3803,399,0 chrII 635127 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.68;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2868,318,0 chrII 635445 . A G 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.391;DP=197;Dels=0.00;FS=7.106;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.591;QD=23.54;ReadPosRankSum=4.405;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:7,190:197:99:4638,490,0 chrII 635478 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:5146,523,0 chrII 635928 . C A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.0215;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.85;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4603,487,0 chrII 635959 . G T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.62;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4748,490,0 chrII 636168 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.07;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4752,510,0 chrII 636267 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.59;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5425,574,0 chrII 636372 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.033;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.164;QD=23.90;ReadPosRankSum=1.679;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4685,499,0 chrII 636537 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.250;QD=22.45;ReadPosRankSum=1.709;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3390,378,0 chrII 636709 . C G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3901,435,0 chrII 636994 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4435;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.14;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2972,315,0 chrII 637041 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.68;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3742,388,0 chrII 637063 . T A 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=6.156;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.145;QD=22.19;ReadPosRankSum=2.419;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3594,375,0 chrII 637264 . T C 5218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=235;Dels=0.00;FS=5.925;HaplotypeScore=20.4546;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.596;QD=22.20;ReadPosRankSum=2.918;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:3,228:235:99:5218,576,0 chrII 637366 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=3.351;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.608;QD=22.35;ReadPosRankSum=1.686;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5051,538,0 chrII 637651 . C G 2846 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.64;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2879,309,0 chrII 637785 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.182;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.309;QD=22.02;ReadPosRankSum=1.705;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2895,306,0 chrII 637795 . C A 2568 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.38;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2601,285,0 chrII 637928 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.2728;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.82;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4145,444,0 chrII 637990 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=26.02;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4449,460,0 chrII 638086 . A G 5775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=230;Dels=0.00;FS=7.436;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=2.065;QD=25.11;ReadPosRankSum=2.428;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5775,613,0 chrII 638716 . A G 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=243;Dels=0.00;FS=3.083;HaplotypeScore=16.0184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.902;QD=22.32;ReadPosRankSum=1.718;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5424,577,0 chrII 639220 . C G 3099 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.7328;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.67;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3132,354,0 chrII 639337 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3096,327,0 chrII 639427 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.60;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2755,297,0 chrII 639700 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.8722;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.79;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4615,478,0 chrII 639745 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.3933;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.79;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4330,457,0 chrII 639793 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=20.4450;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.75;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4589,501,0 chrII 639832 . G A 5056.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.7424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.08;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5056,546,0 chrII 640834 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=3.216;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.684;QD=23.95;ReadPosRankSum=1.700;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5197,559,0 chrII 641071 . T G 4508.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.98;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4508,483,0 chrII 641302 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.07;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3394,360,0 chrII 641433 . A G 3073 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.2776;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.76;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3106,330,0 chrII 641467 . A G 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=7.609;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.076;QD=23.69;ReadPosRankSum=2.311;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4193,453,0 chrII 641842 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.3933;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.18;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4458,475,0 chrII 642049 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.87;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2160,234,0 chrII 642483 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.95;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2695,282,0 chrII 642492 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.0700;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.50;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2554,282,0 chrII 642773 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=25.19;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5214,573,0 chrII 642806 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=25.97;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4337,459,0 chrII 642969 . A G 2329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;MQRankSum=-1.271;QD=15.95;ReadPosRankSum=2.399;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2362,249,0 chrII 642976 . A C 2093 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=3.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-1.037;QD=15.62;ReadPosRankSum=2.303;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2126,231,0 chrII 642978 . G A 2112 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=16.12;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2145,225,0 chrII 643098 . G T 2455 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3461;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.32;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2488,270,0 chrII 643134 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.21;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2447,255,0 chrII 643176 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=24.35;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2687,294,0 chrII 643432 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.6565;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=23.05;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3214,339,0 chrII 643489 . G T 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=61.5001;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=20.18;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1405,147,0 chrII 643914 . G A 395 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=11.62;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:428,54,0 chrII 643915 . T A 395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;MQRankSum=-0.866;QD=10.97;ReadPosRankSum=1.636;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:54:428,54,0 chrII 643925 . G C 567 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=14.17;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:600,72,0 chrII 643931 . T C 627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;MQRankSum=-2.057;QD=14.25;ReadPosRankSum=2.338;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:78:660,78,0 chrII 643961 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=22.71;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1691,183,0 chrII 643991 . A C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=110;Dels=0.00;FS=6.736;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=2.359;QD=20.78;ReadPosRankSum=2.404;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2319,249,0 chrII 644145 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=12.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1384,156,0 chrII 644333 . G T 2723 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=24.98;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2756,282,0 chrII 644482 . G C 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2576,282,0 chrII 644529 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3131,339,0 chrII 644646 . C T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.64;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4559,492,0 chrII 644790 . T C 6456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=263;Dels=0.00;FS=5.801;HaplotypeScore=12.2055;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-2.115;QD=24.55;ReadPosRankSum=2.904;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:3,259:263:99:6456,685,0 chrII 645021 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.00;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4080,432,0 chrII 645058 . C A 2913 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.24;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2946,315,0 chrII 645081 . T C 2057 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.97;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2090,225,0 chrII 645084 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.28;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2041,213,0 chrII 645127 . C A 1716 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.65;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1749,180,0 chrII 645132 . A G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.299;QD=17.41;ReadPosRankSum=1.613;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1565,165,0 chrII 645158 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.52;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2056,219,0 chrII 645289 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.96;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2260,234,0 chrII 645341 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=10.062;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.621;QD=23.80;ReadPosRankSum=2.379;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2532,282,0 chrII 645592 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.96;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3064,321,0 chrII 645738 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.5073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2690,294,0 chrII 645807 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=7.119;HaplotypeScore=9.8756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.967;QD=23.68;ReadPosRankSum=2.393;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3182,339,0 chrII 646209 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1417,150,0 chrII 646524 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3846,405,0 chrII 646843 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=154;Dels=0.00;FS=7.531;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.045;QD=23.16;ReadPosRankSum=2.402;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3567,381,0 chrII 646863 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.84;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4076,427,0 chrII 646935 . A T 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.2907;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.329;QD=23.66;ReadPosRankSum=1.700;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5086,538,0 chrII 647284 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.19;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4500,472,0 chrII 647422 . C G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.59;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3418,375,0 chrII 647496 . A C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.04;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3548,381,0 chrII 647502 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.06;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3454,369,0 chrII 647924 . A G 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=4.815;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.173;QD=22.80;ReadPosRankSum=1.697;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2313,246,0 chrII 648275 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0089;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.61;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3569,367,0 chrII 648554 . C T 5283.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.9243;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.38;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5283,553,0 chrII 648668 . A G 4996.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.0201;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.71;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4996,535,0 chrII 649517 . A T 6246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=260;Dels=0.00;FS=3.468;HaplotypeScore=13.7035;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.813;QD=24.02;ReadPosRankSum=1.679;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:6246,652,0 chrII 649588 . C A 6111.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.0891;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.14;SB=-3.591e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6111,631,0 chrII 649931 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3097,333,0 chrII 650411 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=6.232;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.127;QD=26.59;ReadPosRankSum=1.705;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3377,357,0 chrII 650526 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.57;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4475,469,0 chrII 650548 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0225;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.86;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4032,429,0 chrII 650605 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.75;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4525,472,0 chrII 650619 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=6.373;HaplotypeScore=5.1665;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.409;QD=19.28;ReadPosRankSum=2.424;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3664,387,0 chrII 650631 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5241;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.92;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3689,402,0 chrII 650976 . G A 5943.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.68;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5943,648,0 chrII 651310 . C A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4118,444,0 chrII 651616 . T A 6259.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6259,690,0 chrII 651951 . G A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.60;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4327,448,0 chrII 652086 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1013;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.75;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3423,360,0 chrII 652113 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.51;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3722,388,0 chrII 652362 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1612;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.98;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3546,372,0 chrII 652373 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.83;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3750,388,0 chrII 652587 . T C 5597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=244;Dels=0.00;FS=2.726;HaplotypeScore=19.9199;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.904;QD=22.94;ReadPosRankSum=2.389;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5597,604,0 chrII 652782 . A G 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3534;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.966;QD=19.03;ReadPosRankSum=1.720;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:1,284:286:99:5442,606,0 chrII 652830 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=294;Dels=0.00;FS=4.442;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.107;QD=18.30;ReadPosRankSum=1.637;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:1,291:294:99:5380,574,0 chrII 653007 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=17.05;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1960,207,0 chrII 653133 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.14;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1804,192,0 chrII 653239 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=76.3541;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=0.17;SB=-8.128e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:6:45,6,0 chrII 653275 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.44;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1908,207,0 chrII 653427 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.64;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2682,288,0 chrII 653429 . G C 2589 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.13;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2622,282,0 chrII 653440 . C A 2447 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.65;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2480,270,0 chrII 653730 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=8.1258;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.702;QD=21.72;ReadPosRankSum=1.702;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2552,282,0 chrII 653876 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2554,261,0 chrII 654127 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.97;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2955,309,0 chrII 654312 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1173;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=24.87;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3269,348,0 chrII 654339 . C G 2816 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=21.01;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2849,315,0 chrII 654351 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=18.86;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2523,276,0 chrII 654360 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=18.28;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2446,264,0 chrII 654388 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.670;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.122;QD=16.96;ReadPosRankSum=1.659;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2441,264,0 chrII 654500 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=13.92;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1815,192,0 chrII 654507 . T C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;MQRankSum=-0.433;QD=10.82;ReadPosRankSum=1.617;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1331,153,0 chrII 654520 . A C 1084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=135;Dels=0.00;FS=3.002;HaplotypeScore=11.6012;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=0.064;QD=8.03;ReadPosRankSum=1.794;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:1117,132,0 chrII 654523 . G T 1009 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=10.7690;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=8.14;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1042,117,0 chrII 654525 . C T 980 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=125;Dels=0.00;FS=2.945;HaplotypeScore=9.8025;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;MQRankSum=-1.486;QD=7.84;ReadPosRankSum=1.741;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1013,114,0 chrII 655451 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2323,249,0 chrII 655511 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.64;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2623,273,0 chrII 656242 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=126;Dels=0.00;FS=2.899;HaplotypeScore=8.2831;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.466;QD=22.55;ReadPosRankSum=2.292;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2874,292,0 chrII 656467 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:2022,213,0 chrII 656530 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.85;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2871,309,0 chrII 656574 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=130;Dels=0.00;FS=2.587;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.659;QD=22.25;ReadPosRankSum=2.946;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2925,309,0 chrII 656779 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=7.287;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.131;QD=23.41;ReadPosRankSum=2.419;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3746,402,0 chrII 657120 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5894;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.75;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2854,312,0 chrII 657562 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.023;QD=22.83;ReadPosRankSum=2.343;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3698,402,0 chrII 657582 . T A 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=5.085;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.316;QD=22.77;ReadPosRankSum=1.710;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3598,381,0 chrII 657722 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.42;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4118,433,0 chrII 658299 . A G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=4.559;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.000;QD=21.72;ReadPosRankSum=1.697;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2248,249,0 chrII 658786 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.57;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3125,333,0 chrII 658797 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.65;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3256,348,0 chrII 659576 . G T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.77;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4468,466,0 chrII 659685 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=4.125;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.327;QD=23.40;ReadPosRankSum=1.650;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5007,558,0 chrII 660237 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.40;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4221,453,0 chrII 660369 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=196;Dels=0.00;FS=10.516;HaplotypeScore=12.8200;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.872;QD=23.00;ReadPosRankSum=2.954;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4508,481,0 chrII 660402 . C T 5356.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.6409;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.09;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5356,565,0 chrII 660728 . G A 4663.01 filter AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.9915;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=5;QD=22.10;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4663,493,0 chrII 661314 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=2.905;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.056;QD=22.21;ReadPosRankSum=2.412;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4397,477,0 chrII 661542 . A T 6969.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=2;QD=24.20;SB=-3.739e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6969,748,0 chrII 661818 . T A 7069.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=23.33;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7069,751,0 chrII 661878 . G A 5376.01 filter AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.2559;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=7;QD=21.42;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5376,571,0 chrII 662073 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.18;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3370,357,0 chrII 662094 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=160;Dels=0.00;FS=2.710;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.505;QD=17.99;ReadPosRankSum=2.387;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:2911,318,0 chrII 662112 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.09;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2855,312,0 chrII 662196 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.12;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3316,348,0 chrII 662272 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.53;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2647,273,0 chrII 662354 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.71;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3497,369,0 chrII 662444 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.55;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1799,189,0 chrII 662477 . T A 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.310;HaplotypeScore=7.6372;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.379;QD=23.25;ReadPosRankSum=1.666;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2474,261,0 chrII 662669 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.92;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2879,309,0 chrII 662749 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1850,204,0 chrII 663226 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.40;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4023,438,0 chrII 663478 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4808;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.121;QD=24.14;ReadPosRankSum=-1.182;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4104,435,0 chrII 663562 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.3805;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.01;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4009,441,0 chrII 663901 . T C 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.706;QD=21.04;ReadPosRankSum=1.715;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4418,495,0 chrII 663960 . T G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.2791;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.49;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3546,390,0 chrII 664165 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.774;QD=23.27;ReadPosRankSum=1.712;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3956,432,0 chrII 664354 . T A 5715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=19.2415;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.044;QD=24.01;ReadPosRankSum=1.703;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5715,592,0 chrII 664761 . G T 3179 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.72;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3212,336,0 chrII 665139 . G C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.18;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3434,372,0 chrII 665576 . C A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.16;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4030,424,0 chrII 665795 . A G 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.247;HaplotypeScore=12.9717;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.515;QD=23.44;ReadPosRankSum=1.665;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4875,523,0 chrII 666366 . A T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.34;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4187,450,0 chrII 666708 . A G 3074 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.77;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3107,333,0 chrII 666849 . T A 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.402;QD=23.50;ReadPosRankSum=1.709;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3455,363,0 chrII 666875 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.06;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3375,346,0 chrII 666885 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.32;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3122,330,0 chrII 667131 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.96;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4553,498,0 chrII 667170 . C T 4949.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.75;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4949,517,0 chrII 667779 . A G 5620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.9463;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.773;QD=22.94;ReadPosRankSum=2.399;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:5620,621,0 chrII 668585 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=6.746;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.289;QD=18.87;ReadPosRankSum=1.643;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,155:160:99:3052,321,0 chrII 668596 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.9015;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.58;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3328,342,0 chrII 668651 . C T 6135.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.39;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6135,655,0 chrII 668968 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.25;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,190:195:99:4339,460,0 chrII 668984 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.169;QD=23.05;ReadPosRankSum=2.425;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4518,478,0 chrII 669257 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.28;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3182,328,0 chrII 669262 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.21;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3442,360,0 chrII 669668 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.95;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4266,442,0 chrII 670071 . G A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.08;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4755,505,0 chrII 670083 . T C 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.030;QD=22.21;ReadPosRankSum=2.414;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:3,204:209:99:4641,496,0 chrII 670150 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.80;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4104,430,0 chrII 670277 . G C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.23;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:4157,447,0 chrII 670302 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.55;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4340,468,0 chrII 670480 . A T 2498 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=18.37;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2531,267,0 chrII 670486 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=5.290;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.366;QD=16.69;ReadPosRankSum=1.708;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2403,267,0 chrII 670742 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.63;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3349,369,0 chrII 671233 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.50;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3545,369,0 chrII 671364 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.44;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2322,252,0 chrII 671376 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.07;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2240,240,0 chrII 671544 . A T 2534 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.84;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2567,273,0 chrII 671577 . T C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.016;QD=24.20;ReadPosRankSum=1.700;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2671,294,0 chrII 672003 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=146;Dels=0.00;FS=5.953;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.676;QD=22.54;ReadPosRankSum=2.924;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3291,351,0 chrII 672013 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=145;Dels=0.00;FS=9.776;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.215;QD=22.08;ReadPosRankSum=2.952;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3235,339,0 chrII 672147 . T G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.462;QD=24.35;ReadPosRankSum=1.658;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3457,372,0 chrII 672200 . A C 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.314;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.983;QD=24.87;ReadPosRankSum=1.709;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3706,399,0 chrII 672318 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3500,363,0 chrII 673212 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.72;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2792,312,0 chrII 673311 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.53;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1593,171,0 chrII 673342 . T A 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=3.880;HaplotypeScore=53.3692;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.681;QD=16.74;ReadPosRankSum=1.600;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1054,114,0 chrII 673390 . G T 1202 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.70;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1235,129,0 chrII 673610 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1819,192,0 chrII 673645 . A G 2044 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:2077,219,0 chrII 674295 . T A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.3729;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.55;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3952,423,0 chrII 674756 . C T 4704.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4880;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.50;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4704,499,0 chrII 674848 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.08;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3423,357,0 chrII 675146 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.57;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2155,228,0 chrII 675204 . T A 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4590;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.470;QD=16.40;ReadPosRankSum=3.548;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:6,100:106:99:1771,198,0 chrII 675206 . A G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2477;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.884;QD=16.13;ReadPosRankSum=3.674;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:6,103:110:99:1807,201,0 chrII 675236 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.61;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2367,246,0 chrII 675293 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.873;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.228;QD=22.84;ReadPosRankSum=1.705;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2979,321,0 chrII 675612 . T C 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=5.222;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.009;QD=22.80;ReadPosRankSum=1.698;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4675,534,0 chrII 675714 . G C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3336,366,0 chrII 675804 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.06;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2523,267,0 chrII 675879 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.80;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3180,351,0 chrII 676050 . T C 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.785;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.844;QD=22.25;ReadPosRankSum=-0.696;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2636,263,0 chrII 676055 . G C 2523 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.20;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2556,282,0 chrII 676110 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.54;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2416,264,0 chrII 676125 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.19;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2363,252,0 chrII 676163 . T C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=5.822;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.728;QD=19.73;ReadPosRankSum=1.667;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2184,243,0 chrII 676339 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.722;QD=20.84;ReadPosRankSum=1.660;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2075,216,0 chrII 676341 . A C 2033 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.33;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2066,216,0 chrII 676380 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.37;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2164,231,0 chrII 676447 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.33;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2442,261,0 chrII 676481 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.65;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2658,279,0 chrII 676577 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.20;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3898,423,0 chrII 676632 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.50;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2957,321,0 chrII 676645 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.831;QD=20.44;ReadPosRankSum=1.676;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2567,276,0 chrII 677014 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3031,318,0 chrII 677110 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.438;QD=25.39;ReadPosRankSum=1.715;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:5103,550,0 chrII 677653 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2980;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.70;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2780,303,0 chrII 677672 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.60;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2790,294,0 chrII 677719 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.97;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2713,291,0 chrII 678377 . C T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.42;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4703,493,0 chrII 678410 . A G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.150;QD=24.84;ReadPosRankSum=1.699;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5167,547,0 chrII 678574 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.64;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3600,387,0 chrII 678648 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=12.6194;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4064,438,0 chrII 678941 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4089,427,0 chrII 678984 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=181;Dels=0.00;FS=5.899;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.062;QD=23.11;ReadPosRankSum=2.961;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:4182,444,0 chrII 679024 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.66;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4033,421,0 chrII 679063 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.83;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3955,432,0 chrII 679168 . C G 2851 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.5171;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.10;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2884,306,0 chrII 679276 . A C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.040;QD=21.16;ReadPosRankSum=2.847;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2678,303,0 chrII 679332 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.39;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1764,183,0 chrII 679502 . G A 796 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.95;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:829,93,0 chrII 679642 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.68;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2208,237,0 chrII 679643 . G T 2227 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.87;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2260,243,0 chrII 680333 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=216;Dels=0.00;FS=3.031;HaplotypeScore=279.2274;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.281;QD=14.10;ReadPosRankSum=1.684;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:3078,336,0 chrII 680372 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.146;DP=162;Dels=0.00;FS=19.678;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.754;QD=8.73;ReadPosRankSum=4.146;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:6,155:162:99:1447,156,0 chrII 680373 . A C 1446 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=9.21;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:1479,156,0 chrII 680550 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.64;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2684,297,0 chrII 680703 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.04;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2158,222,0 chrII 680726 . A G 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.861;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.106;QD=20.01;ReadPosRankSum=1.626;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1994,219,0 chrII 681001 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.69;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3553,372,0 chrII 681025 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.283;QD=22.78;ReadPosRankSum=2.401;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3463,372,0 chrII 681127 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.7972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.87;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3414,363,0 chrII 681206 . A T 3136 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.23;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3169,330,0 chrII 681344 . T G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=3.018;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.028;QD=23.79;ReadPosRankSum=2.412;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3173,336,0 chrII 681398 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.59;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2689,279,0 chrII 681414 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.165;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.669;QD=19.60;ReadPosRankSum=1.702;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2287,252,0 chrII 681488 . T A 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.92;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3014,315,0 chrII 681492 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.53;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2940,309,0 chrII 681557 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.06;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2665,279,0 chrII 682145 . G T 2398 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.22;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2431,258,0 chrII 682192 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=25.66;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3772,399,0 chrII 682449 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.18;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4680,496,0 chrII 682462 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.71;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4516,475,0 chrII 682551 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.02;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4756,502,0 chrII 682968 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.2137;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.187;QD=19.32;ReadPosRankSum=1.066;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4424,463,0 chrII 682981 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.55;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:3822,399,0 chrII 683268 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.62;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3873,411,0 chrII 683415 . C T 5203.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5203,547,0 chrII 683586 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=198;Dels=0.00;FS=9.921;HaplotypeScore=13.5883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.635;QD=20.12;ReadPosRankSum=2.924;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3983,438,0 chrII 683794 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.42;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4528,498,0 chrII 684214 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.72;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3634,379,0 chrII 684585 . G T 2537 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.49;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2570,267,0 chrII 684795 . A G 1434 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.06;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1467,159,0 chrII 684797 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.89;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1521,162,0 chrII 685165 . A G 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=185;Dels=0.00;FS=3.457;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.468;QD=24.61;ReadPosRankSum=1.676;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4552,483,0 chrII 685306 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7195;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=23.48;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2944,318,0 chrII 685510 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2757,288,0 chrII 685662 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4191,447,0 chrII 686563 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.54;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3414,363,0 chrII 686624 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.63;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3065,321,0 chrII 686767 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.78;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3004,318,0 chrII 686783 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.04;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3252,354,0 chrII 687029 . C T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.1761;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.17;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4278,456,0 chrII 687350 . T C 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.039;QD=23.92;ReadPosRankSum=1.716;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:5024,532,0 chrII 687626 . A T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1973;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.45;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3823,411,0 chrII 687872 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5046;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.668;QD=23.24;ReadPosRankSum=1.705;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2984,321,0 chrII 687980 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.22;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3318,345,0 chrII 688310 . A T 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.239;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.311;QD=23.15;ReadPosRankSum=1.710;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3612,399,0 chrII 688355 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.68;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3765,402,0 chrII 688364 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=23.09;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3556,372,0 chrII 688475 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4426;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.21;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2942,303,0 chrII 688487 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.02;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3071,316,0 chrII 688640 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.08;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3143,330,0 chrII 688700 . A T 2949 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.37;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2982,318,0 chrII 688949 . T A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4257;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.29;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3692,390,0 chrII 689085 . A C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=3.070;HaplotypeScore=21.8849;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.878;QD=22.56;ReadPosRankSum=1.708;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3316,366,0 chrII 689156 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.86;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4525,472,0 chrII 689867 . G C 4549.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4549,501,0 chrII 689912 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.34;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3714,388,0 chrII 689996 . A C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6215;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.45;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3704,399,0 chrII 690123 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.409;QD=24.59;ReadPosRankSum=1.708;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3541,378,0 chrII 690313 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.503;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.343;QD=23.22;ReadPosRankSum=1.713;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4179,450,0 chrII 690330 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.26;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3917,420,0 chrII 691208 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3969,438,0 chrII 691367 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3844,397,0 chrII 691485 . G T 5157.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.8786;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.88;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5157,529,0 chrII 691521 . A G 5242.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=25.32;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5242,550,0 chrII 691649 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.65;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3330,346,0 chrII 691707 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.71;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3267,360,0 chrII 691711 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.75;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3320,348,0 chrII 691742 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.66;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2923,315,0 chrII 691776 . G T 2139 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.93;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,108:113:99:2172,237,0 chrII 691838 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.05;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2318,240,0 chrII 691869 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=20.07;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2020,225,0 chrII 691880 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=9.211;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.012;QD=17.48;ReadPosRankSum=2.402;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1833,192,0 chrII 691893 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=16.74;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1607,174,0 chrII 691937 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=15.99;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1520,165,0 chrII 691950 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.32;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1656,171,0 chrII 692083 . C A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=25.68;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3287,340,0 chrII 692126 . G C 2658 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.39;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2691,285,0 chrII 692195 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.553;QD=25.60;ReadPosRankSum=1.702;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3003,315,0 chrII 692366 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.31;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3247,336,0 chrII 692680 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=25.63;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2468,255,0 chrII 692883 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.80;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2882,312,0 chrII 692889 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.88;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2816,300,0 chrII 693069 . A T 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.598;QD=26.26;ReadPosRankSum=1.692;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4516,481,0 chrII 693391 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3670,379,0 chrII 693469 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.82;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3599,393,0 chrII 693651 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.44;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3609,390,0 chrII 693825 . T A 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=176;Dels=0.00;FS=2.999;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.333;QD=24.42;ReadPosRankSum=2.366;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4298,445,0 chrII 693923 . T C 2721 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=23.06;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2754,297,0 chrII 693925 . G A 2767 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=23.65;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2800,297,0 chrII 693928 . C T 2702 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=22.15;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2735,288,0 chrII 694124 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.22;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2274,240,0 chrII 694133 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=17.66;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2188,225,0 chrII 694151 . T A 2026 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=15.23;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2059,213,0 chrII 694153 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=137;Dels=0.00;FS=5.625;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.419;QD=14.93;ReadPosRankSum=2.949;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2078,219,0 chrII 694443 . A T 2175 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.14;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2208,234,0 chrII 694512 . A G 1143 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.670;QD=20.41;ReadPosRankSum=1.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1176,129,0 chrII 694669 . G A 77.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:110,12,0 chrII 694728 . G A 435 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.69;MQ0=0;QD=22.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:57:468,57,0 chrII 695368 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=179;Dels=0.00;FS=9.058;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.037;QD=21.72;ReadPosRankSum=3.221;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:4,173:179:99:3887,432,0 chrII 695575 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8672;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.98;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4068,444,0 chrII 695857 . A T 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9533;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.093;QD=22.86;ReadPosRankSum=1.658;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3256,345,0 chrII 696541 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3854,411,0 chrII 696652 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=3.446;HaplotypeScore=13.8380;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.740;QD=23.15;ReadPosRankSum=1.697;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4653,498,0 chrII 696781 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.327;QD=23.61;ReadPosRankSum=1.708;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3376,363,0 chrII 697043 . T C 5325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=231;Dels=0.00;FS=5.657;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=23.05;ReadPosRankSum=2.856;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:5325,585,0 chrII 697455 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2308,240,0 chrII 697695 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3544,387,0 chrII 697900 . T G 2466 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5219;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.49;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2499,261,0 chrII 697933 . C A 2100 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.34;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2133,225,0 chrII 698208 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1811,192,0 chrII 698648 . A T 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=151;Dels=0.00;FS=5.857;HaplotypeScore=7.1400;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.407;QD=21.79;ReadPosRankSum=2.940;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3290,357,0 chrII 698958 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=192;Dels=0.00;FS=6.060;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.047;QD=22.92;ReadPosRankSum=2.890;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4401,466,0 chrII 699308 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=2.892;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.165;QD=24.02;ReadPosRankSum=2.408;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4276,459,0 chrII 699380 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4331,480,0 chrII 699560 . T C 5866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=246;Dels=0.00;FS=5.893;HaplotypeScore=21.4711;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.521;QD=23.85;ReadPosRankSum=2.930;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:5866,625,0 chrII 699675 . T C 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.947;QD=24.04;ReadPosRankSum=1.698;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4880,511,0 chrII 699878 . A G 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.3947;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.562;QD=22.19;ReadPosRankSum=1.583;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3661,390,0 chrII 700005 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.95;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2503,264,0 chrII 700064 . G C 2657 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.38;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2690,291,0 chrII 700097 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.50;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2581,276,0 chrII 700199 . A T 381 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=9.29;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:48:414,48,0 chrII 700223 . G C 697 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:78:730,78,0 chrII 700246 . T C 1019 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1052,114,0 chrII 700280 . C T 790 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:31:84:823,84,0 chrII 700423 . T C 1480 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.9217;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1513,159,0 chrII 700682 . G A 6111.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.2095;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.32;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6111,628,0 chrII 700715 . C T 5510.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.19;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5510,603,0 chrII 700736 . G A 5121.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.88;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5121,532,0 chrII 702291 . C T 6000.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6000,625,0 chrII 702460 . G T 5477.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.02;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5477,597,0 chrII 704219 . T C 2389 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2422,258,0 chrII 704358 . G T 984 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1017,105,0 chrII 704676 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3298;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2689,279,0 chrII 706067 . G A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.89;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5327,556,0 chrII 707207 . A G 2262 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7966;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.56;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2295,255,0 chrII 707491 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.86;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3679,393,0 chrII 708952 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.99;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3403,360,0 chrII 709875 . T G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.66;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4137,450,0 chrII 710109 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=147;Dels=0.00;FS=8.771;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.936;QD=22.29;ReadPosRankSum=3.362;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,141:147:99:3276,348,0 chrII 712022 . C G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;DP=163;Dels=0.00;FS=226.758;HaplotypeScore=12.7671;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-0.776;QD=1.02;ReadPosRankSum=-7.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,37:163:99:196,0,2243 chrII 715254 . G A 5217.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.0680;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.39;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5217,541,0 chrII 716467 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.78;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1612,168,0 chrII 716483 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.22;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1590,171,0 chrII 721088 . C T 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.291;QD=23.59;ReadPosRankSum=1.303;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2699,282,0 chrII 722169 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.78;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3400,352,0 chrII 722533 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2238,240,0 chrII 722589 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7688;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.11;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4230,442,0 chrII 723175 . G C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3917;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.80;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4488,483,0 chrII 724613 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=6.463;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.242;QD=24.38;ReadPosRankSum=1.695;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2300,252,0 chrII 725168 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=219;Dels=0.00;FS=2.981;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.854;QD=21.89;ReadPosRankSum=2.416;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:4793,531,0 chrII 725691 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=182;Dels=0.00;FS=5.481;HaplotypeScore=13.7140;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.257;QD=24.03;ReadPosRankSum=2.816;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:4374,474,0 chrII 729905 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2950,306,0 chrII 732123 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3115,330,0 chrII 732411 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.68;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2223,240,0 chrII 732636 . T G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.069;QD=24.10;ReadPosRankSum=1.658;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2298,243,0 chrII 734445 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.30;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4403,474,0 chrII 734775 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=23.82;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4311,477,0 chrII 737571 . T A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.28;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3476,369,0 chrII 739892 . T G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.588;QD=25.01;ReadPosRankSum=1.691;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4226,453,0 chrII 740827 . G A 5948.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5948,625,0 chrII 742721 . C G 1070 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1103,120,0 chrII 744063 . G A 5333.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.24;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5333,550,0 chrII 744147 . G C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.04;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3746,393,0 chrII 744252 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=20.9923;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.03;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5343,559,0 chrII 744342 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.82;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2926,309,0 chrII 744356 . A C 3140 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.13;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3173,345,0 chrII 744413 . G T 3113 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.64;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3146,327,0 chrII 744417 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.527;QD=19.10;ReadPosRankSum=1.711;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3146,339,0 chrII 744516 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.423;QD=20.85;ReadPosRankSum=1.405;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2723,291,0 chrII 744519 . A G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.291;QD=21.26;ReadPosRankSum=1.704;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2690,282,0 chrII 744640 . A T 2538 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.94;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2571,267,0 chrII 744816 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.13;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3154,333,0 chrII 744823 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.49;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3128,324,0 chrII 745190 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.30;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2896,312,0 chrII 745192 . C G 3043 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.21;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3076,324,0 chrII 745280 . C A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3777,397,0 chrII 745349 . G C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.23;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3438,381,0 chrII 745594 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.64;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3647,387,0 chrII 745793 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2614,270,0 chrII 746171 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.82;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3135,342,0 chrII 746478 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4011,438,0 chrII 746514 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3908,426,0 chrII 746583 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8846;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.28;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3812,399,0 chrII 746619 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0472;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.88;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3500,366,0 chrII 747177 . A T 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.584;QD=26.24;ReadPosRankSum=1.707;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3674,385,0 chrII 748042 . A G 2200 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.88;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2233,240,0 chrII 748066 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6459;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.209;QD=25.57;ReadPosRankSum=1.699;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2743,288,0 chrII 748404 . T C 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=266;Dels=0.00;FS=4.173;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.262;QD=21.41;ReadPosRankSum=1.719;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:5696,621,0 chrII 748514 . A C 4700.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.6283;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.82;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4700,519,0 chrII 748630 . C G 4562.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4562,484,0 chrII 749056 . C T 5501.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.81;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5501,574,0 chrII 749314 . C G 5131.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.32;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5131,558,0 chrII 749547 . C A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3474,358,0 chrII 749992 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=192;Dels=0.00;FS=2.933;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.022;QD=23.75;ReadPosRankSum=2.424;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4560,495,0 chrII 750067 . A T 5084.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.80;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5084,535,0 chrII 750088 . T C 5077.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.40;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5077,535,0 chrII 750157 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.25;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3807,402,0 chrII 750649 . A C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.40;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3440,375,0 chrII 750709 . A C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.451;QD=21.68;ReadPosRankSum=1.685;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3241,348,0 chrII 750714 . G T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.46;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3284,337,0 chrII 750883 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.06;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2039,213,0 chrII 750970 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=26.36;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1957,207,0 chrII 751225 . A C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;DP=62;Dels=0.00;FS=1.620;HaplotypeScore=48.6586;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-0.645;QD=0.28;ReadPosRankSum=-3.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,7:62:47:47,0,75 chrII 751226 . A C 65.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=63;Dels=0.00;FS=1.620;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=0.934;QD=1.03;ReadPosRankSum=3.870;SB=-5.550e+02 GT:AD:DP:GQ:PL 0/1:7,55:63:44:95,0,44 chrII 751317 . T C 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.409;QD=24.43;ReadPosRankSum=1.640;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1890,204,0 chrII 751854 . A G 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=117;Dels=0.00;FS=15.440;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=2.182;QD=23.19;ReadPosRankSum=3.262;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2746,309,0 chrII 751983 . T G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=2.950;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.423;QD=25.73;ReadPosRankSum=2.418;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3963,435,0 chrII 752106 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1977;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.69;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3970,444,0 chrII 752136 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=188;Dels=0.00;FS=6.736;HaplotypeScore=10.2269;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-0.274;QD=22.28;ReadPosRankSum=2.410;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:2,182:188:99:4188,450,0 chrII 752153 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=22.49;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4273,442,0 chrII 752266 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.290;QD=22.81;ReadPosRankSum=1.712;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3946,423,0 chrII 752292 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-1.579;QD=19.79;ReadPosRankSum=1.713;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3582,396,0 chrII 752329 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=5.338;HaplotypeScore=4.8732;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;MQRankSum=0.742;QD=14.66;ReadPosRankSum=1.685;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:2232,246,0 chrII 752333 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=14.38;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2175,234,0 chrII 752344 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3987;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=13.72;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2118,219,0 chrII 752361 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=15.33;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2516,267,0 chrII 752501 . G C 4394.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1516;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.88;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4394,480,0 chrII 752535 . A C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=3.471;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-1.732;QD=21.18;ReadPosRankSum=1.671;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3580,381,0 chrII 752538 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=162;Dels=0.00;FS=10.485;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=0.323;QD=21.37;ReadPosRankSum=2.907;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3462,375,0 chrII 752597 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.410;QD=21.31;ReadPosRankSum=1.699;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4433,489,0 chrII 752672 . T C 5081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=214;Dels=0.00;FS=6.374;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.063;QD=23.74;ReadPosRankSum=2.381;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5081,538,0 chrII 752718 . T C 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=229;Dels=0.00;FS=9.085;HaplotypeScore=15.2649;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.004;QD=21.65;ReadPosRankSum=3.377;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:4,225:229:99:4957,529,0 chrII 752744 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.16;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4985,540,0 chrII 752810 . T C 5028.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=249;Dels=0.00;FS=5.920;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.109;QD=20.19;ReadPosRankSum=2.932;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5028,535,0 chrII 752814 . G A 4771.01 SnpCluster AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.71;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4771,519,0 chrII 752817 . A G 4900.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=254;Dels=0.00;FS=3.369;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.921;QD=19.29;ReadPosRankSum=1.663;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:4900,520,0 chrII 752863 . A C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=219;Dels=0.00;FS=9.395;HaplotypeScore=9.9615;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.720;QD=19.57;ReadPosRankSum=2.922;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:4286,459,0 chrII 752916 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.2374;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.29;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4793,511,0 chrII 752933 . C T 4692.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.00;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4692,493,0 chrII 753131 . T A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.83;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3885,403,0 chrII 753144 . C G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=23.04;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3641,387,0 chrII 753196 . C A 2313 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.95;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2346,252,0 chrII 753198 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=16.76;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2396,249,0 chrII 753285 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.79;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2757,294,0 chrII 753573 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.030;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.363;QD=22.10;ReadPosRankSum=1.611;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1934,213,0 chrII 753610 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=67;Dels=0.00;FS=3.658;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.359;QD=20.78;ReadPosRankSum=1.679;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1425,156,0 chrII 753721 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.96;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1919,204,0 chrII 753723 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.02;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1862,201,0 chrII 753759 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1261,132,0 chrII 753909 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.06;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3064,339,0 chrII 753942 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3657;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.57;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2859,297,0 chrII 753990 . T C 3069 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.95;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3102,324,0 chrII 754103 . A T 3208 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3241,339,0 chrII 754139 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.43;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2845,294,0 chrII 754188 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.85;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2415,258,0 chrII 754197 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.79;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2299,249,0 chrII 754355 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.27;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2290,240,0 chrII 754404 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=24.65;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2227,237,0 chrII 754416 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.520;QD=23.24;ReadPosRankSum=1.602;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1892,201,0 chrII 754436 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.45;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1717,180,0 chrII 754776 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.44;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3492,384,0 chrII 754911 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2607;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.004;QD=22.71;ReadPosRankSum=1.600;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3611,396,0 chrII 755157 . G T 3134 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.74;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3167,336,0 chrII 755817 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.29;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2098,222,0 chrII 756042 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.93;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2850,303,0 chrII 756063 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.51;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2644,288,0 chrII 756114 . T A 2464 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.24;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2497,273,0 chrII 756213 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.56;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2648,282,0 chrII 756267 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=6.908;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.568;QD=23.04;ReadPosRankSum=2.408;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2775,297,0 chrII 756533 . C A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4460,463,0 chrII 757005 . A G 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.328;QD=21.26;ReadPosRankSum=2.345;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2031,216,0 chrII 757411 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=7.849;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.289;QD=23.13;ReadPosRankSum=2.349;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2300,243,0 chrII 757437 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.25;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2701,291,0 chrII 757513 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2654,282,0 chrII 757931 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.7330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3718,393,0 chrII 758975 . T G 2156 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.56;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2189,234,0 chrII 759402 . C A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.01;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3927,406,0 chrII 759424 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.22;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3377,357,0 chrII 760471 . A T 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.794;DP=171;Dels=0.00;FS=1.968;HaplotypeScore=9.5686;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.575;QD=20.95;ReadPosRankSum=2.246;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:3582,367,0 chrII 762267 . C T 5676.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.04;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5676,583,0 chrII 764397 . C A 2615 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2648,276,0 chrII 764475 . C A 2613 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.53;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2646,282,0 chrII 764689 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2043,219,0 chrII 767663 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=139;Dels=0.00;FS=6.115;HaplotypeScore=9.6456;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.067;QD=19.73;ReadPosRankSum=2.948;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:4,133:139:99:2776,300,0 chrII 767690 . A T 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.284;QD=20.50;ReadPosRankSum=1.577;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2780,294,0 chrII 767691 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9997;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.064;QD=20.15;ReadPosRankSum=1.527;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2753,297,0 chrII 767731 . T C 3147 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.70;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3180,336,0 chrII 767899 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.43;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3510,361,0 chrII 767991 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.325;QD=23.98;ReadPosRankSum=1.630;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2503,270,0 chrII 768165 . T A 2190 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.47;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2223,228,0 chrII 768196 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=16.60;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1859,195,0 chrII 768210 . C G 1508 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=13.59;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1541,165,0 chrII 768214 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=12.13;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1452,156,0 chrII 768260 . T G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=115;Dels=0.00;FS=5.450;HaplotypeScore=6.5380;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.360;QD=17.88;ReadPosRankSum=2.939;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2089,231,0 chrII 768374 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=24.51;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3383,354,0 chrII 769003 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4096,418,0 chrII 769150 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.5182;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.34;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4625,510,0 chrII 769258 . C T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4884,514,0 chrII 769303 . G C 4229.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.7387;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.49;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4229,471,0 chrII 769903 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3725,388,0 chrII 769972 . T A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3705,385,0 chrII 770543 . G T 2835 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.85;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2868,297,0 chrII 770771 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.299;QD=23.38;ReadPosRankSum=1.684;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5049,549,0 chrII 771838 . T A 2510 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.42;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2543,261,0 chrII 772129 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=3.020;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.633;QD=25.23;ReadPosRankSum=2.358;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2758,297,0 chrII 772302 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2614,279,0 chrII 772498 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2389,252,0 chrII 772534 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2534,270,0 chrII 772685 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.89;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2323,243,0 chrII 773042 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.0951;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.14;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3332,348,0 chrII 773188 . G C 2329 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.98;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2362,249,0 chrII 773200 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.94;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2359,258,0 chrII 773550 . G C 3865.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.09;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3865,408,0 chrII 773629 . G T 2506 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.18;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2539,258,0 chrII 773821 . T A 370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.456;QD=14.23;ReadPosRankSum=1.595;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:45:403,45,0 chrII 774509 . T C 771 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.70;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:804,87,0 chrII 774954 . T C 4932.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.94;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4932,546,0 chrII 775070 . T C 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.2556;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.562;QD=22.61;ReadPosRankSum=1.717;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5200,553,0 chrII 777303 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=202;Dels=0.00;FS=12.438;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.404;QD=22.39;ReadPosRankSum=3.382;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4523,495,0 chrII 778895 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.078;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.306;QD=24.11;ReadPosRankSum=1.626;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3191,342,0 chrII 779029 . A T 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.124;DP=121;Dels=0.00;FS=5.276;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.747;QD=20.25;ReadPosRankSum=3.342;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2483,270,0 chrII 780187 . A C 11050.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=465;Dels=0.00;FS=4.291;HaplotypeScore=38.5251;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.142;QD=23.76;ReadPosRankSum=1.717;SB=-4.457e+03 GT:AD:DP:GQ:PL 1/1:1,462:465:99:11050,1204,0 chrII 780392 . G A 1650.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.014;DP=361;Dels=0.01;FS=57.385;HaplotypeScore=618.0761;MLEAC=1;MLEAF=0.500;MQ=43.42;MQ0=1;MQRankSum=-5.388;QD=4.57;ReadPosRankSum=3.837;SB=-2.015e+03 GT:AD:DP:GQ:PL 0/1:50,309:359:99:1680,0,363 chrII 780395 . A G 1302.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;DP=373;Dels=0.01;FS=6.011;HaplotypeScore=144.9126;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=1;MQRankSum=-1.016;QD=3.49;ReadPosRankSum=11.283;SB=-1.440e+03 GT:AD:DP:GQ:PL 0/1:144,224:371:99:1332,0,913 chrII 780398 . G A 176.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;DP=358;Dels=0.00;FS=15.702;HaplotypeScore=155.0744;MLEAC=1;MLEAF=0.500;MQ=41.67;MQ0=1;MQRankSum=-4.163;QD=0.49;ReadPosRankSum=-6.969;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:262,96:358:99:206,0,1846 chrII 780416 . G A 2477 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.163;DP=340;Dels=0.01;FS=15.672;HaplotypeScore=187.8201;MLEAC=2;MLEAF=1.00;MQ=37.35;MQ0=1;MQRankSum=-0.364;QD=7.29;ReadPosRankSum=-3.115;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:26,310:336:99:2510,267,0 chrII 780419 . A G 529.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DP=346;Dels=0.01;FS=5.355;HaplotypeScore=156.0656;MLEAC=1;MLEAF=0.500;MQ=37.22;MQ0=1;MQRankSum=-1.129;QD=1.53;ReadPosRankSum=6.471;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:190,151:341:99:559,0,1409 chrII 780425 . A G 849.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DP=348;Dels=0.01;FS=3.135;HaplotypeScore=135.3595;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=0;MQRankSum=3.159;QD=2.44;ReadPosRankSum=8.356;SB=-1.050e+03 GT:AD:DP:GQ:PL 0/1:165,178:343:99:879,0,924 chrII 780431 . A G 186.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.323;DP=324;Dels=0.00;FS=3.518;HaplotypeScore=116.4157;MLEAC=1;MLEAF=0.500;MQ=40.64;MQ0=0;MQRankSum=-6.643;QD=0.57;ReadPosRankSum=-7.176;SB=-7.080e+02 GT:AD:DP:GQ:PL 0/1:211,112:324:99:216,0,1428 chrII 780434 . A G 87.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.278;DP=308;Dels=0.00;FS=10.659;HaplotypeScore=99.2816;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=0;MQRankSum=-5.474;QD=0.28;ReadPosRankSum=-10.323;SB=-4.050e+02 GT:AD:DP:GQ:PL 0/1:235,73:308:99:117,0,1608 chrII 780443 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.948;DP=280;Dels=0.00;FS=1.764;HaplotypeScore=115.0462;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=2.766;QD=7.68;ReadPosRankSum=1.578;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:28,252:280:99:2183,190,0 chrII 780545 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.789;QD=19.92;ReadPosRankSum=2.388;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4740,519,0 chrII 782605 . A T 6727.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.13;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6727,697,0 chrII 784284 . T A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3463,363,0 chrII 784375 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6011;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.16;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3312,363,0 chrII 784600 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0554;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.37;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2583,267,0 chrII 785333 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.159;QD=21.75;ReadPosRankSum=1.707;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3056,327,0 chrII 785852 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=24.6211;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.34;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2807,297,0 chrII 786053 . T C 2517 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.51;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2550,285,0 chrII 787277 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=3.863;HaplotypeScore=11.8721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.437;QD=23.85;ReadPosRankSum=1.652;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3157,336,0 chrII 788140 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2874,312,0 chrII 788369 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3138,339,0 chrII 789465 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.57;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4963,511,0 chrII 789530 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.63;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3899,420,0 chrII 790998 . T G 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=3.136;HaplotypeScore=16.1510;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.188;QD=23.33;ReadPosRankSum=1.716;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4922,531,0 chrII 791790 . C A 2094 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.52;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2127,228,0 chrII 795756 . C G 5300.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.0281;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.98;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5300,568,0 chrII 796648 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.89;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1063,114,0 chrII 798782 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.901;QD=25.81;ReadPosRankSum=1.704;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3259,348,0 chrII 799317 . A T 2271 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=26.41;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2304,237,0 chrII 799991 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2570,279,0 chrII 800115 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1735,186,0 chrII 800655 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.919;QD=23.89;ReadPosRankSum=1.653;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3186,339,0 chrII 800746 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.223;QD=25.59;ReadPosRankSum=1.708;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3711,396,0 chrII 800811 . A C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.38;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3754,394,0 chrII 800911 . A C 3126 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.56;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3159,336,0 chrII 801782 . C T 1935.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DP=279;Dels=0.00;FS=59.452;HaplotypeScore=22.7076;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=2;MQRankSum=-9.940;QD=6.94;ReadPosRankSum=-1.516;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:170,108:279:99:1965,0,3368 chrII 801947 . T G 3308.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.199;DP=297;Dels=0.00;FS=3.170;HaplotypeScore=19.6427;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-1.911;QD=11.14;ReadPosRankSum=0.575;SB=-1.709e+03 GT:AD:DP:GQ:PL 0/1:128,169:297:99:3308,0,2368 chrII 802086 . G C 2884.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;DP=285;Dels=0.00;FS=0.456;HaplotypeScore=13.9774;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=2.004;QD=10.12;ReadPosRankSum=-0.590;SB=-1.213e+03 GT:AD:DP:GQ:PL 0/1:132,150:285:99:2914,0,2469 chrII 802096 . T C 2241.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.2367;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=0.653;QD=8.42;ReadPosRankSum=0.009;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:142,123:266:99:2271,0,2842 chrII 802200 . A C 1682.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;DP=190;Dels=0.00;FS=10.751;HaplotypeScore=14.4397;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=0.406;QD=8.85;ReadPosRankSum=0.071;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:96,92:190:99:1712,0,1840 chrII 802257 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.18;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3917,423,0 chrII 802259 . G T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.41;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3839,417,0 chrII 802651 . A G 1196.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DP=131;Dels=0.00;FS=17.740;HaplotypeScore=5.5095;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=-0.436;QD=9.13;ReadPosRankSum=0.201;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:62,69:131:99:1226,0,1295 chrII 802654 . T G 1107.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DP=130;Dels=0.00;FS=20.363;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-2.410;QD=8.52;ReadPosRankSum=1.143;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1137,0,1283 chrII 802656 . T C 1019.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DP=134;Dels=0.00;FS=19.980;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=-1.255;QD=7.60;ReadPosRankSum=1.517;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:67,67:134:99:1049,0,1431 chrII 802702 . C T 1198.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;DP=147;Dels=0.00;FS=3.113;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=56.79;MQ0=0;MQRankSum=4.613;QD=8.15;ReadPosRankSum=0.220;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:81,66:147:99:1228,0,1366 chrII 803024 . T C 2829.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=348;Dels=0.00;FS=14.050;HaplotypeScore=23.4963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.850;QD=8.13;ReadPosRankSum=0.402;SB=-1.618e+03 GT:AD:DP:GQ:PL 0/1:187,159:348:99:2859,0,3706 chrII 803353 . A T 2171.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;DP=270;Dels=0.00;FS=4.817;HaplotypeScore=12.3627;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-1.110;QD=8.04;ReadPosRankSum=0.299;SB=-1.308e+03 GT:AD:DP:GQ:PL 0/1:140,130:270:99:2201,0,2642 chrII 803355 . C G 2118.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=274;Dels=0.00;FS=3.292;HaplotypeScore=10.6034;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=0.162;QD=7.73;ReadPosRankSum=0.068;SB=-1.436e+03 GT:AD:DP:GQ:PL 0/1:140,133:274:99:2148,0,2520 chrII 803356 . A T 2253.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;DP=274;Dels=0.00;FS=1.447;HaplotypeScore=9.8147;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-2.932;QD=8.22;ReadPosRankSum=0.078;SB=-1.521e+03 GT:AD:DP:GQ:PL 0/1:139,135:274:99:2283,0,2605 chrII 803377 . A T 2439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.983;DP=305;Dels=0.00;FS=0.419;HaplotypeScore=18.2541;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-0.780;QD=8.00;ReadPosRankSum=0.202;SB=-1.380e+03 GT:AD:DP:GQ:PL 0/1:147,158:305:99:2469,0,2598 chrII 803493 . C G 2688.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=285;Dels=0.00;FS=7.240;HaplotypeScore=24.2681;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-0.965;QD=9.43;ReadPosRankSum=-0.545;SB=-1.151e+03 GT:AD:DP:GQ:PL 0/1:142,141:285:99:2718,0,2693 chrII 803737 . C T 2690.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.044;DP=290;Dels=0.00;FS=7.083;HaplotypeScore=14.0321;MLEAC=1;MLEAF=0.500;MQ=55.73;MQ0=0;MQRankSum=-2.735;QD=9.28;ReadPosRankSum=0.047;SB=-1.554e+03 GT:AD:DP:GQ:PL 0/1:139,150:290:99:2720,0,2669 chrII 803935 . G A 1340.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=-10.897;QD=6.04;ReadPosRankSum=-2.217;SB=-1.424e+03 GT:AD:DP:GQ:PL 0/1:98,124:222:99:1370,0,1863 chrII 803936 . A T 1312.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.118;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=-10.813;QD=5.91;ReadPosRankSum=-2.642;SB=-1.423e+03 GT:AD:DP:GQ:PL 0/1:98,124:222:99:1342,0,1969 chrII 803945 . G A 1124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.335;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=96.5177;MLEAC=1;MLEAF=0.500;MQ=46.57;MQ0=0;MQRankSum=-12.151;QD=4.70;ReadPosRankSum=-3.437;SB=-1.444e+03 GT:AD:DP:GQ:PL 0/1:106,132:239:99:1154,0,2016 chrII 803948 . G T 973.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DP=235;Dels=0.00;FS=0.477;HaplotypeScore=94.1517;MLEAC=1;MLEAF=0.500;MQ=46.81;MQ0=0;MQRankSum=-12.471;QD=4.14;ReadPosRankSum=-2.567;SB=-1.323e+03 GT:AD:DP:GQ:PL 0/1:110,124:235:99:1003,0,2025 chrII 803960 . T C 461.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DP=246;Dels=0.00;FS=0.982;HaplotypeScore=8.5113;MLEAC=1;MLEAF=0.500;MQ=46.76;MQ0=0;MQRankSum=-13.496;QD=1.87;ReadPosRankSum=-1.563;SB=-1.199e+03 GT:AD:DP:GQ:PL 0/1:120,124:246:99:491,0,2328 chrII 803963 . A G 517.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;DP=248;Dels=0.00;FS=4.339;HaplotypeScore=5.3566;MLEAC=1;MLEAF=0.500;MQ=46.89;MQ0=0;MQRankSum=-13.581;QD=2.08;ReadPosRankSum=-1.435;SB=-1.216e+03 GT:AD:DP:GQ:PL 0/1:122,126:248:99:547,0,2401 chrII 803966 . A G 558.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DP=245;Dels=0.00;FS=5.217;HaplotypeScore=5.3566;MLEAC=1;MLEAF=0.500;MQ=46.70;MQ0=0;MQRankSum=-13.494;QD=2.28;ReadPosRankSum=-1.676;SB=-1.303e+03 GT:AD:DP:GQ:PL 0/1:119,126:245:99:588,0,2394 chrII 803972 . A C 470.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.872;DP=243;Dels=0.00;FS=6.150;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=0;MQRankSum=-13.445;QD=1.93;ReadPosRankSum=-1.338;SB=-1.224e+03 GT:AD:DP:GQ:PL 0/1:120,122:243:99:500,0,2372 chrII 803975 . C T 204.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DP=215;Dels=0.00;FS=3.149;HaplotypeScore=8.8110;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=-12.363;QD=0.95;ReadPosRankSum=2.599;SB=-8.580e+02 GT:AD:DP:GQ:PL 0/1:121,93:215:99:234,0,2386 chrII 803977 . T G 208.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;DP=217;Dels=0.00;FS=2.408;HaplotypeScore=8.0770;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=0;MQRankSum=-12.560;QD=0.96;ReadPosRankSum=3.009;SB=-8.430e+02 GT:AD:DP:GQ:PL 0/1:124,92:217:99:238,0,2646 chrII 803978 . T C 222.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;DP=216;Dels=0.00;FS=2.408;HaplotypeScore=7.2883;MLEAC=1;MLEAF=0.500;MQ=49.24;MQ0=0;MQRankSum=-12.560;QD=1.03;ReadPosRankSum=3.046;SB=-8.620e+02 GT:AD:DP:GQ:PL 0/1:124,92:216:99:252,0,2564 chrII 803981 . C T 254.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;DP=218;Dels=0.00;FS=3.967;HaplotypeScore=6.4996;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=0;MQRankSum=-11.965;QD=1.17;ReadPosRankSum=1.915;SB=-8.730e+02 GT:AD:DP:GQ:PL 0/1:121,96:218:99:284,0,2436 chrII 803983 . A G 258.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DP=218;Dels=0.00;FS=3.159;HaplotypeScore=6.4449;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=0;MQRankSum=-12.314;QD=1.18;ReadPosRankSum=2.286;SB=-8.670e+02 GT:AD:DP:GQ:PL 0/1:124,94:218:99:288,0,2503 chrII 803984 . A C 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;DP=219;Dels=0.00;FS=1.715;HaplotypeScore=6.4449;MLEAC=1;MLEAF=0.500;MQ=49.41;MQ0=0;MQRankSum=-12.140;QD=1.08;ReadPosRankSum=1.992;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:125,94:219:99:267,0,2581 chrII 803987 . G C 241.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;DP=255;Dels=0.00;FS=5.266;HaplotypeScore=8.8110;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=0;MQRankSum=-13.405;QD=0.95;ReadPosRankSum=-1.665;SB=-1.138e+03 GT:AD:DP:GQ:PL 0/1:127,127:255:99:271,0,2470 chrII 803993 . C T 441.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;DP=270;Dels=0.00;FS=4.262;HaplotypeScore=11.1770;MLEAC=1;MLEAF=0.500;MQ=48.19;MQ0=0;MQRankSum=-12.505;QD=1.63;ReadPosRankSum=-2.180;SB=-1.226e+03 GT:AD:DP:GQ:PL 0/1:129,140:270:99:471,0,2457 chrII 804707 . A G 7237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=301;Dels=0.00;FS=5.993;HaplotypeScore=24.1750;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-1.580;QD=24.04;ReadPosRankSum=2.942;SB=-3.791e+03 GT:AD:DP:GQ:PL 1/1:3,293:301:99:7237,772,0 chrII 805115 . C T 3957.01 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=13;QD=18.49;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:3957,432,0 chrII 805314 . C G 1899.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DP=197;Dels=0.00;FS=1.140;HaplotypeScore=8.7668;MLEAC=1;MLEAF=0.500;MQ=36.05;MQ0=8;MQRankSum=0.798;QD=9.64;ReadPosRankSum=-1.077;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:95,100:197:99:1929,0,1758 chrII 805343 . A T 4154.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=179;Dels=0.00;FS=3.021;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=11;MQRankSum=-1.133;QD=23.21;ReadPosRankSum=2.303;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4154,439,0 chrII 806932 . G C 2774.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.443;DP=286;Dels=0.00;FS=4.926;HaplotypeScore=12.6427;MLEAC=1;MLEAF=0.500;MQ=46.26;MQ0=19;MQRankSum=1.304;QD=9.70;ReadPosRankSum=0.567;SB=-1.355e+03 GT:AD:DP:GQ:PL 0/1:126,157:286:99:2804,0,2047 chrII 807206 . A G 1834 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=150;Dels=0.00;FS=9.760;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=27;MQRankSum=-2.329;QD=12.23;ReadPosRankSum=2.409;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,147:150:99:1867,207,0 chrII 807871 . G A 3049.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.165;DP=331;Dels=0.00;FS=6.432;HaplotypeScore=23.4963;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=1.022;QD=9.21;ReadPosRankSum=-2.433;SB=-1.563e+03 GT:AD:DP:GQ:PL 0/1:165,165:331:99:3079,0,3232 chrII 808450 . G A 1670.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.171;QD=9.94;ReadPosRankSum=-0.054;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:88,77:168:99:1700,0,1975 chrII 809040 . A C 562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.339;DP=197;Dels=0.00;FS=19.095;HaplotypeScore=6.6184;MLEAC=1;MLEAF=0.500;MQ=18.61;MQ0=43;MQRankSum=-1.373;QD=2.85;ReadPosRankSum=1.018;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,110:197:99:592,0,566 chrII 809089 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.885;DP=277;Dels=0.00;FS=401.835;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=14.66;MQ0=92;MQRankSum=-3.154;QD=0.16;ReadPosRankSum=0.667;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:203,72:277:73:73,0,823 chrII 809092 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.618;DP=277;Dels=0.00;FS=390.803;HaplotypeScore=16.5076;MLEAC=1;MLEAF=0.500;MQ=14.56;MQ0=94;MQRankSum=-3.149;QD=0.15;ReadPosRankSum=1.572;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:205,71:277:72:72,0,800 chrII 809113 . C T 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.289;DP=305;Dels=0.00;FS=150.781;HaplotypeScore=14.8208;MLEAC=1;MLEAF=0.500;MQ=13.83;MQ0=135;MQRankSum=0.070;QD=2.56;ReadPosRankSum=0.592;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:90,212:305:99:812,0,115 chrII 809158 . T G 1366 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.797;DP=244;Dels=0.00;FS=89.979;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=15.91;MQ0=113;MQRankSum=2.267;QD=5.60;ReadPosRankSum=2.306;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:49,195:244:99:1399,165,0 chrII 809220 . T C 3033 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=9;MQRankSum=-0.917;QD=20.49;ReadPosRankSum=2.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,143:148:99:3066,336,0 chrII 809299 . C T 1019.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.930;DP=225;Dels=0.00;FS=368.300;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=51;MQRankSum=2.329;QD=4.53;ReadPosRankSum=-2.453;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:104,121:225:99:1049,0,728 chrII 809444 . T A 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=157;Dels=0.00;FS=52.741;HaplotypeScore=12.9644;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=4;MQRankSum=-0.318;QD=0.64;ReadPosRankSum=1.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,27:157:99:131,0,1809 chrII 809557 . C T 878.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DP=109;Dels=0.00;FS=1.062;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=21;MQRankSum=0.768;QD=8.06;ReadPosRankSum=-1.982;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:57,51:109:99:908,0,825 chrII 809618 . T A 640.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=75;Dels=0.00;FS=2.427;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=36.18;MQ0=22;MQRankSum=-0.984;QD=8.53;ReadPosRankSum=1.236;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:30,45:75:99:670,0,322 chrII 809636 . C T 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=40.92;MQ0=13;MQRankSum=1.474;QD=4.01;ReadPosRankSum=-1.751;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:45,37:83:99:363,0,796 chrII 809791 . T C 541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=132;Dels=0.01;FS=9.592;HaplotypeScore=78.7161;MLEAC=1;MLEAF=0.500;MQ=38.56;MQ0=13;MQRankSum=-5.598;QD=4.10;ReadPosRankSum=-0.052;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:72,59:131:99:571,0,1031 chrII 809833 . G A 491.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;DP=118;Dels=0.00;FS=4.346;HaplotypeScore=4.7671;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=32;MQRankSum=2.587;QD=4.16;ReadPosRankSum=-0.074;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:55,63:118:99:521,0,217 chrII 810077 . T C 526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=433;Dels=0.00;FS=97.447;HaplotypeScore=12.0247;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=34;MQRankSum=-9.235;QD=1.21;ReadPosRankSum=0.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:357,74:432:99:556,0,6726 chrII 810159 . C T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.918;DP=316;Dels=0.00;FS=54.324;HaplotypeScore=10.3505;MLEAC=1;MLEAF=0.500;MQ=45.06;MQ0=1;MQRankSum=-3.198;QD=0.12;ReadPosRankSum=-3.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,38:316:68:68,0,5613 chrII 810163 . G A 261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.868;DP=316;Dels=0.00;FS=55.538;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=44.54;MQ0=1;MQRankSum=-1.787;QD=0.83;ReadPosRankSum=-2.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:273,43:316:99:291,0,5445 chrII 810165 . G A 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DP=314;Dels=0.00;FS=57.171;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=44.15;MQ0=1;MQRankSum=-3.008;QD=0.75;ReadPosRankSum=-3.003;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,47:314:99:266,0,5189 chrII 810206 . G A 487.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DP=314;Dels=0.00;FS=5.651;HaplotypeScore=30.6836;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=1;MQRankSum=-7.395;QD=1.55;ReadPosRankSum=-3.895;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:242,72:314:99:517,0,4364 chrII 810207 . G A 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DP=316;Dels=0.00;FS=21.837;HaplotypeScore=31.6305;MLEAC=1;MLEAF=0.500;MQ=37.54;MQ0=1;MQRankSum=-6.941;QD=0.38;ReadPosRankSum=-1.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:261,55:316:99:150,0,4791 chrII 810212 . T C 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.414;DP=320;Dels=0.00;FS=20.096;HaplotypeScore=25.5486;MLEAC=1;MLEAF=0.500;MQ=36.91;MQ0=1;MQRankSum=-7.811;QD=0.66;ReadPosRankSum=-2.690;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:257,63:320:99:242,0,4964 chrII 810213 . C T 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.076;DP=325;Dels=0.00;FS=18.081;HaplotypeScore=25.5486;MLEAC=1;MLEAF=0.500;MQ=37.35;MQ0=1;MQRankSum=-7.702;QD=0.53;ReadPosRankSum=-2.434;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:262,63:325:99:202,0,4603 chrII 810216 . G T 291.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.285;DP=349;Dels=0.00;FS=45.448;HaplotypeScore=20.7523;MLEAC=1;MLEAF=0.500;MQ=37.14;MQ0=2;MQRankSum=-8.411;QD=0.83;ReadPosRankSum=-4.082;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:270,76:349:99:321,0,5100 chrII 810221 . C G 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;DP=374;Dels=0.00;FS=47.772;HaplotypeScore=10.9499;MLEAC=1;MLEAF=0.500;MQ=36.50;MQ0=12;MQRankSum=-8.406;QD=0.94;ReadPosRankSum=-4.398;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:283,89:374:99:380,0,5299 chrII 810340 . C T 976 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=30;QD=8.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,91:122:99:1009,111,0 chrII 810344 . A G 728 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=30;MQRankSum=-3.348;QD=7.51;ReadPosRankSum=3.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:33,64:97:84:761,84,0 chrII 810350 . A G 366 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.85;MQ0=33;MQRankSum=-1.732;QD=4.46;ReadPosRankSum=1.662;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,48:82:45:399,45,0 chrII 810351 . G A 387 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.31;MQ0=34;QD=4.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:33,48:82:45:420,45,0 chrII 810353 . A T 383 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.22;MQ0=35;QD=4.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,49:83:45:416,45,0 chrII 810363 . G A 78.51 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=11.14;MQ0=36;QD=0.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:36,45:81:12:111,12,0 chrII 810373 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.62;MQ0=40;MQRankSum=2.215;QD=0.16;ReadPosRankSum=1.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,2:82:39:43,0,39 chrII 810394 . T C 82.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.584;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=44;MQRankSum=0.830;QD=1.02;ReadPosRankSum=-0.611;SB=2.60 GT:AD:DP:GQ:PL 1/1:66,15:81:12:115,12,0 chrII 810411 . G A 134.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.42;MQ0=42;QD=1.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:39,43:82:18:167,18,0 chrII 810414 . A G 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.26;MQ0=42;MQRankSum=-1.395;QD=0.90;ReadPosRankSum=1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:40,43:83:12:107,12,0 chrII 810417 . G C 86.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.85;MQ0=43;QD=1.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:39,46:86:12:119,12,0 chrII 810420 . A G 131.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.55;MQ0=41;QD=1.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,50:88:18:164,18,0 chrII 810461 . T C 282 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.35;MQ0=43;QD=2.85;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:36,63:99:36:315,36,0 chrII 810487 . G A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.46;MQ0=60;MQRankSum=-1.851;QD=0.64;ReadPosRankSum=-3.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,30:103:96:96,0,143 chrII 810491 . A T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.56;MQ0=65;MQRankSum=-1.943;QD=0.16;ReadPosRankSum=-2.873;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,29:105:47:47,0,153 chrII 810515 . G A 94.26 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=7.72;MQ0=85;QD=0.93;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:65,35:101:15:127,15,0 chrIII 160 . A C 261.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=174;Dels=0.02;FS=8.589;HaplotypeScore=89.7549;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=15;MQRankSum=-1.961;QD=1.50;ReadPosRankSum=-0.878;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,56:171:99:291,0,907 chrIII 377 . A T 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;DP=286;Dels=0.02;FS=39.466;HaplotypeScore=345.4039;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=9;MQRankSum=1.020;QD=0.74;ReadPosRankSum=-0.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,32:280:75:241,0,75 chrIII 422 . T C 98.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DP=225;Dels=0.00;FS=6.136;HaplotypeScore=253.9389;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=0;MQRankSum=0.441;QD=0.44;ReadPosRankSum=-1.984;SB=-1.174e+03 GT:AD:DP:GQ:PL 0/1:82,142:225:99:128,0,913 chrIII 458 . T C 337.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;DP=128;Dels=0.00;FS=41.882;HaplotypeScore=87.9095;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=3;MQRankSum=3.701;QD=2.63;ReadPosRankSum=-3.706;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:64,63:128:99:367,0,847 chrIII 467 . C T 204.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DP=113;Dels=0.00;FS=2.689;HaplotypeScore=92.9660;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=3;MQRankSum=3.179;QD=1.81;ReadPosRankSum=0.630;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:64,49:113:99:234,0,759 chrIII 468 . G A 310.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DP=118;Dels=0.00;FS=3.885;HaplotypeScore=105.6210;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=3;MQRankSum=0.844;QD=2.63;ReadPosRankSum=-2.095;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:47,65:118:99:340,0,634 chrIII 591 . C G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;DP=290;Dels=0.00;FS=162.532;HaplotypeScore=37.5988;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=3;MQRankSum=0.849;QD=0.10;ReadPosRankSum=-0.008;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,103:290:58:58,0,2427 chrIII 601 . G A 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;DP=269;Dels=0.00;FS=114.547;HaplotypeScore=19.7502;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=6;MQRankSum=1.893;QD=0.43;ReadPosRankSum=-0.045;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:159,110:269:99:145,0,1932 chrIII 632 . C T 408.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DP=159;Dels=0.00;FS=40.954;HaplotypeScore=25.7337;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=13;MQRankSum=-0.114;QD=2.57;ReadPosRankSum=4.115;SB=-3.867e+02 GT:AD:DP:GQ:PL 0/1:45,114:159:99:438,0,196 chrIII 633 . T A 384.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DP=165;Dels=0.00;FS=31.720;HaplotypeScore=25.7337;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=13;MQRankSum=-0.410;QD=2.33;ReadPosRankSum=4.648;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:48,117:165:99:414,0,200 chrIII 640 . G A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DP=178;Dels=0.00;FS=77.511;HaplotypeScore=34.1485;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=13;MQRankSum=2.105;QD=0.16;ReadPosRankSum=0.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,17:178:58:58,0,761 chrIII 651 . A G 241.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DP=223;Dels=0.00;FS=76.587;HaplotypeScore=103.5029;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=13;MQRankSum=1.188;QD=1.08;ReadPosRankSum=-2.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,40:223:99:271,0,1806 chrIII 656 . C T 652.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;DP=238;Dels=0.01;FS=43.295;HaplotypeScore=147.6968;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=13;MQRankSum=-3.366;QD=2.74;ReadPosRankSum=4.460;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:118,118:236:99:682,0,1354 chrIII 658 . T C 1609.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DP=254;Dels=0.01;FS=26.043;HaplotypeScore=158.1847;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=13;MQRankSum=-1.797;QD=6.33;ReadPosRankSum=2.090;SB=-8.890e+02 GT:AD:DP:GQ:PL 0/1:79,171:252:99:1639,0,541 chrIII 666 . T C 685.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=300;Dels=0.00;FS=302.520;HaplotypeScore=146.9930;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=15;MQRankSum=5.279;QD=2.28;ReadPosRankSum=2.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,70:300:99:715,0,2329 chrIII 674 . C T 473.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DP=379;Dels=0.00;FS=199.206;HaplotypeScore=70.7066;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=15;MQRankSum=5.462;QD=1.25;ReadPosRankSum=1.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:311,68:379:99:503,0,3307 chrIII 690 . A G 910.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.169;DP=484;Dels=0.00;FS=294.206;HaplotypeScore=348.1411;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=11;MQRankSum=1.321;QD=1.88;ReadPosRankSum=6.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:402,79:484:99:940,0,3280 chrIII 706 . T A 819.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DP=539;Dels=0.00;FS=500.462;HaplotypeScore=65.5619;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=4;MQRankSum=2.142;QD=1.52;ReadPosRankSum=-7.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:367,163:539:99:849,0,5553 chrIII 717 . T A 806.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DP=575;Dels=0.00;FS=480.408;HaplotypeScore=35.2298;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=7;MQRankSum=1.789;QD=1.40;ReadPosRankSum=-5.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:394,180:574:99:836,0,6457 chrIII 723 . C A 340.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;DP=561;Dels=0.00;FS=434.132;HaplotypeScore=19.8624;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=7;MQRankSum=0.883;QD=0.61;ReadPosRankSum=-1.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:394,165:561:99:370,0,6389 chrIII 724 . G T 278.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.491;DP=563;Dels=0.00;FS=422.737;HaplotypeScore=20.6076;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=7;MQRankSum=1.432;QD=0.49;ReadPosRankSum=-0.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:396,165:563:99:308,0,6270 chrIII 726 . T G 276.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210;DP=563;Dels=0.00;FS=437.829;HaplotypeScore=23.7421;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=7;MQRankSum=0.742;QD=0.49;ReadPosRankSum=0.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:397,165:563:99:306,0,6546 chrIII 879 . G C 4911.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.908;DP=334;Dels=0.00;FS=7.616;HaplotypeScore=16.2135;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=18;MQRankSum=1.993;QD=14.70;ReadPosRankSum=1.264;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:13,320:334:99:4911,463,0 chrIII 885 . C A 1775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.761;DP=340;Dels=0.00;FS=66.198;HaplotypeScore=26.3843;MLEAC=1;MLEAF=0.500;MQ=25.90;MQ0=17;MQRankSum=1.894;QD=5.22;ReadPosRankSum=2.448;SB=-9.480e+02 GT:AD:DP:GQ:PL 0/1:193,147:340:99:1805,0,2136 chrIII 901 . C T 1814.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.125;DP=296;Dels=0.00;FS=59.064;HaplotypeScore=12.6329;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=10;MQRankSum=0.066;QD=6.13;ReadPosRankSum=2.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,162:296:99:1844,0,1364 chrIII 915 . T C 1758.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;DP=249;Dels=0.00;FS=69.277;HaplotypeScore=28.8635;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=10;MQRankSum=0.781;QD=7.06;ReadPosRankSum=4.864;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,152:249:99:1788,0,689 chrIII 920 . C T 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;DP=218;Dels=0.00;FS=14.976;HaplotypeScore=35.3627;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=9;MQRankSum=1.150;QD=0.46;ReadPosRankSum=-1.414;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:178,39:218:99:130,0,1902 chrIII 924 . C T 1570.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;DP=192;Dels=0.00;FS=43.856;HaplotypeScore=30.4377;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=8;MQRankSum=3.710;QD=8.18;ReadPosRankSum=7.177;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,124:192:99:1600,0,178 chrIII 925 . G T 1558.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.434;DP=193;Dels=0.00;FS=45.346;HaplotypeScore=30.4377;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=7;MQRankSum=4.727;QD=8.07;ReadPosRankSum=6.859;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,126:193:99:1588,0,151 chrIII 929 . A G 2149 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=19.7753;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=4;MQRankSum=-1.912;QD=12.28;ReadPosRankSum=3.736;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:5,170:175:99:2182,237,0 chrIII 930 . C T 2091 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.860;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.8114;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=4;MQRankSum=2.058;QD=12.30;ReadPosRankSum=-0.005;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:5,158:170:99:2124,212,0 chrIII 931 . A C,T 1909.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3503;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.46;MQ0=4;QD=10.97;SB=-6.602e+01 GT:AD:DP:GQ:PL 1/2:0,37,137:174:58:1969,1713,1677,256,0,58 chrIII 947 . C A 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=187;Dels=0.00;FS=20.384;HaplotypeScore=54.1541;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=7;MQRankSum=0.061;QD=0.77;ReadPosRankSum=-2.324;SB=-9.875e+01 GT:AD:DP:GQ:PL 0/1:156,31:187:99:174,0,1921 chrIII 951 . C T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.491;DP=178;Dels=0.00;FS=8.796;HaplotypeScore=32.3130;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=6;MQRankSum=-0.294;QD=0.59;ReadPosRankSum=-3.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,26:178:99:135,0,1954 chrIII 978 . A G 1183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;DP=193;Dels=0.00;FS=1.828;HaplotypeScore=22.7187;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=8;MQRankSum=-3.671;QD=6.13;ReadPosRankSum=1.140;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:59,113:193:99:1213,0,941 chrIII 1023 . A T 586.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;DP=213;Dels=0.00;FS=29.666;HaplotypeScore=32.9242;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=5;MQRankSum=-6.760;QD=2.75;ReadPosRankSum=-1.720;SB=-5.510e+02 GT:AD:DP:GQ:PL 0/1:108,105:213:99:616,0,2050 chrIII 1034 . C T 454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;DP=204;Dels=0.00;FS=40.715;HaplotypeScore=83.5275;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=4;MQRankSum=-6.160;QD=2.23;ReadPosRankSum=-2.255;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:104,99:204:99:484,0,1859 chrIII 1040 . T C 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.281;DP=211;Dels=0.00;FS=61.250;HaplotypeScore=73.0373;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=4;MQRankSum=-1.255;QD=1.10;ReadPosRankSum=4.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,25:211:99:263,0,2031 chrIII 1070 . T C 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DP=176;Dels=0.00;FS=12.370;HaplotypeScore=134.7900;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=8;MQRankSum=-5.212;QD=2.02;ReadPosRankSum=0.615;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:128,48:176:99:386,0,1037 chrIII 1095 . C T 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;DP=122;Dels=0.00;FS=213.117;HaplotypeScore=13.6082;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=8;MQRankSum=3.670;QD=1.51;ReadPosRankSum=0.969;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,59:122:99:214,0,625 chrIII 1097 . C G 200.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=118;Dels=0.00;FS=211.756;HaplotypeScore=12.8195;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=8;MQRankSum=3.782;QD=1.69;ReadPosRankSum=1.618;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:59,59:118:99:230,0,531 chrIII 1099 . A C 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;DP=117;Dels=0.00;FS=208.418;HaplotypeScore=11.7882;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=8;MQRankSum=3.591;QD=1.84;ReadPosRankSum=2.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,59:117:99:245,0,423 chrIII 1108 . C G 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;DP=124;Dels=0.00;FS=214.031;HaplotypeScore=8.2105;MLEAC=1;MLEAF=0.500;MQ=25.35;MQ0=7;MQRankSum=6.452;QD=1.75;ReadPosRankSum=2.203;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:46,77:124:99:247,0,294 chrIII 1109 . T A 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;DP=125;Dels=0.00;FS=235.467;HaplotypeScore=8.2105;MLEAC=1;MLEAF=0.500;MQ=25.21;MQ0=7;MQRankSum=6.080;QD=3.06;ReadPosRankSum=1.502;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:41,84:125:99:412,0,151 chrIII 1114 . C T 276.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;DP=136;Dels=0.00;FS=193.130;HaplotypeScore=10.2064;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=6;MQRankSum=6.411;QD=2.03;ReadPosRankSum=2.634;SB=-3.802e+01 GT:AD:DP:GQ:PL 0/1:44,92:136:99:306,0,256 chrIII 1116 . C T 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;DP=134;Dels=0.00;FS=202.023;HaplotypeScore=9.0035;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=6;MQRankSum=7.120;QD=2.45;ReadPosRankSum=2.593;SB=-4.102e+01 GT:AD:DP:GQ:PL 0/1:41,92:134:99:358,0,184 chrIII 1121 . A G 378.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=136;Dels=0.00;FS=192.421;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=6;MQRankSum=7.060;QD=2.78;ReadPosRankSum=4.668;SB=-9.302e+01 GT:AD:DP:GQ:PL 0/1:39,95:136:99:408,0,150 chrIII 1132 . G T 866 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=128;Dels=0.00;FS=92.612;HaplotypeScore=15.0114;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=5;MQRankSum=5.520;QD=6.77;ReadPosRankSum=3.923;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:17,107:128:72:899,72,0 chrIII 2298 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.144;QD=25.32;ReadPosRankSum=1.681;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:5215,529,0 chrIII 2652 . C T 5132.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.2941;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.03;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5132,511,0 chrIII 2869 . A G 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=3.053;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.463;QD=25.25;ReadPosRankSum=1.682;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:5201,523,0 chrIII 3240 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.57;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4791,472,0 chrIII 3939 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.9805;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3247,336,0 chrIII 4489 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.87;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2468,252,0 chrIII 4490 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.07;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2512,252,0 chrIII 4794 . T G 1440 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=20;QD=18.95;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1473,153,0 chrIII 6007 . G T 4595.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=1;QD=24.84;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4595,469,0 chrIII 6041 . A C 4453.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=1;QD=24.60;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4453,460,0 chrIII 6279 . C T 2107 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=8;QD=20.86;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2140,216,0 chrIII 6337 . G A 169.06 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=15.66;MQ0=10;QD=3.93;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:21:202,21,0 chrIII 6371 . G C 888 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=4;QD=13.45;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:90:921,90,0 chrIII 6401 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=3;QD=20.55;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1595,159,0 chrIII 6489 . A G 2947 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=142;Dels=0.00;FS=6.990;HaplotypeScore=8.3314;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=26;MQRankSum=1.280;QD=20.75;ReadPosRankSum=-0.738;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2980,309,0 chrIII 6540 . A G 1771 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0499;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=20;QD=16.40;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1804,183,0 chrIII 6715 . C T 5543.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=23.89;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5543,580,0 chrIII 7220 . A C 2510 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=8;QD=17.07;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2543,270,0 chrIII 7221 . A G 2510 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=7;MQRankSum=1.075;QD=17.07;ReadPosRankSum=1.707;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2543,270,0 chrIII 7544 . G A 1345 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.7647;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=8;QD=16.60;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1378,147,0 chrIII 7958 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=2.855;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=0.670;QD=22.55;ReadPosRankSum=2.413;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3055,312,0 chrIII 8031 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=23.79;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2888,289,0 chrIII 8254 . G A 1045 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=6;QD=13.75;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1078,114,0 chrIII 8528 . T C 1706 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=5;QD=23.05;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1739,180,0 chrIII 8572 . T C 1005 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=29.3580;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=7;QD=16.21;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1038,105,0 chrIII 8584 . A T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=55;Dels=0.00;FS=3.115;HaplotypeScore=4.8845;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=8;MQRankSum=3.074;QD=0.38;ReadPosRankSum=-3.295;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:43,12:55:30:51,0,30 chrIII 8587 . A T 46.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=57;Dels=0.00;FS=3.753;HaplotypeScore=62.1908;MLEAC=1;MLEAF=0.500;MQ=39.50;MQ0=8;MQRankSum=-2.205;QD=0.81;ReadPosRankSum=3.584;SB=-5.342e+01 GT:AD:DP:GQ:PL 0/1:11,46:57:7:76,0,7 chrIII 8947 . T G 3578.01 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=12;QD=21.68;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3578,367,0 chrIII 9136 . G A 728 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=4;QD=10.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:81:761,81,0 chrIII 9461 . G T 820 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=13;QD=13.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:60:93:853,93,0 chrIII 9739 . A G 3650.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=183;Dels=0.00;FS=5.597;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=25;MQRankSum=-0.844;QD=19.95;ReadPosRankSum=1.710;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3650,390,0 chrIII 10348 . A G 82.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=12;MQRankSum=-0.736;QD=4.58;ReadPosRankSum=0.736;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:12:115,12,0 chrIII 11126 . T C 1515 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=5;QD=22.61;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1548,159,0 chrIII 11775 . G T 180.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=2;QD=16.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:11:21:213,21,0 chrIII 14139 . G T 2558 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=25.08;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2591,261,0 chrIII 14191 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.76;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2274,228,0 chrIII 14356 . A T 785 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:818,90,0 chrIII 14594 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.21;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1949,195,0 chrIII 14631 . T A 1964 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.25;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1997,198,0 chrIII 15512 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3313,360,0 chrIII 16356 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.73;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3489,363,0 chrIII 17635 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=210;Dels=0.00;FS=3.501;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.891;QD=22.32;ReadPosRankSum=-0.353;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4688,463,0 chrIII 18173 . G A 5803.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5803,568,0 chrIII 18736 . G C 1039 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1072,111,0 chrIII 23149 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.9752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.687;QD=24.97;ReadPosRankSum=1.710;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3846,388,0 chrIII 23755 . A T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=28.16;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4112,412,0 chrIII 25689 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4855,502,0 chrIII 25808 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4334,427,0 chrIII 30865 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1857,183,0 chrIII 32816 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.22;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4327,436,0 chrIII 33569 . A C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.784;QD=24.65;ReadPosRankSum=1.691;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4166,427,0 chrIII 34008 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0574;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.93;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2306,231,0 chrIII 34035 . C A 1555 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.21;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1588,156,0 chrIII 34309 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.36;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2988,301,0 chrIII 34403 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.9366;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.72;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3094,310,0 chrIII 34434 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.35;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2858,294,0 chrIII 37664 . A G 1006 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1039,108,0 chrIII 37740 . A C 200.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.145e+02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:233,24,0 chrIII 38664 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.361;QD=20.60;ReadPosRankSum=2.372;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1990,204,0 chrIII 40089 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0945;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4207,415,0 chrIII 40663 . G T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.8459;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.55;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4922,517,0 chrIII 41580 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.5374;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.78;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3172,330,0 chrIII 43107 . T G 3096 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.02;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3129,324,0 chrIII 43835 . T G 2714 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=25.36;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2747,276,0 chrIII 43874 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.45;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2800,288,0 chrIII 43877 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.08;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2926,289,0 chrIII 44562 . G A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.082;DP=88;Dels=0.02;FS=53.651;HaplotypeScore=25.7275;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=0.188;QD=0.91;ReadPosRankSum=-2.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,18:86:99:110,0,400 chrIII 46562 . T A 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=163;Dels=0.00;FS=9.691;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.216;QD=24.26;ReadPosRankSum=2.809;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3954,391,0 chrIII 48299 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4208,421,0 chrIII 49400 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4760,475,0 chrIII 49436 . T C 5537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=3.339;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.781;QD=23.66;ReadPosRankSum=1.702;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5537,565,0 chrIII 49571 . G A 5454.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5454,550,0 chrIII 49655 . G A 6634.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=19.5102;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.95;SB=-3.747e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6634,670,0 chrIII 50099 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4496,445,0 chrIII 50269 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.742;QD=23.45;ReadPosRankSum=2.928;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2331,234,0 chrIII 50477 . T G 585 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.40;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:618,60,0 chrIII 50560 . C T 363 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=63.0771;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=7.12;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,46:49:45:396,45,0 chrIII 50675 . T C 96.26 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=89.1222;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=0.99;SB=-8.203e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:15:129,15,0 chrIII 50721 . G T 1717 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=10.7261;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.20;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1750,180,0 chrIII 50770 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=26.61;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4098,415,0 chrIII 50897 . G T 4414.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.12;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4414,454,0 chrIII 51119 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=229;Dels=0.00;FS=7.398;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.102;QD=25.29;ReadPosRankSum=2.342;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5792,574,0 chrIII 51419 . C T 7443.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=27.3850;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.93;SB=-4.113e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:7443,763,0 chrIII 51491 . C T 7231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=19.5416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.107;QD=23.40;ReadPosRankSum=0.959;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:1,308:309:99:7231,763,0 chrIII 51650 . G A 7074.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=26.5962;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.12;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:7074,706,0 chrIII 53891 . T C 6848.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=13.8746;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6848,706,0 chrIII 54426 . G A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.95;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4841,475,0 chrIII 54441 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.43;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4568,463,0 chrIII 54482 . C A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.5780;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.67;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4734,472,0 chrIII 54535 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.53;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4378,436,0 chrIII 54588 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.61;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3660,370,0 chrIII 54609 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.606;QD=23.96;ReadPosRankSum=1.711;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3906,400,0 chrIII 54721 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.31;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2714,268,0 chrIII 55716 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.76;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4003,403,0 chrIII 56210 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.655;DP=152;Dels=0.00;FS=12.177;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.515;QD=22.42;ReadPosRankSum=3.791;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:5,146:152:99:3408,349,0 chrIII 57303 . A G 686 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.1848;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:30:75:719,75,0 chrIII 59775 . G A 4664.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.42;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4664,472,0 chrIII 59925 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.1670;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.14;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3717,367,0 chrIII 60024 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.98;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3819,382,0 chrIII 60058 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3936,394,0 chrIII 60354 . C G 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=198;Dels=0.00;FS=4.349;HaplotypeScore=26.9293;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.679;QD=23.32;ReadPosRankSum=-1.078;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4618,475,0 chrIII 60463 . G A 6150.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.65;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6150,649,0 chrIII 60752 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.675;QD=22.50;ReadPosRankSum=1.673;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2688,276,0 chrIII 61224 . T A 1172 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.54;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1205,120,0 chrIII 61283 . C G 340 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.45;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:39:373,39,0 chrIII 61358 . G T 2744 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2777,297,0 chrIII 61630 . A G 6069.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.9986;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.62;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:6069,610,0 chrIII 62729 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.41;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1508,156,0 chrIII 63611 . T C 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=3.866;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.498;QD=24.21;ReadPosRankSum=1.715;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,206:211:99:5108,520,0 chrIII 63878 . C G 5740.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.1956;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.86;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5740,571,0 chrIII 63929 . C T 4814.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6146;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4814,505,0 chrIII 64304 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3789,405,0 chrIII 67820 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=2.879;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.402;QD=24.53;ReadPosRankSum=2.371;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3851,394,0 chrIII 67970 . C G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4113,418,0 chrIII 68070 . T G 4793.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4793,481,0 chrIII 70158 . G T 5360.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.1948;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.77;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5360,541,0 chrIII 70425 . A T 5372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.177;QD=24.31;ReadPosRankSum=2.394;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5372,559,0 chrIII 71079 . T C 7042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=297;Dels=0.00;FS=6.837;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.322;QD=23.71;ReadPosRankSum=2.400;SB=-3.864e+03 GT:AD:DP:GQ:PL 1/1:2,294:297:99:7042,706,0 chrIII 72402 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.85;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3269,354,0 chrIII 72786 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.451;QD=22.93;ReadPosRankSum=2.356;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4793,493,0 chrIII 72790 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.85;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4369,448,0 chrIII 73403 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2313;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.85;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4100,400,0 chrIII 73471 . G A 5727.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.90;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5727,583,0 chrIII 74074 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=139;Dels=0.00;FS=5.637;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.254;QD=26.52;ReadPosRankSum=2.906;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3686,379,0 chrIII 74146 . C G 3950.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=26.87;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3950,394,0 chrIII 74327 . C A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.02;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4074,418,0 chrIII 74346 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.844;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.069;QD=22.68;ReadPosRankSum=2.373;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3629,373,0 chrIII 74505 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4781;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.01;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2554,267,0 chrIII 74562 . G T 2323 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.20;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2356,234,0 chrIII 74673 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=27.67;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3680,358,0 chrIII 74692 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4542;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.28;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3601,358,0 chrIII 75025 . T C 5514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=2.923;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.097;QD=25.41;ReadPosRankSum=2.427;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:5514,559,0 chrIII 75053 . T C 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.4470;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.033;QD=24.49;ReadPosRankSum=1.667;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5240,532,0 chrIII 75088 . T A 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=6.681;HaplotypeScore=18.2889;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.081;QD=23.24;ReadPosRankSum=2.395;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5253,523,0 chrIII 75130 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.51;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4023,426,0 chrIII 75202 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.43;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4667,495,0 chrIII 75288 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2172;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.98;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3722,367,0 chrIII 75503 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.41;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2195,225,0 chrIII 76131 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=25.24;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3307,325,0 chrIII 76147 . T G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.668;QD=22.46;ReadPosRankSum=1.705;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2930,303,0 chrIII 76973 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3941,388,0 chrIII 77505 . A G 6198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=253;Dels=0.00;FS=2.866;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=24.50;ReadPosRankSum=2.353;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:6198,619,0 chrIII 78354 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.23;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3707,367,0 chrIII 78862 . T A 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=97;Dels=0.00;FS=5.288;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.043;QD=18.29;ReadPosRankSum=3.220;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1807,189,0 chrIII 79096 . G T 5590.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.75;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5590,574,0 chrIII 79170 . G A 5524.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5524,583,0 chrIII 80173 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.35;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2984,300,0 chrIII 81896 . C G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3625,370,0 chrIII 82365 . G A 55.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:88,9,0 chrIII 82590 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=26.12;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:660,66,0 chrIII 82701 . G A 177.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.9846;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=19.67;SB=-5.897e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:210,24,0 chrIII 83118 . T G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=89;Dels=0.00;FS=2.574;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.193;QD=23.76;ReadPosRankSum=2.921;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:2148,219,0 chrIII 83421 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=26.53;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3137,307,0 chrIII 83576 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=22.54;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2851,286,0 chrIII 83594 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=-1.175;QD=21.97;ReadPosRankSum=1.670;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2494,255,0 chrIII 83597 . G T 2242 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=20.76;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2275,228,0 chrIII 83607 . T A 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.554;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-0.543;QD=20.10;ReadPosRankSum=1.698;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2083,207,0 chrIII 83631 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.00;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2265,231,0 chrIII 84048 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=21.92;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1896,198,0 chrIII 84070 . G A 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.476;DP=52;Dels=0.00;FS=13.520;HaplotypeScore=41.8156;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=1;MQRankSum=-0.611;QD=15.60;ReadPosRankSum=-5.207;SB=-4.800e+01 GT:AD:DP:GQ:PL 1/1:13,39:52:87:844,87,0 chrIII 84097 . C T 120.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=2;QD=5.47;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:15:153,15,0 chrIII 84099 . A G 120.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=2;QD=5.47;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:15:153,15,0 chrIII 84103 . A G 114.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=2;MQRankSum=0.180;QD=4.97;ReadPosRankSum=2.216;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:4,19:23:15:147,15,0 chrIII 84109 . T C 120.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=2;MQRankSum=1.569;QD=5.23;ReadPosRankSum=1.569;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,20:23:15:153,15,0 chrIII 84111 . C T 105.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=2;MQRankSum=1.569;QD=4.58;ReadPosRankSum=1.569;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,20:23:15:138,15,0 chrIII 84112 . G C 109.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=2;MQRankSum=1.569;QD=4.75;ReadPosRankSum=1.569;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,20:23:15:142,15,0 chrIII 84114 . T C 120.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=34;Dels=0.00;FS=70.315;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=2;MQRankSum=0.487;QD=3.54;ReadPosRankSum=4.652;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:14,20:34:15:153,15,0 chrIII 84116 . C G 115.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.645;DP=35;Dels=0.00;FS=74.361;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=2;MQRankSum=1.455;QD=3.29;ReadPosRankSum=4.624;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:15,20:35:15:148,15,0 chrIII 84117 . T C 120.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=2;MQRankSum=1.569;QD=3.44;ReadPosRankSum=0.908;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,20:35:15:153,15,0 chrIII 84133 . A G 253.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;DP=64;Dels=0.00;FS=127.646;HaplotypeScore=20.2730;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=2;MQRankSum=0.909;QD=3.95;ReadPosRankSum=-3.065;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,46:64:46:283,0,46 chrIII 84152 . C T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DP=64;Dels=0.00;FS=122.875;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=2;MQRankSum=-0.378;QD=0.39;ReadPosRankSum=-1.808;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,47:64:55:55,0,71 chrIII 84161 . A G 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=66;Dels=0.00;FS=114.911;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=1;MQRankSum=-0.713;QD=3.21;ReadPosRankSum=-1.894;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,52:66:56:242,0,56 chrIII 84165 . A G 307.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DP=61;Dels=0.00;FS=96.428;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=1;MQRankSum=-0.108;QD=5.03;ReadPosRankSum=-0.449;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,47:61:42:337,0,42 chrIII 84166 . T C 280.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DP=60;Dels=0.00;FS=103.678;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.36;MQ0=1;MQRankSum=2.570;QD=4.67;ReadPosRankSum=-0.744;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,47:60:42:310,0,42 chrIII 84181 . G A 418.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=63;Dels=0.00;FS=78.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=-0.052;QD=6.64;ReadPosRankSum=-0.196;SB=-3.030e+00 GT:AD:DP:GQ:PL 0/1:8,55:63:22:448,0,22 chrIII 84190 . G A 498.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=61;Dels=0.00;FS=77.367;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=0.203;QD=8.16;ReadPosRankSum=1.699;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:8,53:61:20:528,0,20 chrIII 84194 . C T 481.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DP=56;Dels=0.00;FS=66.664;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=1.313;QD=8.59;ReadPosRankSum=2.502;SB=-3.022e+00 GT:AD:DP:GQ:PL 0/1:7,49:56:26:511,0,26 chrIII 84195 . A G 635 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=1;MQRankSum=1.670;QD=11.14;ReadPosRankSum=1.670;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:69:668,69,0 chrIII 84204 . G A 457.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;DP=52;Dels=0.00;FS=72.011;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=2;MQRankSum=0.911;QD=8.79;ReadPosRankSum=3.597;SB=-3.229e+00 GT:AD:DP:GQ:PL 0/1:8,44:52:10:487,0,10 chrIII 84205 . A G 454.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;DP=52;Dels=0.00;FS=72.011;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=2;MQRankSum=-1.060;QD=8.73;ReadPosRankSum=3.597;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:8,44:52:28:484,0,28 chrIII 84208 . A G 501.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.272;DP=51;Dels=0.00;FS=62.803;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=2;MQRankSum=0.149;QD=9.83;ReadPosRankSum=3.121;SB=-3.392e-01 GT:AD:DP:GQ:PL 1/1:7,44:51:14:534,14,0 chrIII 84209 . T A 515 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.690;DP=50;Dels=0.00;FS=52.891;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=2;MQRankSum=1.735;QD=10.30;ReadPosRankSum=2.667;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:6,44:50:32:548,32,0 chrIII 84216 . G A 442.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.395;DP=46;Dels=0.00;FS=29.759;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=2;MQRankSum=1.493;QD=9.61;ReadPosRankSum=-0.366;SB=-3.390e-02 GT:AD:DP:GQ:PL 1/1:4,42:46:25:475,25,0 chrIII 84242 . T C 364 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=2;QD=21.41;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:42:397,42,0 chrIII 84468 . T C 370 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=8;QD=14.23;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:7,18:26:42:403,42,0 chrIII 84495 . A G 200.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=3;QD=14.29;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:3,11:14:24:233,24,0 chrIII 84735 . C T 89.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=17.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:122,12,0 chrIII 86692 . T C 51.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.25;MQ0=45;QD=1.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,14:48:9:84,9,0 chrIII 86728 . A G 324 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=23;QD=4.21;SB=-8.899e+01 GT:AD:DP:GQ:PL 1/1:12,65:77:36:357,36,0 chrIII 86810 . T G 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=14.61;MQ0=42;QD=2.20;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:42,18:64:21:174,21,0 chrIII 86812 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.60;MQ0=42;QD=0.34;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:42,11:53:6:49,6,0 chrIII 86815 . C A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.95;MQ0=42;QD=0.35;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:42,9:51:6:49,6,0 chrIII 86909 . T G 85.51 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.79;MQ0=61;QD=1.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:41,29:70:12:118,12,0 chrIII 86959 . G A 204.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.70;MQ0=26;QD=5.23;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:21,18:39:24:237,24,0 chrIII 91321 . C G 1612 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.08;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1645,168,0 chrIII 91728 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.21;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3477,363,0 chrIII 91977 . G A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.3740;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.25;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4899,490,0 chrIII 92106 . T C 5697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.2392;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=-0.899;QD=24.24;ReadPosRankSum=1.658;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:5697,580,0 chrIII 92187 . C T 5191.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.27;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5191,520,0 chrIII 92193 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=245;Dels=0.00;FS=8.507;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.260;QD=20.83;ReadPosRankSum=3.390;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:4,241:245:99:5103,523,0 chrIII 92292 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.8994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4739,478,0 chrIII 92556 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=28.83;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2628,261,0 chrIII 92671 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.86;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2412,237,0 chrIII 92716 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.46;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1941,192,0 chrIII 93230 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0761;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.67;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4564,463,0 chrIII 93275 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4334,454,0 chrIII 93455 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=179;Dels=0.00;FS=6.096;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.274;QD=23.27;ReadPosRankSum=2.960;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:4166,444,0 chrIII 93512 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=187;Dels=0.00;FS=9.610;HaplotypeScore=10.3353;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.506;QD=23.16;ReadPosRankSum=2.908;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:4331,439,0 chrIII 93620 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.362;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.789;QD=23.45;ReadPosRankSum=1.713;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4244,436,0 chrIII 93824 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1581;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4249,433,0 chrIII 94248 . C T 5230.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9786;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.10;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5230,517,0 chrIII 94376 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.54;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1450,153,0 chrIII 94470 . T G 1019 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=22.64;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1052,105,0 chrIII 94554 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.52;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1515,156,0 chrIII 94573 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.84;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1860,183,0 chrIII 94591 . C G 2402 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.10;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2435,249,0 chrIII 95029 . A G 6791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=274;Dels=0.00;FS=13.621;HaplotypeScore=23.1990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.592;QD=24.78;ReadPosRankSum=3.416;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:4,268:274:99:6791,703,0 chrIII 95071 . A G 6122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=249;Dels=0.00;FS=7.243;HaplotypeScore=18.8413;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.005;QD=24.59;ReadPosRankSum=2.360;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:6122,628,0 chrIII 95149 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=243;Dels=0.00;FS=2.933;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.117;QD=22.41;ReadPosRankSum=2.368;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5446,550,0 chrIII 95527 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4268,433,0 chrIII 95697 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.38;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4010,397,0 chrIII 95776 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.760;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.800;QD=26.38;ReadPosRankSum=1.708;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3852,379,0 chrIII 95815 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.46;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3659,384,0 chrIII 95832 . T G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.91;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4185,436,0 chrIII 95935 . A C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=6.592;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.422;QD=22.43;ReadPosRankSum=2.395;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3061,318,0 chrIII 95946 . C G 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=22.33;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2824,285,0 chrIII 95967 . G T 2340 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.66;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2373,246,0 chrIII 95988 . G C 2351 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.44;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2384,240,0 chrIII 96019 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=132;Dels=0.00;FS=5.949;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.469;QD=22.77;ReadPosRankSum=2.947;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:3039,306,0 chrIII 96055 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=2.835;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.557;QD=26.25;ReadPosRankSum=2.419;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:4226,427,0 chrIII 96715 . C G 4607.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.2308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4607,460,0 chrIII 96799 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.24;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3625,375,0 chrIII 96805 . A T 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.592;QD=23.42;ReadPosRankSum=1.644;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3700,370,0 chrIII 96988 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.3564;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.107;QD=24.56;ReadPosRankSum=1.640;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2808,277,0 chrIII 97369 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=140;Dels=0.00;FS=5.288;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.869;QD=24.49;ReadPosRankSum=2.920;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:3428,351,0 chrIII 97696 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2769,294,0 chrIII 98308 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=26.46;ReadPosRankSum=1.690;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4313,436,0 chrIII 98535 . C G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3724,367,0 chrIII 98578 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3358,340,0 chrIII 98617 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3583,375,0 chrIII 99090 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.959;QD=27.30;ReadPosRankSum=1.705;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3549,361,0 chrIII 99163 . T C 2696 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.29;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2729,279,0 chrIII 99195 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.30;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2844,288,0 chrIII 99209 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.255;HaplotypeScore=12.7038;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.281;QD=20.04;ReadPosRankSum=1.115;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2959,303,0 chrIII 99392 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.99;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4340,427,0 chrIII 99481 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=141;Dels=0.00;FS=13.855;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.317;QD=23.67;ReadPosRankSum=2.705;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3337,345,0 chrIII 99547 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5213;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.61;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4307,436,0 chrIII 99700 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2768,285,0 chrIII 100212 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.919;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.350;QD=26.03;ReadPosRankSum=2.390;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3235,328,0 chrIII 100244 . T C 3116 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.97;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3149,310,0 chrIII 100295 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2232,237,0 chrIII 100585 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.199;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.442;QD=26.51;ReadPosRankSum=1.695;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2551,252,0 chrIII 100644 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=6.225;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.786;QD=22.56;ReadPosRankSum=2.359;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2469,252,0 chrIII 100653 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.37;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2360,246,0 chrIII 100869 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9958;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.36;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2883,289,0 chrIII 100927 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.07;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2841,280,0 chrIII 101152 . C T 1832 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.81;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1865,183,0 chrIII 101155 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.51;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1856,186,0 chrIII 101527 . C A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3544,369,0 chrIII 101597 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.01;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3827,408,0 chrIII 101813 . T G 1830 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.79;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:84:99:1863,189,0 chrIII 102669 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.30;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3524,361,0 chrIII 103593 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=185;Dels=0.00;FS=6.580;HaplotypeScore=13.4196;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.818;QD=24.48;ReadPosRankSum=1.713;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4528,483,0 chrIII 104733 . T C 7033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=300;Dels=0.00;FS=6.064;HaplotypeScore=20.1224;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.537;QD=23.44;ReadPosRankSum=2.408;SB=-3.960e+03 GT:AD:DP:GQ:PL 1/1:2,298:300:99:7033,721,0 chrIII 105047 . G A 5215.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.95;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,204:209:99:5215,514,0 chrIII 105155 . C T 7945.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.80;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:7945,796,0 chrIII 105414 . G A 8870.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=23.6726;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.40;SB=-5.194e+03 GT:AD:DP:GQ:PL 1/1:0,377:379:99:8870,887,0 chrIII 108054 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=8.653;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.709;QD=25.83;ReadPosRankSum=1.627;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3436,355,0 chrIII 109046 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1752,174,0 chrIII 109581 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3760,385,0 chrIII 114093 . T G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=4.327;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.160;QD=22.96;ReadPosRankSum=1.705;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3064,312,0 chrIII 114986 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2731,291,0 chrIII 115120 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.92;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3294,328,0 chrIII 115446 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.93;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2522,273,0 chrIII 118719 . A G 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=129;Dels=0.00;FS=5.524;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.457;QD=22.14;ReadPosRankSum=2.929;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2889,289,0 chrIII 119474 . A C 1055 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=8.3330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1088,111,0 chrIII 119587 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.29;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1821,195,0 chrIII 120341 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3006,300,0 chrIII 122563 . C G 5075.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.99;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5075,508,0 chrIII 122628 . C T 5259.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.4241;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5259,526,0 chrIII 123261 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3393,354,0 chrIII 128224 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1833,183,0 chrIII 128303 . A G 1921 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.28;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1954,195,0 chrIII 130242 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.78;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2688,265,0 chrIII 130372 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.49;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1160,117,0 chrIII 130462 . T C 858 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:90:891,90,0 chrIII 130940 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3235,336,0 chrIII 131280 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=168;Dels=0.00;FS=2.625;HaplotypeScore=14.4994;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.295;QD=26.20;ReadPosRankSum=2.420;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:4401,442,0 chrIII 131983 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.93;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2807,277,0 chrIII 133467 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.34;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3481,366,0 chrIII 133715 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2898,297,0 chrIII 136463 . A G 5866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=222;Dels=0.00;FS=11.943;HaplotypeScore=11.3687;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.028;QD=26.42;ReadPosRankSum=2.360;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:5866,610,0 chrIII 136768 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2808,309,0 chrIII 139959 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2757,279,0 chrIII 140656 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4041,415,0 chrIII 143131 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.650;QD=25.24;ReadPosRankSum=1.701;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2860,294,0 chrIII 144921 . G A 5694.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.5507;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.24;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5694,583,0 chrIII 145017 . C T 5452.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5452,541,0 chrIII 145735 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=25.94;ReadPosRankSum=1.692;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4566,469,0 chrIII 147608 . G A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3892,379,0 chrIII 148618 . T G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=4.627;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.475;QD=23.08;ReadPosRankSum=1.709;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3416,349,0 chrIII 148649 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.93;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3509,358,0 chrIII 148694 . A T 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8080;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.474;QD=20.84;ReadPosRankSum=2.385;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3221,336,0 chrIII 148835 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.78;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2673,282,0 chrIII 148991 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.08;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3492,363,0 chrIII 152269 . T C 3054 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3087,313,0 chrIII 152347 . T A 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=3.047;HaplotypeScore=10.0300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.255;QD=25.47;ReadPosRankSum=2.361;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2860,286,0 chrIII 152546 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.545;QD=25.15;ReadPosRankSum=1.700;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2799,280,0 chrIII 156868 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4436,460,0 chrIII 156960 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3791,391,0 chrIII 157792 . T G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.313;HaplotypeScore=11.7522;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.421;QD=24.54;ReadPosRankSum=1.693;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4393,465,0 chrIII 157998 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.69;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3699,384,0 chrIII 158141 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.85;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3187,319,0 chrIII 158345 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.52;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2126,213,0 chrIII 158378 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=8.022;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.457;QD=24.69;ReadPosRankSum=2.333;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2625,264,0 chrIII 158956 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3117,324,0 chrIII 159689 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0652;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.19;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3274,322,0 chrIII 159774 . C A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3286,322,0 chrIII 159894 . A T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.996;QD=24.15;ReadPosRankSum=1.705;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3100,310,0 chrIII 161749 . G T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3556,355,0 chrIII 162207 . T C 2309 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2342,243,0 chrIII 162396 . G C 326 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.18;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:359,39,0 chrIII 162640 . T G 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.151;QD=26.59;ReadPosRankSum=2.395;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2426,252,0 chrIII 162671 . A G 3022 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.51;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3055,301,0 chrIII 162941 . C A 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=3.045;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.565;QD=22.62;ReadPosRankSum=1.775;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2838,303,0 chrIII 163757 . T G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.01;FS=8.300;HaplotypeScore=13.2100;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.982;QD=23.83;ReadPosRankSum=2.359;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4527,457,0 chrIII 163810 . A G 4633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.409;QD=23.76;ReadPosRankSum=1.624;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4633,472,0 chrIII 164249 . G T 5585.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.98;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5585,547,0 chrIII 164277 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=235;Dels=0.00;FS=5.128;HaplotypeScore=9.8221;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.972;QD=22.05;ReadPosRankSum=3.386;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:4,230:235:99:5181,535,0 chrIII 165025 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=3.040;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.009;QD=21.11;ReadPosRankSum=2.412;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2777,277,0 chrIII 165034 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.86;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2711,276,0 chrIII 165283 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5066;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.00;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3253,322,0 chrIII 167724 . T C 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.219;QD=24.39;ReadPosRankSum=1.847;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:4048,423,0 chrIII 168408 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=24.20;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1364,135,0 chrIII 173354 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.14;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3150,313,0 chrIII 177325 . A G 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.445;QD=25.39;ReadPosRankSum=1.683;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1836,183,0 chrIII 177399 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1959,204,0 chrIII 178367 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2894,288,0 chrIII 178676 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.63;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2699,270,0 chrIII 179122 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3373,334,0 chrIII 180127 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2006,195,0 chrIII 181304 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1817,180,0 chrIII 181577 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.779;QD=26.97;ReadPosRankSum=1.700;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2973,306,0 chrIII 182576 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.32;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3219,316,0 chrIII 183385 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2223;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.07;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2614,264,0 chrIII 183635 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.58;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2452,252,0 chrIII 183893 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.59;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2581,261,0 chrIII 184874 . C A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.38;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3632,355,0 chrIII 185117 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=6.8904;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.068;QD=24.22;ReadPosRankSum=1.674;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2940,300,0 chrIII 187346 . G T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1239;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.94;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3683,373,0 chrIII 187655 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9550;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.066;QD=24.89;ReadPosRankSum=0.866;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3907,371,0 chrIII 187932 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.21;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1521,162,0 chrIII 187956 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=25.85;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1765,171,0 chrIII 188418 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2710,294,0 chrIII 188954 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3623,367,0 chrIII 189555 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=184;Dels=0.00;FS=8.769;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.570;QD=27.20;ReadPosRankSum=2.423;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:5005,493,0 chrIII 189630 . C T 5216.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5216,520,0 chrIII 190765 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.13;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4096,429,0 chrIII 191932 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.54;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3503,352,0 chrIII 192715 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2596,256,0 chrIII 193066 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=26.36;ReadPosRankSum=1.703;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3222,325,0 chrIII 193107 . C A 2721 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2754,282,0 chrIII 193600 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.99;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2932,294,0 chrIII 193828 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.45;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3022,301,0 chrIII 195732 . C A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.72;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3606,367,0 chrIII 196331 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2109,213,0 chrIII 198348 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.3672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3995,400,0 chrIII 199400 . G A 2665 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=40;QD=17.19;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2698,294,0 chrIII 201189 . A C 5033.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9619;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=27.21;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:5033,511,0 chrIII 201900 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=95;Dels=0.00;FS=4.370;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.428;QD=24.52;ReadPosRankSum=1.695;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2362,243,0 chrIII 201978 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2732,279,0 chrIII 204750 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3698,382,0 chrIII 207086 . G C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0598;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=26.81;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4557,460,0 chrIII 207999 . C G 2765 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.48;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2798,294,0 chrIII 208234 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.89;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:4088,415,0 chrIII 208542 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.2407;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.47;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4306,439,0 chrIII 208660 . G T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.04;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4328,439,0 chrIII 208696 . G A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.06;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3920,397,0 chrIII 208702 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.816;QD=20.73;ReadPosRankSum=1.095;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3627,354,0 chrIII 209803 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;DP=100;Dels=0.00;FS=48.150;HaplotypeScore=37.9163;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-1.309;QD=0.12;ReadPosRankSum=-1.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,21:100:42:42,0,765 chrIII 209941 . G C 4190.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.1110;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.79;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4190,427,0 chrIII 211348 . C T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.4557;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.61;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5177,523,0 chrIII 211998 . G C 7320.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=16.7698;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.81;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,291:295:99:7320,736,0 chrIII 213859 . G A 1058 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=12.9415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1091,111,0 chrIII 214135 . G A 5736.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.6679;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.68;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5736,580,0 chrIII 214762 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3023,318,0 chrIII 215005 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8202;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.09;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3216,327,0 chrIII 215487 . G T 7547.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.9930;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.42;SB=-3.978e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:7547,763,0 chrIII 215848 . C T 6128.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.9563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:6128,610,0 chrIII 216257 . C T 6085.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.7600;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.94;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6085,607,0 chrIII 219107 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9325;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.38;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3452,378,0 chrIII 221332 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.86;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3093,324,0 chrIII 222524 . G T 5840.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5840,592,0 chrIII 224795 . A G 192.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.00;SB=-5.591e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:225,24,0 chrIII 224846 . T C 890 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=26.18;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:96:923,96,0 chrIII 224861 . T G 951 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:984,111,0 chrIII 225105 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=4.116;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.678;QD=24.51;ReadPosRankSum=1.678;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3195,325,0 chrIII 225343 . T A 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.393;HaplotypeScore=8.8933;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.397;QD=23.60;ReadPosRankSum=1.607;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1992,198,0 chrIII 225414 . A G 2264 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2297,234,0 chrIII 226510 . C T 6287.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6287,652,0 chrIII 227570 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.79;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1787,177,0 chrIII 227763 . C A 1791 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1824,180,0 chrIII 228130 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=25.04;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3656,387,0 chrIII 229111 . T G 1528 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1561,162,0 chrIII 230267 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.151;QD=23.17;ReadPosRankSum=1.707;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3253,334,0 chrIII 231031 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DP=64;Dels=0.00;FS=93.296;HaplotypeScore=16.8828;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-0.537;QD=0.48;ReadPosRankSum=-3.647;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:39,25:64:61:61,0,328 chrIII 231858 . G T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3509,349,0 chrIII 233565 . T C 4652.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.01;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4652,469,0 chrIII 234551 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.503;QD=24.10;ReadPosRankSum=1.687;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3759,399,0 chrIII 235472 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=146;Dels=0.00;FS=6.022;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.593;QD=20.76;ReadPosRankSum=2.938;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3064,315,0 chrIII 235480 . G C 3094 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.77;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3127,313,0 chrIII 235561 . T A 2649 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3576;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.07;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2682,273,0 chrIII 235639 . T A 2892 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.25;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2925,297,0 chrIII 235645 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.88;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2685,276,0 chrIII 235669 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.34;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2573,255,0 chrIII 236111 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.20;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3831,382,0 chrIII 236387 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.9592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3325,325,0 chrIII 236451 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3602,375,0 chrIII 236789 . T C 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.155;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.250;QD=14.34;ReadPosRankSum=1.203;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:88:1252,88,0 chrIII 236969 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6946;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.69;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2710,276,0 chrIII 237018 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.75;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2954,306,0 chrIII 237321 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4643,469,0 chrIII 237610 . T A 6669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.061;QD=25.85;ReadPosRankSum=1.705;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6669,670,0 chrIII 237645 . C T 6926.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.56;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6926,712,0 chrIII 237732 . T C 7822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=305;Dels=0.00;FS=2.985;HaplotypeScore=18.2944;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.961;QD=25.65;ReadPosRankSum=2.425;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:7822,802,0 chrIII 237960 . G A 6845.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.23;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6845,679,0 chrIII 238082 . T C 5704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=248;Dels=0.00;FS=9.854;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.796;QD=23.00;ReadPosRankSum=2.955;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:3,244:248:99:5704,580,0 chrIII 238089 . T C 5561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=244;Dels=0.00;FS=3.343;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.923;QD=22.79;ReadPosRankSum=1.718;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5561,568,0 chrIII 238260 . G A 7032.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=27.6426;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.42;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:7032,709,0 chrIII 238350 . C T 7410.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.32;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7410,745,0 chrIII 238359 . C T 7267.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=7.5675;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.09;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7267,739,0 chrIII 238562 . A G 6849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.882;DP=301;Dels=0.00;FS=10.410;HaplotypeScore=23.4416;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.240;QD=22.75;ReadPosRankSum=4.148;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:6,294:301:99:6849,706,0 chrIII 238714 . A T 5161.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.3579;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.07;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5161,514,0 chrIII 238918 . T C 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=217;Dels=0.00;FS=8.949;HaplotypeScore=15.0311;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.239;QD=23.39;ReadPosRankSum=3.363;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:4,211:217:99:5076,523,0 chrIII 238947 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.366;QD=24.45;ReadPosRankSum=1.699;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:5134,523,0 chrIII 239515 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.135;QD=23.99;ReadPosRankSum=1.633;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4174,424,0 chrIII 239957 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1805,186,0 chrIII 240075 . C A 543 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.10;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:57:576,57,0 chrIII 240280 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2230,222,0 chrIII 240337 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=8.4606;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.93;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2875,283,0 chrIII 240607 . G A 2459 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.20;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2492,243,0 chrIII 240608 . T A 2434 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.18;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2467,246,0 chrIII 240922 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.928;QD=23.90;ReadPosRankSum=1.687;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3728,382,0 chrIII 241126 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.6267;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.46;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4110,412,0 chrIII 241156 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.84;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3900,394,0 chrIII 241753 . T C 4985.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.0670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4985,523,0 chrIII 241995 . G A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.4818;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.36;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4883,496,0 chrIII 242071 . C T 4646.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.58;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4646,475,0 chrIII 242137 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.72;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2944,295,0 chrIII 242143 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.974;QD=21.34;ReadPosRankSum=1.705;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2764,279,0 chrIII 242230 . A T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=24.52;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3359,334,0 chrIII 242239 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.60;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3444,349,0 chrIII 242251 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=23.26;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2940,297,0 chrIII 242407 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=73;Dels=0.00;FS=2.987;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.805;QD=22.36;ReadPosRankSum=2.381;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1665,171,0 chrIII 242483 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.53;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1223,126,0 chrIII 242578 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.18;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3433,355,0 chrIII 242723 . C T 5714.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.97;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5714,589,0 chrIII 242777 . T A 6035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=263;Dels=0.00;FS=2.865;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.750;QD=22.95;ReadPosRankSum=2.375;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:6035,640,0 chrIII 242882 . A G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=246;Dels=0.00;FS=5.828;HaplotypeScore=27.6063;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.155;QD=19.52;ReadPosRankSum=2.914;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:4802,499,0 chrIII 243184 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.36;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4590,454,0 chrIII 243218 . C G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.58;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3314,381,0 chrIII 243219 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.95;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3291,378,0 chrIII 243321 . T C 4857.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=23.02;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4857,496,0 chrIII 243734 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=29.0041;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.720;QD=18.40;ReadPosRankSum=0.872;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3032,307,0 chrIII 243779 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1644;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.59;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3659,364,0 chrIII 243794 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=165;Dels=0.00;FS=8.841;HaplotypeScore=7.6446;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.561;QD=22.19;ReadPosRankSum=3.309;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:4,160:165:99:3662,376,0 chrIII 243914 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.46;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3590,349,0 chrIII 243928 . T A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.14;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3448,360,0 chrIII 243959 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.609;HaplotypeScore=9.4494;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.041;QD=22.69;ReadPosRankSum=2.410;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2846,300,0 chrIII 244604 . T C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=106;Dels=0.00;FS=6.117;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.221;QD=21.48;ReadPosRankSum=2.876;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2310,234,0 chrIII 244643 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.72;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2528,261,0 chrIII 244888 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.40;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2537,261,0 chrIII 245054 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.56;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2018,204,0 chrIII 245066 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.94;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2095,210,0 chrIII 245276 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.261;QD=25.58;ReadPosRankSum=1.634;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2745,273,0 chrIII 245396 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.49;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2888,288,0 chrIII 245631 . C A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:3335,325,0 chrIII 245950 . G T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2536;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.04;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3967,403,0 chrIII 246171 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.32;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4712,510,0 chrIII 246183 . C A 4738.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.23;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4738,475,0 chrIII 246581 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.35;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2574,261,0 chrIII 246789 . C A 2374 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.98;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2407,258,0 chrIII 246813 . T G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-1.470;QD=20.29;ReadPosRankSum=1.703;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2448,243,0 chrIII 246818 . T A 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.396;QD=18.28;ReadPosRankSum=1.678;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2373,237,0 chrIII 246853 . G A 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.1915;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.309;QD=18.97;ReadPosRankSum=2.383;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2841,279,0 chrIII 247156 . C A 9320.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=19.7769;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.09;SB=-4.278e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:9320,914,0 chrIII 247472 . C T 5166.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.0227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.37;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5166,523,0 chrIII 248057 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=28.53;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2601,261,0 chrIII 248549 . C T 5155.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.3622;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.33;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5155,526,0 chrIII 248853 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=139.5562;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=0.11;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:6:49,6,0 chrIII 249285 . A C 1803 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=8.241;HaplotypeScore=3.8103;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-1.928;QD=15.28;ReadPosRankSum=2.366;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1836,198,0 chrIII 249286 . C T 1653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8103;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;MQRankSum=-0.859;QD=14.13;ReadPosRankSum=0.392;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1686,192,0 chrIII 249290 . C A 2028 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=17.79;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2061,207,0 chrIII 249499 . C G 5822.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=24.57;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5822,604,0 chrIII 249541 . C G 6004.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=23.64;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6004,631,0 chrIII 249898 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.119;QD=25.69;ReadPosRankSum=1.633;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4470,454,0 chrIII 249994 . C A 3026 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4146;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.59;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3059,307,0 chrIII 250185 . T A 448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.528;QD=19.48;ReadPosRankSum=1.432;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:48:481,48,0 chrIII 250253 . T A 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.220;QD=24.81;ReadPosRankSum=1.605;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:69:703,69,0 chrIII 250855 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.367;QD=25.17;ReadPosRankSum=1.702;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2902,289,0 chrIII 251092 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=2.594;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.627;QD=25.14;ReadPosRankSum=2.919;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2824,288,0 chrIII 251323 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.2736;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.65;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3510,358,0 chrIII 251657 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0542;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.89;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3822,379,0 chrIII 251939 . A G 5071.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.44;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5071,511,0 chrIII 251945 . G A 4720.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.0654;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.88;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4720,498,0 chrIII 252079 . C T 5796.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=20.5363;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.18;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5796,610,0 chrIII 252128 . T C 5164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=237;Dels=0.00;FS=5.189;HaplotypeScore=17.4007;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=1.851;QD=21.79;ReadPosRankSum=2.693;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:4,230:237:99:5164,538,0 chrIII 252239 . A C 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=241;Dels=0.00;FS=3.908;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-1.516;QD=20.77;ReadPosRankSum=1.718;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5006,511,0 chrIII 252242 . A C 4893.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.56;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:4893,502,0 chrIII 252269 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.4380;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.21;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5109,514,0 chrIII 252345 . G A 5569.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.1354;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.75;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5569,565,0 chrIII 252377 . T C 6083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=257;Dels=0.00;FS=5.725;HaplotypeScore=12.1791;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.150;QD=23.67;ReadPosRankSum=2.941;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:3,251:257:99:6083,622,0 chrIII 252425 . A G 7250.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=19.5157;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.80;SB=-4.337e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:7250,745,0 chrIII 252633 . A G 4969.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.7929;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4969,517,0 chrIII 253015 . G T 6099.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6099,604,0 chrIII 253084 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3020;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.63;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4679,484,0 chrIII 253152 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.9871;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.531;QD=23.99;ReadPosRankSum=1.712;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4246,427,0 chrIII 253483 . G C 5382.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.40;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5382,535,0 chrIII 253507 . T A 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.1512;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.255;QD=21.52;ReadPosRankSum=1.662;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5315,559,0 chrIII 253696 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.1064;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.51;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4975,520,0 chrIII 253903 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.18;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4608,466,0 chrIII 253963 . C T 5399.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.96;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5399,535,0 chrIII 254180 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.02;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1799,186,0 chrIII 254370 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2242;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.51;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3340,337,0 chrIII 254715 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.30;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3597,381,0 chrIII 254941 . T A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.45;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3277,319,0 chrIII 254947 . G T 2976 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.96;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3009,301,0 chrIII 254961 . T C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.216;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.551;QD=18.73;ReadPosRankSum=1.653;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2505,261,0 chrIII 255150 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.00;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2233,225,0 chrIII 255168 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=16.77;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1542,165,0 chrIII 255699 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2558,261,0 chrIII 255891 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.68;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2847,283,0 chrIII 256359 . G C 2147 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2180,219,0 chrIII 256521 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2292,225,0 chrIII 257049 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.361;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=26.37;ReadPosRankSum=1.664;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2696,279,0 chrIII 257205 . A C 1632 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1665,171,0 chrIII 257455 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.90;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3315,334,0 chrIII 257484 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.25;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3728,373,0 chrIII 257531 . C G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.99;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3334,334,0 chrIII 257592 . T G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.58;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3555,352,0 chrIII 257960 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2757,285,0 chrIII 258066 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.17;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:2198,225,0 chrIII 258276 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.03;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4433,451,0 chrIII 258306 . G C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.72;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3875,400,0 chrIII 258477 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4043,400,0 chrIII 258579 . T C 3003 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.41;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3036,315,0 chrIII 258780 . T G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-1.028;QD=23.27;ReadPosRankSum=1.675;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4235,424,0 chrIII 258781 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-1.024;QD=22.58;ReadPosRankSum=1.713;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4087,421,0 chrIII 258847 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.02;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:2829,285,0 chrIII 258915 . G A 4401.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.72;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4401,451,0 chrIII 259351 . G A 724 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.85;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:75:757,75,0 chrIII 259403 . G A 1651 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1684,183,0 chrIII 259447 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.99;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1924,198,0 chrIII 259489 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.91;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1466,150,0 chrIII 259496 . T C 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.274;QD=16.59;ReadPosRankSum=2.338;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1493,156,0 chrIII 259676 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=6.096;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.583;QD=26.08;ReadPosRankSum=2.422;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4590,469,0 chrIII 259724 . T C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.299;QD=26.44;ReadPosRankSum=1.670;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4442,445,0 chrIII 259975 . G A 681 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:72:714,72,0 chrIII 260010 . A G 84.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.387;QD=4.23;ReadPosRankSum=1.561;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:1,19:20:12:117,12,0 chrIII 260698 . A C 5180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.524;QD=25.77;ReadPosRankSum=1.697;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:5180,532,0 chrIII 261312 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.50;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4072,421,0 chrIII 261331 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.315;QD=23.87;ReadPosRankSum=1.712;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:4272,436,0 chrIII 262105 . C T 8056.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=21.5911;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.07;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,364:365:99:8056,805,0 chrIII 262154 . C T 6850.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=19.6346;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.89;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:6850,694,0 chrIII 262264 . T C 5618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=241;Dels=0.00;FS=7.408;HaplotypeScore=15.8301;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.777;QD=23.31;ReadPosRankSum=2.399;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5618,562,0 chrIII 262916 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=8.8954;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.638;QD=23.54;ReadPosRankSum=1.696;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2293,234,0 chrIII 263029 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=26.09;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2851,280,0 chrIII 263132 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.94;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3175,327,0 chrIII 263163 . T C 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.726;QD=23.16;ReadPosRankSum=1.704;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2905,295,0 chrIII 263180 . A C 1303 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=15.70;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1336,132,0 chrIII 263182 . T C 1265 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.06;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1298,132,0 chrIII 263282 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.87;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3724,402,0 chrIII 263304 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0136;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.31;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4109,412,0 chrIII 263442 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.21;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5006,502,0 chrIII 263757 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.22;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3028,315,0 chrIII 263790 . A C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=2.978;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.255;QD=25.50;ReadPosRankSum=2.412;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3340,334,0 chrIII 264144 . G A 5292.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.2357;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.86;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5292,526,0 chrIII 264208 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=163;Dels=0.00;FS=21.633;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.260;QD=16.14;ReadPosRankSum=3.373;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:2664,288,0 chrIII 264441 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-0.562;QD=21.42;ReadPosRankSum=2.420;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3513,366,0 chrIII 264634 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.75;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2842,282,0 chrIII 264695 . A G 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=5.339;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.196;QD=25.77;ReadPosRankSum=1.634;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2790,294,0 chrIII 264732 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.97;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3201,316,0 chrIII 264781 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.7935;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.30;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3305,331,0 chrIII 264861 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8715;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.108;QD=22.76;ReadPosRankSum=1.684;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3368,351,0 chrIII 265240 . T C 5735.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.5328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.38;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5735,586,0 chrIII 266282 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.86;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3519,366,0 chrIII 266283 . G C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.78;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3431,363,0 chrIII 266465 . G A 5798.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=25.21;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5798,586,0 chrIII 266863 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2428,261,0 chrIII 266993 . G C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.96;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3243,328,0 chrIII 267008 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.78;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2982,298,0 chrIII 267157 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.47;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3964,406,0 chrIII 267271 . A C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.83;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3576,370,0 chrIII 267339 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.509;QD=25.01;ReadPosRankSum=1.703;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3009,309,0 chrIII 267542 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3363,340,0 chrIII 267793 . C G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.1584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3953,414,0 chrIII 267916 . G T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3511,352,0 chrIII 268012 . T A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3689,373,0 chrIII 268066 . C A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.74;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3261,339,0 chrIII 268449 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.98;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4046,412,0 chrIII 268696 . T C 4467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DP=342;Dels=0.00;FS=196.830;HaplotypeScore=15.0059;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=6;MQRankSum=6.577;QD=13.06;ReadPosRankSum=1.925;SB=-2.959e+03 GT:AD:DP:GQ:PL 0/1:109,232:342:99:4467,0,1452 chrIII 268711 . C T 4586.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DP=349;Dels=0.00;FS=183.174;HaplotypeScore=13.4426;MLEAC=1;MLEAF=0.500;MQ=37.38;MQ0=1;MQRankSum=1.591;QD=13.14;ReadPosRankSum=-0.209;SB=-2.711e+03 GT:AD:DP:GQ:PL 0/1:100,246:349:99:4586,0,1919 chrIII 271337 . C G 10075.01 filter AC=2;AF=1.00;AN=2;DP=439;Dels=0.00;FS=0.000;HaplotypeScore=23.1680;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-5.669e+03 GT:AD:DP:GQ:PL 1/1:0,437:439:99:10075,1028,0 chrIII 273446 . A C 1590 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1623,165,0 chrIII 273631 . T A 2229 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2262,222,0 chrIII 273723 . T G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.651;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.664;QD=24.42;ReadPosRankSum=1.698;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2548,261,0 chrIII 274530 . A G 5056.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5056,529,0 chrIII 277564 . G T 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.225;DP=107;Dels=0.00;FS=172.667;HaplotypeScore=2.7739;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=2.091;QD=2.08;ReadPosRankSum=-6.095;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,31:107:99:253,0,1393 chrIII 278675 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.51;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3579,364,0 chrIII 278791 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.36;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3776,376,0 chrIII 280449 . T G 2344 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2377,243,0 chrIII 282537 . A C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.66;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3695,370,0 chrIII 284743 . G C 3095 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.68;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3128,318,0 chrIII 285299 . C G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3981,403,0 chrIII 286180 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1536,153,0 chrIII 286440 . A G 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.720;QD=23.21;ReadPosRankSum=1.679;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1588,156,0 chrIII 289283 . C G 2513 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2546,255,0 chrIII 291075 . A C 2331 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7645;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.03;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2364,243,0 chrIII 291388 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.15;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1406,144,0 chrIII 291544 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:78:811,78,0 chrIII 292183 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.55;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1072,105,0 chrIII 292247 . C G 879 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=18.7432;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.98;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:912,93,0 chrIII 292282 . C A 1076 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1109,108,0 chrIII 292662 . C T 145.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:178,18,0 chrIII 292937 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.37;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1442,138,0 chrIII 293763 . T A 869.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;DP=145;Dels=0.00;FS=2.331;HaplotypeScore=7.3028;MLEAC=1;MLEAF=0.500;MQ=47.23;MQ0=0;MQRankSum=-1.200;QD=5.99;ReadPosRankSum=-1.251;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:99,46:145:99:899,0,2158 chrIII 293842 . A G 1742.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;DP=126;Dels=0.00;FS=5.856;HaplotypeScore=12.0204;MLEAC=1;MLEAF=0.500;MQ=50.17;MQ0=0;MQRankSum=1.101;QD=13.83;ReadPosRankSum=0.602;SB=-9.620e+02 GT:AD:DP:GQ:PL 0/1:43,83:126:99:1772,0,732 chrIII 293855 . G A 639.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;DP=122;Dels=0.00;FS=3.476;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=51.97;MQ0=0;MQRankSum=-0.008;QD=5.24;ReadPosRankSum=-1.418;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:80,42:122:99:669,0,1746 chrIII 294389 . A T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=26.09;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3314,345,0 chrIII 295260 . T G 440.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=55;Dels=0.00;FS=117.074;HaplotypeScore=3.4890;MLEAC=1;MLEAF=0.500;MQ=35.33;MQ0=0;MQRankSum=-2.220;QD=8.00;ReadPosRankSum=-2.394;SB=1.75 GT:AD:DP:GQ:PL 0/1:29,25:55:99:470,0,124 chrIII 295261 . A G 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;DP=53;Dels=0.00;FS=113.566;HaplotypeScore=2.7003;MLEAC=1;MLEAF=0.500;MQ=34.80;MQ0=0;MQRankSum=-2.895;QD=8.45;ReadPosRankSum=-3.127;SB=0.406 GT:AD:DP:GQ:PL 0/1:28,25:53:99:478,0,152 chrIII 296689 . C A 1957 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.76;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1990,204,0 chrIII 297919 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.54;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3767,379,0 chrIII 298117 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.43;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4470,463,0 chrIII 298326 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.88;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3459,346,0 chrIII 298402 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.19;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3229,336,0 chrIII 298408 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=3.006;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.784;QD=22.19;ReadPosRankSum=2.400;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3306,342,0 chrIII 298441 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.97;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2629,276,0 chrIII 298519 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.75;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2376,237,0 chrIII 298548 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=22.38;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2495,252,0 chrIII 298573 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=22.40;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2340,234,0 chrIII 298582 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=22.19;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2208,225,0 chrIII 298597 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=20.69;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1854,192,0 chrIII 298764 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=15.59;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1623,168,0 chrIII 298771 . C T 1479 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=14.09;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1512,165,0 chrIII 298775 . C T 1335 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=11.92;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1368,144,0 chrIII 298779 . A C 1408 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=12.24;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1441,153,0 chrIII 298782 . T C 1319 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;MQRankSum=-2.386;QD=11.47;ReadPosRankSum=2.407;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1352,144,0 chrIII 298817 . T G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=2.518;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=0.287;QD=13.01;ReadPosRankSum=2.943;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1633,162,0 chrIII 298845 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=12.45;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1763,177,0 chrIII 298865 . T C 1781 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=13.81;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1814,183,0 chrIII 298866 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;MQRankSum=-1.732;QD=13.57;ReadPosRankSum=1.705;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1797,183,0 chrIII 298878 . C G 1585 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=11.08;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:1618,168,0 chrIII 298891 . G C 1814 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=12.09;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:1847,198,0 chrIII 298922 . C A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=18.48;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3327,351,0 chrIII 298949 . A C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;QD=22.09;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3954,420,0 chrIII 298972 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;MQRankSum=-0.777;QD=25.60;ReadPosRankSum=1.695;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4736,481,0 chrIII 299084 . C G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=24.24;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4291,433,0 chrIII 299143 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=22.08;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3533,381,0 chrIII 299167 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=19.98;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2570,270,0 chrIII 299168 . G T 2414 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=19.47;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2447,270,0 chrIII 299181 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=18.38;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2202,231,0 chrIII 299184 . C A 2146 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=18.82;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2179,228,0 chrIII 299204 . T A 1817 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=16.52;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1850,186,0 chrIII 299205 . T A 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.013;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;MQRankSum=-1.732;QD=16.78;ReadPosRankSum=1.701;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1896,189,0 chrIII 299226 . A T 134.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.852;DP=121;Dels=0.00;FS=11.996;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;MQRankSum=-0.537;QD=1.11;ReadPosRankSum=3.760;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:8,113:121:21:167,21,0 chrIII 299228 . T A 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=124;Dels=0.05;FS=6.110;HaplotypeScore=8.0557;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;MQRankSum=-1.440;QD=1.07;ReadPosRankSum=2.940;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:21:165,21,0 chrIII 299288 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=-0.069;QD=20.96;ReadPosRankSum=1.704;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2653,279,0 chrIII 299289 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=20.54;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2580,273,0 chrIII 299350 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=13.30;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1137,126,0 chrIII 299354 . C A 1079 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=12.55;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1112,126,0 chrIII 299373 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=12.72;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1114,129,0 chrIII 299384 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=12.89;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1090,129,0 chrIII 299403 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=17.37;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1701,183,0 chrIII 299448 . T A 2244 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=21.37;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2277,231,0 chrIII 299492 . C G 1567 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=18.88;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1600,168,0 chrIII 299514 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=17.66;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1446,159,0 chrIII 299539 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=18.54;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1349,150,0 chrIII 299556 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;MQRankSum=0.462;QD=17.51;ReadPosRankSum=1.675;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1101,123,0 chrIII 299560 . A C 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;MQRankSum=0.323;QD=18.07;ReadPosRankSum=1.674;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1099,123,0 chrIII 299619 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=22.53;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:889,90,0 chrIII 299624 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=19.45;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:93:889,93,0 chrIII 299717 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=6.133;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;MQRankSum=-0.222;QD=24.34;ReadPosRankSum=1.643;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1956,201,0 chrIII 299838 . A G 2121 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;MQRankSum=-1.320;QD=25.25;ReadPosRankSum=1.691;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2154,216,0 chrIII 299842 . G C 2037 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=24.25;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:2070,216,0 chrIII 299847 . G A 2039 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=24.57;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2072,219,0 chrIII 299902 . A T 1684 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=22.45;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1717,180,0 chrIII 299906 . A G 1587 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=20.88;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1620,165,0 chrIII 300047 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=89.7843;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;QD=12.30;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1423,144,0 chrIII 300109 . C A 1895 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=15.04;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1928,192,0 chrIII 300151 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DP=121;Dels=0.03;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.662;QD=19.09;ReadPosRankSum=2.303;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2343,240,0 chrIII 300168 . G C 2545 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=20.36;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2578,261,0 chrIII 300237 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=18.32;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3001,315,0 chrIII 300273 . A G 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=30.6418;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-1.713;QD=24.06;ReadPosRankSum=1.713;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4475,454,0 chrIII 300467 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.17;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3230,328,0 chrIII 300529 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.02;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3228,322,0 chrIII 300581 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.6459;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.942;QD=23.99;ReadPosRankSum=1.707;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3287,336,0 chrIII 300604 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.483;QD=23.31;ReadPosRankSum=1.704;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2923,300,0 chrIII 300677 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=23.68;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2188,228,0 chrIII 300695 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=24.60;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2321,234,0 chrIII 300759 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=27.05;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2792,280,0 chrIII 300850 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=22.41;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2005,201,0 chrIII 300866 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=19.65;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1959,201,0 chrIII 300877 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=17.49;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2044,210,0 chrIII 300900 . T A 1991 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=16.59;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2024,201,0 chrIII 300912 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=17.07;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2098,207,0 chrIII 301002 . C A 2674 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=27.01;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2707,270,0 chrIII 301079 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8413;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=25.57;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3656,364,0 chrIII 301423 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.91;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3642,364,0 chrIII 301448 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.9106;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.78;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3082,313,0 chrIII 301452 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.993;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.163;QD=20.49;ReadPosRankSum=2.415;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2983,301,0 chrIII 301654 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.86;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3159,316,0 chrIII 301727 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3092;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=22.72;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2986,303,0 chrIII 301738 . A C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=9.916;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.713;QD=19.17;ReadPosRankSum=2.861;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2410,267,0 chrIII 301748 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.18;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2434,249,0 chrIII 301769 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=17.37;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1961,201,0 chrIII 301864 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.16;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3455,349,0 chrIII 301887 . A C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.62;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3422,346,0 chrIII 301917 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=135;Dels=0.00;FS=6.253;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.564;QD=23.76;ReadPosRankSum=2.357;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3240,333,0 chrIII 302018 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.51;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4268,427,0 chrIII 302096 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.161;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.410;QD=22.96;ReadPosRankSum=2.233;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3674,376,0 chrIII 302150 . T A 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=141;Dels=0.00;FS=8.548;HaplotypeScore=13.5496;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.031;QD=23.68;ReadPosRankSum=3.260;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:3339,325,0 chrIII 302230 . G T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.81;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4775,466,0 chrIII 302465 . A G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.650;QD=23.33;ReadPosRankSum=1.639;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2646,262,0 chrIII 302475 . T G 2497 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=21.34;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2530,261,0 chrIII 302580 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=23.89;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3163,321,0 chrIII 302586 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=22.82;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3000,301,0 chrIII 302608 . C G 2420 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.51;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2453,255,0 chrIII 302630 . C G 1690 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=19.43;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1723,174,0 chrIII 302700 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=25.40;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2090,213,0 chrIII 302768 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=103;Dels=0.00;FS=17.602;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-0.664;QD=19.96;ReadPosRankSum=3.370;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:4,98:103:99:2089,216,0 chrIII 302772 . C A 2119 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.99;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2152,216,0 chrIII 302862 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.30;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2177,225,0 chrIII 302927 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=23.65;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1783,189,0 chrIII 302944 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=23.59;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1897,192,0 chrIII 302979 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=25.75;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1913,189,0 chrIII 302988 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=24.27;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1756,177,0 chrIII 303080 . C A 1816 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=1;QD=25.22;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1849,189,0 chrIII 303175 . G A 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.080;DP=67;Dels=0.00;FS=3.078;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=2;MQRankSum=-0.933;QD=23.42;ReadPosRankSum=-0.187;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1602,136,0 chrIII 303216 . T C 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=83.6095;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=2;MQRankSum=0.409;QD=21.21;ReadPosRankSum=1.693;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,90:94:99:2027,207,0 chrIII 303472 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=22.69;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2574,258,0 chrIII 303495 . C A 2342 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=21.69;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2375,243,0 chrIII 303499 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=20.85;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2326,237,0 chrIII 303524 . T C 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=7.240;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;MQRankSum=-0.090;QD=20.80;ReadPosRankSum=2.398;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2030,204,0 chrIII 303540 . A C 1741.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DP=103;Dels=0.00;FS=23.376;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=2.295;QD=16.91;ReadPosRankSum=2.400;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:9,94:103:2:1771,2,0 chrIII 303728 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=24.33;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1444,144,0 chrIII 303749 . G A 1280 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;QD=25.60;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1313,132,0 chrIII 303754 . A G 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;MQRankSum=-0.898;QD=24.69;ReadPosRankSum=2.354;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1292,129,0 chrIII 303762 . C G 1322 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=22.41;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1355,138,0 chrIII 303779 . C G 1532 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=22.53;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1565,162,0 chrIII 303780 . C A 1592 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=23.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1625,159,0 chrIII 303795 . C T 1643 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1676,171,0 chrIII 303821 . C T 1571 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=18.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1604,171,0 chrIII 303851 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=19.56;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1246,129,0 chrIII 303853 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=19.68;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1253,129,0 chrIII 303862 . A G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;MQRankSum=-0.911;QD=15.39;ReadPosRankSum=2.369;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:2,59:61:99:972,102,0 chrIII 303884 . C T 538 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=14.94;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:60:571,60,0 chrIII 303922 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=3.23;SB=-3.047e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:74,9,0 chrIII 303967 . G A 557 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=3;QD=14.66;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:38:60:590,60,0 chrIII 304102 . A G 2737 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=130;Dels=0.00;FS=37.433;HaplotypeScore=10.6009;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=5;MQRankSum=2.504;QD=21.05;ReadPosRankSum=2.358;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2770,294,0 chrIII 304103 . G A 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.893;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.0782;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=6;MQRankSum=-2.830;QD=1.70;ReadPosRankSum=-0.024;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:86,38:124:99:241,0,2040 chrIII 304160 . T C 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.948;DP=142;Dels=0.00;FS=37.998;HaplotypeScore=3.0453;MLEAC=1;MLEAF=0.500;MQ=49.63;MQ0=4;MQRankSum=-4.533;QD=2.85;ReadPosRankSum=1.299;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,47:142:99:434,0,2026 chrIII 304198 . G T 779.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=174;Dels=0.00;FS=47.271;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=2;MQRankSum=-6.849;QD=4.48;ReadPosRankSum=-0.137;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:107,65:174:99:809,0,2337 chrIII 304204 . C T 567.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;DP=162;Dels=0.00;FS=33.174;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=2;MQRankSum=-7.532;QD=3.50;ReadPosRankSum=1.226;SB=-2.570e+02 GT:AD:DP:GQ:PL 0/1:104,58:162:99:597,0,2289 chrIII 304205 . A G 532.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=163;Dels=0.00;FS=33.194;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=2;MQRankSum=-7.564;QD=3.26;ReadPosRankSum=1.565;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:105,57:163:99:562,0,2326 chrIII 304218 . A G 509.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;DP=173;Dels=0.00;FS=30.806;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=52.47;MQ0=1;MQRankSum=-8.432;QD=2.94;ReadPosRankSum=0.686;SB=-3.060e+02 GT:AD:DP:GQ:PL 0/1:110,63:173:99:539,0,2604 chrIII 304299 . C T 366.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;DP=202;Dels=0.00;FS=19.829;HaplotypeScore=12.5347;MLEAC=1;MLEAF=0.500;MQ=49.56;MQ0=0;MQRankSum=-7.231;QD=1.81;ReadPosRankSum=-0.955;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:132,69:202:99:396,0,1870 chrIII 304317 . G T 665.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.927;DP=211;Dels=0.00;FS=17.838;HaplotypeScore=13.5561;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=0;MQRankSum=-8.356;QD=3.15;ReadPosRankSum=-0.865;SB=-6.180e+02 GT:AD:DP:GQ:PL 0/1:124,83:211:99:695,0,2002 chrIII 304326 . G A 647.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;DP=223;Dels=0.00;FS=13.727;HaplotypeScore=20.1077;MLEAC=1;MLEAF=0.500;MQ=49.33;MQ0=0;MQRankSum=-8.034;QD=2.90;ReadPosRankSum=0.407;SB=-6.840e+02 GT:AD:DP:GQ:PL 0/1:132,91:223:99:677,0,2130 chrIII 304425 . C T 2326.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.3418;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=-1.766;QD=8.58;ReadPosRankSum=-1.511;SB=-9.740e+02 GT:AD:DP:GQ:PL 0/1:143,128:271:99:2356,0,3289 chrIII 304520 . G T 2678.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.564;DP=289;Dels=0.00;FS=0.925;HaplotypeScore=23.3186;MLEAC=1;MLEAF=0.500;MQ=56.31;MQ0=0;MQRankSum=-1.588;QD=9.27;ReadPosRankSum=0.478;SB=-1.258e+03 GT:AD:DP:GQ:PL 0/1:154,132:289:99:2708,0,3101 chrIII 304760 . C A 3292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.011;DP=356;Dels=0.00;FS=0.395;HaplotypeScore=22.8895;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=6;MQRankSum=-1.716;QD=9.25;ReadPosRankSum=-0.256;SB=-1.457e+03 GT:AD:DP:GQ:PL 0/1:189,166:356:99:3292,0,3680 chrIII 304787 . T A 2482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.559;DP=365;Dels=0.00;FS=13.880;HaplotypeScore=14.5360;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=24;MQRankSum=-1.072;QD=6.80;ReadPosRankSum=0.189;SB=-8.120e+02 GT:AD:DP:GQ:PL 0/1:198,167:365:99:2512,0,3876 chrIII 304825 . G C 1899.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DP=380;Dels=0.00;FS=77.417;HaplotypeScore=31.4546;MLEAC=1;MLEAF=0.500;MQ=55.99;MQ0=33;MQRankSum=-1.391;QD=5.00;ReadPosRankSum=-0.318;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:212,162:380:99:1929,0,4155 chrIII 304919 . G C 1339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.262;DP=348;Dels=0.00;FS=73.643;HaplotypeScore=22.2728;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=18;MQRankSum=-3.712;QD=3.85;ReadPosRankSum=1.300;SB=-4.530e+02 GT:AD:DP:GQ:PL 0/1:210,134:348:99:1369,0,3997 chrIII 304990 . C T 379.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.168;DP=290;Dels=0.00;FS=5.926;HaplotypeScore=18.8982;MLEAC=1;MLEAF=0.500;MQ=47.92;MQ0=47;MQRankSum=-5.985;QD=1.31;ReadPosRankSum=-1.044;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:194,94:290:99:409,0,4208 chrIII 305021 . C T 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DP=287;Dels=0.00;FS=2.310;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=50;MQRankSum=-8.910;QD=0.50;ReadPosRankSum=-0.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,88:287:99:174,0,4271 chrIII 305033 . A G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=274;Dels=0.00;FS=0.749;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=49.62;MQ0=46;MQRankSum=-8.946;QD=0.32;ReadPosRankSum=-1.145;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:197,77:274:99:117,0,4438 chrIII 305159 . A G 315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;DP=274;Dels=0.00;FS=28.973;HaplotypeScore=21.0643;MLEAC=1;MLEAF=0.500;MQ=41.92;MQ0=39;MQRankSum=-8.325;QD=1.15;ReadPosRankSum=0.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,82:274:99:345,0,3881 chrIII 305237 . A G 1118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.285;DP=287;Dels=0.00;FS=47.598;HaplotypeScore=18.0737;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=8;MQRankSum=-8.877;QD=3.90;ReadPosRankSum=2.418;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,95:287:99:1148,0,4193 chrIII 305240 . A T 1108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.785;DP=286;Dels=0.00;FS=53.824;HaplotypeScore=18.4518;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=8;MQRankSum=-8.947;QD=3.87;ReadPosRankSum=1.912;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,98:286:99:1138,0,3947 chrIII 305285 . G A 1091.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;DP=274;Dels=0.00;FS=61.506;HaplotypeScore=12.8680;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=3;MQRankSum=-8.514;QD=3.98;ReadPosRankSum=2.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,89:274:99:1121,0,4153 chrIII 305288 . G A 947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.556;DP=267;Dels=0.00;FS=62.066;HaplotypeScore=12.1936;MLEAC=1;MLEAF=0.500;MQ=53.09;MQ0=3;MQRankSum=-8.825;QD=3.55;ReadPosRankSum=2.418;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,85:267:99:977,0,3885 chrIII 305305 . G A 693.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.122;DP=286;Dels=0.00;FS=16.352;HaplotypeScore=18.6149;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=6;MQRankSum=-8.456;QD=2.42;ReadPosRankSum=0.959;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:207,77:286:99:723,0,4566 chrIII 305321 . C T 650.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DP=288;Dels=0.00;FS=22.559;HaplotypeScore=19.5529;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=10;MQRankSum=-9.001;QD=2.26;ReadPosRankSum=-2.671;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:214,74:288:99:680,0,4751 chrIII 305354 . C G 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;DP=272;Dels=0.00;FS=17.118;HaplotypeScore=20.1384;MLEAC=1;MLEAF=0.500;MQ=52.49;MQ0=14;MQRankSum=-8.588;QD=1.22;ReadPosRankSum=-1.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,58:272:99:361,0,4625 chrIII 305490 . C A 684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.601;DP=259;Dels=0.00;FS=28.164;HaplotypeScore=29.3849;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=6;MQRankSum=-9.584;QD=2.64;ReadPosRankSum=-1.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,75:259:99:714,0,3659 chrIII 305563 . G A 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DP=187;Dels=0.00;FS=30.781;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=53.76;MQ0=9;MQRankSum=-8.364;QD=1.39;ReadPosRankSum=-0.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,39:187:99:290,0,3174 chrIII 305618 . A G 2871.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=186;Dels=0.00;FS=60.278;HaplotypeScore=12.6577;MLEAC=1;MLEAF=0.500;MQ=46.14;MQ0=21;MQRankSum=7.155;QD=15.44;ReadPosRankSum=-1.082;SB=-1.276e+03 GT:AD:DP:GQ:PL 0/1:49,136:186:99:2901,0,283 chrIII 305933 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.89;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3676,379,0 chrIII 306561 . T C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=4.565;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.824;QD=21.60;ReadPosRankSum=1.698;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2279,228,0 chrIII 306575 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=23.36;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2299,228,0 chrIII 306783 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=23.35;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1714,180,0 chrIII 306967 . T A 537 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=19.18;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:63:570,63,0 chrIII 306972 . T G 362 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=15.74;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,21:23:42:395,42,0 chrIII 306974 . C T 360 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=18.95;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:42:393,42,0 chrIII 306992 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.72;MQ0=0;QD=8.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrIII 307158 . A T 61.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=4;QD=5.16;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:94,9,0 chrIII 307182 . T A 89.51 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=7;QD=5.27;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:122,12,0 chrIII 307233 . C G 30.77 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.47;MQ0=10;QD=2.05;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:62,6,0 chrIII 307247 . T C 29.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.07;MQ0=11;MQRankSum=0.736;QD=1.75;ReadPosRankSum=0.736;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:6:61,6,0 chrIII 307310 . G A 348 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=6;QD=7.57;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:39:381,39,0 chrIII 307325 . G A 405 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=19.70;MQ0=6;QD=7.94;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:45:438,45,0 chrIII 307376 . A T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;DP=28;Dels=0.00;FS=9.185;HaplotypeScore=11.0330;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=6;MQRankSum=0.141;QD=1.04;ReadPosRankSum=-1.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,9:28:59:59,0,169 chrIII 307443 . T C 599 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=2;QD=11.98;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:632,72,0 chrIII 307464 . C T 504.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=64;Dels=0.00;FS=45.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.07;MQ0=10;MQRankSum=2.440;QD=7.88;ReadPosRankSum=-0.726;SB=-1.133e+02 GT:AD:DP:GQ:PL 0/1:23,41:64:8:534,0,8 chrIII 307477 . T C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=80;Dels=0.00;FS=47.946;HaplotypeScore=7.7774;MLEAC=1;MLEAF=0.500;MQ=17.20;MQ0=12;MQRankSum=-1.029;QD=0.25;ReadPosRankSum=4.464;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,22:80:50:50,0,411 chrIII 307489 . C T 258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DP=74;Dels=0.00;FS=13.838;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.55;MQ0=16;MQRankSum=0.681;QD=3.49;ReadPosRankSum=1.656;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:32,42:74:99:288,0,178 chrIII 307527 . A T 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DP=101;Dels=0.00;FS=52.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.97;MQ0=58;MQRankSum=0.209;QD=1.67;ReadPosRankSum=4.961;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:37,64:101:99:199,0,119 chrIII 307531 . A G 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;DP=101;Dels=0.00;FS=47.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.47;MQ0=62;MQRankSum=0.070;QD=0.81;ReadPosRankSum=-3.282;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:67,33:101:99:112,0,199 chrIII 307547 . A G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=95;Dels=0.00;FS=33.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.58;MQ0=61;MQRankSum=0.416;QD=0.57;ReadPosRankSum=0.867;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:71,24:95:84:84,0,202 chrIII 307548 . C T 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DP=94;Dels=0.00;FS=37.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.60;MQ0=61;MQRankSum=-0.054;QD=0.65;ReadPosRankSum=0.633;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:70,24:94:91:91,0,202 chrIII 307595 . A T 235 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.43;MQ0=72;QD=2.06;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:33,81:114:33:268,33,0 chrIII 307630 . G A 315 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=89;Dels=0.00;FS=129.441;HaplotypeScore=16.7981;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=34;MQRankSum=2.206;QD=3.54;ReadPosRankSum=4.657;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:63,26:89:42:348,42,0 chrIII 307641 . T A 275 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DP=76;Dels=0.00;FS=81.328;HaplotypeScore=13.6345;MLEAC=2;MLEAF=1.00;MQ=15.46;MQ0=29;MQRankSum=2.841;QD=3.62;ReadPosRankSum=3.458;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:51,25:76:36:308,36,0 chrIII 307653 . G A 253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.935;DP=62;Dels=0.00;FS=40.364;HaplotypeScore=6.3127;MLEAC=2;MLEAF=1.00;MQ=16.31;MQ0=25;MQRankSum=1.303;QD=4.08;ReadPosRankSum=-0.383;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:38,24:62:33:286,33,0 chrIII 307681 . T C 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;DP=87;Dels=0.00;FS=54.039;HaplotypeScore=21.9785;MLEAC=1;MLEAF=0.500;MQ=17.83;MQ0=27;MQRankSum=0.898;QD=0.77;ReadPosRankSum=-1.223;SB=-1.780e+02 GT:AD:DP:GQ:PL 0/1:36,51:87:27:97,0,27 chrIII 307685 . A C 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DP=88;Dels=0.00;FS=62.945;HaplotypeScore=20.4012;MLEAC=1;MLEAF=0.500;MQ=17.12;MQ0=32;MQRankSum=1.114;QD=0.75;ReadPosRankSum=-1.712;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:34,46:88:27:96,0,27 chrIII 307852 . A G 4007.01 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3735;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=2;QD=22.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4007,456,0 chrIII 310319 . G C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3420,349,0 chrIII 311036 . A C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=7.970;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.339;QD=25.33;ReadPosRankSum=2.386;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4888,502,0 chrIII 311422 . A G 5334.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=1;QD=22.23;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5334,538,0 chrIII 311452 . G C 4654.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=1;QD=21.85;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4654,466,0 chrIII 311513 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=1;QD=23.74;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4701,478,0 chrIII 312423 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1727;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2258,219,0 chrIII 313040 . C A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.47;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3695,370,0 chrIII 313914 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=145;Dels=0.00;FS=3.027;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.794;QD=24.90;ReadPosRankSum=2.245;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3611,358,0 chrIII 314986 . T A 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.443;DP=164;Dels=0.00;FS=7.633;HaplotypeScore=14.4168;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=-0.239;QD=20.18;ReadPosRankSum=3.778;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3310,322,0 chrIII 315663 . A G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.054;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=19.5137;MLEAC=1;MLEAF=0.500;MQ=21.18;MQ0=1;MQRankSum=-3.777;QD=1.59;ReadPosRankSum=2.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,15:29:76:76,0,172 chrIII 315677 . A T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=12.4235;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=1;MQRankSum=-3.949;QD=1.33;ReadPosRankSum=2.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,14:27:66:66,0,236 chrIII 315787 . A T 426 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;QD=11.51;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:459,48,0 chrIII 315788 . G A 402.02 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=0;MQRankSum=1.118;QD=10.58;ReadPosRankSum=2.830;SB=-2.367e+02 GT:AD:DP:GQ:PL 1/1:4,34:38:25:435,25,0 chrIII 315796 . G T 209.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=33;Dels=0.00;FS=1.686;HaplotypeScore=2.7855;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=1;MQRankSum=0.869;QD=6.33;ReadPosRankSum=3.663;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:16,17:33:74:239,0,74 chrIII 315798 . A C 196.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;DP=35;Dels=0.00;FS=9.834;HaplotypeScore=6.6197;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=1;MQRankSum=1.977;QD=5.60;ReadPosRankSum=4.648;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:20,15:35:99:226,0,103 chrIII 315799 . T G 186.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DP=36;Dels=0.00;FS=7.018;HaplotypeScore=6.6197;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=1;MQRankSum=2.017;QD=5.17;ReadPosRankSum=4.183;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:21,15:36:99:216,0,104 chrIII 315802 . T A 189.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DP=43;Dels=0.00;FS=11.679;HaplotypeScore=23.7927;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=1;MQRankSum=1.890;QD=4.40;ReadPosRankSum=3.727;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:28,15:43:99:219,0,127 chrIII 315803 . G A 192.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;DP=45;Dels=0.00;FS=10.549;HaplotypeScore=23.7927;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=1;MQRankSum=1.548;QD=4.27;ReadPosRankSum=2.832;SB=-2.102e+01 GT:AD:DP:GQ:PL 0/1:18,15:45:47:222,0,47 chrIII 315810 . G A 127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=49;Dels=0.00;FS=5.413;HaplotypeScore=32.7247;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=2;MQRankSum=3.208;QD=2.59;ReadPosRankSum=4.697;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:37,12:49:99:157,0,197 chrIII 315846 . T C 268.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DP=85;Dels=0.00;FS=19.589;HaplotypeScore=91.6725;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=3;MQRankSum=2.019;QD=3.15;ReadPosRankSum=-0.234;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:64,21:85:99:298,0,453 chrIII 315847 . G A 630.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=97.3475;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=3;MQRankSum=4.179;QD=7.33;ReadPosRankSum=-1.387;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:34,51:86:78:660,0,78 chrIII 315854 . C T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=82;Dels=0.00;FS=5.853;HaplotypeScore=91.0679;MLEAC=1;MLEAF=0.500;MQ=21.23;MQ0=3;MQRankSum=0.619;QD=0.20;ReadPosRankSum=-2.555;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:62,15:82:46:46,0,614 chrIII 315858 . A T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.071;DP=87;Dels=0.00;FS=25.942;HaplotypeScore=47.6672;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=3;MQRankSum=3.633;QD=0.15;ReadPosRankSum=-5.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,11:87:43:43,0,674 chrIII 315881 . A T 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;DP=96;Dels=0.00;FS=47.221;HaplotypeScore=46.1424;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=3;MQRankSum=4.108;QD=0.68;ReadPosRankSum=-0.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,12:96:95:95,0,564 chrIII 315884 . A G 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;DP=91;Dels=0.00;FS=14.344;HaplotypeScore=133.1054;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=3;MQRankSum=0.022;QD=0.98;ReadPosRankSum=-1.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,28:91:99:119,0,505 chrIII 315893 . G A 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DP=81;Dels=0.00;FS=10.072;HaplotypeScore=162.5527;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=2;MQRankSum=4.611;QD=1.43;ReadPosRankSum=3.066;SB=-3.060e+02 GT:AD:DP:GQ:PL 0/1:51,30:81:99:146,0,444 chrIII 315903 . A C 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DP=66;Dels=0.00;FS=52.893;HaplotypeScore=92.6577;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=1;MQRankSum=3.818;QD=1.67;ReadPosRankSum=3.891;SB=-6.175e-03 GT:AD:DP:GQ:PL 0/1:29,16:66:99:140,0,313 chrIII 315909 . A T 375.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=65;Dels=0.00;FS=1.382;HaplotypeScore=39.8314;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=1;MQRankSum=2.468;QD=5.77;ReadPosRankSum=1.618;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:11,54:65:46:405,0,46 chrIII 315930 . G A 205.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010;DP=40;Dels=0.00;FS=15.119;HaplotypeScore=7.7037;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;MQRankSum=1.588;QD=5.13;ReadPosRankSum=2.261;SB=-6.520e+01 GT:AD:DP:GQ:PL 1/1:2,24:40:8:237,8,0 chrIII 315932 . A C 232.01 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.7303;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=5.95;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:27:265,27,0 chrIII 315947 . T C 64.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;DP=36;Dels=0.00;FS=62.176;HaplotypeScore=4.6473;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=0;MQRankSum=-0.206;QD=1.78;ReadPosRankSum=4.327;SB=0.036 GT:AD:DP:GQ:PL 0/1:25,11:36:17:94,0,17 chrIII 315956 . C T 44.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=47;Dels=0.00;FS=54.401;HaplotypeScore=8.6772;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=9;MQRankSum=1.481;QD=0.94;ReadPosRankSum=3.637;SB=-4.941e-02 GT:AD:DP:GQ:PL 0/1:35,11:47:17:74,0,17 chrIII 315989 . C G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DP=59;Dels=0.00;FS=13.336;HaplotypeScore=23.2259;MLEAC=1;MLEAF=0.500;MQ=18.49;MQ0=24;MQRankSum=-0.953;QD=1.71;ReadPosRankSum=2.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,15:59:99:131,0,129 chrIII 315990 . G A 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.519;DP=58;Dels=0.00;FS=11.729;HaplotypeScore=23.0199;MLEAC=1;MLEAF=0.500;MQ=18.25;MQ0=24;MQRankSum=-0.129;QD=1.74;ReadPosRankSum=2.450;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:35,22:58:99:131,0,128 chrIII 316050 . G A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;DP=220;Dels=0.00;FS=6.077;HaplotypeScore=71.0925;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=17;MQRankSum=1.056;QD=1.05;ReadPosRankSum=1.631;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:178,41:220:99:262,0,2437 chrIII 316056 . G A 1631.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.230;DP=225;Dels=0.00;FS=26.212;HaplotypeScore=81.8207;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=8;MQRankSum=-0.463;QD=7.25;ReadPosRankSum=-2.051;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:104,120:224:99:1661,0,1474 chrIII 316082 . A G 396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DP=286;Dels=0.00;FS=10.555;HaplotypeScore=185.2764;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=2;MQRankSum=-0.502;QD=1.38;ReadPosRankSum=-7.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,66:286:99:426,0,4212 chrIII 316095 . T G 1013.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.424;DP=263;Dels=0.00;FS=50.192;HaplotypeScore=14.5290;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=1;MQRankSum=0.557;QD=3.85;ReadPosRankSum=1.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,85:263:99:1043,0,3103 chrIII 316096 . T C 949.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270;DP=262;Dels=0.00;FS=43.092;HaplotypeScore=21.3641;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=1;MQRankSum=0.459;QD=3.62;ReadPosRankSum=1.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,83:262:99:979,0,3130 chrIII 316158 . C A 1001 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.919;DP=104;Dels=0.00;FS=17.445;HaplotypeScore=108.0607;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;MQRankSum=0.910;QD=9.62;ReadPosRankSum=-1.624;SB=-4.399e+01 GT:AD:DP:GQ:PL 1/1:14,90:104:99:1034,108,0 chrIII 316159 . C T 953 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=103;Dels=0.00;FS=24.265;HaplotypeScore=108.0607;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;MQRankSum=1.300;QD=9.25;ReadPosRankSum=2.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,88:103:99:986,102,0 chrIII 316164 . A G 219.64 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=96;Dels=0.00;FS=14.444;HaplotypeScore=64.8122;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=0;MQRankSum=-0.296;QD=2.29;ReadPosRankSum=-4.229;SB=2.36 GT:AD:DP:GQ:PL 1/1:78,18:96:11:252,11,0 chrIII 316174 . A G 296.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=86;Dels=0.00;FS=121.918;HaplotypeScore=31.5760;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;MQRankSum=3.648;QD=3.45;ReadPosRankSum=3.078;SB=-3.055e+01 GT:AD:DP:GQ:PL 1/1:23,60:86:2:326,2,0 chrIII 316179 . A G 263.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.564;DP=93;Dels=0.00;FS=135.005;HaplotypeScore=55.3146;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=0;MQRankSum=4.012;QD=2.83;ReadPosRankSum=3.964;SB=-1.802e+01 GT:AD:DP:GQ:PL 0/1:36,56:93:28:293,0,28 chrIII 316194 . G A 137.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;DP=124;Dels=0.00;FS=93.730;HaplotypeScore=168.5337;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=0;MQRankSum=5.040;QD=1.10;ReadPosRankSum=2.096;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:62,62:124:99:167,0,185 chrIII 316205 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DP=162;Dels=0.00;FS=28.872;HaplotypeScore=79.2459;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=1;MQRankSum=-0.396;QD=0.12;ReadPosRankSum=0.969;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,13:162:50:50,0,733 chrIII 316221 . G A 155.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=194;Dels=0.00;FS=4.429;HaplotypeScore=63.5269;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=2;MQRankSum=-7.143;QD=0.80;ReadPosRankSum=2.386;SB=-3.890e+02 GT:AD:DP:GQ:PL 0/1:75,119:194:99:185,0,727 chrIII 316223 . A G 315.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.200;DP=205;Dels=0.00;FS=1.910;HaplotypeScore=73.0510;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=2;MQRankSum=-6.839;QD=1.54;ReadPosRankSum=2.714;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:64,139:205:99:345,0,638 chrIII 316228 . T C 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=267;Dels=0.00;FS=0.573;HaplotypeScore=64.9809;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=5;MQRankSum=2.607;QD=0.61;ReadPosRankSum=-2.121;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:212,54:267:99:194,0,1211 chrIII 316239 . C T 1419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=324;Dels=0.00;FS=2.068;HaplotypeScore=24.7684;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=9;MQRankSum=-3.032;QD=4.38;ReadPosRankSum=2.691;SB=-1.547e+03 GT:AD:DP:GQ:PL 0/1:101,223:324:99:1449,0,961 chrIII 316257 . T C 1136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;DP=398;Dels=0.00;FS=11.495;HaplotypeScore=314.7334;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=25;MQRankSum=10.322;QD=2.85;ReadPosRankSum=-0.031;SB=-9.500e+02 GT:AD:DP:GQ:PL 0/1:286,112:398:99:1166,0,2149 chrIII 316258 . A G 1198.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DP=400;Dels=0.00;FS=11.495;HaplotypeScore=316.7042;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=25;MQRankSum=9.877;QD=3.00;ReadPosRankSum=-0.125;SB=-9.090e+02 GT:AD:DP:GQ:PL 0/1:286,112:400:99:1228,0,2167 chrIII 316262 . T A 275.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.851;DP=402;Dels=0.00;FS=6.071;HaplotypeScore=318.0520;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=28;MQRankSum=-10.439;QD=0.68;ReadPosRankSum=0.641;SB=-3.550e+02 GT:AD:DP:GQ:PL 0/1:237,165:402:99:305,0,3148 chrIII 316263 . G A 1059.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;DP=405;Dels=0.00;FS=14.888;HaplotypeScore=322.7976;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=28;MQRankSum=10.430;QD=2.61;ReadPosRankSum=-0.622;SB=-7.420e+02 GT:AD:DP:GQ:PL 0/1:292,113:405:99:1089,0,2201 chrIII 316270 . C G 1260.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DP=395;Dels=0.00;FS=13.591;HaplotypeScore=305.6302;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=28;MQRankSum=10.478;QD=3.19;ReadPosRankSum=-2.654;SB=-1.062e+03 GT:AD:DP:GQ:PL 0/1:278,117:395:99:1290,0,2395 chrIII 316288 . G C 965.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=421;Dels=0.00;FS=11.019;HaplotypeScore=29.5551;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=30;MQRankSum=8.423;QD=2.29;ReadPosRankSum=1.302;SB=-8.650e+02 GT:AD:DP:GQ:PL 0/1:317,99:421:99:995,0,2883 chrIII 316290 . C G 900.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.308;DP=425;Dels=0.00;FS=13.315;HaplotypeScore=27.4783;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=30;MQRankSum=9.657;QD=2.12;ReadPosRankSum=1.444;SB=-9.320e+02 GT:AD:DP:GQ:PL 0/1:324,99:425:99:930,0,3058 chrIII 316296 . G C 681.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=416;Dels=0.00;FS=14.093;HaplotypeScore=23.7651;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=29;MQRankSum=8.623;QD=1.64;ReadPosRankSum=2.088;SB=-6.900e+02 GT:AD:DP:GQ:PL 0/1:326,90:416:99:711,0,3393 chrIII 316339 . A T 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.133;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=104.4278;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=18;MQRankSum=5.144;QD=0.88;ReadPosRankSum=-7.138;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:208,38:249:99:249,0,2229 chrIII 316362 . T G 842.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.210;DP=169;Dels=0.00;FS=232.401;HaplotypeScore=29.7491;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=6;MQRankSum=5.451;QD=4.98;ReadPosRankSum=3.614;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,57:169:99:872,0,888 chrIII 316382 . G A 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DP=103;Dels=0.00;FS=1.118;HaplotypeScore=15.5366;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=4;MQRankSum=2.608;QD=1.06;ReadPosRankSum=-3.631;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:86,17:103:99:139,0,615 chrIII 316422 . G A 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=224;Dels=0.00;FS=5.447;HaplotypeScore=59.4996;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=15;MQRankSum=3.111;QD=0.71;ReadPosRankSum=2.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,34:224:99:189,0,2547 chrIII 316423 . G A 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;DP=222;Dels=0.00;FS=15.879;HaplotypeScore=69.3110;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=16;MQRankSum=1.259;QD=0.30;ReadPosRankSum=1.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,32:222:97:97,0,2703 chrIII 316428 . G A 291.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;DP=225;Dels=0.00;FS=4.506;HaplotypeScore=55.9696;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=19;MQRankSum=-1.845;QD=1.29;ReadPosRankSum=0.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,57:224:99:321,0,2698 chrIII 316433 . G A 671.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.908;DP=240;Dels=0.00;FS=2.289;HaplotypeScore=40.2063;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=20;MQRankSum=0.024;QD=2.80;ReadPosRankSum=-2.012;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:171,67:240:99:701,0,2708 chrIII 316499 . A G 669.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.946;DP=238;Dels=0.00;FS=71.636;HaplotypeScore=252.8128;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=11;MQRankSum=-1.629;QD=2.81;ReadPosRankSum=2.689;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:137,101:238:99:699,0,1873 chrIII 316502 . A T 516.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DP=226;Dels=0.00;FS=55.872;HaplotypeScore=205.3565;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=11;MQRankSum=-1.468;QD=2.28;ReadPosRankSum=2.317;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:124,70:225:99:546,0,1759 chrIII 316506 . G A 365.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.223;DP=202;Dels=0.00;FS=52.972;HaplotypeScore=253.2239;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=7;MQRankSum=2.793;QD=1.81;ReadPosRankSum=-0.925;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,40:202:99:395,0,1729 chrIII 316507 . G A 348.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;DP=200;Dels=0.00;FS=52.610;HaplotypeScore=257.8170;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=7;MQRankSum=3.404;QD=1.74;ReadPosRankSum=-1.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,39:200:99:378,0,1622 chrIV 149 . C T 68.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;DP=92;Dels=0.00;FS=39.579;HaplotypeScore=116.8580;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=10;MQRankSum=2.048;QD=0.74;ReadPosRankSum=1.980;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:51,38:92:10:98,0,10 chrIV 291 . C T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DP=23;Dels=0.04;FS=11.635;HaplotypeScore=24.3812;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=4;MQRankSum=0.400;QD=0.74;ReadPosRankSum=0.844;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:13,9:22:47:47,0,68 chrIV 294 . T C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;DP=25;Dels=0.04;FS=16.107;HaplotypeScore=24.4654;MLEAC=1;MLEAF=0.500;MQ=19.48;MQ0=6;MQRankSum=-0.609;QD=0.68;ReadPosRankSum=0.515;SB=-3.704e+01 GT:AD:DP:GQ:PL 0/1:15,9:24:47:47,0,63 chrIV 296 . A C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.388;DP=26;Dels=0.04;FS=16.107;HaplotypeScore=23.5282;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=7;MQRankSum=-0.609;QD=0.66;ReadPosRankSum=0.796;SB=-3.704e+01 GT:AD:DP:GQ:PL 0/1:15,6:25:47:47,0,67 chrIV 1454 . A G 600 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.017;DP=188;Dels=0.00;FS=37.072;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=9.91;MQ0=141;MQRankSum=3.272;QD=3.19;ReadPosRankSum=1.449;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:141,47:188:69:633,69,0 chrIV 1459 . T C 626 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DP=187;Dels=0.00;FS=37.450;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.16;MQ0=139;MQRankSum=2.980;QD=3.35;ReadPosRankSum=0.701;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:138,48:187:72:659,72,0 chrIV 1463 . C T 599 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=184;Dels=0.00;FS=36.686;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.91;MQ0=138;MQRankSum=3.089;QD=3.26;ReadPosRankSum=0.398;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:138,45:184:69:632,69,0 chrIV 1511 . C A 97.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.964;DP=121;Dels=0.00;FS=27.002;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=7.16;MQ0=94;MQRankSum=1.909;QD=0.80;ReadPosRankSum=-1.190;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:101,20:121:18:130,18,0 chrIV 1525 . G C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DP=87;Dels=0.00;FS=11.553;HaplotypeScore=4.1607;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=73;MQRankSum=3.204;QD=0.38;ReadPosRankSum=3.204;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:77,7:87:9:65,9,0 chrIV 1612 . T C 829 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=65;Dels=0.00;FS=21.512;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=24;MQRankSum=3.229;QD=12.75;ReadPosRankSum=1.648;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:28,37:65:96:862,96,0 chrIV 1633 . T G 892 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=32;MQRankSum=1.895;QD=10.75;ReadPosRankSum=2.350;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:2,47:83:99:925,108,0 chrIV 1635 . G T 913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;DP=83;Dels=0.00;FS=3.939;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=32;MQRankSum=2.820;QD=11.00;ReadPosRankSum=1.139;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:36,47:83:99:946,108,0 chrIV 1647 . C T 922 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=83;Dels=0.00;FS=3.939;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=32;MQRankSum=3.101;QD=11.11;ReadPosRankSum=0.858;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:36,47:83:99:955,108,0 chrIV 1993 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=20;MQRankSum=-0.965;QD=1.29;ReadPosRankSum=-1.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,19:75:99:127,0,501 chrIV 2002 . C T 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=14;MQRankSum=-0.503;QD=2.26;ReadPosRankSum=-0.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,27:85:99:222,0,523 chrIV 2008 . T G 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=12;MQRankSum=0.470;QD=2.36;ReadPosRankSum=-0.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,32:87:99:235,0,509 chrIV 2009 . A G 200.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=11;MQRankSum=1.920;QD=2.33;ReadPosRankSum=-0.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,32:86:99:230,0,467 chrIV 2035 . G T 510.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;DP=130;Dels=0.00;FS=3.200;HaplotypeScore=6.5374;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=13;MQRankSum=0.401;QD=3.92;ReadPosRankSum=-0.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,64:130:99:540,0,752 chrIV 2045 . C T 373.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=140;Dels=0.00;FS=3.010;HaplotypeScore=6.5404;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=16;MQRankSum=-1.652;QD=2.66;ReadPosRankSum=-0.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,63:140:99:403,0,1012 chrIV 2046 . T G 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7517;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=19;MQRankSum=-1.213;QD=2.47;ReadPosRankSum=0.284;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,62:144:99:386,0,995 chrIV 2060 . G C 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=153;Dels=0.00;FS=3.044;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=21;MQRankSum=-1.331;QD=2.14;ReadPosRankSum=-0.771;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,66:153:99:358,0,1170 chrIV 2062 . C T 379.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=154;Dels=0.00;FS=3.043;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=21;MQRankSum=-0.655;QD=2.46;ReadPosRankSum=-0.443;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,66:154:99:409,0,1227 chrIV 2066 . G T 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.784;DP=159;Dels=0.00;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=22;MQRankSum=-1.634;QD=2.31;ReadPosRankSum=-0.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,69:159:99:397,0,1194 chrIV 2072 . T C 375.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;DP=162;Dels=0.00;FS=3.041;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=24;MQRankSum=-2.323;QD=2.31;ReadPosRankSum=-0.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,68:162:99:405,0,1279 chrIV 2076 . G A 291.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;DP=167;Dels=0.00;FS=6.559;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=25;MQRankSum=-1.655;QD=1.74;ReadPosRankSum=-1.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,76:167:99:321,0,1241 chrIV 2087 . A G 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DP=159;Dels=0.00;FS=6.954;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=26;MQRankSum=-2.765;QD=2.58;ReadPosRankSum=-1.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,76:159:99:440,0,1076 chrIV 2112 . T C 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897;DP=139;Dels=0.00;FS=1.882;HaplotypeScore=3.6479;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=23;MQRankSum=-2.644;QD=2.12;ReadPosRankSum=1.515;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:65,74:139:99:325,0,914 chrIV 2135 . G A 752 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DP=116;Dels=0.00;FS=11.139;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=25;MQRankSum=1.656;QD=6.48;ReadPosRankSum=0.666;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:11,105:116:84:785,84,0 chrIV 2140 . C T 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.766;DP=115;Dels=0.00;FS=7.015;HaplotypeScore=3.3471;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=22;MQRankSum=2.440;QD=1.45;ReadPosRankSum=-1.943;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,17:115:99:197,0,541 chrIV 2151 . C T 664 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=2.9475;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=18;QD=6.99;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:6,88:94:78:697,78,0 chrIV 2152 . T G 663 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9475;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=18;MQRankSum=0.533;QD=6.91;ReadPosRankSum=-1.377;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:7,89:96:81:696,81,0 chrIV 2156 . C A 929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3135;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=18;QD=8.76;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:6,98:106:99:962,102,0 chrIV 2228 . A T 1489.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.043;DP=228;Dels=0.00;FS=49.415;HaplotypeScore=15.7511;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=0;MQRankSum=-3.803;QD=6.53;ReadPosRankSum=0.749;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:139,89:228:99:1519,0,2915 chrIV 2230 . T C 1585.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.409;DP=232;Dels=0.00;FS=58.211;HaplotypeScore=16.5398;MLEAC=1;MLEAF=0.500;MQ=39.75;MQ0=0;MQRankSum=-4.011;QD=6.83;ReadPosRankSum=1.435;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:142,89:232:99:1615,0,3037 chrIV 2443 . C T 249.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.915;DP=159;Dels=0.00;FS=41.296;HaplotypeScore=4.7643;MLEAC=1;MLEAF=0.500;MQ=40.80;MQ0=17;MQRankSum=-6.926;QD=1.57;ReadPosRankSum=2.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,29:159:99:279,0,2439 chrIV 2445 . T C 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;DP=159;Dels=0.00;FS=38.169;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=19;MQRankSum=-6.746;QD=1.48;ReadPosRankSum=1.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,29:159:99:265,0,2547 chrIV 2447 . C A 250.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.414;DP=159;Dels=0.00;FS=35.294;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=39.84;MQ0=22;MQRankSum=-6.900;QD=1.57;ReadPosRankSum=1.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,29:159:99:280,0,2232 chrIV 2449 . G A 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;DP=158;Dels=0.00;FS=34.935;HaplotypeScore=5.6077;MLEAC=1;MLEAF=0.500;MQ=39.89;MQ0=22;MQRankSum=-6.641;QD=1.51;ReadPosRankSum=1.344;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,29:158:99:269,0,2302 chrIV 2461 . T A 263.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.624;DP=170;Dels=0.00;FS=26.952;HaplotypeScore=5.4548;MLEAC=1;MLEAF=0.500;MQ=37.33;MQ0=32;MQRankSum=-7.008;QD=1.55;ReadPosRankSum=0.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,33:170:99:293,0,2087 chrIV 2462 . A G 246.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;DP=172;Dels=0.00;FS=26.877;HaplotypeScore=4.6227;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=33;MQRankSum=-5.680;QD=1.43;ReadPosRankSum=0.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,33:172:99:276,0,2201 chrIV 2463 . T C 285.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447;DP=172;Dels=0.00;FS=26.952;HaplotypeScore=4.6227;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=33;MQRankSum=-6.614;QD=1.66;ReadPosRankSum=0.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,33:172:99:315,0,2223 chrIV 2473 . C A 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.480;DP=172;Dels=0.00;FS=16.776;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=37;MQRankSum=-6.334;QD=1.78;ReadPosRankSum=-0.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,35:172:99:337,0,1889 chrIV 2477 . C T 328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=173;Dels=0.00;FS=14.327;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=34.61;MQ0=41;MQRankSum=-6.201;QD=1.90;ReadPosRankSum=-0.562;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,33:173:99:358,0,1855 chrIV 2488 . T A 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=50;MQRankSum=-3.914;QD=0.42;ReadPosRankSum=2.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,18:165:99:99,0,1852 chrIV 2489 . T C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=52;MQRankSum=-3.672;QD=0.39;ReadPosRankSum=2.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,18:167:95:95,0,1829 chrIV 2492 . A G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=53;MQRankSum=-5.074;QD=0.43;ReadPosRankSum=2.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,18:165:99:101,0,1662 chrIV 2493 . A G 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=53;MQRankSum=-4.131;QD=0.45;ReadPosRankSum=2.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,18:166:99:105,0,1657 chrIV 2495 . C A 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=53;MQRankSum=-3.482;QD=0.50;ReadPosRankSum=0.983;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,21:166:99:113,0,1542 chrIV 2584 . C A 1788 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4054;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=4;QD=19.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1821,180,0 chrIV 5408 . A T 748 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=29;QD=9.23;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:81:781,81,0 chrIV 5517 . C T 2197 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0662;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=6;MQRankSum=-1.088;QD=16.15;ReadPosRankSum=0.926;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2230,237,0 chrIV 5857 . A G 422 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=14.01;MQ0=41;QD=4.59;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:51:455,51,0 chrIV 16306 . C T 1973 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=14.24;MQ0=288;QD=4.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:220,182:403:99:2006,216,0 chrIV 16362 . A G 4296.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=224;QD=10.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:161,237:399:99:4296,436,0 chrIV 16839 . G A 1964 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=142;Dels=0.00;FS=16.021;HaplotypeScore=6.0564;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=21;MQRankSum=1.674;QD=13.83;ReadPosRankSum=-0.375;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,138:142:99:1997,207,0 chrIV 16851 . G A 1468.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;DP=150;Dels=0.00;FS=230.495;HaplotypeScore=15.0284;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=30;MQRankSum=4.214;QD=9.79;ReadPosRankSum=4.674;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:47,103:150:54:1498,0,54 chrIV 16965 . C A 217.01 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=4;QD=2.36;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:27:250,27,0 chrIV 16977 . T C 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=4;MQRankSum=-1.732;QD=0.55;ReadPosRankSum=1.683;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,74:75:9:73,9,0 chrIV 17298 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=6.9006;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.40;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2134,213,0 chrIV 17496 . T A 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1472;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.701;QD=27.21;ReadPosRankSum=0.546;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:3053,298,0 chrIV 18195 . A C 3486.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.413;DP=280;Dels=0.00;FS=119.505;HaplotypeScore=80.5237;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=23;MQRankSum=1.761;QD=12.45;ReadPosRankSum=2.851;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:77,166:280:70:3486,70,0 chrIV 18200 . A G 3042.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;DP=279;Dels=0.00;FS=83.561;HaplotypeScore=103.6705;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=23;MQRankSum=1.006;QD=10.90;ReadPosRankSum=1.957;SB=-1.475e+03 GT:AD:DP:GQ:PL 0/1:85,193:279:99:3072,0,114 chrIV 18219 . A G 1916.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=263;Dels=0.00;FS=250.221;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=38.47;MQ0=20;MQRankSum=0.342;QD=7.29;ReadPosRankSum=1.331;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:141,117:263:99:1946,0,945 chrIV 18231 . T A 1683.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.195;DP=255;Dels=0.00;FS=239.461;HaplotypeScore=5.4435;MLEAC=1;MLEAF=0.500;MQ=38.57;MQ0=23;MQRankSum=-1.849;QD=6.60;ReadPosRankSum=-1.954;SB=-3.010e+02 GT:AD:DP:GQ:PL 0/1:134,121:255:99:1713,0,1580 chrIV 18264 . T A 1404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.970;DP=286;Dels=0.00;FS=361.569;HaplotypeScore=19.2487;MLEAC=1;MLEAF=0.500;MQ=40.86;MQ0=12;MQRankSum=-4.083;QD=4.91;ReadPosRankSum=-1.822;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:175,111:286:99:1434,0,2914 chrIV 18279 . A G 1079.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.568;DP=288;Dels=0.00;FS=334.440;HaplotypeScore=10.4738;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=7;MQRankSum=-6.045;QD=3.75;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,100:288:99:1109,0,3373 chrIV 18291 . G A 1344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.799;DP=292;Dels=0.00;FS=321.948;HaplotypeScore=21.9360;MLEAC=1;MLEAF=0.500;MQ=39.59;MQ0=8;MQRankSum=-5.311;QD=4.60;ReadPosRankSum=1.725;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,104:292:99:1374,0,3256 chrIV 18303 . C T 1805.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.496;DP=302;Dels=0.00;FS=383.190;HaplotypeScore=49.6136;MLEAC=1;MLEAF=0.500;MQ=38.41;MQ0=11;MQRankSum=-7.578;QD=5.98;ReadPosRankSum=-1.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,136:302:99:1835,0,2929 chrIV 18325 . T C 1881.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.352;DP=334;Dels=0.00;FS=254.083;HaplotypeScore=72.0802;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=14;MQRankSum=-8.348;QD=5.63;ReadPosRankSum=0.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,179:334:99:1911,0,2699 chrIV 18333 . A G 1387.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.071;DP=333;Dels=0.00;FS=276.297;HaplotypeScore=68.2415;MLEAC=1;MLEAF=0.500;MQ=36.29;MQ0=16;MQRankSum=-1.269;QD=4.17;ReadPosRankSum=-0.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,117:333:99:1417,0,3282 chrIV 18342 . A G 1135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.120;DP=336;Dels=0.00;FS=260.292;HaplotypeScore=22.8973;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=18;MQRankSum=-2.776;QD=3.38;ReadPosRankSum=1.759;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,104:336:99:1165,0,3696 chrIV 18345 . G A 1151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;DP=327;Dels=0.00;FS=259.381;HaplotypeScore=18.1679;MLEAC=1;MLEAF=0.500;MQ=36.78;MQ0=18;MQRankSum=-2.143;QD=3.52;ReadPosRankSum=2.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,98:327:99:1181,0,3663 chrIV 18351 . A G 950.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.568;DP=323;Dels=0.00;FS=225.995;HaplotypeScore=24.4227;MLEAC=1;MLEAF=0.500;MQ=36.19;MQ0=18;MQRankSum=-1.318;QD=2.94;ReadPosRankSum=2.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,90:323:99:980,0,3497 chrIV 18357 . A C 913.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=312;Dels=0.00;FS=220.098;HaplotypeScore=16.5906;MLEAC=1;MLEAF=0.500;MQ=35.44;MQ0=18;MQRankSum=-0.386;QD=2.93;ReadPosRankSum=1.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,84:312:99:943,0,3255 chrIV 18369 . T A 743.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DP=293;Dels=0.00;FS=201.669;HaplotypeScore=15.6095;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=18;MQRankSum=-1.632;QD=2.54;ReadPosRankSum=0.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,70:293:99:773,0,3320 chrIV 18376 . T C 507.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;DP=284;Dels=0.00;FS=177.799;HaplotypeScore=14.9302;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=18;MQRankSum=-1.055;QD=1.79;ReadPosRankSum=-0.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,59:284:99:537,0,3473 chrIV 18377 . T C 497.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.514;DP=282;Dels=0.00;FS=170.967;HaplotypeScore=16.3434;MLEAC=1;MLEAF=0.500;MQ=37.47;MQ0=18;MQRankSum=-1.635;QD=1.76;ReadPosRankSum=-0.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,59:282:99:527,0,3399 chrIV 18387 . T C 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.278;DP=264;Dels=0.00;FS=119.028;HaplotypeScore=6.0906;MLEAC=1;MLEAF=0.500;MQ=39.25;MQ0=18;MQRankSum=-2.753;QD=0.44;ReadPosRankSum=-2.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,42:264:99:145,0,3466 chrIV 18388 . C G 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.871;DP=266;Dels=0.00;FS=118.349;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=39.71;MQ0=18;MQRankSum=-2.956;QD=0.41;ReadPosRankSum=-2.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,42:266:99:139,0,3484 chrIV 18389 . C T 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.125;DP=269;Dels=0.00;FS=117.421;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=18;MQRankSum=-2.972;QD=0.38;ReadPosRankSum=-2.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,42:269:99:131,0,3467 chrIV 18396 . C T 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DP=266;Dels=0.00;FS=97.987;HaplotypeScore=17.5244;MLEAC=1;MLEAF=0.500;MQ=41.34;MQ0=16;MQRankSum=-3.050;QD=0.46;ReadPosRankSum=-3.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,33:266:99:152,0,3640 chrIV 18399 . G A 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DP=265;Dels=0.00;FS=91.298;HaplotypeScore=14.3150;MLEAC=1;MLEAF=0.500;MQ=42.10;MQ0=16;MQRankSum=-3.886;QD=0.23;ReadPosRankSum=-3.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,32:265:91:91,0,3812 chrIV 18516 . A G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.887;DP=169;Dels=0.00;FS=14.961;HaplotypeScore=33.2483;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=6;MQRankSum=-8.452;QD=0.11;ReadPosRankSum=0.397;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:127,42:169:49:49,0,2840 chrIV 18531 . A T 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.853;DP=160;Dels=0.00;FS=26.659;HaplotypeScore=150.0064;MLEAC=1;MLEAF=0.500;MQ=45.52;MQ0=4;MQRankSum=-8.658;QD=1.18;ReadPosRankSum=2.137;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:104,56:160:99:218,0,2287 chrIV 18540 . A G 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=171;Dels=0.00;FS=208.222;HaplotypeScore=203.8778;MLEAC=1;MLEAF=0.500;MQ=44.66;MQ0=2;MQRankSum=-3.694;QD=0.44;ReadPosRankSum=1.085;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,33:171:99:106,0,2417 chrIV 18571 . C G 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=160;Dels=0.00;FS=262.499;HaplotypeScore=203.4453;MLEAC=1;MLEAF=0.500;MQ=42.84;MQ0=0;MQRankSum=-4.597;QD=1.70;ReadPosRankSum=-0.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,48:160:99:302,0,1702 chrIV 18588 . G A 295.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DP=163;Dels=0.00;FS=69.886;HaplotypeScore=177.7023;MLEAC=1;MLEAF=0.500;MQ=44.23;MQ0=0;MQRankSum=-8.396;QD=1.81;ReadPosRankSum=2.179;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:88,75:163:99:325,0,1810 chrIV 18590 . T G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.146;DP=164;Dels=0.00;FS=252.673;HaplotypeScore=173.7981;MLEAC=1;MLEAF=0.500;MQ=44.34;MQ0=0;MQRankSum=-4.469;QD=0.81;ReadPosRankSum=2.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,47:164:99:163,0,2040 chrIV 18605 . G A 87.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;DP=155;Dels=0.00;FS=70.035;HaplotypeScore=138.0777;MLEAC=1;MLEAF=0.500;MQ=44.47;MQ0=0;MQRankSum=-8.864;QD=0.56;ReadPosRankSum=0.789;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:90,65:155:99:117,0,1828 chrIV 18624 . T G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DP=148;Dels=0.00;FS=192.469;HaplotypeScore=39.8003;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=7;MQRankSum=-6.575;QD=0.39;ReadPosRankSum=-0.846;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,43:148:88:88,0,1660 chrIV 18682 . A G 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;DP=97;Dels=0.00;FS=135.428;HaplotypeScore=4.0101;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=7;MQRankSum=-3.127;QD=0.46;ReadPosRankSum=3.192;SB=-3.897e+01 GT:AD:DP:GQ:PL 0/1:58,39:97:75:75,0,951 chrIV 18683 . G C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DP=98;Dels=0.00;FS=135.428;HaplotypeScore=6.4613;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=7;MQRankSum=-1.808;QD=0.48;ReadPosRankSum=3.363;SB=-3.093e+01 GT:AD:DP:GQ:PL 0/1:58,39:98:77:77,0,928 chrIV 18693 . T C 567.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;DP=100;Dels=0.00;FS=134.967;HaplotypeScore=5.6493;MLEAC=1;MLEAF=0.500;MQ=33.19;MQ0=7;MQRankSum=-1.768;QD=5.67;ReadPosRankSum=-5.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,46:100:99:597,0,404 chrIV 18696 . T G 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.964;DP=98;Dels=0.00;FS=131.476;HaplotypeScore=7.0322;MLEAC=1;MLEAF=0.500;MQ=33.80;MQ0=7;MQRankSum=-1.302;QD=5.13;ReadPosRankSum=-6.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,41:98:99:533,0,456 chrIV 18916 . T G 2342 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.90;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2375,243,0 chrIV 19104 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=7.866;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.833;QD=26.92;ReadPosRankSum=1.699;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2886,292,0 chrIV 20624 . G A 635 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:66:668,66,0 chrIV 21510 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.032;QD=23.85;ReadPosRankSum=1.668;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3911,409,0 chrIV 23647 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.895;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.156;QD=25.94;ReadPosRankSum=2.400;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2601,267,0 chrIV 26950 . C A 2173 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.50;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2206,222,0 chrIV 27235 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1959,198,0 chrIV 27307 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2383,234,0 chrIV 27879 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3093,313,0 chrIV 28210 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.990;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.469;QD=23.89;ReadPosRankSum=2.345;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3965,400,0 chrIV 28565 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=3.882;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.680;QD=25.04;ReadPosRankSum=1.706;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3355,340,0 chrIV 30404 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.13;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3074,301,0 chrIV 30826 . A C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=117;Dels=0.00;FS=5.918;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.371;QD=23.35;ReadPosRankSum=2.940;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2765,285,0 chrIV 31224 . G T 3014 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3047,301,0 chrIV 33211 . A G 2432 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2465,255,0 chrIV 33904 . G C 2230 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2263,234,0 chrIV 34063 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1095,111,0 chrIV 37123 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.8862;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.49;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4885,493,0 chrIV 38160 . A T 5506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.382;QD=25.26;ReadPosRankSum=1.700;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5506,550,0 chrIV 38200 . C T 4881.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.29;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4881,478,0 chrIV 39021 . G T 2720 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5621;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.47;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2753,271,0 chrIV 40439 . T C 4813.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.8554;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.94;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4813,490,0 chrIV 40965 . G C 2387 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2420,246,0 chrIV 41772 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.50;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3657,367,0 chrIV 42278 . C T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.72;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4707,478,0 chrIV 42343 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.88;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3782,396,0 chrIV 42469 . G T 2873 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.85;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2906,286,0 chrIV 42970 . G A 6207.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.19;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:6207,610,0 chrIV 45363 . T C 7068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=301;Dels=0.00;FS=3.979;HaplotypeScore=23.0561;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.912;QD=23.48;ReadPosRankSum=1.721;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:1,299:301:99:7068,733,0 chrIV 45465 . C T 6084.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=1;QD=23.77;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,251:256:99:6084,619,0 chrIV 46068 . G C 981 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.82;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1014,102,0 chrIV 46090 . C G 755 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.35;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,29:31:81:788,81,0 chrIV 46115 . G A 771 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.36;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:804,87,0 chrIV 46164 . T A 1486 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.36;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1519,159,0 chrIV 46179 . T G 1672 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.96;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1705,174,0 chrIV 46608 . A T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.75;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3718,367,0 chrIV 46818 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6512;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.08;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4311,445,0 chrIV 47365 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=153;Dels=0.00;FS=2.583;HaplotypeScore=16.6151;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.204;QD=21.87;ReadPosRankSum=2.954;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3346,348,0 chrIV 47467 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4041,406,0 chrIV 48046 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=2.797;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.535;QD=23.78;ReadPosRankSum=2.412;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3100,324,0 chrIV 48241 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1306;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.514;QD=24.79;ReadPosRankSum=1.536;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3966,400,0 chrIV 48267 . G T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.95;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3944,382,0 chrIV 48349 . G A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.06;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4655,466,0 chrIV 48393 . C T 5061.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.78;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5061,523,0 chrIV 48617 . A C 6763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=263;Dels=0.00;FS=4.418;HaplotypeScore=13.7419;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.705;QD=25.71;ReadPosRankSum=1.705;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,259:263:99:6763,691,0 chrIV 49108 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.64;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2955,295,0 chrIV 49229 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4231;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.68;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2461,246,0 chrIV 50971 . A G 2512 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.37;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2545,258,0 chrIV 52093 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.6613;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4363,454,0 chrIV 52141 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.40;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3557,372,0 chrIV 52556 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3381,343,0 chrIV 53011 . A G 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=212;Dels=0.00;FS=8.108;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.632;QD=24.13;ReadPosRankSum=3.394;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:4,206:212:99:5116,520,0 chrIV 53077 . T C 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=217;Dels=0.00;FS=10.165;HaplotypeScore=21.1252;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.051;QD=24.26;ReadPosRankSum=2.968;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:5264,550,0 chrIV 53471 . G A 5288.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3921;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.84;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5288,526,0 chrIV 53890 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7776;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.69;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2782,282,0 chrIV 54838 . T A 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.522;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.487;QD=20.13;ReadPosRankSum=1.709;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3113,316,0 chrIV 59586 . T C 10349.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=398;Dels=0.00;FS=5.188;HaplotypeScore=19.3884;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.296;QD=26.00;ReadPosRankSum=3.392;SB=-4.267e+03 GT:AD:DP:GQ:PL 1/1:4,391:398:99:10349,1058,0 chrIV 61039 . T C 5427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=231;Dels=0.00;FS=2.557;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.109;QD=23.49;ReadPosRankSum=2.821;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:5427,577,0 chrIV 62021 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.11;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4494,451,0 chrIV 62075 . A G 5532.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.92;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5532,562,0 chrIV 62157 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=211;Dels=0.00;FS=2.948;HaplotypeScore=25.3594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.568;QD=21.23;ReadPosRankSum=2.391;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4480,463,0 chrIV 62324 . G C 6009.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.7707;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.13;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:6009,610,0 chrIV 62726 . T C 5146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=224;Dels=0.00;FS=6.079;HaplotypeScore=19.2358;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.525;QD=22.97;ReadPosRankSum=2.960;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5146,532,0 chrIV 62804 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=231;Dels=0.00;FS=2.881;HaplotypeScore=14.4923;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.701;QD=16.80;ReadPosRankSum=2.428;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:2,225:231:99:3880,403,0 chrIV 62811 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.046;DP=234;Dels=0.00;FS=13.919;HaplotypeScore=15.9972;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.108;QD=16.91;ReadPosRankSum=4.083;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:6,226:233:99:3958,417,0 chrIV 63216 . A G 4997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=198;Dels=0.00;FS=11.106;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.812;QD=25.24;ReadPosRankSum=2.904;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4997,502,0 chrIV 63300 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=25.47;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4457,442,0 chrIV 63504 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=25.09;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4793,478,0 chrIV 63528 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.66;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4029,397,0 chrIV 63541 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.77;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3519,355,0 chrIV 63545 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.05;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3429,340,0 chrIV 63653 . C T 4650.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.1640;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.73;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4650,481,0 chrIV 63839 . G C 5155.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.67;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5155,523,0 chrIV 63900 . T A 5564.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2277;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=27.14;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5564,550,0 chrIV 63927 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.77;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,223:230:99:5237,556,0 chrIV 64020 . A G 5182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=212;Dels=0.00;FS=6.211;HaplotypeScore=20.4915;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.222;QD=24.44;ReadPosRankSum=2.379;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:5182,529,0 chrIV 64139 . T A 4973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=200;Dels=0.00;FS=14.184;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.834;QD=24.87;ReadPosRankSum=2.794;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4973,499,0 chrIV 64209 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3878;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.36;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4461,460,0 chrIV 64510 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.58;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3130,319,0 chrIV 64534 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.52;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3122,316,0 chrIV 64832 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2937,289,0 chrIV 64935 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.87;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2110,216,0 chrIV 64950 . A G 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.583;QD=22.95;ReadPosRankSum=1.695;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2167,222,0 chrIV 65137 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=26.55;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3372,343,0 chrIV 65186 . T G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=2.809;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.259;QD=24.59;ReadPosRankSum=2.334;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3180,333,0 chrIV 65233 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.85;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3458,343,0 chrIV 65250 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=2.787;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.994;QD=22.73;ReadPosRankSum=2.413;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3101,318,0 chrIV 65350 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6969;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.921;QD=22.64;ReadPosRankSum=2.013;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3112,321,0 chrIV 65400 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.94;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3224,319,0 chrIV 65456 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.32;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2641,261,0 chrIV 65891 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=26.92;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2267,225,0 chrIV 66159 . A T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.81;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3524,358,0 chrIV 66166 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.72;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3431,346,0 chrIV 66230 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.4525;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.487;QD=23.71;ReadPosRankSum=1.713;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4244,436,0 chrIV 66347 . T A 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.966;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.027;QD=25.35;ReadPosRankSum=1.691;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4233,436,0 chrIV 66478 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.159;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.128;QD=24.27;ReadPosRankSum=1.686;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3640,376,0 chrIV 66552 . G T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5311,535,0 chrIV 66957 . T C 7950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=320;Dels=0.00;FS=3.016;HaplotypeScore=18.6714;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.031;QD=24.84;ReadPosRankSum=2.388;SB=-4.180e+03 GT:AD:DP:GQ:PL 1/1:2,318:320:99:7950,829,0 chrIV 67254 . G A 10174.01 filter AC=2;AF=1.00;AN=2;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=26.5574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.94;SB=-5.887e+03 GT:AD:DP:GQ:PL 1/1:0,424:425:99:10174,1013,0 chrIV 67529 . A C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.170;QD=20.76;ReadPosRankSum=1.698;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2151,216,0 chrIV 67659 . T C 800 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.683;QD=24.24;ReadPosRankSum=1.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:87:833,87,0 chrIV 67713 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.239;QD=24.53;ReadPosRankSum=2.364;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1431,150,0 chrIV 67718 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=24.40;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1497,150,0 chrIV 67805 . A C 1211 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=25.77;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1244,126,0 chrIV 67832 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=22.92;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1133,114,0 chrIV 67845 . G C 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.821;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=51.8108;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=1.672;QD=20.81;ReadPosRankSum=1.672;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1219,126,0 chrIV 68004 . A T 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=6.173;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.090;QD=21.50;ReadPosRankSum=1.672;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2527,250,0 chrIV 68082 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.75;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2656,259,0 chrIV 68190 . C A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.7768;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.52;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3825,394,0 chrIV 68677 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.521;QD=25.15;ReadPosRankSum=1.662;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3748,388,0 chrIV 68860 . C A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.85;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3619,355,0 chrIV 68911 . A C 3544.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.78;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3544,367,0 chrIV 69136 . C T 6038.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=17.4374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6038,598,0 chrIV 69269 . C G 5376.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.48;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5376,559,0 chrIV 69621 . G T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.77;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3319,340,0 chrIV 69675 . T A 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=136;Dels=0.00;FS=2.966;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.058;QD=24.40;ReadPosRankSum=2.305;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3319,337,0 chrIV 69990 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=153;Dels=0.00;FS=6.050;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.609;QD=24.58;ReadPosRankSum=2.941;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3760,385,0 chrIV 70227 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=173;Dels=0.00;FS=10.642;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.424;QD=21.54;ReadPosRankSum=2.925;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3727,391,0 chrIV 70254 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.52;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3986,403,0 chrIV 70457 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=105;Dels=0.00;FS=2.557;HaplotypeScore=8.5434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.097;QD=21.79;ReadPosRankSum=2.913;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:3,101:105:99:2321,234,0 chrIV 70481 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.38;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2000,198,0 chrIV 70552 . C A 2491 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5613;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.22;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2524,249,0 chrIV 70718 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.15;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2548,252,0 chrIV 70900 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9480;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.35;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3425,337,0 chrIV 71168 . T G 4359.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.1842;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.95;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4359,445,0 chrIV 71207 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.38;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4680,481,0 chrIV 71264 . A G 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=190;Dels=0.00;FS=3.032;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.516;QD=25.23;ReadPosRankSum=2.345;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4794,484,0 chrIV 71523 . T G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=150;Dels=0.00;FS=3.720;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.685;QD=22.34;ReadPosRankSum=1.661;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,145:150:99:3351,346,0 chrIV 71645 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1360;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3292,339,0 chrIV 72290 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.957;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.018;QD=25.90;ReadPosRankSum=1.696;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2571,261,0 chrIV 72338 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.92;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2674,276,0 chrIV 72764 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=27.52;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3881,397,0 chrIV 73193 . C A 3048 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3081,318,0 chrIV 73466 . G T 2646 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2679,270,0 chrIV 73760 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.18;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3456,340,0 chrIV 74634 . G A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.23;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5071,496,0 chrIV 74663 . T G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.080;QD=22.40;ReadPosRankSum=1.712;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3830,397,0 chrIV 74701 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=18.24;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2897,297,0 chrIV 74712 . C T 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;MQRankSum=-0.733;QD=16.08;ReadPosRankSum=0.414;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:2687,279,0 chrIV 74731 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=272.5553;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=17.01;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2652,265,0 chrIV 75082 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.6784;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.50;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4206,427,0 chrIV 75208 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.610;DP=154;Dels=0.00;FS=4.060;HaplotypeScore=11.8689;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.102;QD=23.51;ReadPosRankSum=3.792;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:5,149:154:99:3620,370,0 chrIV 75655 . G A 6303.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.6590;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.94;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6303,628,0 chrIV 75706 . G C 5977.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.55;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5977,607,0 chrIV 75728 . T A 6606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=280;Dels=0.00;FS=8.866;HaplotypeScore=12.7988;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.395;QD=23.59;ReadPosRankSum=3.430;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:4,276:280:99:6606,652,0 chrIV 76025 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.780;DP=186;Dels=0.00;FS=7.808;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.147;QD=23.05;ReadPosRankSum=3.797;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:5,181:186:99:4288,445,0 chrIV 76252 . T A 4818.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.8165;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.36;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4818,502,0 chrIV 76567 . G A 2769 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.15;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2802,277,0 chrIV 76568 . G A 2769 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.33;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2802,277,0 chrIV 76572 . A G 2802 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.72;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2835,294,0 chrIV 76795 . G C 2559 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.85;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2592,273,0 chrIV 76974 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.394;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.464;QD=25.61;ReadPosRankSum=1.683;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3662,370,0 chrIV 77053 . T G 3136 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3169,322,0 chrIV 77245 . T G 3621.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1034;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=26.43;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3621,379,0 chrIV 77295 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7890;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.18;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4407,451,0 chrIV 77418 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.6656;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.89;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4348,454,0 chrIV 77646 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.5863;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.46;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4227,421,0 chrIV 77910 . A G 2441 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2474,255,0 chrIV 77997 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=9.345;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.248;QD=21.78;ReadPosRankSum=2.375;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2908,303,0 chrIV 78181 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.90;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2088,213,0 chrIV 78264 . A C 3105 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3138,319,0 chrIV 78578 . G A 5222.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.70;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5222,538,0 chrIV 78587 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.47;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5218,505,0 chrIV 78590 . A G 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=245;Dels=0.00;FS=6.518;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-1.338;QD=20.48;ReadPosRankSum=2.338;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:5018,514,0 chrIV 78644 . T A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.45;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4474,451,0 chrIV 78875 . T A 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=4.483;HaplotypeScore=9.7998;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.427;QD=23.75;ReadPosRankSum=1.708;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3467,358,0 chrIV 78945 . C G 2335 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2368,246,0 chrIV 79321 . G A 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.9880;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.337;QD=17.66;ReadPosRankSum=1.347;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1340,117,0 chrIV 79322 . G A 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.451;QD=18.08;ReadPosRankSum=1.210;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,73:78:99:1443,116,0 chrIV 79387 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.73;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2902,286,0 chrIV 79389 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.95;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2840,288,0 chrIV 79474 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.42;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3661,364,0 chrIV 79600 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.17;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3985,426,0 chrIV 79621 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.20;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:4107,400,0 chrIV 79687 . T A 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=3.248;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.830;QD=22.24;ReadPosRankSum=1.630;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3759,385,0 chrIV 79744 . G T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.52;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3385,346,0 chrIV 79746 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.20;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3333,340,0 chrIV 79782 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.577;QD=17.32;ReadPosRankSum=1.710;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2752,282,0 chrIV 79801 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.096;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=1.469;QD=16.52;ReadPosRankSum=0.899;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2659,276,0 chrIV 79852 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=167;Dels=0.00;FS=10.101;HaplotypeScore=8.2438;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.224;QD=23.13;ReadPosRankSum=2.897;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3862,388,0 chrIV 79893 . T A 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.754;QD=24.63;ReadPosRankSum=1.693;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4359,433,0 chrIV 79909 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7859;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.28;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4055,412,0 chrIV 80056 . C T 6412.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=25.65;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6412,646,0 chrIV 80089 . G A 6220.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.88;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6220,649,0 chrIV 80153 . C T 6650.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.0988;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=25.78;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:0,253:258:99:6650,688,0 chrIV 80250 . C T 5838.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.2878;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=22.72;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5838,604,0 chrIV 80251 . C A 5923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.8662;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.068;QD=23.14;ReadPosRankSum=1.651;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:5923,601,0 chrIV 80312 . G T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.79;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3973,394,0 chrIV 80374 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=5.272;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=1.063;QD=22.37;ReadPosRankSum=1.715;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4518,463,0 chrIV 80379 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=21.63;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4563,460,0 chrIV 80414 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=17.03;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3115,313,0 chrIV 80430 . G T 2226 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=14.00;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2259,237,0 chrIV 80440 . T A 2049 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.33;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2082,210,0 chrIV 80445 . A T 1762 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.341;QD=12.86;ReadPosRankSum=1.707;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1795,177,0 chrIV 80448 . C T 1609 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.57;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1642,162,0 chrIV 80454 . G C 1581 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=12.96;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1614,165,0 chrIV 80467 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=13.21;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1578,156,0 chrIV 80483 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=15.19;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1674,171,0 chrIV 80506 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-0.458;QD=20.22;ReadPosRankSum=1.699;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2176,219,0 chrIV 80612 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=26.08;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3163,325,0 chrIV 80723 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=2.654;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.946;QD=25.15;ReadPosRankSum=2.336;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3848,385,0 chrIV 80742 . C A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=26.06;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4065,406,0 chrIV 80784 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.09;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2464,246,0 chrIV 80820 . C A 2184 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=17.76;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2217,228,0 chrIV 80843 . A G 2018 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=16.02;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2051,210,0 chrIV 80856 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=16.00;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2049,207,0 chrIV 80858 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=16.97;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2171,213,0 chrIV 80878 . T A 2772 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=19.94;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2805,268,0 chrIV 81145 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.367;QD=23.64;ReadPosRankSum=1.702;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2728,282,0 chrIV 81257 . T G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.3427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.599;QD=25.76;ReadPosRankSum=1.645;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4096,427,0 chrIV 81585 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.07;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4302,433,0 chrIV 81776 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.241;HaplotypeScore=4.4041;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.180;QD=25.32;ReadPosRankSum=1.665;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3925,403,0 chrIV 81855 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4080;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.87;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3819,391,0 chrIV 81868 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.479;DP=167;Dels=0.00;FS=22.553;HaplotypeScore=8.9753;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.102;QD=21.51;ReadPosRankSum=3.537;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:5,160:167:99:3592,361,0 chrIV 81963 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3834,382,0 chrIV 82290 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.68;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2279,228,0 chrIV 82312 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.10;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2158,222,0 chrIV 82454 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=11.4548;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.446;QD=19.51;ReadPosRankSum=1.696;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1945,201,0 chrIV 82570 . A T 2343 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.33;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2376,237,0 chrIV 82754 . A T 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=4.512;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.586;QD=26.37;ReadPosRankSum=1.705;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3428,349,0 chrIV 82818 . A G 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=4.388;HaplotypeScore=14.7564;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.554;QD=26.06;ReadPosRankSum=1.714;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:5108,517,0 chrIV 82949 . T C 5764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=219;Dels=0.00;FS=2.920;HaplotypeScore=11.6937;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=2.057;QD=26.32;ReadPosRankSum=2.416;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5764,595,0 chrIV 83019 . T C 5413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=229;Dels=0.00;FS=15.004;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.096;QD=23.64;ReadPosRankSum=3.353;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:4,224:229:99:5413,559,0 chrIV 83045 . C A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.23;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4971,499,0 chrIV 83082 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5080;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.080;QD=23.39;ReadPosRankSum=1.681;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4772,490,0 chrIV 83178 . G A 4678.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=24.11;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4678,469,0 chrIV 83205 . A T 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5060;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.022;QD=18.49;ReadPosRankSum=2.062;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3194,386,0 chrIV 83206 . C A 3030 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.82;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3063,374,0 chrIV 83241 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.118;QD=23.00;ReadPosRankSum=1.634;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4163,438,0 chrIV 83327 . C T 4875.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.39;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4875,490,0 chrIV 83419 . T G 4020.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=169.2526;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.58;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4020,418,0 chrIV 83420 . C A 4010.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=169.2526;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.66;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4010,409,0 chrIV 83424 . G C 2294 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=13.42;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2327,287,0 chrIV 83425 . A G 2410 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=14.01;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2443,296,0 chrIV 83514 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=164;Dels=0.00;FS=7.684;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.127;QD=23.59;ReadPosRankSum=2.390;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3868,400,0 chrIV 83684 . A T 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=146;Dels=0.00;FS=6.071;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.545;QD=24.59;ReadPosRankSum=2.952;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3590,367,0 chrIV 84004 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4269,415,0 chrIV 84173 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=168;Dels=0.00;FS=8.156;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.119;QD=24.71;ReadPosRankSum=2.420;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4151,436,0 chrIV 84632 . G T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.0046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3721,367,0 chrIV 84947 . G T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4213,418,0 chrIV 85280 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.11;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4099,400,0 chrIV 85346 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.25;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3832,376,0 chrIV 85442 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.219;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=24.56;ReadPosRankSum=1.709;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3660,376,0 chrIV 85809 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.080;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.072;QD=25.44;ReadPosRankSum=1.650;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3239,322,0 chrIV 85844 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.56;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1894,186,0 chrIV 85895 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.81;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1734,171,0 chrIV 86111 . C A 794 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:84:827,84,0 chrIV 86164 . T C 699 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.053;QD=21.18;ReadPosRankSum=1.628;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:72:732,72,0 chrIV 86165 . T G 647 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.61;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:33:69:680,69,0 chrIV 86196 . G A 670 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.71;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:703,69,0 chrIV 86292 . A C 1832 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1865,189,0 chrIV 86474 . C A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3746,370,0 chrIV 86774 . C T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.09;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4893,496,0 chrIV 87227 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2576;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.32;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3862,379,0 chrIV 87312 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4455,439,0 chrIV 87483 . G A 6151.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=28.09;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:6151,610,0 chrIV 88010 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=2.726;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.427;QD=22.05;ReadPosRankSum=2.323;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1753,174,0 chrIV 88023 . A T 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.330;DP=65;Dels=0.00;FS=13.649;HaplotypeScore=12.2090;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.685;QD=0.95;ReadPosRankSum=4.996;SB=-6.745e+02 GT:AD:DP:GQ:PL 1/1:12,53:65:12:94,12,0 chrIV 88024 . T A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DP=64;Dels=0.02;FS=20.048;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=1.966;QD=0.73;ReadPosRankSum=4.655;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:10,53:63:34:77,0,34 chrIV 88301 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=121;Dels=0.00;FS=2.692;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.010;QD=23.69;ReadPosRankSum=2.328;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2900,297,0 chrIV 88325 . T A 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.944;QD=26.14;ReadPosRankSum=1.660;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3816,382,0 chrIV 88422 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.81;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4642,454,0 chrIV 88441 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.41;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4760,472,0 chrIV 88505 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.9002;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.862;QD=24.34;ReadPosRankSum=1.715;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4868,505,0 chrIV 88760 . G A 5190.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.48;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5190,514,0 chrIV 88875 . G C 4185.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.91;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4185,430,0 chrIV 89066 . A T 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.604;QD=26.71;ReadPosRankSum=1.705;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3446,340,0 chrIV 89384 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.60;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5773,574,0 chrIV 89537 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=3.016;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.142;QD=20.36;ReadPosRankSum=2.410;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3807,385,0 chrIV 89546 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=2.975;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.175;QD=20.82;ReadPosRankSum=2.346;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3955,412,0 chrIV 89754 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=4.603;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.840;QD=18.40;ReadPosRankSum=1.561;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1910,198,0 chrIV 89816 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=26.00;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2061,201,0 chrIV 90061 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2018,198,0 chrIV 90257 . A C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3303,339,0 chrIV 90424 . G A 4988.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.98;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4988,490,0 chrIV 90554 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.64;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3844,385,0 chrIV 90638 . A C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=21.08;ReadPosRankSum=1.636;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3089,321,0 chrIV 90975 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.58;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3658,352,0 chrIV 91318 . T C 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.047;QD=21.23;ReadPosRankSum=1.692;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1859,192,0 chrIV 91325 . G T 1859 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.13;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1892,189,0 chrIV 91537 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=3.653;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.669;QD=23.55;ReadPosRankSum=1.700;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2600,270,0 chrIV 91642 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3376,334,0 chrIV 91837 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3082,316,0 chrIV 91977 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3529,343,0 chrIV 92275 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.259;QD=25.87;ReadPosRankSum=1.692;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2284,225,0 chrIV 92293 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=25.36;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2290,237,0 chrIV 92350 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.86;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1359,135,0 chrIV 92364 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.75;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1434,147,0 chrIV 94008 . T A 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.056;DP=100;Dels=0.00;FS=2.720;HaplotypeScore=7.2925;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.366;QD=21.97;ReadPosRankSum=2.327;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2230,231,0 chrIV 94137 . T A 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.600;QD=23.68;ReadPosRankSum=1.688;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3742,402,0 chrIV 94379 . A G 5459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=221;Dels=0.00;FS=2.893;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.754;QD=24.70;ReadPosRankSum=2.405;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:5459,550,0 chrIV 94417 . C T 6239.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6239,616,0 chrIV 94538 . T G 4942.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.4664;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.76;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4942,508,0 chrIV 95033 . C G 5023.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5023,526,0 chrIV 95432 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.0416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.70;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4403,460,0 chrIV 95525 . T C 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=3.029;HaplotypeScore=14.1256;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.415;QD=25.31;ReadPosRankSum=2.424;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4834,496,0 chrIV 95805 . C T 58.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.863;DP=71;Dels=0.00;FS=1.777;HaplotypeScore=58.2715;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=1;MQRankSum=2.289;QD=0.82;ReadPosRankSum=-0.096;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:7,63:71:12:91,12,0 chrIV 95862 . T A 1220 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=61.59;MQ0=0;QD=19.06;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1253,126,0 chrIV 96121 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.75;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2695,282,0 chrIV 96124 . T A 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.474;QD=23.68;ReadPosRankSum=2.940;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2804,277,0 chrIV 96178 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.514;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.201;QD=22.72;ReadPosRankSum=1.682;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3169,327,0 chrIV 96217 . T C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.88;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4428,454,0 chrIV 96257 . T A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.39;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4367,421,0 chrIV 96268 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.45;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4033,397,0 chrIV 96471 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.76;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3788,379,0 chrIV 96643 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.00;FS=8.779;HaplotypeScore=3.3092;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.632;QD=21.73;ReadPosRankSum=2.398;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3205,331,0 chrIV 96663 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.81;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3398,331,0 chrIV 96776 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=13.9052;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.335;QD=22.28;ReadPosRankSum=1.710;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3542,364,0 chrIV 96799 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.219;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.732;QD=23.19;ReadPosRankSum=1.686;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3502,366,0 chrIV 97156 . A T 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.057;QD=25.38;ReadPosRankSum=1.667;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4035,412,0 chrIV 97262 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=25.35;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3853,385,0 chrIV 97292 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=25.87;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4087,409,0 chrIV 97315 . C G 3663.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.63;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3663,381,0 chrIV 97330 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.64;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3770,376,0 chrIV 97444 . T C 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8709;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.282;QD=25.19;ReadPosRankSum=1.693;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4458,460,0 chrIV 97521 . C A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.5364;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.58;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4719,478,0 chrIV 97639 . G T 5370.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.2310;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.97;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5370,538,0 chrIV 97828 . T G 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=4.239;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.146;QD=24.89;ReadPosRankSum=1.665;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:5226,535,0 chrIV 97927 . A C 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.069;QD=23.98;ReadPosRankSum=1.715;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4843,508,0 chrIV 98110 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.62;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2560,253,0 chrIV 98297 . T A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3644;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=26.20;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3747,370,0 chrIV 98322 . C A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.18;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3525,349,0 chrIV 98345 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.85;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3360,346,0 chrIV 98507 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=27.33;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3580,364,0 chrIV 98744 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=197;Dels=0.00;FS=10.046;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.986;QD=23.95;ReadPosRankSum=2.412;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4718,502,0 chrIV 98807 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.31;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4480,480,0 chrIV 99245 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.39;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3342,337,0 chrIV 99543 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.6537;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.04;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2221,225,0 chrIV 99689 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=7.360;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.645;QD=25.01;ReadPosRankSum=2.372;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3976,406,0 chrIV 99854 . G C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.25;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3783,391,0 chrIV 99929 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.691;QD=23.19;ReadPosRankSum=1.692;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4035,415,0 chrIV 100715 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.41;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3490,358,0 chrIV 100723 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.51;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3852,379,0 chrIV 101326 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.335;QD=25.87;ReadPosRankSum=1.704;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3215,328,0 chrIV 101500 . C T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.99;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3848,385,0 chrIV 101608 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=26.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2831,282,0 chrIV 101644 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=24.61;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3036,304,0 chrIV 101674 . C T 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6421;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.066;QD=16.56;ReadPosRankSum=2.055;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2203,252,0 chrIV 101676 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=7.5149;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.340;QD=16.22;ReadPosRankSum=2.302;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2206,252,0 chrIV 101707 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.33;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3022,312,0 chrIV 101871 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=26.44;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4177,421,0 chrIV 101893 . T C 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.065;QD=26.58;ReadPosRankSum=1.667;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4253,433,0 chrIV 102008 . G A 5215.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5215,538,0 chrIV 102115 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.92;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3707,367,0 chrIV 102412 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2756,276,0 chrIV 102509 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.32;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4070,406,0 chrIV 102582 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.93;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3855,382,0 chrIV 102617 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3493,346,0 chrIV 102705 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.16;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4605,469,0 chrIV 102739 . G T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.2515;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.80;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4564,457,0 chrIV 102985 . A G 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=2.954;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.514;QD=24.41;ReadPosRankSum=2.379;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5127,538,0 chrIV 103171 . T C 4195.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.57;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4195,430,0 chrIV 103356 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=2.930;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.444;QD=25.15;ReadPosRankSum=2.409;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4527,457,0 chrIV 103400 . A G 220.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=1.76;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,19:125:27:253,27,0 chrIV 103421 . T G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=0;MQRankSum=-1.086;QD=16.68;ReadPosRankSum=1.673;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2001,207,0 chrIV 103440 . G C 1948 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=15.34;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1981,204,0 chrIV 103444 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=15.71;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1997,198,0 chrIV 103456 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=16.85;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2544,258,0 chrIV 103509 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=4.140;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.358;QD=20.55;ReadPosRankSum=1.674;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3678,382,0 chrIV 103532 . G C 3549.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=158.7625;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.61;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3549,375,0 chrIV 103632 . C G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=25.57;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3401,346,0 chrIV 103784 . A T 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=158;Dels=0.00;FS=5.969;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.955;QD=24.08;ReadPosRankSum=2.790;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3804,382,0 chrIV 103829 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3877,385,0 chrIV 104093 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.496;QD=21.34;ReadPosRankSum=1.688;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3371,351,0 chrIV 104599 . T A 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.193;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.590;QD=25.66;ReadPosRankSum=1.708;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3746,373,0 chrIV 104780 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5772;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.91;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4010,406,0 chrIV 104854 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.37;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4136,418,0 chrIV 104877 . G T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=26.49;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3761,373,0 chrIV 104965 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.55;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4098,427,0 chrIV 105075 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.648;DP=154;Dels=0.00;FS=12.014;HaplotypeScore=11.9142;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.052;QD=24.22;ReadPosRankSum=3.689;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:5,148:154:99:3730,388,0 chrIV 105197 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.346;QD=22.79;ReadPosRankSum=1.643;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3556,370,0 chrIV 105244 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.17;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3814,382,0 chrIV 105348 . C G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.52;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3558,370,0 chrIV 105373 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.98;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4221,415,0 chrIV 105898 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.14;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5138,526,0 chrIV 105908 . T A 5335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=230;Dels=0.00;FS=9.048;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.201;QD=23.20;ReadPosRankSum=3.423;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:5335,544,0 chrIV 106057 . C T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.71;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4694,466,0 chrIV 106143 . C A 5472.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=24.99;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5472,541,0 chrIV 106297 . A C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.00;FS=6.980;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=-1.451;QD=21.34;ReadPosRankSum=2.423;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3990,409,0 chrIV 106306 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.458;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-0.289;QD=19.18;ReadPosRankSum=1.715;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3913,397,0 chrIV 106320 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=2.964;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=-0.754;QD=16.88;ReadPosRankSum=2.344;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:3545,372,0 chrIV 106337 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=216;Dels=0.00;FS=5.800;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.409;QD=17.00;ReadPosRankSum=2.912;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:3672,382,0 chrIV 106371 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.070;DP=215;Dels=0.00;FS=3.932;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.835;QD=18.95;ReadPosRankSum=2.999;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:6,209:215:99:4074,421,0 chrIV 106763 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.3554;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.54;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3583,355,0 chrIV 106892 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.2357;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.67;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3307,348,0 chrIV 107197 . G T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.97;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4869,499,0 chrIV 107930 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.5814;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.95;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4983,508,0 chrIV 107994 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.2975;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5008,508,0 chrIV 108056 . T C 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.295;QD=24.67;ReadPosRankSum=1.677;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4663,472,0 chrIV 108185 . G C 4706.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.90;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4706,490,0 chrIV 108281 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.95;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2763,277,0 chrIV 108510 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.89;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3442,340,0 chrIV 108611 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4108,409,0 chrIV 108791 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.061;HaplotypeScore=11.4472;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.443;QD=25.63;ReadPosRankSum=1.672;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4408,445,0 chrIV 108917 . G A 4197.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4197,418,0 chrIV 109279 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.95;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2856,286,0 chrIV 109331 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.98;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2706,265,0 chrIV 109355 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.01;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3058,307,0 chrIV 109468 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.63;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4634,463,0 chrIV 109828 . C A 6432.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.57;SB=-4.040e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6432,631,0 chrIV 109836 . A G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=274;Dels=0.00;FS=3.091;HaplotypeScore=7.8709;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.831;QD=21.50;ReadPosRankSum=1.656;SB=-3.796e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:5892,613,0 chrIV 110285 . C T 5293.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.4194;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.73;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5293,526,0 chrIV 110696 . T C 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=205;Dels=0.00;FS=9.227;HaplotypeScore=10.2792;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.299;QD=21.49;ReadPosRankSum=2.766;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:3,199:205:99:4406,448,0 chrIV 111205 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1968,201,0 chrIV 111349 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2476,252,0 chrIV 111716 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.81;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3975,391,0 chrIV 112122 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.02;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4324,430,0 chrIV 112233 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.72;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4045,424,0 chrIV 112236 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.30;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4217,412,0 chrIV 112284 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=225;Dels=0.00;FS=5.492;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.299;QD=24.18;ReadPosRankSum=2.951;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:5441,559,0 chrIV 112308 . C T 6586.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=8.0279;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.23;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6586,649,0 chrIV 112474 . G A 5819.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.56;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5819,595,0 chrIV 112515 . C T 5693.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.53;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5693,562,0 chrIV 112560 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=190;Dels=0.00;FS=11.430;HaplotypeScore=22.8670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.584;QD=23.72;ReadPosRankSum=3.724;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:5,185:190:99:4507,469,0 chrIV 112809 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.841;QD=25.19;ReadPosRankSum=1.712;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4308,439,0 chrIV 112969 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3528,364,0 chrIV 113295 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=108;Dels=0.00;FS=7.696;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.892;QD=22.44;ReadPosRankSum=2.264;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2456,255,0 chrIV 113442 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.4506;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.803;QD=24.71;ReadPosRankSum=1.676;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3072,310,0 chrIV 113458 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.17;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2658,262,0 chrIV 113472 . A T 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.600;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.028;QD=17.91;ReadPosRankSum=1.537;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2254,222,0 chrIV 113491 . A C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=4.876;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.550;QD=17.35;ReadPosRankSum=1.705;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2254,231,0 chrIV 113547 . G A 2236 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.69;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2269,246,0 chrIV 113548 . T A 2425 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.96;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2458,243,0 chrIV 113554 . T C 2452 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=17.64;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2485,255,0 chrIV 113998 . A T 5395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.1343;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.371;QD=23.56;ReadPosRankSum=1.717;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5395,532,0 chrIV 114010 . T G 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=233;Dels=0.00;FS=3.878;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.448;QD=22.06;ReadPosRankSum=1.687;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5139,529,0 chrIV 114016 . A G 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=227;Dels=0.00;FS=5.627;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.527;QD=22.05;ReadPosRankSum=2.898;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:5006,514,0 chrIV 114040 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=201;Dels=0.00;FS=4.981;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.303;QD=20.71;ReadPosRankSum=3.381;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:4162,427,0 chrIV 114144 . T A 3162 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=23.42;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3195,313,0 chrIV 114147 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.79;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2996,315,0 chrIV 114170 . T G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=5.960;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-0.195;QD=20.96;ReadPosRankSum=1.708;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3009,306,0 chrIV 114279 . A T 2161 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.73;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2194,219,0 chrIV 114379 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=26.06;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2874,294,0 chrIV 114468 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.6039;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2902,292,0 chrIV 114755 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.536;QD=24.39;ReadPosRankSum=1.699;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2643,273,0 chrIV 114797 . T C 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=96;Dels=0.00;FS=5.746;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.905;QD=20.77;ReadPosRankSum=2.926;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:2027,210,0 chrIV 115009 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.774;QD=23.68;ReadPosRankSum=1.634;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3363,357,0 chrIV 115035 . A C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.02;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3545,369,0 chrIV 115328 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.076;QD=25.66;ReadPosRankSum=1.653;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3387,351,0 chrIV 115541 . T A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.86;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3828,385,0 chrIV 115568 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.21;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3680,373,0 chrIV 115605 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.21;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3530,343,0 chrIV 116018 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=4.232;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.163;QD=22.55;ReadPosRankSum=1.699;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2468,255,0 chrIV 116227 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2823,291,0 chrIV 116257 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.04;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2975,295,0 chrIV 116332 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8934;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.026;QD=24.77;ReadPosRankSum=2.415;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3592,370,0 chrIV 116482 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=6.352;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.955;QD=24.43;ReadPosRankSum=2.365;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4300,442,0 chrIV 116782 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.434;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.208;QD=23.55;ReadPosRankSum=1.712;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,171:176:99:4145,433,0 chrIV 117170 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=23.58;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2014,198,0 chrIV 117241 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.20;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1912,198,0 chrIV 117248 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=21.06;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1928,198,0 chrIV 117352 . G A 1593 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=20.96;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1626,165,0 chrIV 117353 . G A 1652 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=21.74;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1685,165,0 chrIV 117362 . T C 1535 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=18.72;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1568,156,0 chrIV 117409 . A T 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;DP=103;Dels=0.00;FS=3.407;HaplotypeScore=1.9623;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-0.656;QD=15.19;ReadPosRankSum=1.194;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1598,156,0 chrIV 117441 . T C 2478 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=101.5126;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=19.98;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2511,264,0 chrIV 117532 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8065;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.72;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2429,243,0 chrIV 117622 . T C 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.567;QD=26.62;ReadPosRankSum=1.714;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:5058,520,0 chrIV 117705 . T A 3146 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.77;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3179,319,0 chrIV 117799 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.09;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4023,418,0 chrIV 117891 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1983;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=26.37;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3224,325,0 chrIV 117913 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.39;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2953,301,0 chrIV 117959 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.78;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2313,228,0 chrIV 118023 . A G 2089 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.22;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2122,219,0 chrIV 118053 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=23.00;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2678,265,0 chrIV 118130 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=5.068;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-1.732;QD=24.93;ReadPosRankSum=1.699;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2725,279,0 chrIV 118971 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=4.326;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.886;QD=20.64;ReadPosRankSum=1.634;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3632,373,0 chrIV 118983 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.88;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3777,391,0 chrIV 119301 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5196;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.88;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3726,373,0 chrIV 119568 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3429,337,0 chrIV 119603 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3357,346,0 chrIV 120030 . C T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3864,400,0 chrIV 120144 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3578,372,0 chrIV 120336 . T G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3254,336,0 chrIV 120465 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.699;QD=25.24;ReadPosRankSum=1.689;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4089,415,0 chrIV 121089 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.84;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3230,331,0 chrIV 121098 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.337;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.039;QD=22.63;ReadPosRankSum=1.628;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3065,315,0 chrIV 121593 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.17;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3207,330,0 chrIV 121624 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3604,367,0 chrIV 121676 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4023,406,0 chrIV 122050 . C A 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.45;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2413,240,0 chrIV 122163 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2149,210,0 chrIV 122309 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=26.63;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3042,306,0 chrIV 122365 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1024;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=24.90;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4009,409,0 chrIV 122524 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=24.69;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4394,451,0 chrIV 122546 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.60;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3650,381,0 chrIV 122560 . G C 3458.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.22;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3458,349,0 chrIV 122569 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.247;QD=19.71;ReadPosRankSum=1.689;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3206,325,0 chrIV 122617 . A G 3188 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.31;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3221,342,0 chrIV 122629 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.75;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3341,337,0 chrIV 122656 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=185;Dels=0.00;FS=6.078;HaplotypeScore=9.4806;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.831;QD=21.55;ReadPosRankSum=2.918;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:3986,418,0 chrIV 122724 . G A 5068.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=21.6283;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.21;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5068,499,0 chrIV 123113 . C A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4069,421,0 chrIV 123739 . T A 901 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.71;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:93:934,93,0 chrIV 123745 . A G 755 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.97;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:84:788,84,0 chrIV 124321 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.65;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5143,526,0 chrIV 124630 . A G 5733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=234;Dels=0.00;FS=2.612;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=1;MQRankSum=-0.579;QD=24.50;ReadPosRankSum=2.386;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:5733,592,0 chrIV 124666 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0200;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=23.17;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5121,508,0 chrIV 125130 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.417;QD=25.37;ReadPosRankSum=1.710;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,154:159:99:4034,409,0 chrIV 125401 . A T 2430 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2463,246,0 chrIV 125547 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3800,373,0 chrIV 127476 . T C 5533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=235;Dels=0.00;FS=11.363;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.301;QD=23.54;ReadPosRankSum=3.793;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:5,229:235:99:5533,574,0 chrIV 129270 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4475,445,0 chrIV 130517 . G T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=27.84;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3396,334,0 chrIV 130640 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.15;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3003,301,0 chrIV 130711 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.62;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2135,213,0 chrIV 130869 . C A 2557 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.36;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2590,255,0 chrIV 130934 . T G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.670;QD=25.37;ReadPosRankSum=2.920;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2900,303,0 chrIV 130967 . C A 2859 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.97;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2892,283,0 chrIV 131075 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.13;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3265,334,0 chrIV 131141 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.94;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3492,346,0 chrIV 131453 . T A 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=117;Dels=0.00;FS=15.809;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.322;QD=21.06;ReadPosRankSum=3.292;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2497,246,0 chrIV 131512 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.937;QD=22.50;ReadPosRankSum=1.619;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2801,285,0 chrIV 131600 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.87;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2709,271,0 chrIV 131625 . C A 3092 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.94;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3125,318,0 chrIV 131989 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.1827;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.82;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4905,514,0 chrIV 132120 . G C 4929.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.02;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4929,505,0 chrIV 132148 . T G 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=7.948;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.437;QD=25.07;ReadPosRankSum=2.298;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4888,508,0 chrIV 132259 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=28.19;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3247,316,0 chrIV 132281 . A T 3117 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=26.19;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3150,316,0 chrIV 132560 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3074,321,0 chrIV 134099 . T C 8089.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281;DP=340;Dels=0.00;FS=2.552;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=29;MQRankSum=2.648;QD=23.79;ReadPosRankSum=2.171;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:14,326:340:99:8089,770,0 chrIV 134634 . C T 5816.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.54;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5816,562,0 chrIV 135298 . T A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.73;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3411,346,0 chrIV 135409 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.5232;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.43;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2119,213,0 chrIV 136069 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.66;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3180,319,0 chrIV 136202 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3806,379,0 chrIV 136516 . C G 5964.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5964,607,0 chrIV 136920 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.577;QD=26.48;ReadPosRankSum=1.706;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3496,349,0 chrIV 136940 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.34;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3395,346,0 chrIV 136987 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.88;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2697,276,0 chrIV 137047 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.66;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3467,357,0 chrIV 137351 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=161;Dels=0.00;FS=9.328;HaplotypeScore=12.9267;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.129;QD=22.73;ReadPosRankSum=2.404;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3660,370,0 chrIV 137410 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.54;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3806,391,0 chrIV 137511 . C G 1548 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.43;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1581,162,0 chrIV 137766 . C A 1441 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1474,147,0 chrIV 137808 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.60;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1069,105,0 chrIV 137877 . C T 262 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=13.10;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:30:295,30,0 chrIV 138088 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.98;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3414,337,0 chrIV 138482 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.594;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.066;QD=25.37;ReadPosRankSum=1.675;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4668,487,0 chrIV 138846 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.26;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4044,394,0 chrIV 139234 . T A 2745 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2778,279,0 chrIV 139426 . C A 2104 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2137,222,0 chrIV 139681 . C A 2479 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2512,255,0 chrIV 140808 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=207;Dels=0.00;FS=3.023;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.469;QD=22.00;ReadPosRankSum=2.378;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4555,466,0 chrIV 140835 . A C 4656.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.0979;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.36;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4656,475,0 chrIV 140862 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0312;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.45;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4119,412,0 chrIV 141006 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9625;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.14;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1886,186,0 chrIV 141245 . T A 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.597;QD=28.65;ReadPosRankSum=1.713;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:1,177:178:99:5099,511,0 chrIV 141469 . C T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.43;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4639,457,0 chrIV 141505 . G T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4774,475,0 chrIV 141575 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.86;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3829,388,0 chrIV 141605 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.15;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3205,319,0 chrIV 141921 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.0609;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.03;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3488,346,0 chrIV 142603 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.355;QD=25.05;ReadPosRankSum=1.711;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4209,424,0 chrIV 142711 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.6641;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.75;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4301,424,0 chrIV 142762 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=163;Dels=0.00;FS=2.707;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.045;QD=22.40;ReadPosRankSum=2.419;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3652,379,0 chrIV 142799 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4288,427,0 chrIV 143626 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.64;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3461,346,0 chrIV 143653 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.01;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2734,282,0 chrIV 143902 . C G 2601 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.50;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2634,276,0 chrIV 144208 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.62;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3669,361,0 chrIV 144230 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.033;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.901;QD=24.51;ReadPosRankSum=2.416;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3603,364,0 chrIV 144796 . G T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4369,439,0 chrIV 145562 . G C 5216.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.7036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5216,541,0 chrIV 145686 . A G 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=188;Dels=0.00;FS=2.608;HaplotypeScore=5.1490;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.634;QD=21.76;ReadPosRankSum=2.280;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4091,424,0 chrIV 145687 . T G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.3603;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.769;QD=22.35;ReadPosRankSum=1.528;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4201,427,0 chrIV 145769 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=135;Dels=0.00;FS=4.237;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.613;QD=23.59;ReadPosRankSum=1.705;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,130:135:99:3218,333,0 chrIV 145805 . T A 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=3.245;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.654;QD=25.47;ReadPosRankSum=1.706;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3413,340,0 chrIV 146231 . T A 6567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=263;Dels=0.00;FS=4.029;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.324;QD=24.97;ReadPosRankSum=1.640;SB=-3.071e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6567,652,0 chrIV 146252 . A G 6346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.431;DP=269;Dels=0.00;FS=2.910;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.023;QD=23.59;ReadPosRankSum=2.395;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:2,266:269:99:6346,655,0 chrIV 146675 . A C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.7444;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-0.870;QD=24.02;ReadPosRankSum=1.715;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5069,508,0 chrIV 147092 . A T 5332.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.5071;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.91;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5332,535,0 chrIV 147362 . C T 5090.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.9205;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=23.90;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5090,505,0 chrIV 147374 . A G 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=225;Dels=0.00;FS=7.386;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.518;QD=21.52;ReadPosRankSum=2.428;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4841,496,0 chrIV 147377 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.215;QD=21.23;ReadPosRankSum=1.686;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4798,490,0 chrIV 147431 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=4.792;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.949;QD=20.92;ReadPosRankSum=1.665;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4351,460,0 chrIV 147591 . G A 5444.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.3906;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.77;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5444,550,0 chrIV 147846 . T G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=154;Dels=0.00;FS=3.310;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.346;QD=21.78;ReadPosRankSum=1.686;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3354,340,0 chrIV 148010 . T G 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=228;Dels=0.00;FS=5.996;HaplotypeScore=18.9444;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.093;QD=23.36;ReadPosRankSum=2.951;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5326,544,0 chrIV 148149 . G A 9096.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.73;SB=-3.745e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:9096,908,0 chrIV 148638 . A G 6906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=317;Dels=0.00;FS=2.889;HaplotypeScore=12.4136;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.658;QD=21.79;ReadPosRankSum=2.372;SB=-3.734e+03 GT:AD:DP:GQ:PL 1/1:2,315:317:99:6906,709,0 chrIV 148986 . T C 2046 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2079,213,0 chrIV 149311 . A T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.55;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3540,358,0 chrIV 149500 . A G 5722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=242;Dels=0.00;FS=15.886;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.152;QD=23.64;ReadPosRankSum=3.795;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:5,236:242:99:5722,592,0 chrIV 149678 . C T 7120.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.47;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:7120,694,0 chrIV 149689 . T C 6867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=12.6530;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.367;QD=22.30;ReadPosRankSum=1.721;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:1,306:308:99:6867,700,0 chrIV 150223 . A G 7256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=299;Dels=0.00;FS=3.020;HaplotypeScore=20.4643;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.742;QD=24.27;ReadPosRankSum=2.433;SB=-3.831e+03 GT:AD:DP:GQ:PL 1/1:2,294:299:99:7256,754,0 chrIV 150307 . A G 6778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=311;Dels=0.00;FS=5.106;HaplotypeScore=20.5665;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.042;QD=21.79;ReadPosRankSum=3.394;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:4,305:311:99:6778,712,0 chrIV 150382 . G C 6016.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=22.1259;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.87;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:6016,622,0 chrIV 150486 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9613;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.73;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5094,499,0 chrIV 150567 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.65;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4924,499,0 chrIV 150634 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.64;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4236,415,0 chrIV 150745 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4324,427,0 chrIV 150784 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.680;QD=25.83;ReadPosRankSum=1.710;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4081,427,0 chrIV 150838 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=148;Dels=0.00;FS=2.095;HaplotypeScore=15.3916;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.414;QD=23.51;ReadPosRankSum=2.745;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3479,358,0 chrIV 151009 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.5812;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.87;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3963,415,0 chrIV 151696 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=191;Dels=0.00;FS=5.664;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.216;QD=22.48;ReadPosRankSum=2.921;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4294,445,0 chrIV 151765 . G A 4701.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4701,469,0 chrIV 152053 . A G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=187;Dels=0.00;FS=2.880;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.936;QD=25.75;ReadPosRankSum=2.343;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4815,490,0 chrIV 152269 . C T 5413.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.15;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5413,544,0 chrIV 152920 . T A 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.454;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.420;QD=25.56;ReadPosRankSum=1.682;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5291,538,0 chrIV 153229 . T A 5703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=225;Dels=0.00;FS=6.048;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.656;QD=25.35;ReadPosRankSum=2.871;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:5703,571,0 chrIV 153267 . G A 5779.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=26.27;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5779,565,0 chrIV 153283 . T C 5480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.172;QD=23.93;ReadPosRankSum=1.717;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5480,562,0 chrIV 153397 . A G 5298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=3.611;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.721;QD=25.35;ReadPosRankSum=1.699;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5298,547,0 chrIV 153415 . T C 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=217;Dels=0.00;FS=3.030;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.631;QD=24.16;ReadPosRankSum=2.336;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:5243,532,0 chrIV 153457 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=4.575;HaplotypeScore=7.4106;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.879;QD=22.80;ReadPosRankSum=1.714;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4446,457,0 chrIV 153559 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=193;Dels=0.00;FS=9.963;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.498;QD=21.27;ReadPosRankSum=2.424;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4106,435,0 chrIV 153605 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.3285;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.07;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4164,427,0 chrIV 153625 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.22;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3657,361,0 chrIV 153691 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=26.01;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4083,397,0 chrIV 153712 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9059;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.08;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4166,430,0 chrIV 154012 . C G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6845;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.53;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3496,364,0 chrIV 154372 . G A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.27;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5307,520,0 chrIV 154680 . C T 5922.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.50;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5922,586,0 chrIV 154696 . A C 5559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=245;Dels=0.00;FS=3.026;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.591;QD=22.69;ReadPosRankSum=2.389;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:5559,580,0 chrIV 155368 . C A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.4824;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.84;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4721,504,0 chrIV 155446 . T A 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=251;Dels=0.00;FS=3.868;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.235;QD=22.78;ReadPosRankSum=1.718;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5719,574,0 chrIV 155447 . T C 5700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=255;Dels=0.00;FS=11.634;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.067;QD=22.35;ReadPosRankSum=2.949;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:5700,574,0 chrIV 155661 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.7132;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.09;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2684,276,0 chrIV 155900 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.48;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2173,225,0 chrIV 156110 . A T 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=5.182;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.249;QD=25.80;ReadPosRankSum=1.704;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3181,310,0 chrIV 156137 . C A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4258;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.47;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3304,322,0 chrIV 156155 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.47;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2674,270,0 chrIV 156313 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.99;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3310,345,0 chrIV 156362 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2676;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.363;QD=25.06;ReadPosRankSum=1.704;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3141,324,0 chrIV 156591 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.36;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4565,460,0 chrIV 156943 . A G 5270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.275;QD=24.86;ReadPosRankSum=1.683;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5270,538,0 chrIV 157038 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.113;QD=24.63;ReadPosRankSum=1.650;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4187,430,0 chrIV 157244 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3679,361,0 chrIV 157424 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3415,352,0 chrIV 157918 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=9.8656;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.76;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,135,0 chrIV 157927 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.54;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1331,141,0 chrIV 158013 . C A 2009 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=10.9484;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.57;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2042,204,0 chrIV 158023 . C G 1468 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.82;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1501,156,0 chrIV 158032 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.70;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1529,162,0 chrIV 158137 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.92;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3769,367,0 chrIV 158474 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.727;HaplotypeScore=13.5011;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.282;QD=23.58;ReadPosRankSum=1.713;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4362,442,0 chrIV 158505 . T A 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=151;Dels=0.00;FS=7.360;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-1.213;QD=20.54;ReadPosRankSum=2.368;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3135,307,0 chrIV 158510 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=151;Dels=0.00;FS=10.308;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.180;QD=20.56;ReadPosRankSum=2.940;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3138,324,0 chrIV 158749 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=16.0976;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=26.14;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5201,517,0 chrIV 158929 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.80;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3880,406,0 chrIV 158963 . T A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.14;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3563,355,0 chrIV 158981 . A C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=2.848;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.412;QD=21.69;ReadPosRankSum=2.353;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3341,346,0 chrIV 159017 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.95;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3640,370,0 chrIV 159085 . A C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.67;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3404,352,0 chrIV 159133 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.52;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2853,283,0 chrIV 159190 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.62;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3082,318,0 chrIV 159318 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.53;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2723,285,0 chrIV 159320 . G C 2801 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.38;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2834,291,0 chrIV 159428 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2824,288,0 chrIV 159505 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=3.012;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.741;QD=26.02;ReadPosRankSum=2.371;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:4059,421,0 chrIV 159602 . C G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.74;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4531,469,0 chrIV 159777 . C T 7082.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.57;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:7082,700,0 chrIV 159954 . T C 6360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=263;Dels=0.00;FS=12.680;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.324;QD=24.18;ReadPosRankSum=2.897;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:3,260:263:99:6360,652,0 chrIV 160071 . G A 6097.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.3545;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.78;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6097,634,0 chrIV 160218 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.01;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4898,487,0 chrIV 160520 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4053,397,0 chrIV 160615 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.43;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2891,289,0 chrIV 160731 . A G 2776 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2809,288,0 chrIV 161006 . T C 2785 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.83;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2818,286,0 chrIV 161007 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.61;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2791,285,0 chrIV 161194 . T C 5839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=247;Dels=0.00;FS=2.963;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.823;QD=23.64;ReadPosRankSum=2.400;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:2,244:247:99:5839,598,0 chrIV 161220 . A G 5747.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.72;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5747,598,0 chrIV 161421 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.56;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3245,342,0 chrIV 162498 . C A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3497,349,0 chrIV 163327 . C A 2618 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2651,279,0 chrIV 164013 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.97;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3053,312,0 chrIV 164045 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=125;Dels=0.00;FS=8.414;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.510;QD=22.39;ReadPosRankSum=2.410;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2832,288,0 chrIV 164089 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.13;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2698,268,0 chrIV 164200 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.84;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2865,303,0 chrIV 164238 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=26.04;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2975,306,0 chrIV 164256 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=25.16;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2826,277,0 chrIV 164281 . C G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.25;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3274,339,0 chrIV 164439 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.9438;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.49;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3820,388,0 chrIV 164580 . C T 4961.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4961,499,0 chrIV 164987 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.1582;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.40;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2363,234,0 chrIV 165265 . A G 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=179;Dels=0.00;FS=5.947;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.669;QD=25.74;ReadPosRankSum=2.961;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4608,469,0 chrIV 165290 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.43;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4105,424,0 chrIV 165386 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.70;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3626,367,0 chrIV 165509 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.48;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3941,409,0 chrIV 166100 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3130,324,0 chrIV 166418 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.38;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2839,291,0 chrIV 166427 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.05;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2878,300,0 chrIV 166604 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.59;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3156,324,0 chrIV 166634 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=6.992;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.577;QD=24.31;ReadPosRankSum=2.416;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3574,370,0 chrIV 167295 . C T 5441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.1314;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.147;QD=23.97;ReadPosRankSum=-0.115;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:5441,510,0 chrIV 167687 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.78;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4472,448,0 chrIV 168796 . A G 6391.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-3.761e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6391,661,0 chrIV 170327 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.845;QD=23.91;ReadPosRankSum=1.646;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2926,300,0 chrIV 170349 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.44;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2412,243,0 chrIV 170354 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=132;Dels=0.00;FS=5.183;HaplotypeScore=111.4438;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.033;QD=16.72;ReadPosRankSum=3.378;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2240,228,0 chrIV 170455 . T C 6461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.632;QD=26.59;ReadPosRankSum=1.704;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:6461,670,0 chrIV 170722 . G A 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.624;QD=22.89;ReadPosRankSum=0.702;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5105,535,0 chrIV 170914 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6989;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.82;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3332,337,0 chrIV 170953 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.96;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3651,367,0 chrIV 171279 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.24;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3292,328,0 chrIV 171294 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=142;Dels=0.00;FS=11.846;HaplotypeScore=11.9461;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.381;QD=20.21;ReadPosRankSum=2.950;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2903,295,0 chrIV 171817 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=8.012;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.817;QD=24.95;ReadPosRankSum=2.410;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3152,333,0 chrIV 172805 . T A 6447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=239;Dels=0.00;FS=5.568;HaplotypeScore=12.6618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.004;QD=26.97;ReadPosRankSum=2.861;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:6447,634,0 chrIV 172927 . A G 5334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=250;Dels=0.00;FS=2.570;HaplotypeScore=15.9038;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.343;QD=21.34;ReadPosRankSum=2.963;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:3,244:250:99:5334,553,0 chrIV 173380 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.47;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3220,322,0 chrIV 173416 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.126;QD=24.62;ReadPosRankSum=1.617;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2987,309,0 chrIV 173461 . C A 2544 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.23;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2577,267,0 chrIV 174089 . G A 357 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.7162;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=15.52;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:390,39,0 chrIV 174546 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9986;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.85;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3929,391,0 chrIV 174831 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=20.39;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2357,231,0 chrIV 174862 . C A 2001 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=99.1763;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=17.40;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2034,198,0 chrIV 174887 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=14.93;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1571,162,0 chrIV 174905 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=15.75;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1561,159,0 chrIV 174995 . T C 1430 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.956;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-0.127;QD=11.17;ReadPosRankSum=2.391;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:1463,177,0 chrIV 174996 . T C 1352 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.958;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.279;QD=10.56;ReadPosRankSum=2.411;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1385,173,0 chrIV 174998 . G T 1345 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=10.51;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1378,173,0 chrIV 175307 . C G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.35;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3583,367,0 chrIV 175412 . G T 3091 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3124,313,0 chrIV 175847 . A G 5043.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5043,529,0 chrIV 175946 . C T 4769.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.10;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4769,484,0 chrIV 176019 . A G 5251.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.6594;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.34;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5251,544,0 chrIV 176064 . A G 7408.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.90;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7408,757,0 chrIV 176423 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=5.580;HaplotypeScore=17.1030;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.530;QD=20.90;ReadPosRankSum=1.682;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4347,451,0 chrIV 176519 . T C 4588.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.8090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4588,457,0 chrIV 176628 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.13;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2471,246,0 chrIV 177157 . C G 5045.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.0419;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.93;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5045,520,0 chrIV 177160 . T C 4920.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.9833;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.94;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4920,502,0 chrIV 177363 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.38;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4340,436,0 chrIV 177633 . T C 5050.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2394;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.38;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5050,526,0 chrIV 177780 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.5537;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.39;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4654,478,0 chrIV 177807 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.51;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4585,457,0 chrIV 178267 . A C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=4.213;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.084;QD=24.17;ReadPosRankSum=1.704;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3079,318,0 chrIV 178389 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.0170;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.916;QD=24.96;ReadPosRankSum=1.115;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4343,410,0 chrIV 178453 . T G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.794;QD=25.07;ReadPosRankSum=1.713;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4537,466,0 chrIV 178489 . C G 4841.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.35;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4841,505,0 chrIV 178580 . A C 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=6.601;HaplotypeScore=13.0482;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.449;QD=25.09;ReadPosRankSum=2.424;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4892,508,0 chrIV 178909 . C T 5552.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.4618;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.90;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5552,571,0 chrIV 178930 . G A 4790.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.6944;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.03;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4790,505,0 chrIV 179020 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=3.979;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.466;QD=24.48;ReadPosRankSum=1.714;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4847,502,0 chrIV 179105 . C A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.94;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4564,454,0 chrIV 179134 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.30;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4732,469,0 chrIV 179240 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.27;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3167,322,0 chrIV 179328 . G C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.92;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3904,394,0 chrIV 179480 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=25.65;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3411,337,0 chrIV 179487 . C G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.40;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3315,342,0 chrIV 179632 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.77;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2957,292,0 chrIV 179651 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=3.226;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.363;QD=19.45;ReadPosRankSum=1.676;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2484,261,0 chrIV 179674 . G T 2901 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.49;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2934,292,0 chrIV 179696 . A C 2558 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.40;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2591,264,0 chrIV 179714 . A C 2768 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=17.86;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:2801,288,0 chrIV 179755 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.01;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2872,283,0 chrIV 180086 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.38;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3654,373,0 chrIV 180121 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.46;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3539,361,0 chrIV 180382 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=26.80;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3403,352,0 chrIV 180628 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.3027;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.09;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4337,442,0 chrIV 180644 . A C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.47;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4130,424,0 chrIV 181978 . T G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=191;Dels=0.00;FS=7.223;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.002;QD=18.74;ReadPosRankSum=2.191;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:3580,367,0 chrIV 181988 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.5909;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.72;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3925,385,0 chrIV 182019 . G C 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.223;QD=20.37;ReadPosRankSum=-0.928;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4339,439,0 chrIV 182498 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=26.48;ReadPosRankSum=1.705;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:3443,349,0 chrIV 182600 . G C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.0490;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.61;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4014,409,0 chrIV 182859 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.78;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4302,427,0 chrIV 183011 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.68;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4216,418,0 chrIV 183645 . C T 5460.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.40;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5460,556,0 chrIV 183726 . G A 6518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.6176;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.224;QD=25.56;ReadPosRankSum=-0.265;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:6518,679,0 chrIV 183756 . T C 6347.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.83;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6347,655,0 chrIV 183759 . G T 6209.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.66;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6209,634,0 chrIV 183912 . A G 6491.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.3869;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.78;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6491,667,0 chrIV 183975 . C T 5352.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=20.2321;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.55;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5352,535,0 chrIV 184169 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.35;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3752,373,0 chrIV 184221 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=139;Dels=0.00;FS=2.590;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.399;QD=22.48;ReadPosRankSum=2.921;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3158,330,0 chrIV 184320 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.340;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.141;QD=25.94;ReadPosRankSum=1.676;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3250,331,0 chrIV 184697 . A T 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.828;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.420;QD=20.24;ReadPosRankSum=1.609;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3420,340,0 chrIV 184893 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=25.98;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4494,448,0 chrIV 185023 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.04;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5130,526,0 chrIV 185188 . G A 6399.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.9649;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=26.66;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6399,628,0 chrIV 185256 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=25.12;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4597,454,0 chrIV 185449 . T C 3499.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=158;Dels=0.00;FS=5.446;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.026;QD=22.15;ReadPosRankSum=2.878;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3499,361,0 chrIV 185452 . G A 3500.01 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=22.15;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3500,346,0 chrIV 185458 . C G 3662.01 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=23.47;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3662,373,0 chrIV 185528 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.98;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4264,448,0 chrIV 185548 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.78;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4465,451,0 chrIV 185567 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.07;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4038,409,0 chrIV 185597 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.25;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3422,343,0 chrIV 185668 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.64;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4374,436,0 chrIV 185683 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=194;Dels=0.00;FS=4.275;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.383;QD=21.15;ReadPosRankSum=1.714;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,189:194:99:4103,421,0 chrIV 185704 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=21.73;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3825,391,0 chrIV 185746 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5755;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.05;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3528,352,0 chrIV 185783 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=145;Dels=0.00;FS=6.752;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.026;QD=25.59;ReadPosRankSum=2.415;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3710,376,0 chrIV 186841 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.62;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3689,376,0 chrIV 187060 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.75;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4171,427,0 chrIV 187198 . G T 5419.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.09;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5419,541,0 chrIV 187216 . C T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.79;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5106,511,0 chrIV 187293 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8323;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.993;QD=25.65;ReadPosRankSum=1.596;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4591,463,0 chrIV 187696 . G T 5491.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.66;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5491,568,0 chrIV 187789 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4318,427,0 chrIV 188103 . C G 1758 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=27.47;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1791,186,0 chrIV 188150 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.82;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2021,207,0 chrIV 188469 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3725,379,0 chrIV 189502 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.88;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3898,391,0 chrIV 189732 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.2732;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.13;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4391,439,0 chrIV 190140 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4257,436,0 chrIV 190212 . C A 5295.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.58;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5295,523,0 chrIV 190497 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.48;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2821,277,0 chrIV 190604 . T G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.649;QD=23.67;ReadPosRankSum=1.704;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2992,312,0 chrIV 190810 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.97;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3821,394,0 chrIV 190888 . C G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3926,400,0 chrIV 191044 . G C 4840.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4840,493,0 chrIV 191112 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=2.908;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.453;QD=24.89;ReadPosRankSum=2.346;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3559,370,0 chrIV 191355 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2142,225,0 chrIV 192247 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.522;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.131;QD=25.13;ReadPosRankSum=1.636;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3644,373,0 chrIV 192278 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.26;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3387,343,0 chrIV 192319 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.67;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2401,252,0 chrIV 192451 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.25;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2737,279,0 chrIV 192839 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.1387;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=27.35;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2932,291,0 chrIV 193043 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=7.810;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.564;QD=24.70;ReadPosRankSum=2.372;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3977,412,0 chrIV 193103 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=22.15;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3611,358,0 chrIV 193107 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.873;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=-0.936;QD=20.20;ReadPosRankSum=2.420;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3312,348,0 chrIV 193118 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=18.72;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2934,297,0 chrIV 193121 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=18.00;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2913,300,0 chrIV 193154 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-1.125;QD=19.21;ReadPosRankSum=1.710;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2991,307,0 chrIV 193178 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.53;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2904,292,0 chrIV 193214 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=20.61;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3298,328,0 chrIV 193229 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=19.79;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3364,348,0 chrIV 193242 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=3.342;HaplotypeScore=2.6794;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.558;QD=18.80;ReadPosRankSum=1.713;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3328,337,0 chrIV 193254 . A G 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.2386;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-0.144;QD=17.26;ReadPosRankSum=1.713;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3174,330,0 chrIV 193364 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4994;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=25.61;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4302,421,0 chrIV 193567 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=22.91;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3688,364,0 chrIV 193568 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=23.46;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3706,361,0 chrIV 193583 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=7.946;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.545;QD=20.72;ReadPosRankSum=2.421;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3502,349,0 chrIV 193595 . A G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=170;Dels=0.00;FS=5.715;HaplotypeScore=9.7100;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=1.669;QD=18.39;ReadPosRankSum=2.958;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3160,327,0 chrIV 193723 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=27.11;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:4093,400,0 chrIV 194241 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.203;QD=22.95;ReadPosRankSum=1.679;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3085,313,0 chrIV 194317 . A G 390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=135;Dels=0.01;FS=2.850;HaplotypeScore=4.7294;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.500;QD=2.89;ReadPosRankSum=2.412;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:45:423,45,0 chrIV 195095 . C T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.35;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4437,454,0 chrIV 195098 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.85;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4365,451,0 chrIV 195160 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.7239;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.48;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4227,436,0 chrIV 195463 . A G 5776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=248;Dels=0.00;FS=2.900;HaplotypeScore=17.4017;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.055;QD=23.29;ReadPosRankSum=2.419;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:2,242:248:99:5776,589,0 chrIV 195920 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.125;QD=23.54;ReadPosRankSum=1.683;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4966,505,0 chrIV 196014 . A G 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.879;QD=24.56;ReadPosRankSum=1.697;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4814,493,0 chrIV 196443 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2646,264,0 chrIV 196800 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.2356;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.237;QD=20.98;ReadPosRankSum=1.629;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3524,367,0 chrIV 196806 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.09;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3396,357,0 chrIV 196851 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.484;QD=21.75;ReadPosRankSum=1.679;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4306,433,0 chrIV 197574 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.74;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4388,463,0 chrIV 197883 . G C 4700.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.9622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4700,487,0 chrIV 198420 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.42;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4041,429,0 chrIV 198659 . G A 5463.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.7205;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.18;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5463,535,0 chrIV 198797 . G A 5863.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8495;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.53;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5863,586,0 chrIV 198950 . A T 8468.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=21.3795;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.54;SB=-3.863e+03 GT:AD:DP:GQ:PL 1/1:0,345:345:99:8468,868,0 chrIV 199259 . G A 7553.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=24.5654;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.09;SB=-3.804e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7553,760,0 chrIV 199393 . G A 7372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=21.6666;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.159;QD=24.91;ReadPosRankSum=1.345;SB=-3.808e+03 GT:AD:DP:GQ:PL 1/1:1,294:296:99:7372,736,0 chrIV 199642 . C T 6019.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0826;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.18;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6019,592,0 chrIV 199794 . T C 6320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=253;Dels=0.00;FS=3.028;HaplotypeScore=16.6598;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.583;QD=24.98;ReadPosRankSum=2.411;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:6320,637,0 chrIV 199937 . A G 7447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=291;Dels=0.00;FS=3.655;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.421;QD=25.59;ReadPosRankSum=1.696;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:1,289:291:99:7447,772,0 chrIV 200220 . C T 5781.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.99;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5781,601,0 chrIV 200337 . C T 5185.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.1842;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,220:225:99:5185,555,0 chrIV 200994 . T C 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.684;QD=26.44;ReadPosRankSum=1.714;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:5209,541,0 chrIV 201393 . C T 5033.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5033,520,0 chrIV 201691 . A T 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=2.949;HaplotypeScore=9.4774;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.320;QD=27.21;ReadPosRankSum=2.379;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2863,283,0 chrIV 202117 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=205;Dels=0.00;FS=6.174;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.093;QD=23.40;ReadPosRankSum=2.388;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:4796,484,0 chrIV 202127 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.16;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4735,472,0 chrIV 202229 . T G 4036.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8933;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.46;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4036,418,0 chrIV 202448 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.421;QD=26.91;ReadPosRankSum=1.685;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3983,403,0 chrIV 202579 . T G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.102;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.292;QD=22.64;ReadPosRankSum=1.677;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2954,295,0 chrIV 202591 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.795;QD=21.58;ReadPosRankSum=1.704;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2687,276,0 chrIV 202790 . A T 2475 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.35;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2508,255,0 chrIV 202902 . C T 145.13 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=97.2966;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=1.17;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:18:178,18,0 chrIV 203146 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.90;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4159,427,0 chrIV 203446 . G A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=19.3199;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.87;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5300,526,0 chrIV 203647 . G T 5188.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.07;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5188,514,0 chrIV 203795 . G A 4557.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.49;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4557,445,0 chrIV 204077 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2400;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=26.18;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3980,385,0 chrIV 204271 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.806;QD=26.05;ReadPosRankSum=2.418;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:4090,418,0 chrIV 204319 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.13;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3894,400,0 chrIV 204322 . C T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.99;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3848,391,0 chrIV 204349 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.78;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2966,300,0 chrIV 204361 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.45;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3122,313,0 chrIV 204469 . T C 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=3.211;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.618;QD=25.16;ReadPosRankSum=1.697;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5032,502,0 chrIV 204557 . A C 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=3.028;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.101;QD=26.25;ReadPosRankSum=2.421;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4541,469,0 chrIV 204805 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.81;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4182,409,0 chrIV 205004 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3456,337,0 chrIV 205310 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=113;Dels=0.00;FS=6.975;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.011;QD=25.12;ReadPosRankSum=2.317;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2872,291,0 chrIV 205528 . T C 8324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=20.0313;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=1.759;QD=26.26;ReadPosRankSum=2.418;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,314:317:99:8324,871,0 chrIV 205765 . C T 9168.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;DP=466;Dels=0.00;FS=0.000;HaplotypeScore=10.6729;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.017;QD=19.67;ReadPosRankSum=1.197;SB=-5.027e+03 GT:AD:DP:GQ:PL 1/1:1,459:466:99:9168,949,0 chrIV 205771 . T C 8527.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=445;Dels=0.00;FS=5.111;HaplotypeScore=16.5248;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.757;QD=19.16;ReadPosRankSum=3.364;SB=-4.890e+03 GT:AD:DP:GQ:PL 1/1:4,440:445:99:8527,883,0 chrIV 205915 . G A 8646.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=370;Dels=0.00;FS=5.026;HaplotypeScore=35.7669;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.197;QD=23.37;ReadPosRankSum=1.723;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:1,368:370:99:8646,860,0 chrIV 206290 . A G 6019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.357;QD=22.89;ReadPosRankSum=1.719;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:1,261:263:99:6019,625,0 chrIV 209791 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.341;QD=25.61;ReadPosRankSum=1.706;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3432,352,0 chrIV 210091 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.248;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.670;QD=24.19;ReadPosRankSum=0.647;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3628,345,0 chrIV 210594 . G A 1441 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1474,147,0 chrIV 210686 . A T 190.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=11.18;SB=-3.107e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:223,21,0 chrIV 210833 . A G 531 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.42;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:564,57,0 chrIV 211091 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=26.42;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2226,234,0 chrIV 211126 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.95;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1925,204,0 chrIV 211275 . G A 849 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=15.72;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:90:882,90,0 chrIV 211301 . C T 447 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=16.56;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:48:480,48,0 chrIV 211370 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.37;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1589,159,0 chrIV 211536 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0299;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.266;QD=26.06;ReadPosRankSum=-0.132;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4457,434,0 chrIV 211612 . G T 7732.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.55;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:7732,775,0 chrIV 211684 . T C 5337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=238;Dels=0.00;FS=2.984;HaplotypeScore=12.4611;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.961;QD=22.42;ReadPosRankSum=2.398;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:2,234:238:99:5337,547,0 chrIV 211831 . A G 5570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=243;Dels=0.00;FS=2.494;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.136;QD=22.92;ReadPosRankSum=2.905;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:5570,568,0 chrIV 211876 . G T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=16.4524;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.59;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4247,424,0 chrIV 211933 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.5843;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.26;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4707,484,0 chrIV 211978 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.72;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3831,391,0 chrIV 212036 . T C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.235;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.437;QD=23.48;ReadPosRankSum=1.697;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2381,243,0 chrIV 212222 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=72.1321;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=22.02;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1927,195,0 chrIV 212251 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=2.642;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=1.638;QD=18.94;ReadPosRankSum=2.325;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1529,156,0 chrIV 212267 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-1.571;QD=18.18;ReadPosRankSum=2.315;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1360,138,0 chrIV 212303 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.94;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1459,144,0 chrIV 212370 . A T 1635 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=24.40;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1668,165,0 chrIV 212428 . T A 615 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.0501;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=17.08;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:648,66,0 chrIV 212440 . G T 31.77 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;QD=1.38;SB=-1.918e+02 GT:AD:DP:GQ:PL 1/1:2,19:23:6:63,6,0 chrIV 212460 . A C 213.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.9847;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;MQRankSum=1.561;QD=10.14;ReadPosRankSum=1.561;SB=-8.604e+01 GT:AD:DP:GQ:PL 1/1:1,20:21:24:246,24,0 chrIV 212479 . G C 287 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=12.48;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:320,33,0 chrIV 212482 . T G 320 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=13.91;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:353,36,0 chrIV 212488 . A G 314 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=13.65;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:347,36,0 chrIV 212616 . T C 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-1.436;QD=15.51;ReadPosRankSum=1.139;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:60:576,60,0 chrIV 212681 . T C 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9905;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-0.678;QD=17.41;ReadPosRankSum=1.682;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1234,132,0 chrIV 212682 . T A 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7792;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-0.643;QD=17.26;ReadPosRankSum=1.683;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1241,129,0 chrIV 212852 . A C 2203 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.48;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2236,231,0 chrIV 212881 . T C 2496 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0379;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.52;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2529,255,0 chrIV 213112 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.6020;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.55;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2598,276,0 chrIV 213530 . C T 5449.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=24.55;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5449,538,0 chrIV 213539 . C T 5387.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.7723;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.05;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5387,532,0 chrIV 213698 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.4522;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.59;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4428,451,0 chrIV 214436 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.85;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4456,442,0 chrIV 214858 . C T 5236.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.9399;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.47;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5236,511,0 chrIV 215003 . T C 5289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=3.757;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.198;QD=23.20;ReadPosRankSum=1.717;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5289,532,0 chrIV 215004 . T C 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=3.738;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.725;QD=22.88;ReadPosRankSum=1.702;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5217,529,0 chrIV 215266 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.22;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4564,448,0 chrIV 215393 . T C 4907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=205;Dels=0.00;FS=8.829;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.898;QD=23.94;ReadPosRankSum=3.271;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:4,200:205:99:4907,499,0 chrIV 215523 . T C 6005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=233;Dels=0.00;FS=3.006;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.575;QD=25.77;ReadPosRankSum=2.428;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:6005,607,0 chrIV 215967 . G C 4632.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.95;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4632,472,0 chrIV 216140 . A G 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=3.110;HaplotypeScore=11.4942;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.544;QD=25.45;ReadPosRankSum=1.701;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5649,568,0 chrIV 216293 . G T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.31;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4789,475,0 chrIV 216405 . A T 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=2.802;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.435;QD=24.13;ReadPosRankSum=2.381;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3474,346,0 chrIV 216465 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=6.551;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.396;QD=26.94;ReadPosRankSum=2.404;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:4365,445,0 chrIV 217351 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=27.00;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2679,264,0 chrIV 217405 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.97;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2403,237,0 chrIV 217696 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=25.46;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3063,321,0 chrIV 217732 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.34;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2321,237,0 chrIV 217745 . A G 2009 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.83;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2042,210,0 chrIV 217775 . T A 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=4.214;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.201;QD=22.87;ReadPosRankSum=1.659;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2206,219,0 chrIV 217904 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.04;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1990,228,0 chrIV 217905 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.51;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2022,231,0 chrIV 217975 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=24.67;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2599,270,0 chrIV 218065 . T C 3791.01 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=7;QD=25.97;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3791,388,0 chrIV 218512 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.59;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2413,246,0 chrIV 218572 . A T 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.481;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.117;QD=26.79;ReadPosRankSum=1.700;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2900,283,0 chrIV 218669 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=132;Dels=0.00;FS=2.792;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.121;QD=26.42;ReadPosRankSum=2.394;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3487,352,0 chrIV 218767 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3451,357,0 chrIV 218923 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.703;HaplotypeScore=8.7047;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.641;QD=22.17;ReadPosRankSum=1.678;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2871,303,0 chrIV 219175 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2327,231,0 chrIV 219303 . C G 2812 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2845,291,0 chrIV 219340 . C A 2620 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0676;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.19;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2653,262,0 chrIV 219716 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.42;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5343,529,0 chrIV 220373 . G A 6256.01 filter AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=10;QD=25.33;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6256,625,0 chrIV 220433 . G A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=22.02;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5329,567,0 chrIV 220445 . G A 5429.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=22.72;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5429,532,0 chrIV 220463 . C T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=1;QD=20.17;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4982,502,0 chrIV 221090 . C A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3378,331,0 chrIV 221175 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2169,216,0 chrIV 221471 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=22.25;ReadPosRankSum=1.588;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1101,111,0 chrIV 221626 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=26.66;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1579,162,0 chrIV 221675 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=28.07;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2279,228,0 chrIV 221893 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.83;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2631,264,0 chrIV 221899 . T A 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.431;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.320;QD=20.15;ReadPosRankSum=1.679;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2653,259,0 chrIV 222025 . C A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.74;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3583,355,0 chrIV 222073 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.03;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2396,252,0 chrIV 222082 . A G 2509 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.23;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2542,267,0 chrIV 222257 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.77;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2882,283,0 chrIV 222481 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3397,340,0 chrIV 222741 . C A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.3087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4450,445,0 chrIV 223242 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1756;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.36;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4531,472,0 chrIV 223328 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.70;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3244,313,0 chrIV 223356 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.86;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2432,255,0 chrIV 223377 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.11;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2708,288,0 chrIV 223943 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3240,319,0 chrIV 224112 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=26.25;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4043,406,0 chrIV 224747 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3349,328,0 chrIV 224809 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.59;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3752,367,0 chrIV 224854 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.65;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3976,391,0 chrIV 225248 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.94;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4526,448,0 chrIV 225458 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.52;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4265,436,0 chrIV 225743 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.00;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3288,337,0 chrIV 226059 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.41;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4780,490,0 chrIV 226148 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.7083;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.554;QD=24.70;ReadPosRankSum=1.679;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4842,493,0 chrIV 226209 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.91;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5131,499,0 chrIV 226314 . C T 6449.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.11;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:6449,625,0 chrIV 227035 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=26.95;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3800,400,0 chrIV 227115 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.7212;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;MQRankSum=-1.386;QD=19.03;ReadPosRankSum=1.713;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3425,349,0 chrIV 227127 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=18.31;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3256,333,0 chrIV 227133 . C T 2931 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=15.93;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2964,303,0 chrIV 227138 . G A 2924 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=16.34;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2957,295,0 chrIV 227141 . G A 2719 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=15.19;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2752,271,0 chrIV 227151 . G C 2860 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=15.54;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2893,306,0 chrIV 227285 . T A 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=7.385;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=1.090;QD=17.36;ReadPosRankSum=2.363;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2012,210,0 chrIV 227289 . A G 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=5.959;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-0.882;QD=17.80;ReadPosRankSum=2.937;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2009,213,0 chrIV 227299 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;QD=17.18;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2026,216,0 chrIV 227300 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=16.79;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1997,216,0 chrIV 227375 . T A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.78;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3667,381,0 chrIV 227641 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=26.19;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5658,562,0 chrIV 228112 . T G 4703.01 filter AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.1456;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=73;QD=17.68;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:42,223:266:99:4703,493,0 chrIV 228430 . A G 4203.01 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=12;QD=21.02;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4203,421,0 chrIV 228436 . C T 4146.01 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=11;QD=20.32;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4146,409,0 chrIV 228508 . G C 4190.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6696;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=23.15;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4190,433,0 chrIV 228893 . T C 2526 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.39;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2559,270,0 chrIV 229033 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.62;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2865,291,0 chrIV 229042 . T C 2805 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.74;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2838,294,0 chrIV 229260 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.171;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.449;QD=23.61;ReadPosRankSum=1.638;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2654,270,0 chrIV 229467 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=26.55;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3691,367,0 chrIV 229690 . A C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=6.543;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;MQRankSum=-1.535;QD=21.59;ReadPosRankSum=2.412;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2818,291,0 chrIV 229702 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=88.6497;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-0.400;QD=20.78;ReadPosRankSum=1.679;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2735,279,0 chrIV 229828 . G C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.76;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3493,363,0 chrIV 229843 . A C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=3.480;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.266;QD=23.26;ReadPosRankSum=1.688;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3652,379,0 chrIV 229868 . T A 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6134;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.800;QD=24.28;ReadPosRankSum=1.660;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3520,349,0 chrIV 230153 . A C 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.096;QD=26.13;ReadPosRankSum=1.715;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5200,526,0 chrIV 230620 . T A 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.681;QD=25.16;ReadPosRankSum=1.629;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1744,180,0 chrIV 230677 . T C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.039;QD=26.52;ReadPosRankSum=1.693;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2367,243,0 chrIV 230893 . C T 4951.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7951;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.52;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4951,499,0 chrIV 231260 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.8357;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.39;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4959,508,0 chrIV 231317 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.61;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3790,391,0 chrIV 231400 . A T 5713.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.47;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5713,562,0 chrIV 231525 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.83;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4597,472,0 chrIV 231562 . T C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=215;Dels=0.00;FS=5.953;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.795;QD=24.60;ReadPosRankSum=2.967;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:3,208:215:99:5288,550,0 chrIV 231629 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=160;Dels=0.00;FS=9.791;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.082;QD=25.34;ReadPosRankSum=2.956;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:4054,406,0 chrIV 231806 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=144;Dels=0.00;FS=5.002;HaplotypeScore=11.9660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.365;QD=23.03;ReadPosRankSum=3.348;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:3316,340,0 chrIV 231960 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.97;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2380,249,0 chrIV 232127 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1020,105,0 chrIV 232181 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.44;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1200,117,0 chrIV 232245 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=5.4461;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.87;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1131,111,0 chrIV 232386 . C G 1759 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=26.65;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1792,180,0 chrIV 232777 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=20.71;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3334,328,0 chrIV 232783 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.12;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3443,357,0 chrIV 232831 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.885;QD=20.38;ReadPosRankSum=1.713;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3770,397,0 chrIV 232936 . A G 5000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.581;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.776;QD=24.39;ReadPosRankSum=1.664;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:5000,508,0 chrIV 232994 . A G 6734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=267;Dels=0.00;FS=7.951;HaplotypeScore=16.4416;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=2.022;QD=25.22;ReadPosRankSum=2.431;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:2,263:267:99:6734,685,0 chrIV 233071 . A C 7053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=272;Dels=0.00;FS=10.896;HaplotypeScore=14.3705;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.196;QD=25.93;ReadPosRankSum=2.974;SB=-3.219e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:7053,718,0 chrIV 233134 . A G 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=236;Dels=0.00;FS=8.910;HaplotypeScore=22.8621;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.793;QD=21.83;ReadPosRankSum=3.288;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:4,229:236:99:5151,538,0 chrIV 233173 . G A 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.021;DP=247;Dels=0.00;FS=3.892;HaplotypeScore=11.8072;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.403;QD=20.85;ReadPosRankSum=1.265;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5151,508,0 chrIV 233198 . C T 6017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.2014;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.073;QD=21.19;ReadPosRankSum=1.634;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:6017,607,0 chrIV 233551 . C A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.77;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4732,475,0 chrIV 233636 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.11;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3641,355,0 chrIV 233915 . A C 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.3324;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.358;QD=21.49;ReadPosRankSum=1.673;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1301,132,0 chrIV 234097 . A T 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=81.3321;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=1.695;QD=21.59;ReadPosRankSum=1.511;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2062,195,0 chrIV 234231 . C A 3102 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.23;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3135,327,0 chrIV 234289 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=27.30;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3822,391,0 chrIV 234361 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.433;QD=26.57;ReadPosRankSum=1.703;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3221,331,0 chrIV 234547 . C G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.13;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3397,343,0 chrIV 234968 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=154;Dels=0.00;FS=5.259;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.040;QD=25.38;ReadPosRankSum=3.402;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3909,406,0 chrIV 235466 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=151;Dels=0.00;FS=5.830;HaplotypeScore=11.4510;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.618;QD=22.61;ReadPosRankSum=2.819;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3414,337,0 chrIV 235604 . T C 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.432;QD=23.54;ReadPosRankSum=1.676;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4402,448,0 chrIV 235676 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.947;QD=23.12;ReadPosRankSum=1.705;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2992,304,0 chrIV 235902 . C G 970 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.05;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1003,102,0 chrIV 236074 . A G 658 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=14.30;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:691,69,0 chrIV 236080 . T C 691 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=14.70;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:724,75,0 chrIV 236082 . A T 750 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=15.96;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:783,78,0 chrIV 236289 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=25.30;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4655,481,0 chrIV 236604 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=164;Dels=0.00;FS=4.640;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.924;QD=22.52;ReadPosRankSum=-0.606;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3693,341,0 chrIV 236610 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5200;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.556;QD=21.65;ReadPosRankSum=1.711;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3572,373,0 chrIV 236619 . T C 3636.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.39;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3636,382,0 chrIV 236627 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.64;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3984,391,0 chrIV 236928 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4515,472,0 chrIV 237186 . A C 6066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.0550;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.835;QD=25.49;ReadPosRankSum=1.612;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:6066,616,0 chrIV 237219 . G A 6298.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.6471;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.51;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6298,655,0 chrIV 237312 . C T 7073.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=19.6820;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.47;SB=-3.573e+03 GT:AD:DP:GQ:PL 1/1:0,284:289:99:7073,751,0 chrIV 237441 . T G 7556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=313;Dels=0.00;FS=3.081;HaplotypeScore=16.5300;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.440;QD=24.14;ReadPosRankSum=1.710;SB=-4.224e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:7556,778,0 chrIV 237522 . G A 7096.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=25.90;SB=-3.910e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:7096,703,0 chrIV 237570 . G A 6102.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.70;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6102,607,0 chrIV 237588 . T C 5418.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.6426;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.35;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5418,544,0 chrIV 237897 . G A 4958.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.51;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4958,490,0 chrIV 238826 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=11.8890;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3920,397,0 chrIV 239573 . T C 6354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.224;QD=27.39;ReadPosRankSum=1.702;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:6354,643,0 chrIV 239643 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=201;Dels=0.00;FS=9.098;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=2.660;QD=22.28;ReadPosRankSum=2.843;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:3,195:201:99:4478,454,0 chrIV 239877 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=24.83;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5114,511,0 chrIV 239899 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.66;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3985,406,0 chrIV 239907 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.34;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3691,370,0 chrIV 239984 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.25;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2200,219,0 chrIV 240090 . T C 1843 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1876,192,0 chrIV 240232 . G A 1527 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1560,147,0 chrIV 240245 . C A 1386 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1419,135,0 chrIV 240258 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.74;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1495,147,0 chrIV 240375 . G C 4548.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=26.75;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4548,466,0 chrIV 240480 . T C 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3129;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-0.446;QD=24.89;ReadPosRankSum=1.714;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4829,496,0 chrIV 240532 . C A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=24.39;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5098,502,0 chrIV 240544 . A G 4851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-1.716;QD=22.67;ReadPosRankSum=1.700;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4851,484,0 chrIV 240564 . T G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.22;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4372,451,0 chrIV 240647 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=190;Dels=0.00;FS=20.237;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.926;QD=21.19;ReadPosRankSum=3.414;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:4,185:190:99:4026,406,0 chrIV 240657 . A C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.12;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3991,415,0 chrIV 240868 . G C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=25.78;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3351,343,0 chrIV 241166 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.99;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4129,397,0 chrIV 241206 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=7.220;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.316;QD=23.57;ReadPosRankSum=2.415;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3394,354,0 chrIV 242001 . G C 3832.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3832,391,0 chrIV 242997 . G A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4440,439,0 chrIV 244138 . T G 5155.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=19.3340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.30;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5155,526,0 chrIV 244279 . G C 5417.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5417,556,0 chrIV 245769 . G C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5191;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3912,400,0 chrIV 246448 . G C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.80;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,151:157:99:3736,379,0 chrIV 246743 . G C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.8314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4282,442,0 chrIV 248088 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2646,273,0 chrIV 248153 . G C 3060 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3093,316,0 chrIV 248513 . G C 2913 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2946,303,0 chrIV 248600 . C G 3167 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3200,328,0 chrIV 248899 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2083,207,0 chrIV 249264 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.0168;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.15;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3924,391,0 chrIV 249432 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.0786;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.95;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2667,267,0 chrIV 249508 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.66;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3516,355,0 chrIV 249541 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.42;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3394,349,0 chrIV 249576 . T G 3002 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.24;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3035,310,0 chrIV 249579 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.63;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3004,295,0 chrIV 249627 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=4.929;HaplotypeScore=9.0271;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.722;QD=23.07;ReadPosRankSum=1.711;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3899,406,0 chrIV 249679 . T C 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=2.679;HaplotypeScore=6.5362;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.416;QD=24.35;ReadPosRankSum=2.370;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4577,466,0 chrIV 249699 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.87;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4368,433,0 chrIV 250434 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.07;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2732,276,0 chrIV 250440 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.97;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2858,280,0 chrIV 250548 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=152;Dels=0.00;FS=5.137;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.729;QD=25.15;ReadPosRankSum=3.365;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3823,400,0 chrIV 250746 . A G 6180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=242;Dels=0.00;FS=3.464;HaplotypeScore=12.9427;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.501;QD=25.54;ReadPosRankSum=1.703;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:6180,631,0 chrIV 250782 . G A 6724.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.18;SB=-3.562e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6724,688,0 chrIV 251017 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.31;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4765,472,0 chrIV 251082 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.726;DP=161;Dels=0.00;FS=15.856;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.992;QD=21.00;ReadPosRankSum=4.648;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:8,153:161:99:3381,346,0 chrIV 251097 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.29;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3176,319,0 chrIV 251115 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.69;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2766,274,0 chrIV 251534 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3801,382,0 chrIV 251630 . T A 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=174;Dels=0.00;FS=6.095;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.665;QD=24.64;ReadPosRankSum=2.833;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4288,442,0 chrIV 251673 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.78;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4151,436,0 chrIV 251948 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.107;QD=26.79;ReadPosRankSum=1.680;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3563,358,0 chrIV 252063 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=25.16;ReadPosRankSum=1.706;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3422,354,0 chrIV 252124 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3944,385,0 chrIV 252202 . T A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.61;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4657,466,0 chrIV 252312 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.99;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4049,403,0 chrIV 252376 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.652;QD=24.33;ReadPosRankSum=1.672;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4282,448,0 chrIV 252597 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.25;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3953,403,0 chrIV 252749 . G T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=26.31;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4893,481,0 chrIV 252780 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=2.930;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.703;QD=25.09;ReadPosRankSum=2.419;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3990,409,0 chrIV 252798 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.47;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3841,376,0 chrIV 252925 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3911,406,0 chrIV 253388 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.44;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2097,207,0 chrIV 253390 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.797;QD=19.70;ReadPosRankSum=1.594;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2042,204,0 chrIV 253602 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=26.10;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2539,252,0 chrIV 253830 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.940;QD=23.59;ReadPosRankSum=1.683;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1684,171,0 chrIV 253832 . T A 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.841;QD=21.37;ReadPosRankSum=1.683;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1529,156,0 chrIV 253859 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.45;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1647,168,0 chrIV 254130 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2657,262,0 chrIV 254813 . T G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.216;QD=22.18;ReadPosRankSum=1.702;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2584,270,0 chrIV 254856 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.92;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3091,313,0 chrIV 255055 . C A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.77;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4150,406,0 chrIV 255364 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5961;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.41;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5057,517,0 chrIV 255481 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.78;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3321,328,0 chrIV 255692 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.094;QD=23.79;ReadPosRankSum=1.669;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2674,276,0 chrIV 255722 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.33;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2465,238,0 chrIV 255870 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2294,234,0 chrIV 255933 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1321,129,0 chrIV 256213 . T C 4664.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.60;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4664,469,0 chrIV 256413 . A G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.558;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.673;QD=20.81;ReadPosRankSum=3.699;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:5,85:90:99:1906,198,0 chrIV 257223 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.55;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3166,316,0 chrIV 257586 . G T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.90;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3755,364,0 chrIV 257984 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4460,442,0 chrIV 258190 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3559,364,0 chrIV 258250 . G C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3713,382,0 chrIV 258728 . G T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.67;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3873,382,0 chrIV 258793 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.22;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3395,346,0 chrIV 258800 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.47;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3296,345,0 chrIV 258830 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.08;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3124,307,0 chrIV 258881 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3540;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=26.02;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3409,331,0 chrIV 259049 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=26.09;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4565,457,0 chrIV 259211 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.304;QD=24.33;ReadPosRankSum=1.712;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4136,427,0 chrIV 259676 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1773;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4306,436,0 chrIV 259808 . A C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.37;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3250,334,0 chrIV 259889 . G T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.71;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3496,346,0 chrIV 259996 . A T 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=4.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.214;QD=21.41;ReadPosRankSum=1.666;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2281,231,0 chrIV 260003 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.09;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2384,249,0 chrIV 260036 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.06;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3232,319,0 chrIV 260056 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.393;HaplotypeScore=3.4452;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.611;QD=20.49;ReadPosRankSum=1.659;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2963,295,0 chrIV 260180 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.89;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3219,330,0 chrIV 260233 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=5.415;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.265;QD=24.32;ReadPosRankSum=2.874;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3697,379,0 chrIV 260728 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.9441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.437;QD=22.78;ReadPosRankSum=1.667;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2516,255,0 chrIV 260778 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=10.254;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.963;QD=23.95;ReadPosRankSum=2.873;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3267,328,0 chrIV 260870 . A C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=2.905;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.280;QD=23.91;ReadPosRankSum=2.409;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2950,303,0 chrIV 260902 . A C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=93;Dels=0.00;FS=9.007;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.446;QD=24.20;ReadPosRankSum=3.226;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:4,88:93:99:2284,234,0 chrIV 261002 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.734;QD=25.33;ReadPosRankSum=1.677;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3199,333,0 chrIV 261099 . A T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.02;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3513,352,0 chrIV 261140 . G C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.12;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3416,349,0 chrIV 261167 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.696;QD=24.15;ReadPosRankSum=1.678;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3124,319,0 chrIV 261197 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.14;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3251,334,0 chrIV 261254 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.2852;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.75;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2835,277,0 chrIV 261458 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3207,316,0 chrIV 261620 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.339;QD=25.15;ReadPosRankSum=1.634;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3572,361,0 chrIV 261828 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.89;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3559,364,0 chrIV 262117 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.84;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3134,322,0 chrIV 262380 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.1408;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=28.35;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4196,409,0 chrIV 262660 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=6.945;HaplotypeScore=10.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=25.22;ReadPosRankSum=2.360;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4162,430,0 chrIV 262793 . T C 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2944;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.537;QD=25.95;ReadPosRankSum=1.883;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:5423,565,0 chrIV 262975 . A G 4771.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.65;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4771,487,0 chrIV 263532 . T A 5643.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5643,571,0 chrIV 263773 . T A 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=2.935;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.601;QD=26.30;ReadPosRankSum=2.423;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4891,487,0 chrIV 264134 . C G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.06;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3633,370,0 chrIV 264197 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.13;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2521,261,0 chrIV 264290 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1562,156,0 chrIV 264370 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:36:63:620,63,0 chrIV 264432 . A T 2898 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2931,286,0 chrIV 265183 . A C 5005.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.41;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:5005,514,0 chrIV 265445 . G A 5982.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.11;SB=-3.635e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:5982,637,0 chrIV 265452 . T G 6485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.973;QD=20.33;ReadPosRankSum=1.666;SB=-3.906e+03 GT:AD:DP:GQ:PL 1/1:1,316:319:99:6485,670,0 chrIV 265591 . C A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.8144;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.98;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4346,474,0 chrIV 265606 . G T 4996.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.0302;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.73;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4996,499,0 chrIV 265841 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.1404;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.89;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3393,337,0 chrIV 266053 . G A 6380.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.5556;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.47;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6380,622,0 chrIV 266248 . G A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.06;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5525,562,0 chrIV 266302 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=5.124;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.718;QD=23.05;ReadPosRankSum=1.715;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4771,505,0 chrIV 266398 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.010;QD=21.97;ReadPosRankSum=1.684;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3197,325,0 chrIV 266407 . A T 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=6.349;HaplotypeScore=5.3188;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.833;QD=20.98;ReadPosRankSum=2.400;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3159,327,0 chrIV 266671 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=25.03;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3605,361,0 chrIV 266733 . A C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=2.725;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.099;QD=21.05;ReadPosRankSum=2.343;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3431,355,0 chrIV 266739 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.39;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3358,349,0 chrIV 266824 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=148;Dels=0.00;FS=2.951;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.446;QD=25.79;ReadPosRankSum=2.416;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3817,385,0 chrIV 266920 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.885;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.544;QD=25.58;ReadPosRankSum=1.707;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3504,355,0 chrIV 267359 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.72;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3575,358,0 chrIV 268132 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4276,433,0 chrIV 268432 . C T 5117.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.80;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:5117,532,0 chrIV 268701 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=137;Dels=0.00;FS=12.630;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.454;QD=23.60;ReadPosRankSum=3.369;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:3269,325,0 chrIV 268714 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=6.940;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.829;QD=23.61;ReadPosRankSum=2.413;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3220,325,0 chrIV 268735 . G T 2842 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.21;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2875,297,0 chrIV 268855 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=138;Dels=0.01;FS=6.246;HaplotypeScore=14.5514;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.211;QD=23.89;ReadPosRankSum=2.360;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3297,342,0 chrIV 268919 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=3.036;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.072;QD=26.26;ReadPosRankSum=2.397;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3702,376,0 chrIV 269089 . G C 3636.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3636,373,0 chrIV 269283 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.77;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4043,400,0 chrIV 269350 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.25;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3939,406,0 chrIV 269406 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3773,373,0 chrIV 269517 . G T 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=5.979;HaplotypeScore=8.6764;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.329;QD=22.81;ReadPosRankSum=-1.362;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2428,246,0 chrIV 269544 . T G 2766 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.64;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2799,282,0 chrIV 269772 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.73;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2966,303,0 chrIV 269891 . A G 2906 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.292;QD=23.06;ReadPosRankSum=1.677;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2939,301,0 chrIV 269895 . T C 3061 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=23.02;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3094,319,0 chrIV 269898 . A C 3030 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.28;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3063,315,0 chrIV 270080 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=26.00;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3023,307,0 chrIV 270285 . G A 5714.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=28.71;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:5714,559,0 chrIV 270349 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=162;Dels=0.00;FS=8.392;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.548;QD=24.35;ReadPosRankSum=3.383;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3945,403,0 chrIV 270858 . A C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.15;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3647,376,0 chrIV 270909 . C G 4154.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4154,424,0 chrIV 271629 . C G 5951.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.59;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,237:242:99:5951,607,0 chrIV 271787 . T G 6561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=287;Dels=0.00;FS=6.673;HaplotypeScore=19.8343;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.119;QD=22.86;ReadPosRankSum=2.424;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:2,282:287:99:6561,685,0 chrIV 272291 . A G 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=205;Dels=0.00;FS=2.925;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.812;QD=25.49;ReadPosRankSum=2.425;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:5226,541,0 chrIV 272385 . A C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.3223;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.435;QD=23.29;ReadPosRankSum=2.792;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3960,412,0 chrIV 272421 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.972;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.361;QD=23.78;ReadPosRankSum=2.417;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3639,373,0 chrIV 272848 . G T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3681,373,0 chrIV 272994 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.87;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3415,337,0 chrIV 273139 . C A 2130 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.48;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2163,216,0 chrIV 273171 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.57;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2441,240,0 chrIV 273273 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1766,174,0 chrIV 273339 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.12;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2394,252,0 chrIV 273764 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.09;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1280,129,0 chrIV 273848 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.64;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2886,297,0 chrIV 274589 . T C 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=229;Dels=0.00;FS=3.027;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.243;QD=23.07;ReadPosRankSum=2.406;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:5283,541,0 chrIV 274595 . G A 5203.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1810;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.44;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5203,517,0 chrIV 274672 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.668;QD=24.64;ReadPosRankSum=1.711;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4017,406,0 chrIV 274809 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=136;Dels=0.00;FS=5.123;HaplotypeScore=11.5685;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.895;QD=24.48;ReadPosRankSum=3.355;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:3329,340,0 chrIV 274930 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.299;QD=23.61;ReadPosRankSum=1.636;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1733,174,0 chrIV 275180 . A T 2408 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=27.06;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2441,240,0 chrIV 275205 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1726;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.79;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2269,231,0 chrIV 275289 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2666,261,0 chrIV 275448 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.974;QD=24.98;ReadPosRankSum=1.671;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4221,439,0 chrIV 275562 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.70;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4729,481,0 chrIV 275715 . C T 5840.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=24.96;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5840,571,0 chrIV 275730 . C T 5977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=232;Dels=0.00;FS=3.768;HaplotypeScore=4.9874;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.192;QD=25.76;ReadPosRankSum=-0.232;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5977,573,0 chrIV 276015 . A G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.232;DP=140;Dels=0.00;FS=5.166;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.976;QD=20.01;ReadPosRankSum=3.395;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:4,135:140:99:2834,297,0 chrIV 276017 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=4.614;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.076;QD=21.02;ReadPosRankSum=1.707;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2913,303,0 chrIV 276204 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=27.39;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4191,421,0 chrIV 276375 . T G 5417.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.4452;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.20;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5417,559,0 chrIV 277137 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.77;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4327,454,0 chrIV 277276 . C T 5968.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5968,592,0 chrIV 277603 . C T 7145.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=27.27;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:7145,691,0 chrIV 277642 . G A 7257.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=27.08;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:7257,710,0 chrIV 278622 . A G 5337.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.82;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:5337,538,0 chrIV 278671 . C T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=25.26;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4901,487,0 chrIV 278692 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.91;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4459,460,0 chrIV 278971 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.76;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2901,300,0 chrIV 279031 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=6.453;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.275;QD=22.78;ReadPosRankSum=2.402;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3576,364,0 chrIV 279583 . C A 3098 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3131,310,0 chrIV 279796 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.19;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:4106,409,0 chrIV 280191 . T C 2493 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2521;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.18;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2526,261,0 chrIV 280295 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.717;QD=18.19;ReadPosRankSum=2.396;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1688,174,0 chrIV 280298 . T A 1751 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.43;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1784,177,0 chrIV 280697 . C T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.03;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4605,466,0 chrIV 280802 . A T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.80;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3794,388,0 chrIV 280844 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.583;QD=22.46;ReadPosRankSum=1.711;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3684,385,0 chrIV 280847 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.15;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3632,361,0 chrIV 280976 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.74;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3058,315,0 chrIV 281045 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.89;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3679,379,0 chrIV 281207 . C T 2949 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=22.17;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2982,306,0 chrIV 281210 . C T 3103 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=23.33;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3136,321,0 chrIV 281213 . G A 3126 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=22.99;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3159,316,0 chrIV 281306 . C A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.31;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3986,415,0 chrIV 281327 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.53;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4071,421,0 chrIV 281392 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=159;Dels=0.00;FS=6.028;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.866;QD=20.19;ReadPosRankSum=2.917;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3243,333,0 chrIV 281405 . G C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.59;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3377,343,0 chrIV 281474 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.339;QD=23.99;ReadPosRankSum=1.695;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4438,457,0 chrIV 281643 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.79;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3902,382,0 chrIV 281647 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.33;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3639,367,0 chrIV 281966 . T A 2948 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.77;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2981,306,0 chrIV 282024 . T A 3103 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.7156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3136,310,0 chrIV 282129 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=25.56;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3578,367,0 chrIV 282145 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.22;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3237,336,0 chrIV 282713 . C T 7641.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=21.9942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.39;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:7641,766,0 chrIV 282844 . G A 7541.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.35;SB=-4.582e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7541,742,0 chrIV 282856 . A G 7169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=340;Dels=0.00;FS=2.974;HaplotypeScore=11.7892;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.265;QD=21.09;ReadPosRankSum=2.435;SB=-4.194e+03 GT:AD:DP:GQ:PL 1/1:2,337:340:99:7169,739,0 chrIV 283024 . G A 7313.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=28.5575;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.96;SB=-3.709e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:7313,718,0 chrIV 283730 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.54;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3860,397,0 chrIV 283742 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=166;Dels=0.00;FS=3.393;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.398;QD=23.82;ReadPosRankSum=-0.501;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3954,388,0 chrIV 283794 . A C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=6.293;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.379;QD=21.21;ReadPosRankSum=2.422;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3861,406,0 chrIV 283814 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.483;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.304;QD=20.74;ReadPosRankSum=1.711;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3443,349,0 chrIV 283830 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.330;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.793;QD=20.47;ReadPosRankSum=1.687;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3227,331,0 chrIV 283896 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.960;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.504;QD=23.55;ReadPosRankSum=2.414;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3273,334,0 chrIV 284171 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3329,337,0 chrIV 284746 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.00;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3429,340,0 chrIV 285234 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.20;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3301,325,0 chrIV 285457 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.15;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3124,316,0 chrIV 285472 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=25.57;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3657,358,0 chrIV 285505 . A G 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=3.324;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.309;QD=23.81;ReadPosRankSum=1.712;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,171:177:99:4215,433,0 chrIV 285562 . G A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.13;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5253,517,0 chrIV 285994 . A C 6302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=261;Dels=0.00;FS=6.174;HaplotypeScore=32.1171;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.290;QD=24.15;ReadPosRankSum=2.411;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:2,256:261:99:6302,661,0 chrIV 286258 . A G 5408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=225;Dels=0.00;FS=2.870;HaplotypeScore=11.0193;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.380;QD=24.04;ReadPosRankSum=2.406;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5408,550,0 chrIV 286630 . C T 4691.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6029;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.06;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4691,469,0 chrIV 287068 . G C 6396.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.76;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:6396,667,0 chrIV 287409 . T C 6249.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=19.0860;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.47;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,287:291:99:6249,649,0 chrIV 287439 . C T 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=243;Dels=0.00;FS=4.421;HaplotypeScore=11.8243;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.830;QD=23.37;ReadPosRankSum=1.325;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,237:243:99:5678,565,0 chrIV 287535 . T C 5225.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.3750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5225,541,0 chrIV 287634 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.8677;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.635;QD=22.70;ReadPosRankSum=-0.130;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4904,517,0 chrIV 288063 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8101;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.34;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4382,460,0 chrIV 288140 . G T 6043.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.1756;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.27;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:6043,598,0 chrIV 288549 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.3853;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.68;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4221,418,0 chrIV 288597 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.14;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4224,427,0 chrIV 288667 . T G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.460;DP=160;Dels=0.00;FS=3.294;HaplotypeScore=8.9781;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.636;QD=25.62;ReadPosRankSum=1.666;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:4099,401,0 chrIV 288760 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5513;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.13;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4338,436,0 chrIV 288918 . C T 4690.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.68;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4690,457,0 chrIV 288945 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.6102;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.92;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4607,457,0 chrIV 289365 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.08;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3371,331,0 chrIV 289515 . T A 2541 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.75;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2574,264,0 chrIV 289631 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.080;QD=25.73;ReadPosRankSum=2.404;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2863,291,0 chrIV 289917 . A T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=26.80;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3403,337,0 chrIV 290077 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.69;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4312,445,0 chrIV 290079 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=23.47;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4342,448,0 chrIV 290096 . A G 4431.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.72;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4431,451,0 chrIV 290715 . G C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.34;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,172:178:99:3976,406,0 chrIV 291018 . T C 5024.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.76;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5024,520,0 chrIV 291204 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.308;QD=24.52;ReadPosRankSum=1.713;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4414,454,0 chrIV 291309 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.88;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3508,343,0 chrIV 291351 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.91;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3586,352,0 chrIV 291503 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9580;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.70;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3631,379,0 chrIV 291531 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.85;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3901,388,0 chrIV 291726 . T A 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=166;Dels=0.00;FS=13.530;HaplotypeScore=16.3722;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.795;QD=24.07;ReadPosRankSum=3.291;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3995,403,0 chrIV 292011 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.45;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3471,346,0 chrIV 292017 . T G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.929;QD=21.10;ReadPosRankSum=1.709;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3240,334,0 chrIV 292402 . A G 2828 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=25.03;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2861,294,0 chrIV 292428 . A G 2924 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=25.43;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2957,300,0 chrIV 292499 . G A 1498 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=14.40;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1531,159,0 chrIV 292500 . G A 1540 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=14.95;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1573,156,0 chrIV 292505 . T G 1348 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=12.96;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1381,141,0 chrIV 292517 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=12.30;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1337,135,0 chrIV 292555 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.210;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=-0.296;QD=12.02;ReadPosRankSum=1.701;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1379,138,0 chrIV 292574 . T A 1015 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=9.14;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1048,102,0 chrIV 292582 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.988;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=1.840;QD=9.46;ReadPosRankSum=2.405;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1064,108,0 chrIV 292597 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=12.99;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1527,153,0 chrIV 292605 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=12.57;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1592,162,0 chrIV 292611 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=12.95;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1652,171,0 chrIV 292625 . T G 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;MQRankSum=-1.629;QD=13.93;ReadPosRankSum=1.706;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1900,198,0 chrIV 292644 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=17.00;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2515,252,0 chrIV 292751 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.712;HaplotypeScore=6.0649;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=0.414;QD=26.31;ReadPosRankSum=1.706;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3525,361,0 chrIV 292776 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9801;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=25.26;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3360,340,0 chrIV 293191 . A T 2580 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.54;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2613,276,0 chrIV 294427 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.410;QD=22.14;ReadPosRankSum=1.612;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3853,388,0 chrIV 294517 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1697;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.70;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4026,415,0 chrIV 295157 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=118;Dels=0.00;FS=7.435;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.515;QD=23.81;ReadPosRankSum=2.366;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2842,306,0 chrIV 295338 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=167;Dels=0.00;FS=5.785;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.230;QD=26.02;ReadPosRankSum=2.946;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:4345,439,0 chrIV 295469 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.116;QD=23.79;ReadPosRankSum=1.711;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3926,412,0 chrIV 295928 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=189;Dels=0.00;FS=6.089;HaplotypeScore=14.2306;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.027;QD=24.89;ReadPosRankSum=2.888;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:4705,484,0 chrIV 296009 . C T 6109.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.3705;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.35;SB=-3.551e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:6109,598,0 chrIV 296063 . G A 5079.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.1101;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.54;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:5079,505,0 chrIV 296527 . A G 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=195;Dels=0.00;FS=3.016;HaplotypeScore=17.8436;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.057;QD=24.27;ReadPosRankSum=2.386;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4733,496,0 chrIV 296567 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.630;QD=25.09;ReadPosRankSum=1.691;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4291,442,0 chrIV 296793 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.42;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3931,400,0 chrIV 296817 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=143;Dels=0.00;FS=9.409;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.550;QD=22.43;ReadPosRankSum=2.679;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3241,336,0 chrIV 297184 . A G 2513 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.13;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2546,258,0 chrIV 297638 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.730;QD=26.18;ReadPosRankSum=1.667;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4163,424,0 chrIV 297848 . A G 4493.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.2342;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.12;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4493,460,0 chrIV 297971 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.88;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3304,342,0 chrIV 297975 . C A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.59;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3502,349,0 chrIV 298099 . A T 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.1352;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.224;QD=25.14;ReadPosRankSum=1.709;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3771,382,0 chrIV 298148 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.01;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3209,330,0 chrIV 298304 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=116.4088;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=26.03;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3540,343,0 chrIV 298347 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=14.0401;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.231;QD=21.45;ReadPosRankSum=2.413;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2886,294,0 chrIV 298579 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.57;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4595,469,0 chrIV 298871 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3309,331,0 chrIV 299200 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3160,327,0 chrIV 299385 . T A 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=25.93;ReadPosRankSum=1.706;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3475,346,0 chrIV 299599 . C T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.40;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4521,451,0 chrIV 299792 . G A 6957.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.2448;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.35;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6957,694,0 chrIV 300204 . A T 2716 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.08;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2749,273,0 chrIV 300254 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.50;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4743,478,0 chrIV 300487 . T C 6608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=272;Dels=0.00;FS=8.259;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.495;QD=24.29;ReadPosRankSum=3.390;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:4,266:272:99:6608,685,0 chrIV 300521 . C G 7036.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.8285;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.87;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:7036,709,0 chrIV 300736 . T C 5595.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=23.6354;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.01;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5595,577,0 chrIV 300807 . G A 6793.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=25.25;SB=-3.713e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6793,670,0 chrIV 300814 . C T 6587.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=24.67;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6587,652,0 chrIV 300880 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.8314;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=26.16;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4813,469,0 chrIV 301033 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.06;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3571,375,0 chrIV 301039 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.39;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3761,382,0 chrIV 301199 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=165;Dels=0.00;FS=12.595;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.810;QD=22.73;ReadPosRankSum=2.896;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3750,385,0 chrIV 301246 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.77;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3666,376,0 chrIV 301279 . C A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.99;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3471,346,0 chrIV 301751 . T C 6241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=293;Dels=0.00;FS=10.112;HaplotypeScore=25.4461;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.609;QD=21.30;ReadPosRankSum=2.969;SB=-3.707e+03 GT:AD:DP:GQ:PL 1/1:3,288:293:99:6241,640,0 chrIV 301845 . G A 5312.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=22.9441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.59;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5312,520,0 chrIV 302207 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.84;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2414,255,0 chrIV 302250 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.12;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2779,303,0 chrIV 302259 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.01;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2575,270,0 chrIV 302423 . C A 2753 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8069;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=27.26;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2786,277,0 chrIV 302581 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.94;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4065,409,0 chrIV 302711 . G T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.99;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3563,352,0 chrIV 302719 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.925;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.359;QD=20.95;ReadPosRankSum=1.710;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3310,334,0 chrIV 302749 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.34;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3574,367,0 chrIV 302868 . G T 2738 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.89;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2771,274,0 chrIV 302927 . C A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.92;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3396,337,0 chrIV 303051 . C A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.52;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3513,346,0 chrIV 303361 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=179;Dels=0.00;FS=2.968;HaplotypeScore=15.7942;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.007;QD=22.98;ReadPosRankSum=2.394;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4113,415,0 chrIV 303429 . C T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.85;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4265,415,0 chrIV 303471 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3622,373,0 chrIV 304248 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.80;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4902,514,0 chrIV 304677 . C T 5383.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.63;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5383,535,0 chrIV 305375 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=7.694;HaplotypeScore=21.9189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.706;QD=21.91;ReadPosRankSum=2.344;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4119,427,0 chrIV 305599 . G T 5918.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5918,583,0 chrIV 305680 . C T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.2284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4743,472,0 chrIV 306714 . A T 1497 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=27.72;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1530,147,0 chrIV 307387 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.780;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.379;QD=25.07;ReadPosRankSum=2.394;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3359,343,0 chrIV 307571 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3162,324,0 chrIV 307685 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.96;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2953,292,0 chrIV 307984 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=137;Dels=0.00;FS=6.383;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.137;QD=24.19;ReadPosRankSum=2.340;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:3314,340,0 chrIV 308096 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.9243;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.59;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3680,382,0 chrIV 308170 . A G 2608 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=5.7180;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=22.10;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2641,267,0 chrIV 308173 . C T 1225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=115;Dels=0.00;FS=2.156;HaplotypeScore=6.0497;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=1.345;QD=10.65;ReadPosRankSum=2.850;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:1258,164,0 chrIV 308174 . T C 1230 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=114;Dels=0.00;FS=4.543;HaplotypeScore=6.0497;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=1.578;QD=10.79;ReadPosRankSum=3.088;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:99:1263,164,0 chrIV 308238 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.308;QD=20.65;ReadPosRankSum=1.667;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2243,228,0 chrIV 308241 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=20.97;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2193,228,0 chrIV 308457 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.75;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2659,259,0 chrIV 308552 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.58;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3026,312,0 chrIV 308657 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.92;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2397,252,0 chrIV 308658 . T G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.078;QD=20.20;ReadPosRankSum=1.607;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2316,249,0 chrIV 308700 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.79;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2237,219,0 chrIV 308773 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9768;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.20;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3276,342,0 chrIV 308968 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.98;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3797,376,0 chrIV 309554 . G T 1284 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=26.20;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1317,135,0 chrIV 309607 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=87.9751;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=18.07;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:774,81,0 chrIV 309630 . G A 766 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.15;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:799,78,0 chrIV 309716 . T A 1337 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1370,138,0 chrIV 310132 . T C 2465 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.17;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2498,252,0 chrIV 310329 . A T 1955 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.84;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1988,204,0 chrIV 310698 . T C 2512 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=25.37;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2545,264,0 chrIV 311231 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1885;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.03;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4581,466,0 chrIV 311386 . A G 4901.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.93;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4901,505,0 chrIV 311442 . T G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.094;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.620;QD=24.45;ReadPosRankSum=1.642;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3790,396,0 chrIV 311602 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.7579;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.32;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3922,394,0 chrIV 312250 . T C 6639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=276;Dels=0.00;FS=7.275;HaplotypeScore=19.3723;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.835;QD=24.05;ReadPosRankSum=2.422;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:2,270:276:99:6639,673,0 chrIV 312431 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3313,351,0 chrIV 312488 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.02;FS=0.000;HaplotypeScore=17.3398;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.11;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3050,307,0 chrIV 313108 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4762,466,0 chrIV 318487 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.47;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3450,360,0 chrIV 320548 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=3.052;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.387;QD=24.44;ReadPosRankSum=2.379;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2624,264,0 chrIV 321142 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.62;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2914,300,0 chrIV 322355 . A T 2742 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2775,279,0 chrIV 322456 . A G 2431 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2464,255,0 chrIV 324892 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.74;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3489,343,0 chrIV 325079 . C A 2852 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.8297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.00;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2885,297,0 chrIV 325302 . T C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.696;QD=21.62;ReadPosRankSum=1.643;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2563,258,0 chrIV 326189 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3004,295,0 chrIV 326534 . A C 5306.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.66;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5306,547,0 chrIV 327052 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4002,397,0 chrIV 327242 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2181,213,0 chrIV 327540 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2489,246,0 chrIV 328073 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=4.455;HaplotypeScore=13.4380;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.359;QD=25.13;ReadPosRankSum=1.667;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2722,279,0 chrIV 328685 . T A 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=6.126;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.561;QD=26.38;ReadPosRankSum=2.371;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3297,328,0 chrIV 328957 . A C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.838;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.202;QD=25.62;ReadPosRankSum=2.373;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3305,334,0 chrIV 328992 . A T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4355;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.15;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3687,367,0 chrIV 330288 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.2118;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.53;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5386,556,0 chrIV 331087 . G A 5599.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.0215;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.83;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5599,609,0 chrIV 332527 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3571,370,0 chrIV 332804 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1669,165,0 chrIV 334393 . T C 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=192;Dels=0.00;FS=6.053;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.539;QD=27.14;ReadPosRankSum=2.932;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:5211,532,0 chrIV 336884 . C G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.67;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4107,412,0 chrIV 336922 . C G 4010.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=25.06;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4010,406,0 chrIV 336943 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=161;Dels=0.00;FS=9.529;HaplotypeScore=8.1414;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.044;QD=22.71;ReadPosRankSum=2.906;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3656,384,0 chrIV 339004 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=197;Dels=0.00;FS=5.952;HaplotypeScore=17.5034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.015;QD=23.94;ReadPosRankSum=2.862;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4717,487,0 chrIV 339210 . G T 5347.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.6637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5347,538,0 chrIV 339391 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=2.918;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.008;QD=24.23;ReadPosRankSum=2.417;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3611,373,0 chrIV 339508 . C A 3068 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3101,313,0 chrIV 341953 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3590,358,0 chrIV 346451 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=6.551;HaplotypeScore=11.4309;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.198;QD=24.47;ReadPosRankSum=2.373;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3940,412,0 chrIV 346745 . G A 5720.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.1603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5720,556,0 chrIV 353410 . T C 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=176;Dels=0.00;FS=8.005;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.540;QD=25.02;ReadPosRankSum=3.802;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:5,169:176:99:4404,457,0 chrIV 353682 . T G 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.356;QD=24.99;ReadPosRankSum=1.657;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4699,466,0 chrIV 355411 . C A 1570 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.61;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1603,162,0 chrIV 355467 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.73;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1172,123,0 chrIV 355569 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.464;QD=25.86;ReadPosRankSum=2.386;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:2050,207,0 chrIV 358299 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.5642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.17;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3459,352,0 chrIV 361379 . T A 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=5.002;HaplotypeScore=17.0348;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.619;QD=25.90;ReadPosRankSum=1.696;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:5024,505,0 chrIV 361672 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=27.79;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:3006,295,0 chrIV 361711 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=2.592;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.589;QD=26.81;ReadPosRankSum=2.286;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2446,249,0 chrIV 361844 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=151;Dels=0.00;FS=6.108;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.193;QD=24.19;ReadPosRankSum=2.914;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3652,379,0 chrIV 361942 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=183;Dels=0.00;FS=8.673;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.703;QD=25.43;ReadPosRankSum=2.422;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4653,481,0 chrIV 362834 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3993,420,0 chrIV 362993 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=171;Dels=0.00;FS=5.816;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.316;QD=25.71;ReadPosRankSum=2.923;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:4396,451,0 chrIV 363194 . C A 5562.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.1376;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.63;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5562,559,0 chrIV 363511 . A G 5729.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.7082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5729,580,0 chrIV 363624 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.762;QD=23.15;ReadPosRankSum=1.697;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4653,478,0 chrIV 364908 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.95;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1328,138,0 chrIV 365317 . T C 6578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=269;Dels=0.00;FS=3.026;HaplotypeScore=17.5121;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.262;QD=24.45;ReadPosRankSum=2.431;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:2,265:269:99:6578,661,0 chrIV 366354 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.81;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3846,379,0 chrIV 366464 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.22;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3237,339,0 chrIV 366543 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.13;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2865,289,0 chrIV 366862 . C T 4330.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.74;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4330,436,0 chrIV 366968 . C A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5019,523,0 chrIV 367213 . T C 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=243;Dels=0.00;FS=2.947;HaplotypeScore=17.4147;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.321;QD=22.60;ReadPosRankSum=2.419;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:2,239:243:99:5491,556,0 chrIV 367564 . G C 6322.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=23.6238;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.86;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,260:265:99:6322,664,0 chrIV 367618 . G A 7699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=20.6176;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.698;QD=25.41;ReadPosRankSum=1.663;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:7699,766,0 chrIV 367885 . G A 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=244;Dels=0.00;FS=3.174;HaplotypeScore=5.8914;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.463;QD=21.95;ReadPosRankSum=1.433;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5355,550,0 chrIV 367887 . A T 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.734;DP=247;Dels=0.00;FS=15.865;HaplotypeScore=7.2771;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.983;QD=21.70;ReadPosRankSum=3.715;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:5,242:247:99:5360,559,0 chrIV 368038 . G A 6027.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.09;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6027,631,0 chrIV 368052 . G A 5358.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.40;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5358,526,0 chrIV 368078 . G C 3752.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.5698;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=18.76;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:3752,385,0 chrIV 368207 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.970;QD=24.19;ReadPosRankSum=2.911;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4088,427,0 chrIV 368337 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.01;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1882,195,0 chrIV 368345 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.02;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1755,174,0 chrIV 368534 . T A 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=13.7108;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.388;QD=23.72;ReadPosRankSum=2.336;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3140,310,0 chrIV 368620 . G C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=27.31;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3906,403,0 chrIV 368735 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.27;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3117,310,0 chrIV 369340 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=28.35;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2386,237,0 chrIV 369366 . C A 2578 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=27.14;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2611,256,0 chrIV 369403 . G C 1366 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.02;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1399,144,0 chrIV 369534 . G C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.95;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3814,385,0 chrIV 369744 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=147;Dels=0.00;FS=6.111;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.110;QD=22.78;ReadPosRankSum=2.399;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3349,343,0 chrIV 369971 . G T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4176,418,0 chrIV 370148 . C T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6613;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.54;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:5123,514,0 chrIV 370499 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.10;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4604,454,0 chrIV 370634 . G C 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.87;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2778,291,0 chrIV 370771 . A G 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.155;QD=20.89;ReadPosRankSum=1.668;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1161,117,0 chrIV 370914 . T C 434 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.50;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:48:467,48,0 chrIV 370948 . C T 272 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=18.13;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:305,30,0 chrIV 370968 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 371085 . T C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.498;QD=24.81;ReadPosRankSum=2.291;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1571,162,0 chrIV 371142 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.770;QD=26.79;ReadPosRankSum=0.770;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1989,185,0 chrIV 371204 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-1.241;QD=20.65;ReadPosRankSum=2.407;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2428,252,0 chrIV 371211 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.350;QD=19.39;ReadPosRankSum=1.705;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2496,258,0 chrIV 371249 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=18.31;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2761,288,0 chrIV 371263 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=4.630;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=-0.608;QD=15.44;ReadPosRankSum=1.709;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:2411,252,0 chrIV 371266 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=15.53;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2455,249,0 chrIV 371308 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.2107;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.77;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3301,348,0 chrIV 371437 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.04;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4833,478,0 chrIV 371461 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=180;Dels=0.00;FS=7.707;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.173;QD=21.58;ReadPosRankSum=2.381;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3885,406,0 chrIV 371620 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.5015;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.54;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4442,451,0 chrIV 371665 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.829;QD=25.12;ReadPosRankSum=1.690;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4144,427,0 chrIV 371744 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.208;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.674;QD=24.92;ReadPosRankSum=1.694;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4510,472,0 chrIV 371854 . G T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.1555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.75;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4298,424,0 chrIV 371907 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.9792;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.25;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3338,328,0 chrIV 372110 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2704,271,0 chrIV 372564 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=24.99;ReadPosRankSum=1.656;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3449,352,0 chrIV 373723 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3225,331,0 chrIV 375394 . A C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.436;QD=25.06;ReadPosRankSum=1.607;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3508,366,0 chrIV 380252 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.080;QD=25.14;ReadPosRankSum=1.679;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4953,499,0 chrIV 381770 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2261,222,0 chrIV 383065 . G A 5723.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.46;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5723,598,0 chrIV 383227 . C T 6304.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=24.82;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6304,631,0 chrIV 383229 . C T 6320.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=24.50;SB=-3.590e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6320,625,0 chrIV 383365 . T A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;DP=486;Dels=0.00;FS=17.570;HaplotypeScore=300.5595;MLEAC=1;MLEAF=0.500;MQ=47.60;MQ0=2;MQRankSum=-8.847;QD=0.48;ReadPosRankSum=-7.146;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:376,110:486:99:262,0,6003 chrIV 383681 . G T 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.896;DP=307;Dels=0.00;FS=98.890;HaplotypeScore=10.0775;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-10.620;QD=0.43;ReadPosRankSum=-6.044;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,51:307:99:163,0,5575 chrIV 383690 . A G 390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DP=322;Dels=0.00;FS=131.447;HaplotypeScore=13.2981;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-11.543;QD=1.21;ReadPosRankSum=-3.750;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,67:322:99:420,0,5662 chrIV 383704 . C T 520.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.668;DP=315;Dels=0.00;FS=137.401;HaplotypeScore=23.7867;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-11.292;QD=1.65;ReadPosRankSum=0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,78:315:99:550,0,5368 chrIV 383713 . G A 485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.591;DP=312;Dels=0.00;FS=174.146;HaplotypeScore=22.8508;MLEAC=1;MLEAF=0.500;MQ=49.32;MQ0=0;MQRankSum=-11.128;QD=1.55;ReadPosRankSum=4.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,76:312:99:515,0,5438 chrIV 383719 . C G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DP=303;Dels=0.00;FS=159.741;HaplotypeScore=20.6489;MLEAC=1;MLEAF=0.500;MQ=49.16;MQ0=0;MQRankSum=-10.761;QD=0.19;ReadPosRankSum=5.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,68:303:87:87,0,5440 chrIV 383729 . A C 316.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.847;DP=287;Dels=0.00;FS=166.339;HaplotypeScore=17.4921;MLEAC=1;MLEAF=0.500;MQ=47.40;MQ0=0;MQRankSum=-9.805;QD=1.10;ReadPosRankSum=-0.632;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,68:287:99:346,0,5330 chrIV 383732 . T C 355.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.223;DP=292;Dels=0.00;FS=175.560;HaplotypeScore=20.4397;MLEAC=1;MLEAF=0.500;MQ=47.04;MQ0=0;MQRankSum=-10.269;QD=1.22;ReadPosRankSum=-1.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,68:292:99:385,0,5341 chrIV 383735 . A G 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;DP=295;Dels=0.00;FS=180.138;HaplotypeScore=18.8077;MLEAC=1;MLEAF=0.500;MQ=46.69;MQ0=0;MQRankSum=-9.259;QD=1.13;ReadPosRankSum=-2.257;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,68:295:99:363,0,5036 chrIV 383738 . C T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.193;DP=291;Dels=0.00;FS=169.589;HaplotypeScore=20.5697;MLEAC=1;MLEAF=0.500;MQ=46.18;MQ0=0;MQRankSum=-10.209;QD=0.33;ReadPosRankSum=-4.107;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,69:291:99:127,0,5123 chrIV 383739 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;DP=291;Dels=0.00;FS=181.349;HaplotypeScore=18.2037;MLEAC=1;MLEAF=0.500;MQ=46.18;MQ0=0;MQRankSum=-9.308;QD=0.19;ReadPosRankSum=-4.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,68:291:86:86,0,5411 chrIV 383740 . T A 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DP=294;Dels=0.00;FS=184.788;HaplotypeScore=19.8358;MLEAC=1;MLEAF=0.500;MQ=45.95;MQ0=0;MQRankSum=-8.777;QD=0.54;ReadPosRankSum=-4.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,69:294:99:190,0,5310 chrIV 383742 . T C 324.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.377;DP=291;Dels=0.00;FS=191.329;HaplotypeScore=19.1453;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=-8.556;QD=1.11;ReadPosRankSum=-6.517;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,68:291:99:354,0,5345 chrIV 383938 . G A 2947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.672;DP=596;Dels=0.00;FS=14.666;HaplotypeScore=414.6959;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=5;MQRankSum=3.325;QD=4.94;ReadPosRankSum=1.588;SB=-2.622e+03 GT:AD:DP:GQ:PL 0/1:293,298:595:99:2977,0,701 chrIV 383957 . G C 2107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;DP=700;Dels=0.01;FS=28.094;HaplotypeScore=827.3454;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=5;MQRankSum=5.190;QD=3.01;ReadPosRankSum=-2.130;SB=-2.958e+03 GT:AD:DP:GQ:PL 0/1:366,327:695:99:2137,0,1981 chrIV 383965 . G A 1905.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.721;DP=666;Dels=0.01;FS=21.742;HaplotypeScore=361.7952;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=5;MQRankSum=4.990;QD=2.86;ReadPosRankSum=1.383;SB=-2.776e+03 GT:AD:DP:GQ:PL 0/1:342,318:661:99:1935,0,2500 chrIV 383968 . T G 1647.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.428;DP=655;Dels=0.02;FS=131.914;HaplotypeScore=402.2169;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=5;MQRankSum=4.793;QD=2.51;ReadPosRankSum=1.113;SB=-2.599e+03 GT:AD:DP:GQ:PL 0/1:300,232:644:99:1677,0,2652 chrIV 383985 . T C 659.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.579;DP=584;Dels=0.01;FS=177.676;HaplotypeScore=170.1402;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=5;MQRankSum=4.119;QD=1.13;ReadPosRankSum=2.043;SB=-1.176e+03 GT:AD:DP:GQ:PL 0/1:412,167:579:99:689,0,4051 chrIV 383986 . A T 634.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.725;DP=585;Dels=0.01;FS=128.668;HaplotypeScore=167.7143;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=5;MQRankSum=5.711;QD=1.08;ReadPosRankSum=0.637;SB=-1.262e+03 GT:AD:DP:GQ:PL 0/1:422,158:580:99:664,0,3940 chrIV 383989 . A G 655.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.233;DP=601;Dels=0.01;FS=144.565;HaplotypeScore=239.5544;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=5;MQRankSum=6.426;QD=1.09;ReadPosRankSum=-1.895;SB=-1.134e+03 GT:AD:DP:GQ:PL 0/1:416,158:596:99:685,0,4346 chrIV 384001 . G A 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;DP=561;Dels=0.00;FS=22.132;HaplotypeScore=538.9748;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=5;MQRankSum=2.959;QD=0.86;ReadPosRankSum=-5.361;SB=-1.415e+03 GT:AD:DP:GQ:PL 0/1:334,223:561:99:512,0,5556 chrIV 384005 . A G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.771;DP=576;Dels=0.00;FS=28.849;HaplotypeScore=572.9630;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=3;MQRankSum=5.603;QD=0.02;ReadPosRankSum=-11.432;SB=-8.650e+02 GT:AD:DP:GQ:PL 0/1:448,125:576:40:40,0,6494 chrIV 384021 . C T 1483.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DP=545;Dels=0.00;FS=176.271;HaplotypeScore=245.9542;MLEAC=1;MLEAF=0.500;MQ=29.50;MQ0=5;MQRankSum=4.530;QD=2.72;ReadPosRankSum=-1.416;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:409,135:545:99:1513,0,5922 chrIV 384035 . A G 1390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DP=620;Dels=0.00;FS=62.343;HaplotypeScore=102.2339;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=5;MQRankSum=1.603;QD=2.24;ReadPosRankSum=-4.504;SB=-1.040e+03 GT:AD:DP:GQ:PL 0/1:404,210:620:99:1420,0,8556 chrIV 384094 . T A 12547.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150;DP=965;Dels=0.00;FS=2.429;HaplotypeScore=58.7559;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=5;MQRankSum=4.741;QD=13.00;ReadPosRankSum=0.941;SB=-6.157e+03 GT:AD:DP:GQ:PL 0/1:297,668:965:99:12547,0,5374 chrIV 384189 . G A 3162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DP=439;Dels=0.00;FS=14.544;HaplotypeScore=40.3651;MLEAC=1;MLEAF=0.500;MQ=38.87;MQ0=0;MQRankSum=-10.855;QD=7.20;ReadPosRankSum=-2.802;SB=-2.067e+03 GT:AD:DP:GQ:PL 0/1:219,219:439:99:3192,0,4460 chrIV 384191 . C G 9539.01 filter AC=2;AF=1.00;AN=2;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=37.0033;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=22.18;SB=-5.543e+03 GT:AD:DP:GQ:PL 1/1:0,428:430:99:9539,997,0 chrIV 384204 . C T 2808.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.214;DP=391;Dels=0.00;FS=40.125;HaplotypeScore=40.5356;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=0;MQRankSum=-10.736;QD=7.18;ReadPosRankSum=-5.662;SB=-1.102e+03 GT:AD:DP:GQ:PL 0/1:219,172:391:99:2838,0,4576 chrIV 384219 . C T 1248.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DP=345;Dels=0.00;FS=57.698;HaplotypeScore=122.7964;MLEAC=1;MLEAF=0.500;MQ=42.75;MQ0=0;MQRankSum=-8.021;QD=3.62;ReadPosRankSum=-9.033;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:247,98:345:99:1278,0,4813 chrIV 384225 . G A 955.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.485;DP=328;Dels=0.00;FS=179.355;HaplotypeScore=143.3168;MLEAC=1;MLEAF=0.500;MQ=43.94;MQ0=0;MQRankSum=-9.434;QD=2.91;ReadPosRankSum=-11.761;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,93:328:99:985,0,4877 chrIV 384257 . T C 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=307;Dels=0.00;FS=4.161;HaplotypeScore=17.2797;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;MQRankSum=-0.221;QD=18.36;ReadPosRankSum=1.721;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:1,304:307:99:5635,574,0 chrIV 384317 . C G 654.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DP=456;Dels=0.00;FS=256.847;HaplotypeScore=384.3922;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=0;MQRankSum=-16.378;QD=1.43;ReadPosRankSum=-9.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,183:456:99:684,0,5306 chrIV 384325 . G A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.828;DP=471;Dels=0.00;FS=229.549;HaplotypeScore=504.4439;MLEAC=1;MLEAF=0.500;MQ=46.16;MQ0=0;MQRankSum=-12.439;QD=0.08;ReadPosRankSum=-4.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:309,118:471:69:69,0,6309 chrIV 384335 . G C 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;DP=508;Dels=0.00;FS=285.457;HaplotypeScore=437.9946;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=0;MQRankSum=-13.513;QD=0.66;ReadPosRankSum=-1.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:320,142:508:99:367,0,6483 chrIV 384352 . A G 436.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.756;DP=540;Dels=0.00;FS=245.904;HaplotypeScore=231.3405;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=-11.842;QD=0.81;ReadPosRankSum=-3.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:354,150:540:99:466,0,6972 chrIV 384370 . G A 701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.207;DP=489;Dels=0.00;FS=331.060;HaplotypeScore=521.8725;MLEAC=1;MLEAF=0.500;MQ=47.30;MQ0=0;MQRankSum=-14.954;QD=1.43;ReadPosRankSum=-3.020;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,170:489:99:731,0,6637 chrIV 384389 . G C 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.868;DP=390;Dels=0.00;FS=152.543;HaplotypeScore=129.0823;MLEAC=1;MLEAF=0.500;MQ=50.01;MQ0=0;MQRankSum=-11.044;QD=1.17;ReadPosRankSum=-4.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:309,78:390:99:485,0,6285 chrIV 385473 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4130,421,0 chrIV 385750 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=10.868;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.300;QD=21.89;ReadPosRankSum=2.355;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3437,355,0 chrIV 385961 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.9608;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=17.76;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1685,180,0 chrIV 385972 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.04;FS=0.000;HaplotypeScore=13.2949;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=15.73;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1543,159,0 chrIV 386094 . T A 1817 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=17.64;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1850,186,0 chrIV 386657 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2397,234,0 chrIV 386785 . T C 2192 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2225,228,0 chrIV 388147 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.0104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.658;QD=21.89;ReadPosRankSum=1.634;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3120,313,0 chrIV 388221 . G T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3327;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.44;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4553,469,0 chrIV 388305 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.47;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3401,357,0 chrIV 388440 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=152;Dels=0.00;FS=2.793;HaplotypeScore=10.6081;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.663;QD=20.01;ReadPosRankSum=2.400;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3074,318,0 chrIV 389086 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=4.736;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.540;QD=26.28;ReadPosRankSum=1.675;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3239,322,0 chrIV 391149 . G C 2222 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.67;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2255,234,0 chrIV 391712 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:4002,412,0 chrIV 392128 . C G 1648 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8873;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=11.94;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:1681,180,0 chrIV 395767 . A T 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=145;Dels=0.00;FS=5.607;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.882;QD=23.81;ReadPosRankSum=2.896;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3452,343,0 chrIV 395873 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=3.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.202;QD=25.22;ReadPosRankSum=2.415;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3581,364,0 chrIV 396610 . C A 2317 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.91;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2350,234,0 chrIV 397927 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2115,216,0 chrIV 398523 . T G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=120;Dels=0.00;FS=2.806;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.053;QD=24.25;ReadPosRankSum=2.387;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2943,303,0 chrIV 400864 . A G 188.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-8.677e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:221,24,0 chrIV 402371 . A G 2703 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.91;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2736,288,0 chrIV 404459 . A T 3093 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.74;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3126,315,0 chrIV 405368 . T G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.818;QD=25.61;ReadPosRankSum=1.677;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3234,328,0 chrIV 406099 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3942,388,0 chrIV 407064 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3128,310,0 chrIV 408416 . T A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.4656;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.94;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3541,346,0 chrIV 410315 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2515,261,0 chrIV 414063 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2008,201,0 chrIV 414546 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.07;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3242,333,0 chrIV 415090 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.560;QD=26.59;ReadPosRankSum=1.681;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1841,192,0 chrIV 415430 . T C 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=216;Dels=0.00;FS=3.851;HaplotypeScore=11.4063;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.225;QD=24.17;ReadPosRankSum=1.668;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5221,544,0 chrIV 416036 . C G 5367.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.75;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5367,556,0 chrIV 416488 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8615;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.95;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4814,478,0 chrIV 417897 . A G 6648.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.1184;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.71;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6648,667,0 chrIV 418662 . T C 5362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.2531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.599;QD=25.29;ReadPosRankSum=1.650;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5362,550,0 chrIV 418963 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3467,337,0 chrIV 424905 . C A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2898;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.00;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4300,445,0 chrIV 425858 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8587;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=28.26;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3758,379,0 chrIV 425975 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.37;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3323,340,0 chrIV 426326 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.75;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3372,348,0 chrIV 426781 . A T 3034 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.0608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3067,304,0 chrIV 426944 . A G 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.800;QD=22.81;ReadPosRankSum=1.532;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1219,126,0 chrIV 427330 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.27;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4042,403,0 chrIV 428020 . A C 5118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=214;Dels=0.00;FS=8.095;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.233;QD=23.92;ReadPosRankSum=1.863;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:5118,532,0 chrIV 428861 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3252,336,0 chrIV 429695 . C T 5949.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5949,595,0 chrIV 431267 . T C 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=210;Dels=0.00;FS=5.234;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.288;QD=24.26;ReadPosRankSum=3.402;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:4,205:210:99:5094,529,0 chrIV 431674 . G C 4367.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.02;FS=0.000;HaplotypeScore=17.9302;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.11;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4367,445,0 chrIV 431960 . G A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=26.60;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4894,490,0 chrIV 432174 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.536;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.0868;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.969;QD=22.54;ReadPosRankSum=-0.675;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4012,400,0 chrIV 432463 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=26.22;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2891,280,0 chrIV 432487 . G C 2866 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2260;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.39;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2899,306,0 chrIV 432606 . T A 2721 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.66;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2754,276,0 chrIV 433099 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.10;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1211,123,0 chrIV 433160 . A C 2309 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=27.16;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2342,234,0 chrIV 433257 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.51;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2263,234,0 chrIV 433297 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.27;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3141,307,0 chrIV 433376 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.56;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2060,204,0 chrIV 433396 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.99;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1796,186,0 chrIV 433401 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.21;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2163,213,0 chrIV 433591 . T A 7595.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3647;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=26.56;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7595,734,0 chrIV 433703 . T C 6439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=259;Dels=0.00;FS=7.202;HaplotypeScore=17.7967;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.289;QD=24.86;ReadPosRankSum=2.430;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:2,254:259:99:6439,646,0 chrIV 434124 . A G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=5.180;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.525;QD=18.04;ReadPosRankSum=1.693;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1675,174,0 chrIV 434129 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.07;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1638,168,0 chrIV 434178 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=23.17;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3092,304,0 chrIV 434468 . G A 170.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=21.26;SB=-5.481e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:203,21,0 chrIV 434492 . C T 178.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;DP=14;Dels=0.00;FS=11.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=1;MQRankSum=0.231;QD=12.71;ReadPosRankSum=2.392;SB=-6.675e+01 GT:AD:DP:GQ:PL 0/1:4,10:14:29:208,0,29 chrIV 434516 . G C 255 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=1;QD=17.00;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:288,30,0 chrIV 434545 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=1;MQRankSum=0.361;QD=1.32;ReadPosRankSum=0.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:6,4:10:43:43,0,101 chrIV 434547 . T G 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9900;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=1;MQRankSum=-0.550;QD=2.01;ReadPosRankSum=-0.937;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,4:8:46:46,0,73 chrIV 434549 . G A 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9900;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=1;MQRankSum=-0.550;QD=2.01;ReadPosRankSum=-0.937;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,4:8:46:46,0,70 chrIV 434552 . C A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.9900;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=1;MQRankSum=-0.922;QD=2.12;ReadPosRankSum=-0.421;SB=-6.390e-03 GT:AD:DP:GQ:PL 0/1:5,4:9:47:49,0,47 chrIV 434564 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.52;MQ0=1;MQRankSum=-1.537;QD=1.75;ReadPosRankSum=-1.537;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:4,3:7:42:42,0,72 chrIV 434582 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=9.41;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrIV 434648 . C T 149.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=11;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=2;MQRankSum=0.751;QD=13.59;ReadPosRankSum=0.751;SB=-5.126e+01 GT:AD:DP:GQ:PL 0/1:2,9:11:6:179,0,6 chrIV 434679 . T C 196.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=2;QD=17.82;SB=-8.077e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:229,24,0 chrIV 434684 . A G 136.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=11;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=2;MQRankSum=0.751;QD=12.44;ReadPosRankSum=0.751;SB=-4.454e+01 GT:AD:DP:GQ:PL 0/1:3,8:11:4:166,0,4 chrIV 434693 . G A 84.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;QD=16.90;SB=-2.555e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:117,12,0 chrIV 434695 . G T 83.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;QD=16.70;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:116,12,0 chrIV 434704 . A C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=5.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIV 434776 . T A 1814 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=15.37;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1847,186,0 chrIV 434834 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=24.78;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3345,346,0 chrIV 434864 . A T 2650 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=24.54;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2683,265,0 chrIV 435072 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=25.47;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2300,240,0 chrIV 435200 . G T 1655 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.36;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1688,165,0 chrIV 435202 . A C 1618 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.11;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1651,171,0 chrIV 435246 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=19.13;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1506,153,0 chrIV 435518 . A T 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.039;QD=26.55;ReadPosRankSum=1.693;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2369,228,0 chrIV 435532 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.622;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.052;QD=25.16;ReadPosRankSum=1.627;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2524,258,0 chrIV 435564 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=25.03;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2661,270,0 chrIV 435820 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.757;QD=24.01;ReadPosRankSum=2.396;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3361,343,0 chrIV 435908 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.81;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3108,310,0 chrIV 435935 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=388.3814;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=1.191;QD=0.15;ReadPosRankSum=-3.559;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:105,5:110:46:46,0,50 chrIV 436026 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.33;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2237,225,0 chrIV 436162 . A G 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.115;QD=19.74;ReadPosRankSum=1.685;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1474,153,0 chrIV 436237 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.04;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:971,99,0 chrIV 436257 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.04;FS=0.000;HaplotypeScore=9.2982;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.09;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1331,132,0 chrIV 436482 . T A 3161 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=25.70;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3194,313,0 chrIV 436525 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=26.42;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3672,370,0 chrIV 436994 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.050;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=0.270;QD=24.66;ReadPosRankSum=1.700;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2721,271,0 chrIV 437035 . C A 2772 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=25.43;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2805,277,0 chrIV 437130 . A G 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.811;QD=22.38;ReadPosRankSum=2.359;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1846,192,0 chrIV 437637 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=25.60;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2516,255,0 chrIV 437695 . T G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.458;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.392;QD=23.85;ReadPosRankSum=1.664;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2466,255,0 chrIV 437881 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=22.81;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2291,243,0 chrIV 437890 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.389;QD=22.82;ReadPosRankSum=1.698;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2361,243,0 chrIV 437896 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=23.45;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2401,232,0 chrIV 437955 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=144;Dels=0.00;FS=9.404;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.965;QD=23.24;ReadPosRankSum=2.951;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3347,343,0 chrIV 438868 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=3.534;HaplotypeScore=12.6479;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.787;QD=25.62;ReadPosRankSum=1.693;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4534,475,0 chrIV 439479 . A G 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.696;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.487;QD=23.09;ReadPosRankSum=1.576;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2088,219,0 chrIV 439746 . A T 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.087;QD=25.34;ReadPosRankSum=1.662;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2542,258,0 chrIV 439768 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.521;QD=27.19;ReadPosRankSum=1.665;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2834,288,0 chrIV 439851 . C G 2976 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.00;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3009,304,0 chrIV 440889 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4141,430,0 chrIV 441071 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.377;QD=22.59;ReadPosRankSum=1.649;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3817,391,0 chrIV 441238 . T G 5835.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.72;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5835,613,0 chrIV 441367 . C T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;DP=252;Dels=0.00;FS=13.417;HaplotypeScore=206.4175;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=6.585;QD=9.34;ReadPosRankSum=-12.664;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:85,167:252:99:2386,240,0 chrIV 441465 . A G 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=2.953;HaplotypeScore=22.8028;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.299;QD=22.60;ReadPosRankSum=2.417;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:5152,529,0 chrIV 441629 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.22;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4110,424,0 chrIV 441636 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.655;QD=22.23;ReadPosRankSum=1.713;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4002,412,0 chrIV 441738 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.68;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4191,412,0 chrIV 441971 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2624,259,0 chrIV 442273 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.102;QD=25.21;ReadPosRankSum=1.681;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3429,355,0 chrIV 442843 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.543;QD=24.87;ReadPosRankSum=1.705;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3217,328,0 chrIV 443218 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.98;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4347,439,0 chrIV 443547 . A G 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.310;QD=24.51;ReadPosRankSum=1.690;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2043,207,0 chrIV 443786 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=28.28;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2267,225,0 chrIV 444518 . T C 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.66;ReadPosRankSum=1.550;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:99:932,102,0 chrIV 445208 . C A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4595,448,0 chrIV 445249 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.5677;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.95;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4383,445,0 chrIV 445581 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=3.850;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.218;QD=23.27;ReadPosRankSum=1.675;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4235,439,0 chrIV 445817 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.50;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3405,340,0 chrIV 445993 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=170;Dels=0.00;FS=10.242;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.864;QD=23.05;ReadPosRankSum=2.888;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3919,409,0 chrIV 446016 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.0172;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.79;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3867,385,0 chrIV 446066 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.048;QD=23.75;ReadPosRankSum=1.688;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3728,385,0 chrIV 446126 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9130;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.03;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3532,361,0 chrIV 446188 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=2.773;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.741;QD=24.31;ReadPosRankSum=2.412;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3242,336,0 chrIV 446573 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.225;QD=27.27;ReadPosRankSum=1.690;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2269,231,0 chrIV 446658 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=28.51;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2029,201,0 chrIV 446874 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1649,174,0 chrIV 446954 . G A 965 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.54;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:998,99,0 chrIV 447357 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.8473;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.43;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3982,397,0 chrIV 447952 . G C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.20;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3828,388,0 chrIV 448175 . A G 4801.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.54;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4801,484,0 chrIV 448388 . T C 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=193;Dels=0.00;FS=2.847;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.413;QD=25.25;ReadPosRankSum=2.398;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4873,508,0 chrIV 448634 . G C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3743,382,0 chrIV 449024 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.714;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=25.21;ReadPosRankSum=1.678;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3235,339,0 chrIV 449471 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=25.66;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2445,243,0 chrIV 449477 . C G 2241 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=25.76;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2274,231,0 chrIV 449521 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-0.309;QD=24.12;ReadPosRankSum=1.670;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1408,144,0 chrIV 449562 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=23.98;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1136,114,0 chrIV 449566 . G C 1089 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=25.33;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1122,114,0 chrIV 449578 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=24.61;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1042,105,0 chrIV 449579 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=23.90;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1037,105,0 chrIV 449650 . G T 887 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:920,99,0 chrIV 449709 . A G 615 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=23.65;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:69:648,69,0 chrIV 449722 . A T 217 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-2.282;QD=15.50;ReadPosRankSum=2.100;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:2,12:14:33:250,33,0 chrIV 449727 . C A 220.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:27:253,27,0 chrIV 449742 . T C 48.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=9.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrIV 449759 . T A 33.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=0.731;QD=6.64;ReadPosRankSum=0.731;SB=-2.546e+01 GT:AD:DP:GQ:PL 0/1:1,4:5:10:63,0,10 chrIV 449761 . T A 83.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=0.731;QD=16.70;ReadPosRankSum=0.731;SB=-3.155e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:12:116,12,0 chrIV 449770 . T C 199.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.217;QD=12.44;ReadPosRankSum=1.519;SB=-2.803e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:24:232,24,0 chrIV 449788 . T G 674 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=23.24;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:707,72,0 chrIV 449988 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=29.07;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2068,204,0 chrIV 450139 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.25;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1202,123,0 chrIV 450232 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.34;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1469,147,0 chrIV 450801 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4822;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.16;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3830,400,0 chrIV 452236 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=6.442;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.826;QD=24.69;ReadPosRankSum=2.381;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4444,451,0 chrIV 452771 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1120,108,0 chrIV 452803 . T C 793 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:826,84,0 chrIV 453755 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.681;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.424;QD=27.66;ReadPosRankSum=2.408;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3291,334,0 chrIV 453843 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.19;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2527,261,0 chrIV 453852 . A T 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.966;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.013;QD=24.26;ReadPosRankSum=2.349;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2410,234,0 chrIV 453908 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.74;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2359,228,0 chrIV 454191 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.77;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4071,403,0 chrIV 454502 . C T 5728.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.90;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5728,598,0 chrIV 454817 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8725;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.79;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2403,249,0 chrIV 455316 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3029,298,0 chrIV 455506 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.17;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3481,357,0 chrIV 455545 . A T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.2860;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.36;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3550,358,0 chrIV 455618 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=162;Dels=0.00;FS=2.583;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.081;QD=25.98;ReadPosRankSum=2.931;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:4209,430,0 chrIV 458042 . G T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.91;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3343,334,0 chrIV 458401 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2702,265,0 chrIV 458653 . T C 5628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.081;QD=26.93;ReadPosRankSum=3.360;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:4,205:209:99:5628,580,0 chrIV 458851 . G A 6862.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=21.9743;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.42;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,290:293:99:6862,694,0 chrIV 459265 . T C 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=3.134;HaplotypeScore=13.4634;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.016;QD=25.59;ReadPosRankSum=1.635;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:1,213:219:99:5605,580,0 chrIV 459304 . G A 5052.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.39;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5052,499,0 chrIV 459514 . G T 3143 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3176,319,0 chrIV 459567 . G A 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.335;QD=25.37;ReadPosRankSum=1.537;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3204,319,0 chrIV 459811 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.301;QD=24.32;ReadPosRankSum=1.675;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2976,301,0 chrIV 459909 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.04;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3867,382,0 chrIV 460050 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.53;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3582,352,0 chrIV 460219 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.75;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3292,340,0 chrIV 461192 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.5261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4522,463,0 chrIV 461320 . G A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.5343;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.69;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:5095,502,0 chrIV 461425 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,105:109:99:2314,237,0 chrIV 461469 . G C 2778 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2811,291,0 chrIV 461615 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=5.896;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.000;QD=24.47;ReadPosRankSum=2.930;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2480,255,0 chrIV 461656 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.874;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.363;QD=24.49;ReadPosRankSum=1.704;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:3070,324,0 chrIV 462097 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.4732;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.763;QD=25.44;ReadPosRankSum=1.696;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4909,505,0 chrIV 462476 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3943,394,0 chrIV 462658 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=139;Dels=0.00;FS=8.168;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.027;QD=24.34;ReadPosRankSum=3.383;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3383,351,0 chrIV 463263 . C A 4892.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.7131;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.48;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4892,478,0 chrIV 463393 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=2.795;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.008;QD=25.99;ReadPosRankSum=2.418;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:4055,409,0 chrIV 464012 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.1049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3754,391,0 chrIV 464138 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.5756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.95;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4191,430,0 chrIV 464256 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.0563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5530,547,0 chrIV 464487 . C G 4239.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.42;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4239,433,0 chrIV 464571 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.44;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4223,427,0 chrIV 465051 . T A 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=175;Dels=0.00;FS=2.580;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=1.328;QD=19.27;ReadPosRankSum=2.914;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3372,331,0 chrIV 465056 . C G 3203 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.9747;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=19.77;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3236,331,0 chrIV 465343 . T A 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-1.603;QD=26.19;ReadPosRankSum=1.680;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3509,346,0 chrIV 465360 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=25.28;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3792,379,0 chrIV 465541 . C G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.20;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3678,373,0 chrIV 465563 . T A 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=167;Dels=0.00;FS=9.762;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.958;QD=21.70;ReadPosRankSum=2.897;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3624,373,0 chrIV 465662 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=240.2978;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=23.27;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3654,364,0 chrIV 465690 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0276;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.09;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3292,322,0 chrIV 465882 . G A 4315.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2736;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=26.64;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4315,427,0 chrIV 466062 . A G 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=203;Dels=0.00;FS=13.132;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.205;QD=24.39;ReadPosRankSum=2.965;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4951,526,0 chrIV 466170 . A G 7805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=314;Dels=0.00;FS=3.783;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.559;QD=24.86;ReadPosRankSum=1.710;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:1,312:314:99:7805,820,0 chrIV 466356 . A G 6598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=317;Dels=0.00;FS=2.904;HaplotypeScore=11.4258;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.313;QD=20.81;ReadPosRankSum=2.395;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:2,315:317:99:6598,667,0 chrIV 466362 . T C 6170.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=7.1158;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.97;SB=-3.417e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:6170,652,0 chrIV 466410 . T C 7165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.087;DP=338;Dels=0.00;FS=22.498;HaplotypeScore=18.4166;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-2.051;QD=21.20;ReadPosRankSum=4.180;SB=-3.955e+03 GT:AD:DP:GQ:PL 1/1:6,332:338:99:7165,736,0 chrIV 466737 . C T 5873.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.8933;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.32;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5873,574,0 chrIV 467306 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.23;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4087,409,0 chrIV 467442 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.4230;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.33;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3555,352,0 chrIV 467595 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.357;QD=25.49;ReadPosRankSum=-1.556;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:4027,415,0 chrIV 467790 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.04;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4400,448,0 chrIV 467803 . T A 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=192;Dels=0.00;FS=3.021;HaplotypeScore=7.4304;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.273;QD=24.29;ReadPosRankSum=2.424;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4664,463,0 chrIV 469194 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.53;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2918,289,0 chrIV 471348 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.175;QD=26.51;ReadPosRankSum=1.693;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2392,243,0 chrIV 472918 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.03;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3655,361,0 chrIV 473492 . C T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4703,490,0 chrIV 473912 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.46;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3413,343,0 chrIV 474625 . T G 4159.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.04;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4159,427,0 chrIV 474628 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=172;Dels=0.00;FS=2.400;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-2.139;QD=23.53;ReadPosRankSum=3.378;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:4047,421,0 chrIV 476533 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1625,162,0 chrIV 477664 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.27;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2756,282,0 chrIV 477857 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.26;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3561,367,0 chrIV 478019 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.79;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4041,432,0 chrIV 478092 . G C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.2963;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.38;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3718,379,0 chrIV 478977 . A G 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.994;QD=24.45;ReadPosRankSum=1.714;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4817,490,0 chrIV 479106 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3995,391,0 chrIV 479655 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.27;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2557,255,0 chrIV 479694 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2617,270,0 chrIV 479946 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.89;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3560,372,0 chrIV 480076 . G C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.80;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4514,460,0 chrIV 480096 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.73;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4273,439,0 chrIV 480135 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=158;Dels=0.00;FS=3.515;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.307;QD=20.18;ReadPosRankSum=1.710;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3222,331,0 chrIV 480168 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.19;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3652,373,0 chrIV 480222 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.7447;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.52;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3880,385,0 chrIV 480231 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=5.238;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.386;QD=23.55;ReadPosRankSum=1.688;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3697,373,0 chrIV 480345 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.40;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3685,382,0 chrIV 480624 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.1548;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=26.05;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4299,427,0 chrIV 480648 . G C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.32;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3848,397,0 chrIV 480657 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=7.155;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.241;QD=22.13;ReadPosRankSum=2.362;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3718,382,0 chrIV 480726 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.04;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4131,406,0 chrIV 480846 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.3349;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.42;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4855,475,0 chrIV 480887 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=183;Dels=0.00;FS=6.068;HaplotypeScore=9.4191;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.409;QD=24.80;ReadPosRankSum=2.939;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:3,179:183:99:4539,457,0 chrIV 480972 . C A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4155,418,0 chrIV 481802 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.92;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3575,367,0 chrIV 482148 . A G 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.067;QD=19.67;ReadPosRankSum=1.697;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1980,204,0 chrIV 482955 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.924;QD=24.13;ReadPosRankSum=1.703;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2953,306,0 chrIV 482988 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.91;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3363,334,0 chrIV 483119 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=117;Dels=0.00;FS=6.760;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-1.735;QD=22.95;ReadPosRankSum=2.324;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2718,276,0 chrIV 483136 . T C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.852;QD=22.76;ReadPosRankSum=1.677;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2901,300,0 chrIV 483162 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.74;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2958,298,0 chrIV 483171 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.91;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3065,301,0 chrIV 483341 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.493;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.334;QD=23.48;ReadPosRankSum=1.702;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2733,276,0 chrIV 483420 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.74;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2833,286,0 chrIV 483422 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.83;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2915,286,0 chrIV 483501 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.39;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2442,252,0 chrIV 483735 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.45;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4479,463,0 chrIV 484026 . A G 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=79.2781;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.532;QD=22.72;ReadPosRankSum=1.698;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2328,237,0 chrIV 484028 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=100;Dels=0.00;FS=2.595;HaplotypeScore=78.2887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.296;QD=22.54;ReadPosRankSum=2.929;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2287,231,0 chrIV 484645 . C A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4636,451,0 chrIV 484952 . G A 5506.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5506,550,0 chrIV 485593 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.096;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.147;QD=26.44;ReadPosRankSum=1.709;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:4072,412,0 chrIV 485672 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9876;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.14;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,171:176:99:3721,373,0 chrIV 485723 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.89;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3896,400,0 chrIV 486710 . A T 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=87;Dels=0.00;FS=2.895;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.883;QD=21.89;ReadPosRankSum=2.393;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1937,198,0 chrIV 487279 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.75;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4197,430,0 chrIV 488878 . C A 3153 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3186,319,0 chrIV 491804 . T A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.11;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3470,346,0 chrIV 492796 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.35;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4821,499,0 chrIV 495483 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=2.618;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.039;QD=24.98;ReadPosRankSum=2.325;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3947,406,0 chrIV 495642 . G T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3785,399,0 chrIV 496104 . A T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.67;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3594,358,0 chrIV 496558 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3473,346,0 chrIV 497624 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3355,331,0 chrIV 498305 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.00;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3375,337,0 chrIV 499794 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3390;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.78;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3462,363,0 chrIV 500512 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3398;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2933,297,0 chrIV 500594 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.166;QD=25.07;ReadPosRankSum=1.673;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4488,457,0 chrIV 500673 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4048,397,0 chrIV 501667 . A C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.45;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3325,343,0 chrIV 505548 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.974;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.687;QD=24.89;ReadPosRankSum=2.398;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2398,249,0 chrIV 506998 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1420;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.89;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2780,279,0 chrIV 507142 . T A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.95;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3885,385,0 chrIV 507180 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.66;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3946,388,0 chrIV 507490 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.49;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2867,306,0 chrIV 507718 . A T 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=23.51;ReadPosRankSum=1.583;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2219,219,0 chrIV 507975 . A G 762 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:795,84,0 chrIV 509186 . A T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.223;QD=23.07;ReadPosRankSum=1.698;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2386,234,0 chrIV 509407 . G T 837 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:870,84,0 chrIV 509488 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1051,108,0 chrIV 509821 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.34;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2466,252,0 chrIV 509831 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.87;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2320,240,0 chrIV 511129 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3782,391,0 chrIV 512368 . C A 5584.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.8239;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.34;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5584,595,0 chrIV 512393 . G A 5362.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.7922;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.03;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5362,565,0 chrIV 512478 . A C 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=182;Dels=0.00;FS=10.566;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.528;QD=24.83;ReadPosRankSum=2.928;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4519,460,0 chrIV 513586 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=3.266;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;MQRankSum=-0.198;QD=22.86;ReadPosRankSum=1.683;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1656,171,0 chrIV 520815 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=27.56;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3335,334,0 chrIV 521406 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.501;QD=24.26;ReadPosRankSum=1.641;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3687,376,0 chrIV 521623 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2655,270,0 chrIV 521753 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=26.21;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3047,298,0 chrIV 521776 . C G 3112 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.72;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3145,322,0 chrIV 525250 . G T 987 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=23.7873;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=12.49;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1020,105,0 chrIV 525682 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=155;Dels=0.00;FS=3.034;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.040;QD=23.92;ReadPosRankSum=2.337;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3708,379,0 chrIV 527319 . C G 2461 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1842;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=24.13;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2494,264,0 chrIV 527530 . A C 3803.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=24.38;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3803,388,0 chrIV 527743 . A G 779 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=-0.733;QD=15.58;ReadPosRankSum=2.350;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,47:50:87:812,87,0 chrIV 527797 . A G 498 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=8;QD=6.30;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,77:79:54:531,54,0 chrIV 527851 . A G 4028.01 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=15;QD=19.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4028,415,0 chrIV 538198 . A G 253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=27;Dels=0.00;FS=34.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=1;MQRankSum=2.247;QD=9.37;ReadPosRankSum=2.729;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:3,24:27:30:286,30,0 chrIV 538233 . G C 163.06 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=3.98;SB=-3.007e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:21:196,21,0 chrIV 538234 . A C 147.06 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=3.59;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:21:180,21,0 chrIV 538236 . G A 147.06 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=3.13;SB=-2.051e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:21:180,21,0 chrIV 538243 . G A 351 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=5.57;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:39:384,39,0 chrIV 538249 . G T 735 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=9.07;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:75:768,75,0 chrIV 538369 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=22.24;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4336,451,0 chrIV 539196 . C A 5297.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.16;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5297,550,0 chrIV 539207 . T C 5373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=3.029;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.958;QD=22.96;ReadPosRankSum=2.428;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:5373,550,0 chrIV 539475 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.67;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4960,478,0 chrIV 540228 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3670,361,0 chrIV 540328 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3404,346,0 chrIV 541135 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.94;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1733,174,0 chrIV 541154 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=27.31;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1890,183,0 chrIV 541221 . A T 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=4.363;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.952;QD=25.59;ReadPosRankSum=1.683;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1850,180,0 chrIV 541267 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=26.91;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2240,219,0 chrIV 541275 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.48;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2114,213,0 chrIV 541555 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.77;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3394,340,0 chrIV 541985 . T A 2783 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.30;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2816,280,0 chrIV 543883 . T A 2852 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2885,286,0 chrIV 544280 . T G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.266;QD=26.21;ReadPosRankSum=1.688;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2077,213,0 chrIV 544682 . A C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=5.7485;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.264;QD=0.72;ReadPosRankSum=-2.576;SB=1.24 GT:AD:DP:GQ:PL 1/1:6,12:18:6:44,6,0 chrIV 545047 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=28.22;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:4177,412,0 chrIV 545374 . C T 5686.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.9147;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.20;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5686,592,0 chrIV 547875 . C A 1205 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.42;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1238,132,0 chrIV 547876 . A G 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=8.808;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.585;QD=19.89;ReadPosRankSum=2.320;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1167,126,0 chrIV 548356 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=4.340;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.074;QD=24.39;ReadPosRankSum=1.711;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:4025,420,0 chrIV 549071 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.4033;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.01;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4827,484,0 chrIV 550573 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.158;QD=26.86;ReadPosRankSum=1.691;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4567,463,0 chrIV 551387 . C A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.4487;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,190:195:99:4734,496,0 chrIV 551436 . T C 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.684;QD=26.25;ReadPosRankSum=1.652;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5696,583,0 chrIV 551764 . A C 2605 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6472;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.26;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2638,270,0 chrIV 551843 . G T 1337 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=15.0549;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=13.78;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:97:99:1370,147,0 chrIV 553175 . T G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.845;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.127;QD=21.88;ReadPosRankSum=-0.887;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1827,156,0 chrIV 553182 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.79;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1842,189,0 chrIV 553186 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.54;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1776,186,0 chrIV 553450 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=11.7558;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.538;QD=26.27;ReadPosRankSum=1.708;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3757,388,0 chrIV 553567 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=24.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3417,340,0 chrIV 553568 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=24.59;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3418,340,0 chrIV 553583 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.958;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-1.481;QD=21.09;ReadPosRankSum=2.378;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2923,306,0 chrIV 553591 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.976;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;MQRankSum=0.528;QD=21.20;ReadPosRankSum=2.411;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2747,276,0 chrIV 553624 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.96;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2213,216,0 chrIV 553651 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.41;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2666,270,0 chrIV 553670 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.69;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3113,307,0 chrIV 553867 . C G 2860 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=26.00;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2893,292,0 chrIV 554600 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3611,361,0 chrIV 555329 . A T 2376 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=27.95;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2409,234,0 chrIV 555425 . A C 2801 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.93;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2834,288,0 chrIV 555452 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.78;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2482,246,0 chrIV 555482 . A C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.403;QD=23.60;ReadPosRankSum=1.611;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2063,210,0 chrIV 555588 . C T 1399 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1432,150,0 chrIV 556545 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=6.596;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.253;QD=25.86;ReadPosRankSum=2.401;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2697,273,0 chrIV 556732 . T C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=124;Dels=0.00;FS=9.354;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.049;QD=24.18;ReadPosRankSum=2.927;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:3031,312,0 chrIV 556934 . A C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.40;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3343,348,0 chrIV 557054 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.56;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:4141,418,0 chrIV 557097 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=25.50;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4743,469,0 chrIV 557109 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.68;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3991,391,0 chrIV 557113 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.91;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3764,373,0 chrIV 557161 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=172;Dels=0.00;FS=3.414;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.010;QD=17.93;ReadPosRankSum=1.609;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3117,327,0 chrIV 557599 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.36;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3880,388,0 chrIV 557899 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=194;Dels=0.00;FS=3.033;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.662;QD=24.26;ReadPosRankSum=1.696;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4706,487,0 chrIV 558167 . T A 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.7611;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.510;QD=19.35;ReadPosRankSum=-0.644;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2065,207,0 chrIV 558895 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3293,334,0 chrIV 558963 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.37;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3924,406,0 chrIV 559132 . T A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.85;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4213,412,0 chrIV 559236 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5361;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.58;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4132,403,0 chrIV 559935 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3340,343,0 chrIV 560449 . A G 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.433;QD=25.62;ReadPosRankSum=1.679;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5048,511,0 chrIV 560536 . T A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4380;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.16;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4783,487,0 chrIV 560715 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.66;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3268,339,0 chrIV 561251 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.01;FS=4.075;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.694;QD=25.09;ReadPosRankSum=1.619;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2391,237,0 chrIV 561304 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.343;QD=25.06;ReadPosRankSum=1.697;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2489,252,0 chrIV 561926 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4734,466,0 chrIV 562139 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.526;QD=24.32;ReadPosRankSum=1.691;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4086,421,0 chrIV 562280 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.367;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.117;QD=25.64;ReadPosRankSum=1.664;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3948,409,0 chrIV 562801 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=26.39;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3615,355,0 chrIV 562871 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.97;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2749,279,0 chrIV 562925 . A G 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=2.611;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-0.845;QD=19.89;ReadPosRankSum=2.903;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1465,150,0 chrIV 562970 . G T 1333 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=10.1915;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=16.46;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1366,138,0 chrIV 562989 . G C 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-1.132;QD=14.03;ReadPosRankSum=1.686;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1113,117,0 chrIV 563010 . C T 265.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.596;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=64.2808;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=-2.365;QD=3.27;ReadPosRankSum=1.908;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:5,75:80:22:298,22,0 chrIV 563014 . T C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=71;Dels=0.00;FS=1.591;HaplotypeScore=65.4406;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=-0.897;QD=0.69;ReadPosRankSum=1.726;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:7,64:71:9:81,9,0 chrIV 563017 . A T 523 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=62.4882;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;MQRankSum=0.607;QD=6.79;ReadPosRankSum=1.192;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:60:556,60,0 chrIV 563021 . G A 712 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=62.5829;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=9.01;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:745,75,0 chrIV 563080 . C A 1956 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.81;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1989,204,0 chrIV 563209 . G C 2724 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=24.76;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2757,279,0 chrIV 563218 . G T 2804 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2361;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.60;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2837,277,0 chrIV 564360 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.22;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4667,487,0 chrIV 564366 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.46;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4806,487,0 chrIV 564745 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.28;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4070,412,0 chrIV 564879 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.73;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3100,310,0 chrIV 564993 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1561,159,0 chrIV 565245 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0585;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.99;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4348,445,0 chrIV 565313 . C T 4500.01 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.84;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4500,466,0 chrIV 565317 . T G 4510.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.888;QD=22.78;ReadPosRankSum=1.679;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4510,460,0 chrIV 565322 . A G 4620.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=4.194;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.398;QD=23.33;ReadPosRankSum=1.697;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4620,472,0 chrIV 565468 . A G 5546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=212;Dels=0.00;FS=3.014;HaplotypeScore=12.9668;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.957;QD=26.16;ReadPosRankSum=2.426;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:2,207:212:99:5546,562,0 chrIV 565653 . G T 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=158;Dels=0.00;FS=1.817;HaplotypeScore=16.1931;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-1.172;QD=18.80;ReadPosRankSum=3.129;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:5,153:158:99:3004,321,0 chrIV 565654 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=159;Dels=0.01;FS=5.065;HaplotypeScore=8.8941;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.491;QD=18.13;ReadPosRankSum=3.380;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:4,151:157:99:2915,318,0 chrIV 565705 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.00;FS=4.840;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-1.083;QD=18.78;ReadPosRankSum=1.705;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2475,252,0 chrIV 565709 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.23;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2541,258,0 chrIV 565899 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=28.77;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3913,391,0 chrIV 566007 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.85;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4372,439,0 chrIV 566055 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.06;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4546,451,0 chrIV 566376 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.35;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4082,424,0 chrIV 566726 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.13;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3423,331,0 chrIV 567125 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.358;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.728;QD=25.21;ReadPosRankSum=1.712;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4286,439,0 chrIV 567267 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.161;QD=25.66;ReadPosRankSum=1.712;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4541,463,0 chrIV 567364 . A G 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=4.316;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.656;QD=27.07;ReadPosRankSum=1.675;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4899,490,0 chrIV 567805 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:3019,298,0 chrIV 567972 . A T 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=148;Dels=0.00;FS=5.824;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.571;QD=25.94;ReadPosRankSum=2.953;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3839,391,0 chrIV 568017 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3219,319,0 chrIV 568131 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.675;QD=24.67;ReadPosRankSum=1.704;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3067,315,0 chrIV 568816 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=25.60;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2926,292,0 chrIV 568847 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=25.77;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2378,234,0 chrIV 568863 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.54;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2273,237,0 chrIV 568871 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.57;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2298,228,0 chrIV 569125 . G C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=27.41;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3591,367,0 chrIV 570168 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=3.438;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.678;QD=23.78;ReadPosRankSum=1.624;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3101,313,0 chrIV 570290 . A T 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=4.027;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.458;QD=25.75;ReadPosRankSum=1.533;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3579,349,0 chrIV 570369 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.38;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3053,307,0 chrIV 570631 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.66;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3541,346,0 chrIV 571144 . C A 4887.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5063;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4887,484,0 chrIV 571737 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6246;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.70;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2356,243,0 chrIV 571806 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=8.167;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.915;QD=24.51;ReadPosRankSum=2.408;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2925,303,0 chrIV 572008 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3652,364,0 chrIV 572293 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3164,322,0 chrIV 572610 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.04;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3516,349,0 chrIV 572800 . G A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.75;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4584,451,0 chrIV 572826 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.90;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3753,367,0 chrIV 573095 . A G 4543.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2173;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.83;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4543,463,0 chrIV 573118 . T A 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=4.527;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=1.039;QD=26.04;ReadPosRankSum=1.714;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4947,487,0 chrIV 573174 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=173;Dels=0.00;FS=2.581;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.480;QD=19.49;ReadPosRankSum=2.936;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3371,346,0 chrIV 573177 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=174;Dels=0.00;FS=13.431;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.140;QD=19.82;ReadPosRankSum=2.959;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3448,363,0 chrIV 573702 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.45;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:3214,330,0 chrIV 573826 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.88;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3151,316,0 chrIV 573915 . T G 2314 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.61;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2347,234,0 chrIV 573928 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=3.044;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.531;QD=22.12;ReadPosRankSum=2.320;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2157,216,0 chrIV 573950 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.69;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2245,225,0 chrIV 574010 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.18;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2752,271,0 chrIV 574093 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.54;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3442,349,0 chrIV 574445 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.3623;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.59;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4334,436,0 chrIV 574619 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.16;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4322,442,0 chrIV 574639 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=188;Dels=0.00;FS=5.537;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.712;QD=22.72;ReadPosRankSum=2.940;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:4271,445,0 chrIV 574694 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.4987;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.13;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4788,490,0 chrIV 574753 . T C 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=6.705;HaplotypeScore=11.1960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.863;QD=21.25;ReadPosRankSum=2.386;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4080,418,0 chrIV 574934 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.16;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3866,394,0 chrIV 574968 . G C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.89;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4297,445,0 chrIV 575468 . A C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=2.974;HaplotypeScore=10.4068;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.650;QD=23.41;ReadPosRankSum=2.387;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3698,382,0 chrIV 575497 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.72;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3676,367,0 chrIV 575737 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9721;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=27.16;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3938,391,0 chrIV 575774 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.00;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3700,376,0 chrIV 576149 . T C 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.415;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.924;QD=23.64;ReadPosRankSum=1.694;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2208,228,0 chrIV 576258 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=24.60;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2837,291,0 chrIV 576295 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.2036;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.08;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2351,240,0 chrIV 576301 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.068;QD=21.98;ReadPosRankSum=1.698;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2275,234,0 chrIV 576577 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.70;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2689,267,0 chrIV 576626 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.61;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2904,286,0 chrIV 576707 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.49;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3114,307,0 chrIV 576713 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.12;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3130,307,0 chrIV 576734 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.015;QD=21.10;ReadPosRankSum=1.708;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3134,321,0 chrIV 576932 . A T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=26.16;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4185,421,0 chrIV 577266 . C A 4714.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4714,463,0 chrIV 577862 . C T 6147.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.2408;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.19;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6147,613,0 chrIV 577907 . T C 6769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=265;Dels=0.00;FS=6.039;HaplotypeScore=21.2628;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.345;QD=25.54;ReadPosRankSum=2.966;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:3,262:265:99:6769,709,0 chrIV 578168 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.14;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3343,346,0 chrIV 578566 . T A 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.347;QD=24.80;ReadPosRankSum=1.697;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2488,244,0 chrIV 578638 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=114.8668;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.06;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2453,249,0 chrIV 578649 . T C 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=3.015;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.793;QD=17.39;ReadPosRankSum=2.362;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2485,249,0 chrIV 578728 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.00;FS=3.623;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.889;QD=24.47;ReadPosRankSum=1.709;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3818,400,0 chrIV 578805 . A T 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.966;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.000;QD=26.20;ReadPosRankSum=1.711;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4245,427,0 chrIV 578841 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=25.43;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4349,433,0 chrIV 578941 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=2.881;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.648;QD=24.31;ReadPosRankSum=2.368;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4425,457,0 chrIV 579199 . C A 1843 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.20;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1876,186,0 chrIV 579222 . A T 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-1.251;QD=19.93;ReadPosRankSum=1.684;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1468,150,0 chrIV 579404 . T A 1786 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.90;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1819,186,0 chrIV 579575 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=26.18;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2730,276,0 chrIV 579755 . A G 3084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=7.176;HaplotypeScore=3.1824;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=-0.235;QD=21.87;ReadPosRankSum=2.415;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3117,321,0 chrIV 579762 . A C 2992 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=21.22;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3025,304,0 chrIV 579764 . G A 2972 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=21.23;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3005,306,0 chrIV 579813 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.745;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-1.014;QD=18.79;ReadPosRankSum=1.681;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2589,264,0 chrIV 579817 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=16.63;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2395,246,0 chrIV 579869 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.47;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2981,298,0 chrIV 579879 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=6.647;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.942;QD=19.35;ReadPosRankSum=2.414;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2722,282,0 chrIV 579940 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.84;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3671,364,0 chrIV 580006 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-1.304;QD=20.99;ReadPosRankSum=1.671;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3589,367,0 chrIV 580011 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=181;Dels=0.00;FS=8.762;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-1.481;QD=19.09;ReadPosRankSum=3.411;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3455,355,0 chrIV 580119 . G C 4220.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.53;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4220,436,0 chrIV 580191 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.101;HaplotypeScore=9.9630;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.482;QD=23.98;ReadPosRankSum=1.714;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4677,484,0 chrIV 580230 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.7240;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.09;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5119,529,0 chrIV 580374 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.09;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2184,234,0 chrIV 580561 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.93;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2407,234,0 chrIV 580820 . T A 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.647;QD=25.72;ReadPosRankSum=1.649;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4270,421,0 chrIV 580899 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.236;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.425;QD=25.47;ReadPosRankSum=1.666;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4025,412,0 chrIV 580972 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.501;HaplotypeScore=14.1367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.01;ReadPosRankSum=1.689;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3817,391,0 chrIV 581004 . A C 4837.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.59;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4837,490,0 chrIV 581091 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5062,502,0 chrIV 581181 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.638;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.428;QD=25.07;ReadPosRankSum=1.671;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4388,451,0 chrIV 581388 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.598;QD=24.58;ReadPosRankSum=1.705;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3228,333,0 chrIV 581521 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2491,244,0 chrIV 581857 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.9717;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.32;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3696,382,0 chrIV 581897 . A C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=3.836;HaplotypeScore=17.5255;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.093;QD=23.43;ReadPosRankSum=1.713;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4264,442,0 chrIV 582132 . G T 4995.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.2425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.48;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4995,493,0 chrIV 582466 . T G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3797,394,0 chrIV 582571 . T C 2306 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.75;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2339,240,0 chrIV 582579 . T C 2353 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.20;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2386,249,0 chrIV 582645 . T A 2370 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.7861;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=20.26;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2403,240,0 chrIV 583013 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.38;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4365,454,0 chrIV 583094 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.501;QD=25.10;ReadPosRankSum=0.913;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4142,414,0 chrIV 583235 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1641;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.75;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3563,370,0 chrIV 583433 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.034;QD=24.17;ReadPosRankSum=1.620;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3030,315,0 chrIV 583765 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.75;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2876,283,0 chrIV 583767 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.80;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2706,285,0 chrIV 583925 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4358;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.49;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:4016,394,0 chrIV 583943 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.036;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.800;QD=22.06;ReadPosRankSum=1.671;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3795,385,0 chrIV 584012 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.125;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.652;QD=24.46;ReadPosRankSum=1.710;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3767,388,0 chrIV 584134 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=142;Dels=0.00;FS=5.878;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.293;QD=25.67;ReadPosRankSum=2.950;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3645,370,0 chrIV 584255 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=26.40;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2884,283,0 chrIV 584423 . A C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=5.391;HaplotypeScore=14.8168;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.951;QD=27.47;ReadPosRankSum=1.692;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4808,487,0 chrIV 584534 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.20;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2840,280,0 chrIV 584537 . G T 2596 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.45;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2629,270,0 chrIV 584630 . T C 298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=6.071;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.976;QD=1.71;ReadPosRankSum=0.776;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:36:331,36,0 chrIV 584819 . A G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.766;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.801;QD=25.35;ReadPosRankSum=1.674;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:3075,321,0 chrIV 585317 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=2.748;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.954;QD=24.18;ReadPosRankSum=2.391;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:3080,313,0 chrIV 585358 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.75;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2968,306,0 chrIV 585389 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3382;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.182;QD=25.04;ReadPosRankSum=1.702;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2887,292,0 chrIV 585554 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.655;HaplotypeScore=9.3977;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.633;QD=24.86;ReadPosRankSum=1.692;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4325,433,0 chrIV 586061 . A G 5666.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5666,571,0 chrIV 586386 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.738;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.297;QD=26.26;ReadPosRankSum=1.692;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4622,466,0 chrIV 586458 . T A 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.675;QD=25.51;ReadPosRankSum=1.710;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3928,382,0 chrIV 586700 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.296;QD=24.21;ReadPosRankSum=1.709;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3704,385,0 chrIV 586725 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.89;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3758,379,0 chrIV 586742 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.31;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3427,346,0 chrIV 586784 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.57;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2909,297,0 chrIV 586820 . T C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=5.077;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.656;QD=23.62;ReadPosRankSum=1.698;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2513,258,0 chrIV 586838 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.69;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2354,252,0 chrIV 587113 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.13;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3044,307,0 chrIV 587347 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.56;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2988,315,0 chrIV 588015 . A C 2887 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.91;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2920,303,0 chrIV 588140 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.35;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4086,409,0 chrIV 588243 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=26.72;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4355,427,0 chrIV 588381 . A T 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.482;QD=25.34;ReadPosRankSum=1.710;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4003,394,0 chrIV 588386 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.022;QD=23.98;ReadPosRankSum=1.711;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3933,400,0 chrIV 588450 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.64;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3745,385,0 chrIV 588509 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6271;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.56;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3807,397,0 chrIV 588536 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.14;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3720,382,0 chrIV 588583 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.12;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2484,255,0 chrIV 588705 . G T 2417 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.66;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2450,243,0 chrIV 588825 . A T 1935 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.13;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1968,195,0 chrIV 589025 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.91;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3343,325,0 chrIV 589061 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.27;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3783,376,0 chrIV 589440 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=24.12;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2976,306,0 chrIV 589449 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=23.54;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2764,277,0 chrIV 589505 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.36;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1263,135,0 chrIV 589510 . A T 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.82;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1341,135,0 chrIV 589538 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.11;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1119,111,0 chrIV 589613 . C T 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.258;QD=17.63;ReadPosRankSum=1.447;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1320,144,0 chrIV 589643 . T G 798 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=31.1528;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.78;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:54:84:831,84,0 chrIV 589702 . C G 278 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.35;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:33:311,33,0 chrIV 589875 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.26;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1382,135,0 chrIV 590018 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.055;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-1.554;QD=21.96;ReadPosRankSum=1.661;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2185,228,0 chrIV 590019 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=99;Dels=0.00;FS=9.261;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.296;QD=21.68;ReadPosRankSum=3.277;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:4,94:99:99:2179,228,0 chrIV 590036 . T G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=2.987;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-2.266;QD=23.55;ReadPosRankSum=2.404;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2553,258,0 chrIV 590081 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.063;DP=135;Dels=0.00;FS=10.384;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.283;QD=23.51;ReadPosRankSum=4.127;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:6,129:135:99:3207,328,0 chrIV 590115 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.92;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3940,400,0 chrIV 590328 . A G 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.791;DP=212;Dels=0.00;FS=15.271;HaplotypeScore=7.8687;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.003;QD=23.26;ReadPosRankSum=4.007;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:6,206:212:99:4931,514,0 chrIV 590403 . G A 5757.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.0320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5757,592,0 chrIV 590603 . G A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3940;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.06;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4716,457,0 chrIV 590649 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7228;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.06;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4354,451,0 chrIV 590870 . A G 5335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.5478;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.062;QD=25.17;ReadPosRankSum=1.667;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5335,541,0 chrIV 590898 . T C 5638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=230;Dels=0.00;FS=6.963;HaplotypeScore=7.9474;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.327;QD=24.51;ReadPosRankSum=2.385;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5638,574,0 chrIV 591021 . A G 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=206;Dels=0.00;FS=5.918;HaplotypeScore=19.1955;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.173;QD=24.65;ReadPosRankSum=2.965;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:3,200:206:99:5077,529,0 chrIV 591129 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.448;QD=24.17;ReadPosRankSum=1.654;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4303,445,0 chrIV 591187 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.07;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4453,457,0 chrIV 591205 . C T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.06;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4737,478,0 chrIV 591737 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=1.281;QD=25.01;ReadPosRankSum=1.708;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3651,379,0 chrIV 592009 . G A 5897.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.42;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5897,577,0 chrIV 592050 . T C 5373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=228;Dels=0.00;FS=10.099;HaplotypeScore=12.9718;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.504;QD=23.57;ReadPosRankSum=2.374;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:5373,553,0 chrIV 592072 . T C 4858.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.58;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4858,505,0 chrIV 592124 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.33;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4013,400,0 chrIV 592160 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=8.1731;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.50;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3525,349,0 chrIV 592224 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.000;HaplotypeScore=8.0244;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.677;QD=21.12;ReadPosRankSum=2.373;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2800,291,0 chrIV 593135 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.99;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2457,255,0 chrIV 593192 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=124;Dels=0.00;FS=5.254;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-0.451;QD=21.95;ReadPosRankSum=2.927;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2755,285,0 chrIV 593211 . A C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=4.472;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.148;QD=21.96;ReadPosRankSum=1.707;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3129,316,0 chrIV 593254 . T A 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.537;QD=22.17;ReadPosRankSum=1.679;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4323,439,0 chrIV 593313 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.10;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4066,397,0 chrIV 593316 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.69;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3869,394,0 chrIV 593409 . C T 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.133;DP=207;Dels=0.00;FS=9.145;HaplotypeScore=7.6563;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.004;QD=14.09;ReadPosRankSum=3.073;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:4,200:206:99:2949,348,0 chrIV 593410 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=207;Dels=0.02;FS=3.030;HaplotypeScore=9.8653;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.209;QD=14.57;ReadPosRankSum=2.278;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:3048,360,0 chrIV 593463 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.9916;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.328;QD=17.82;ReadPosRankSum=1.670;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3974,423,0 chrIV 593517 . T G 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=183;Dels=0.00;FS=7.804;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.224;QD=23.80;ReadPosRankSum=2.395;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4355,442,0 chrIV 593642 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.62;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4440,451,0 chrIV 593760 . C T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8769;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.60;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5107,505,0 chrIV 593816 . T A 5671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=223;Dels=0.00;FS=5.974;HaplotypeScore=14.7407;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.643;QD=25.43;ReadPosRankSum=2.914;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5671,577,0 chrIV 594035 . T A 4923.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4923,499,0 chrIV 594150 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=197;Dels=0.00;FS=11.771;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.654;QD=23.95;ReadPosRankSum=3.777;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:6,191:197:99:4718,484,0 chrIV 594402 . A G 6280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=243;Dels=0.00;FS=3.728;HaplotypeScore=6.1995;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.036;QD=25.84;ReadPosRankSum=1.675;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:6280,643,0 chrIV 594517 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.54;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5031,514,0 chrIV 594612 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=201;Dels=0.00;FS=8.353;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.862;QD=22.58;ReadPosRankSum=2.425;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4539,460,0 chrIV 594738 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.08;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2926,300,0 chrIV 594777 . C G 2860 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.70;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2893,297,0 chrIV 594843 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.563;QD=23.14;ReadPosRankSum=1.708;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3309,339,0 chrIV 594975 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.84;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3030,304,0 chrIV 595029 . A G 3082 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=25.06;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3115,316,0 chrIV 595047 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.9196;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.68;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3282,339,0 chrIV 595104 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.31;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2676,259,0 chrIV 595122 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.94;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2855,280,0 chrIV 595269 . C G 3143 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=24.18;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3176,325,0 chrIV 595275 . G T 3177 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=24.63;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3210,313,0 chrIV 595314 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.77;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2947,292,0 chrIV 595528 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.439;QD=24.45;ReadPosRankSum=0.776;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3301,319,0 chrIV 595537 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=24.33;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3430,358,0 chrIV 595587 . T C 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=2.807;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.270;QD=20.76;ReadPosRankSum=2.390;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2587,264,0 chrIV 595597 . G T 2509 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.40;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2542,250,0 chrIV 595662 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.04;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3437,357,0 chrIV 596007 . C T 5104.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.72;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5104,502,0 chrIV 596055 . T C 5809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=229;Dels=0.00;FS=8.458;HaplotypeScore=16.1342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.149;QD=25.37;ReadPosRankSum=3.376;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:4,224:229:99:5809,595,0 chrIV 596770 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.37;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1251,123,0 chrIV 596811 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.49;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1282,132,0 chrIV 596817 . T C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=3.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.490;QD=23.78;ReadPosRankSum=1.667;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1317,135,0 chrIV 596913 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=23.56;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1541,150,0 chrIV 597058 . C T 147.13 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=55.3467;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=1.69;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:18:180,18,0 chrIV 597096 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=121.8525;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.23;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2015,201,0 chrIV 597114 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=147;Dels=0.00;FS=6.110;HaplotypeScore=7.4497;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-2.140;QD=16.22;ReadPosRankSum=2.923;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:3,141:147:99:2417,252,0 chrIV 597218 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=26.02;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3435,349,0 chrIV 597245 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=27.72;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3138,304,0 chrIV 597383 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=27.13;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3635,355,0 chrIV 597461 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=104;Dels=0.00;FS=9.290;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.640;QD=23.55;ReadPosRankSum=3.303;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:4,99:104:99:2482,255,0 chrIV 597488 . T C 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.970;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.410;QD=25.36;ReadPosRankSum=2.317;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2848,288,0 chrIV 597506 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.249;QD=22.45;ReadPosRankSum=1.590;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2772,288,0 chrIV 597668 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.616;QD=24.52;ReadPosRankSum=1.686;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3653,387,0 chrIV 597689 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.62;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4063,415,0 chrIV 597800 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=189;Dels=0.00;FS=6.475;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.033;QD=25.50;ReadPosRankSum=2.423;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4820,490,0 chrIV 598134 . A T 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.077;QD=24.47;ReadPosRankSum=1.617;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2235,228,0 chrIV 598184 . T G 2105 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=25.36;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2138,225,0 chrIV 598232 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.4494;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=25.38;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1683,165,0 chrIV 598266 . T G 1093 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.84;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1126,114,0 chrIV 598369 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.805;QD=24.86;ReadPosRankSum=1.683;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1798,180,0 chrIV 598426 . A C 1253 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=42.5432;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=23.20;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1286,135,0 chrIV 598443 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=20.51;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:751,78,0 chrIV 598491 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.56;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1618,165,0 chrIV 598593 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=26.78;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1586,162,0 chrIV 598655 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.10;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1604,156,0 chrIV 598656 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.78;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1492,153,0 chrIV 598729 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.37;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2002,195,0 chrIV 598749 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.99;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1872,192,0 chrIV 598956 . A G 3151 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=25.41;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3184,336,0 chrIV 599029 . G C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.73;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4056,415,0 chrIV 599160 . A T 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=166;Dels=0.00;FS=9.596;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.285;QD=24.50;ReadPosRankSum=2.934;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:4067,403,0 chrIV 599181 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.76;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4159,418,0 chrIV 599229 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.84;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4291,433,0 chrIV 599314 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.60;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3883,394,0 chrIV 599388 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=23.55;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3839,388,0 chrIV 599409 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=183;Dels=0.00;FS=6.025;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.261;QD=22.33;ReadPosRankSum=2.950;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4087,418,0 chrIV 599654 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.57;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3341,334,0 chrIV 599820 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.72;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3757,411,0 chrIV 599964 . C G 5651.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.8525;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.25;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5651,583,0 chrIV 600037 . T C 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=267;Dels=0.00;FS=3.027;HaplotypeScore=20.2877;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.409;QD=24.55;ReadPosRankSum=2.394;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:6556,688,0 chrIV 600120 . T C 6435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.105;QD=22.98;ReadPosRankSum=1.682;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:1,276:280:99:6435,655,0 chrIV 600127 . T A 6240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=5.8613;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.180;QD=23.11;ReadPosRankSum=1.668;SB=-3.551e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:6240,613,0 chrIV 600177 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.9677;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.70;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4708,490,0 chrIV 600479 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=110.3653;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.62;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2770,282,0 chrIV 600632 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0612;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.253;QD=23.77;ReadPosRankSum=1.658;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2267,225,0 chrIV 600722 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.538;QD=23.09;ReadPosRankSum=1.704;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2942,295,0 chrIV 600764 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=112.1149;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.53;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2722,268,0 chrIV 600792 . G T 2326 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=19.22;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2359,234,0 chrIV 600978 . A T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=23.98;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4389,433,0 chrIV 601015 . A C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=7.898;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=1.173;QD=19.47;ReadPosRankSum=2.403;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2097,219,0 chrIV 601017 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=19.77;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2050,204,0 chrIV 601041 . A G 124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;DP=104;Dels=0.00;FS=1.639;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=0;MQRankSum=-3.175;QD=1.19;ReadPosRankSum=1.868;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:61,43:104:99:154,0,874 chrIV 601057 . A C 791 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=7.53;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:84:824,84,0 chrIV 601059 . C T 864 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=7.78;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:90:897,90,0 chrIV 601317 . T C 10627.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=467;Dels=0.00;FS=8.721;HaplotypeScore=24.5884;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.241;QD=22.76;ReadPosRankSum=3.418;SB=-5.475e+03 GT:AD:DP:GQ:PL 1/1:4,462:467:99:10627,1100,0 chrIV 601524 . C T 8936.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=24.8264;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.68;SB=-4.320e+03 GT:AD:DP:GQ:PL 1/1:0,393:394:99:8936,899,0 chrIV 601683 . C T 6301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.4701;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.719;QD=24.14;ReadPosRankSum=0.776;SB=-3.417e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:6301,631,0 chrIV 602153 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.204;QD=26.37;ReadPosRankSum=1.600;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2802,291,0 chrIV 602488 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.08;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3323,334,0 chrIV 602876 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.61;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3200,316,0 chrIV 603005 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2363,237,0 chrIV 603579 . T A 2534 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2567,264,0 chrIV 603685 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.156;QD=22.96;ReadPosRankSum=1.711;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3834,391,0 chrIV 603689 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.022;QD=22.47;ReadPosRankSum=2.421;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3797,391,0 chrIV 603743 . A G 2498 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.07;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,125:131:99:2531,267,0 chrIV 603839 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.81;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3975,397,0 chrIV 603991 . C A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=27.49;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4316,424,0 chrIV 604105 . T C 6150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-1.084;QD=26.74;ReadPosRankSum=1.642;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:6150,625,0 chrIV 604186 . C T 7172.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=8.6149;MLEAC=2;MLEAF=1.00;MQ=61.35;MQ0=0;QD=27.17;SB=-3.582e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7172,709,0 chrIV 604439 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.7018;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=23.12;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4555,448,0 chrIV 604670 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.960;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.651;QD=22.03;ReadPosRankSum=1.708;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3161,339,0 chrIV 604674 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.21;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3559,352,0 chrIV 604841 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.06;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2616,270,0 chrIV 605187 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.584;QD=25.27;ReadPosRankSum=1.683;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3589,372,0 chrIV 605312 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2512,246,0 chrIV 605501 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=93;Dels=0.00;FS=3.045;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-2.071;QD=23.45;ReadPosRankSum=2.342;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,89:93:99:2214,231,0 chrIV 605558 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.78;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2362,243,0 chrIV 605615 . G C 2477 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.82;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2510,258,0 chrIV 605618 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.51;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2478,249,0 chrIV 605973 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1987;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.69;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2211,216,0 chrIV 605980 . G C 2124 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.24;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2157,219,0 chrIV 606896 . T C 2071 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.2968;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.27;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2104,222,0 chrIV 606952 . T G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=6.792;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.806;QD=23.29;ReadPosRankSum=1.611;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2036,207,0 chrIV 607313 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=26.68;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2514,246,0 chrIV 607474 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2989,298,0 chrIV 607973 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.52;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3471,346,0 chrIV 608132 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=23.29;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3610,379,0 chrIV 608224 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.324;QD=25.41;ReadPosRankSum=1.591;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3159,324,0 chrIV 608333 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=21.91;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2443,249,0 chrIV 608348 . T A 2489 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=22.22;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2522,255,0 chrIV 608350 . T C 2380 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.696;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=-1.341;QD=20.70;ReadPosRankSum=1.702;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2413,249,0 chrIV 608354 . G A 2330 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=20.26;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2363,243,0 chrIV 608390 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.912;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.010;QD=18.39;ReadPosRankSum=1.696;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1817,189,0 chrIV 608456 . T G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.247;QD=25.29;ReadPosRankSum=1.677;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3220,339,0 chrIV 608522 . T A 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.087;QD=25.42;ReadPosRankSum=1.682;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3533,361,0 chrIV 608546 . A G 2810 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.61;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2843,297,0 chrIV 608616 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=27.83;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3979,394,0 chrIV 608768 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.346;QD=25.33;ReadPosRankSum=1.655;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3420,352,0 chrIV 608921 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.16;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2739,276,0 chrIV 609172 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3218,325,0 chrIV 609209 . A T 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.665;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.8485;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.144;QD=24.98;ReadPosRankSum=-1.253;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3972,386,0 chrIV 609437 . T C 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=207;Dels=0.00;FS=3.247;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.912;QD=24.19;ReadPosRankSum=1.715;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5007,514,0 chrIV 609602 . A T 3094 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3127,310,0 chrIV 609926 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=177;Dels=0.00;FS=10.924;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.527;QD=22.84;ReadPosRankSum=3.670;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:4043,421,0 chrIV 609953 . T G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9419;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.27;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4142,433,0 chrIV 610570 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3913,388,0 chrIV 610717 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.01;FS=6.784;HaplotypeScore=17.7064;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.847;QD=23.36;ReadPosRankSum=2.389;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3808,397,0 chrIV 610801 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5980;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.576;QD=24.73;ReadPosRankSum=1.634;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4426,454,0 chrIV 610896 . G A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=25.60;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5300,520,0 chrIV 610920 . A G 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.990;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.043;QD=24.04;ReadPosRankSum=1.715;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4904,505,0 chrIV 611056 . A G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=2.946;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.242;QD=26.66;ReadPosRankSum=2.400;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:5278,535,0 chrIV 611082 . G C 4455.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=22.39;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4455,466,0 chrIV 611092 . G A 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.01;FS=3.748;HaplotypeScore=6.6600;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=1.516;QD=22.63;ReadPosRankSum=1.263;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4413,442,0 chrIV 611095 . A T 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=7.6950;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=0.357;QD=22.83;ReadPosRankSum=1.679;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4451,442,0 chrIV 611172 . T A 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.560;QD=20.79;ReadPosRankSum=2.399;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4054,403,0 chrIV 611178 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=6.803;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=1.119;QD=19.95;ReadPosRankSum=2.424;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3850,403,0 chrIV 611253 . G T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7560;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.64;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4397,433,0 chrIV 611282 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.90;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:4589,472,0 chrIV 611584 . A T 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=183;Dels=0.00;FS=3.005;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.027;QD=25.09;ReadPosRankSum=2.329;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4591,463,0 chrIV 611602 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.28;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4121,421,0 chrIV 611678 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0096;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=26.74;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4786,481,0 chrIV 611706 . A G 4932.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=26.95;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4932,511,0 chrIV 611871 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.50;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3095,310,0 chrIV 611969 . G C 1311 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;QD=18.46;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1344,144,0 chrIV 612078 . C T 731 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.15;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:764,75,0 chrIV 612085 . A G 702 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.50;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:735,75,0 chrIV 612294 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7753;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.15;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2086,213,0 chrIV 612323 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7963;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.86;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1839,183,0 chrIV 612573 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.48;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3283,328,0 chrIV 612828 . G T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.32;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3688,370,0 chrIV 613152 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.93;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1349,141,0 chrIV 613325 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=61.50;MQ0=0;MQRankSum=-0.412;QD=23.35;ReadPosRankSum=2.364;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1364,144,0 chrIV 613362 . T C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.300;QD=25.66;ReadPosRankSum=2.340;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2342,243,0 chrIV 613386 . T G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0800;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.801;QD=25.43;ReadPosRankSum=1.695;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2398,249,0 chrIV 613520 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.352;QD=26.43;ReadPosRankSum=1.542;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4334,445,0 chrIV 613630 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.86;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3801,391,0 chrIV 613738 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8595;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.83;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2991,295,0 chrIV 613744 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.972;DP=143;Dels=0.00;FS=10.394;HaplotypeScore=6.2989;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-1.193;QD=20.52;ReadPosRankSum=3.690;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:6,137:143:99:2968,312,0 chrIV 613810 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=4.075;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.105;QD=20.10;ReadPosRankSum=1.642;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2385,246,0 chrIV 613813 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.62;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2584,267,0 chrIV 613999 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=24.57;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3006,295,0 chrIV 614005 . G C 2771 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=23.29;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2804,288,0 chrIV 614045 . G T 3024 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=22.74;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3057,306,0 chrIV 614064 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=20.20;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2599,267,0 chrIV 614065 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=19.33;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2488,264,0 chrIV 614093 . T C 2920 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.71;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2953,309,0 chrIV 614205 . G T 2350 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.56;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2383,249,0 chrIV 614223 . G T 2377 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6061;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.85;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2410,261,0 chrIV 614280 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=25.01;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3627,373,0 chrIV 614321 . C T 4085.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9229;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=26.35;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4085,409,0 chrIV 614483 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.96;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4386,460,0 chrIV 614534 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=198;Dels=0.00;FS=3.055;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.043;QD=23.10;ReadPosRankSum=1.714;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4574,478,0 chrIV 614618 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4633,475,0 chrIV 614940 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=193;Dels=0.00;FS=5.793;HaplotypeScore=21.3189;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.984;QD=22.14;ReadPosRankSum=2.963;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4273,439,0 chrIV 615095 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2277;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.98;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3516,364,0 chrIV 615114 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0538;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.46;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3477,343,0 chrIV 615161 . T A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.04;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4014,400,0 chrIV 615243 . A G 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.609;QD=22.68;ReadPosRankSum=1.701;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2550,267,0 chrIV 615247 . T C 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-1.605;QD=22.72;ReadPosRankSum=1.637;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2532,261,0 chrIV 615258 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=22.94;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2442,246,0 chrIV 615413 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.07;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3995,418,0 chrIV 615437 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.34;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3291,342,0 chrIV 615449 . A T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=25.75;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3348,331,0 chrIV 615581 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.20;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3830,379,0 chrIV 615630 . A C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.307;QD=24.03;ReadPosRankSum=1.708;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3388,349,0 chrIV 615694 . G T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=26.74;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3556,349,0 chrIV 615735 . C G 3186 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.78;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3219,334,0 chrIV 615758 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=127;Dels=0.00;FS=2.594;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.579;QD=24.13;ReadPosRankSum=2.897;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3097,316,0 chrIV 615816 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.36;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3898,388,0 chrIV 615975 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.82;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5386,526,0 chrIV 616214 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.7893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3448,340,0 chrIV 616434 . C T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.6161;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.65;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5464,562,0 chrIV 616559 . G A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.44;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4376,433,0 chrIV 616624 . G T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.44;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4664,466,0 chrIV 616689 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=12.939;HaplotypeScore=18.8486;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.617;QD=23.26;ReadPosRankSum=2.411;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4419,457,0 chrIV 616883 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2231,231,0 chrIV 617153 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=151;Dels=0.00;FS=8.150;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.958;QD=24.06;ReadPosRankSum=2.417;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3633,373,0 chrIV 617367 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.74;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2816,280,0 chrIV 617371 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.64;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2763,282,0 chrIV 617421 . A C 2520 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.26;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2553,261,0 chrIV 617800 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.43;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4194,424,0 chrIV 617915 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4005,394,0 chrIV 618001 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.51;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4388,451,0 chrIV 618471 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3070,304,0 chrIV 618809 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.02;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4606,463,0 chrIV 619185 . T G 2441 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.04;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2474,252,0 chrIV 619315 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.095;HaplotypeScore=21.2629;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.419;QD=24.59;ReadPosRankSum=1.710;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3836,388,0 chrIV 619433 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=24.30;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3095,307,0 chrIV 619442 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=-0.836;QD=22.64;ReadPosRankSum=1.672;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2705,279,0 chrIV 619456 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.66;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2784,291,0 chrIV 619470 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.252;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.351;QD=22.63;ReadPosRankSum=1.685;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3349,337,0 chrIV 619532 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=6.237;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.713;QD=22.61;ReadPosRankSum=2.415;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3269,328,0 chrIV 619600 . T G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.63;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3460,358,0 chrIV 619621 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=23.54;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3743,376,0 chrIV 619697 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=24.69;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2947,300,0 chrIV 619698 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=25.97;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3098,301,0 chrIV 619743 . G T 2845 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.40;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2878,288,0 chrIV 619809 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.43;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2681,268,0 chrIV 619843 . T C 2684 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=24.40;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2717,279,0 chrIV 619883 . A G 1955 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=23.84;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1988,210,0 chrIV 619900 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=21.65;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1592,168,0 chrIV 619930 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=18.75;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1308,132,0 chrIV 619942 . A T 1113 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=17.67;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1146,117,0 chrIV 619943 . A C 1111 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=17.63;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1144,117,0 chrIV 620075 . T G 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=63;Dels=0.00;FS=2.894;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=0.176;QD=14.25;ReadPosRankSum=2.372;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:931,99,0 chrIV 620079 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=15.49;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1040,108,0 chrIV 620087 . A G 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.789;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;MQRankSum=-1.370;QD=15.70;ReadPosRankSum=1.629;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1085,114,0 chrIV 620103 . C T 1122 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;QD=15.16;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1155,117,0 chrIV 620106 . A G 1151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=71;Dels=0.00;FS=14.317;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;MQRankSum=0.212;QD=16.21;ReadPosRankSum=3.329;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1184,120,0 chrIV 620108 . T C 1046 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=14.33;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1079,111,0 chrIV 620254 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=26.40;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2779,271,0 chrIV 620281 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=25.39;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2928,298,0 chrIV 620379 . A G 2626 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.8485;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.45;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2659,270,0 chrIV 620486 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.36;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2553,250,0 chrIV 620530 . G T 3146 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.70;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3179,310,0 chrIV 620554 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=0.153;QD=19.36;ReadPosRankSum=1.685;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2879,291,0 chrIV 620561 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=17.65;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2592,264,0 chrIV 620565 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.722;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=-1.283;QD=18.25;ReadPosRankSum=1.707;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2570,264,0 chrIV 620832 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.25;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1451,153,0 chrIV 620864 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1457,150,0 chrIV 620963 . A G 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.369;QD=21.62;ReadPosRankSum=2.317;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:2,35:37:87:833,87,0 chrIV 621009 . T C 406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.157;QD=15.04;ReadPosRankSum=2.268;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:45:439,45,0 chrIV 621258 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.13;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4913,484,0 chrIV 621350 . T C 5120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=3.052;HaplotypeScore=11.3617;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.254;QD=24.15;ReadPosRankSum=1.699;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5120,529,0 chrIV 621542 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.10;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3580,352,0 chrIV 621550 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.70;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3092,316,0 chrIV 621579 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.88;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2538,261,0 chrIV 621690 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=7.543;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.432;QD=24.58;ReadPosRankSum=2.411;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3179,322,0 chrIV 621798 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.23;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3212,313,0 chrIV 622375 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.268;QD=25.37;ReadPosRankSum=1.696;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2494,252,0 chrIV 622891 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3632,355,0 chrIV 623053 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.2326;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.31;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3473,352,0 chrIV 623197 . T C 4865.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4865,502,0 chrIV 623798 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=121;Dels=0.00;FS=3.044;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.548;QD=22.52;ReadPosRankSum=2.408;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2758,282,0 chrIV 623886 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.28;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4073,406,0 chrIV 623966 . C A 3134 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.11;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3167,333,0 chrIV 624268 . G A 5017.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.21;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:5017,505,0 chrIV 624319 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=210;Dels=0.00;FS=7.346;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.088;QD=23.09;ReadPosRankSum=2.309;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4848,511,0 chrIV 624583 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=133;Dels=0.00;FS=6.101;HaplotypeScore=8.8653;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.584;QD=25.74;ReadPosRankSum=2.932;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3424,355,0 chrIV 624722 . T G 2338 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.15;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2371,246,0 chrIV 624733 . G T 2341 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=24.39;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2374,246,0 chrIV 624920 . T G 3196 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=134.3560;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.35;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3229,325,0 chrIV 624930 . T C 3190 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=137.8516;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.70;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3223,322,0 chrIV 624969 . T G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.034;QD=21.76;ReadPosRankSum=1.665;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3416,355,0 chrIV 625173 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.435;QD=23.95;ReadPosRankSum=1.668;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3951,412,0 chrIV 625250 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.07;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4044,403,0 chrIV 625405 . A C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.94;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3708,376,0 chrIV 625729 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.61;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4363,451,0 chrIV 627107 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.14;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4126,418,0 chrIV 627839 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.077;QD=22.90;ReadPosRankSum=2.155;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3572,353,0 chrIV 627887 . T C 2625 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.17;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2658,273,0 chrIV 627941 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.263;QD=23.17;ReadPosRankSum=1.704;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2953,298,0 chrIV 628785 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.358;QD=25.40;ReadPosRankSum=2.372;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3259,334,0 chrIV 628877 . G C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=25.17;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3348,346,0 chrIV 628915 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.85;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3728,361,0 chrIV 628955 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.86;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3338,346,0 chrIV 629029 . T G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.736;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.249;QD=21.40;ReadPosRankSum=1.704;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2644,273,0 chrIV 629055 . C T 2703 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.71;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2736,276,0 chrIV 629111 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.34;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2669,262,0 chrIV 629117 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.51;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2509,247,0 chrIV 629128 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.441;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.242;QD=20.73;ReadPosRankSum=1.699;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2230,225,0 chrIV 629487 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2237,222,0 chrIV 629532 . G C 2218 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.20;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2251,234,0 chrIV 629595 . T A 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.8056;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.400;QD=24.74;ReadPosRankSum=1.704;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3126,327,0 chrIV 629725 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3223,345,0 chrIV 630675 . A C 16.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=69.4155;MLEAC=1;MLEAF=0.500;MQ=49.05;MQ0=0;MQRankSum=2.167;QD=0.24;ReadPosRankSum=-1.741;SB=-4.114e+00 GT:AD:DP:GQ:PL 0/1:55,12:67:13:46,0,13 chrIV 632423 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=153;Dels=0.00;FS=2.563;HaplotypeScore=11.9219;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.151;QD=25.31;ReadPosRankSum=2.954;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3872,403,0 chrIV 632469 . T A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3847,385,0 chrIV 634669 . A C 7139.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:0,269:273:99:7139,730,0 chrIV 634839 . T C 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=242;Dels=0.00;FS=4.117;HaplotypeScore=17.9983;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.260;QD=21.24;ReadPosRankSum=1.703;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5140,558,0 chrIV 636089 . C A 6518.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.65;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6518,643,0 chrIV 636237 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2288;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.69;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4903,537,0 chrIV 636391 . A T 5779.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=24.0090;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.46;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5779,577,0 chrIV 636465 . A C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.886;QD=23.96;ReadPosRankSum=1.692;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4169,439,0 chrIV 636564 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.02;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4423,430,0 chrIV 636673 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.024;QD=26.15;ReadPosRankSum=1.673;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4602,469,0 chrIV 636737 . A T 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=6.898;HaplotypeScore=11.7663;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.323;QD=25.88;ReadPosRankSum=2.415;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3649,367,0 chrIV 637663 . A T 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=7.095;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.148;QD=25.32;ReadPosRankSum=2.381;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2768,274,0 chrIV 638634 . G A 4917.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.88;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4917,487,0 chrIV 638815 . C T 8759.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=19.8257;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,336:340:99:8759,889,0 chrIV 641150 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.6915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3572,364,0 chrIV 643795 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.75;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2883,286,0 chrIV 643973 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2686,265,0 chrIV 644081 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.408;QD=23.86;ReadPosRankSum=1.698;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2467,252,0 chrIV 644629 . T A 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.740;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=23.69;ReadPosRankSum=1.683;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3316,337,0 chrIV 645246 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9833;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=1;QD=17.87;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1141,132,0 chrIV 651528 . A G 227.01 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.11;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,73:73:27:260,27,0 chrIV 651534 . T A 251 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.170;QD=3.39;ReadPosRankSum=1.685;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,73:74:30:284,30,0 chrIV 651540 . C A 297 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.13;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,72:72:33:330,33,0 chrIV 651580 . C T 840 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=10.24;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:84:873,84,0 chrIV 651590 . C T 1100 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3092;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=13.58;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1133,117,0 chrIV 651672 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=26.84;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4106,406,0 chrIV 651714 . G C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=25.03;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3755,393,0 chrIV 651778 . C A 2336 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=23.84;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2369,243,0 chrIV 651813 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.46;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2821,280,0 chrIV 651881 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.52;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3146,313,0 chrIV 651974 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=26.37;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2143,210,0 chrIV 652069 . A T 3074 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=24.02;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3107,310,0 chrIV 652106 . C A 2508 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=19.90;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2541,270,0 chrIV 652118 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=17.76;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2271,231,0 chrIV 652176 . A C 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;MQRankSum=-1.054;QD=13.43;ReadPosRankSum=1.707;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1886,192,0 chrIV 652186 . G C 1826 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=13.33;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1859,186,0 chrIV 652203 . A T 1665 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=12.71;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1698,174,0 chrIV 652205 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=137;Dels=0.00;FS=6.246;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=1.355;QD=13.58;ReadPosRankSum=2.414;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:1893,195,0 chrIV 652260 . A T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.995;QD=21.29;ReadPosRankSum=1.708;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3035,301,0 chrIV 652321 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=24.89;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3733,376,0 chrIV 653063 . A G 2866 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6345;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.92;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2899,295,0 chrIV 653150 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=26.42;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2569,250,0 chrIV 653208 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.32;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3343,328,0 chrIV 653246 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=5.278;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=23.36;ReadPosRankSum=1.703;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2813,294,0 chrIV 653323 . T G 1630 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.31;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1663,171,0 chrIV 653336 . C T 1059 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.04;FS=0.000;HaplotypeScore=8.4001;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=13.07;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1092,105,0 chrIV 653406 . T A 1354 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6951;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.83;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1387,141,0 chrIV 655714 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.31;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2737,276,0 chrIV 656349 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=6.198;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.803;QD=24.24;ReadPosRankSum=2.410;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3063,315,0 chrIV 656379 . A G 2776 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=23.13;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2809,280,0 chrIV 656388 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=21.88;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2855,297,0 chrIV 656583 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=25.24;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4568,469,0 chrIV 656607 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=208;Dels=0.00;FS=2.887;HaplotypeScore=3.5052;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.127;QD=20.28;ReadPosRankSum=2.402;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4219,433,0 chrIV 656613 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.28;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4259,424,0 chrIV 656691 . A G 5778.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.98;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5778,601,0 chrIV 656736 . T C 5608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.073;QD=23.46;ReadPosRankSum=1.703;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5608,592,0 chrIV 656959 . A G 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.9545;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.625;QD=24.69;ReadPosRankSum=1.717;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5629,574,0 chrIV 657111 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3837,379,0 chrIV 657366 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.88;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2673,268,0 chrIV 657792 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.822;QD=24.29;ReadPosRankSum=1.703;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2899,297,0 chrIV 657884 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=26.53;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2845,280,0 chrIV 658436 . T G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.172;QD=24.82;ReadPosRankSum=1.697;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2540,264,0 chrIV 658469 . T C 2929 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.25;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2962,303,0 chrIV 658478 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.90;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3274,322,0 chrIV 658643 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.22;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4117,400,0 chrIV 658682 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.59;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3320,342,0 chrIV 658775 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.56;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3954,394,0 chrIV 659042 . A T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3584,355,0 chrIV 659198 . G T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.35;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3385,337,0 chrIV 659402 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.52;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3625,381,0 chrIV 659467 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.48;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3015,309,0 chrIV 659689 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1705;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.636;QD=26.23;ReadPosRankSum=1.682;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3699,376,0 chrIV 659912 . G C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.37;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:4118,438,0 chrIV 659970 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=26.39;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5199,538,0 chrIV 660025 . G C 4300.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.00;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4300,442,0 chrIV 660107 . C T 4416.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=26.76;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4416,436,0 chrIV 660131 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.28;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4373,457,0 chrIV 660155 . T A 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=182;Dels=0.00;FS=15.521;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.641;QD=26.00;ReadPosRankSum=2.928;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4732,481,0 chrIV 660197 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=26.69;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3977,403,0 chrIV 660237 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.34;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3021,306,0 chrIV 660248 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.710;QD=21.54;ReadPosRankSum=1.647;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2683,273,0 chrIV 660411 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.239;QD=25.93;ReadPosRankSum=1.672;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3041,310,0 chrIV 660498 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=152;Dels=0.00;FS=6.286;HaplotypeScore=14.3399;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.877;QD=23.82;ReadPosRankSum=2.384;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3620,378,0 chrIV 660681 . C G 4755.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.13;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4755,484,0 chrIV 660748 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.74;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4008,415,0 chrIV 660773 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.163;QD=23.05;ReadPosRankSum=1.613;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3365,351,0 chrIV 660788 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=2.970;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.017;QD=22.22;ReadPosRankSum=2.401;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3377,346,0 chrIV 660950 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=12.4672;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=24.53;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3729,391,0 chrIV 661137 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.079;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.974;QD=24.78;ReadPosRankSum=1.705;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3205,328,0 chrIV 661159 . G T 2898 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.85;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2931,286,0 chrIV 661166 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.07;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2863,285,0 chrIV 661181 . T C 2808 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=18.97;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2841,285,0 chrIV 661358 . A T 5936.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.8979;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=25.92;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5936,595,0 chrIV 661542 . C T 6556.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.28;SB=-3.874e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6556,652,0 chrIV 661608 . A G 6398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.1222;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.415;QD=24.14;ReadPosRankSum=1.692;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,261:265:99:6398,643,0 chrIV 662283 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=7.427;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.610;QD=22.44;ReadPosRankSum=2.356;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2995,315,0 chrIV 662378 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3672,382,0 chrIV 662835 . T C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=5.921;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.564;QD=21.83;ReadPosRankSum=1.692;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1932,189,0 chrIV 662953 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.87;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2371,237,0 chrIV 664414 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.0760;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.40;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3722,367,0 chrIV 666471 . C T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4247,427,0 chrIV 666793 . T G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.6608;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.19;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3412,352,0 chrIV 668101 . T A 2841 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=2;QD=21.04;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2874,286,0 chrIV 668118 . T C 2621 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=8;QD=22.21;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:8,109:118:99:2654,276,0 chrIV 668204 . A C 205.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.30;MQ0=3;MQRankSum=-2.418;QD=2.56;ReadPosRankSum=2.386;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:2,78:80:27:238,27,0 chrIV 668207 . G T 180.03 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.91;MQ0=2;QD=2.22;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:1,80:81:24:213,24,0 chrIV 668232 . C A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.13;MQ0=2;QD=0.34;SB=-9.377e+01 GT:AD:DP:GQ:PL 1/1:1,86:87:6:61,6,0 chrIV 668243 . T C 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=13.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=2;MQRankSum=0.087;QD=9.44;ReadPosRankSum=1.689;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,81:82:81:807,81,0 chrIV 668687 . A T 196.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-5.591e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:229,24,0 chrIV 669690 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=17.7885;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.20;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:4009,415,0 chrIV 671037 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.13;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3820,376,0 chrIV 671820 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=3.656;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.183;QD=23.98;ReadPosRankSum=1.676;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:3030,312,0 chrIV 674519 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=3.001;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.885;QD=25.03;ReadPosRankSum=2.350;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3730,382,0 chrIV 678135 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.59;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1385,135,0 chrIV 678773 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.65;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4771,481,0 chrIV 680244 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.80;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3594,381,0 chrIV 680252 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=24.17;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3625,367,0 chrIV 680423 . A G 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=202;Dels=0.00;FS=9.139;HaplotypeScore=21.0643;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.419;QD=24.90;ReadPosRankSum=3.382;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:4,198:202:99:5030,520,0 chrIV 680477 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=211;Dels=0.00;FS=12.512;HaplotypeScore=10.7440;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.498;QD=24.15;ReadPosRankSum=2.967;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:5096,538,0 chrIV 680490 . G C 4844.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=24.34;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4844,502,0 chrIV 680521 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.448;QD=23.53;ReadPosRankSum=1.681;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4824,493,0 chrIV 681251 . G A 5482.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=27.55;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5482,541,0 chrIV 681304 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.5874;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.33;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5041,499,0 chrIV 681327 . T G 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.235;QD=24.66;ReadPosRankSum=1.678;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4734,490,0 chrIV 683918 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.28;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2024,201,0 chrIV 685659 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4502,466,0 chrIV 687632 . G A 5581.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5581,550,0 chrIV 688083 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.577;QD=16.95;ReadPosRankSum=1.688;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1372,150,0 chrIV 689337 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8459;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.77;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3393,354,0 chrIV 689618 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.366;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.662;QD=23.35;ReadPosRankSum=1.693;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4179,433,0 chrIV 690684 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=4.157;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.014;QD=22.73;ReadPosRankSum=1.566;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2897,309,0 chrIV 691402 . T A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=2.13;ReadPosRankSum=0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:6:46,6,0 chrIV 691713 . C T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4836,475,0 chrIV 691930 . T A 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=194;Dels=0.00;FS=6.601;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=24.50;ReadPosRankSum=2.336;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4753,493,0 chrIV 692033 . T C 5895.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=20.2529;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.87;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5895,601,0 chrIV 692593 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=214;Dels=0.00;FS=3.019;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.536;QD=23.55;ReadPosRankSum=2.369;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:5039,526,0 chrIV 694033 . T C 6450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=254;Dels=0.00;FS=5.965;HaplotypeScore=20.1974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.679;QD=25.39;ReadPosRankSum=2.941;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:6450,673,0 chrIV 695620 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3530,363,0 chrIV 696696 . A C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.528;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.711;QD=25.34;ReadPosRankSum=1.710;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4004,409,0 chrIV 697118 . A G 4873.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4873,505,0 chrIV 700621 . G C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.32;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,138:144:99:3358,346,0 chrIV 703386 . G C 5193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.0234;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.121;QD=24.15;ReadPosRankSum=0.346;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5193,526,0 chrIV 703521 . G A 6927.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.3115;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.85;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6927,697,0 chrIV 705139 . C A 5354.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5354,538,0 chrIV 706032 . T C 7199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=292;Dels=0.00;FS=4.290;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.374;QD=24.65;ReadPosRankSum=1.720;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:7199,727,0 chrIV 707926 . C T 5448.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.11;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5448,532,0 chrIV 708514 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.387;QD=23.24;ReadPosRankSum=1.696;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4508,460,0 chrIV 709553 . G T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3505,346,0 chrIV 710109 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9853;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.16;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4725,481,0 chrIV 710130 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.9223;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.58;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5285,523,0 chrIV 710371 . A G 4657.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.52;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4657,469,0 chrIV 710388 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=201;Dels=0.00;FS=10.118;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.035;QD=21.47;ReadPosRankSum=2.945;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4316,451,0 chrIV 710996 . T C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=128;Dels=0.00;FS=2.916;HaplotypeScore=10.4390;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.432;QD=24.37;ReadPosRankSum=2.411;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3153,324,0 chrIV 713336 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5331;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.77;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3298,342,0 chrIV 714288 . C G 3937.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.0969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3937,420,0 chrIV 714933 . T C 6168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.746;DP=257;Dels=0.00;FS=15.657;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.510;QD=24.00;ReadPosRankSum=3.746;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:5,252:257:99:6168,628,0 chrIV 717377 . G C 2602 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.51;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2635,270,0 chrIV 717840 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.57;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4102,412,0 chrIV 719380 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.44;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3300,337,0 chrIV 719391 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.439;QD=24.70;ReadPosRankSum=1.706;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3335,337,0 chrIV 719554 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.39;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3758,370,0 chrIV 719695 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.06;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3215,333,0 chrIV 719745 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=15.8934;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.970;QD=24.06;ReadPosRankSum=2.350;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3016,304,0 chrIV 719860 . C G 3201 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.07;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3234,339,0 chrIV 719959 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6110;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.38;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3104,310,0 chrIV 720061 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.581;QD=24.70;ReadPosRankSum=2.412;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3219,333,0 chrIV 720439 . T A 2730 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.37;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2763,282,0 chrIV 720440 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.37;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2702,282,0 chrIV 720645 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.61;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2174,225,0 chrIV 720763 . G T 1533 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=23.95;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1566,156,0 chrIV 720993 . C G 1137 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=27.73;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1170,120,0 chrIV 721110 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.27;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3567,352,0 chrIV 721119 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.909;QD=22.32;ReadPosRankSum=0.974;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3594,370,0 chrIV 721283 . A G 6536.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.6084;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.95;SB=-3.646e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6536,679,0 chrIV 722011 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.40;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5690,595,0 chrIV 722058 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.72;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4296,421,0 chrIV 722085 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.417;QD=24.27;ReadPosRankSum=1.675;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2970,306,0 chrIV 722265 . A G 861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;DP=54;Dels=0.00;FS=11.222;HaplotypeScore=12.9928;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=0.686;QD=15.94;ReadPosRankSum=1.144;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,52:54:93:894,93,0 chrIV 722306 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.63;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1655,165,0 chrIV 722348 . A G 1777 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1810,183,0 chrIV 722407 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.06;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1388,141,0 chrIV 722460 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=27.39;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3287,325,0 chrIV 722585 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=27.23;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4955,499,0 chrIV 722672 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=190;Dels=0.00;FS=2.876;HaplotypeScore=14.3454;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.953;QD=25.93;ReadPosRankSum=2.423;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4927,505,0 chrIV 722772 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.81;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3288,351,0 chrIV 722776 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-2.440;QD=20.14;ReadPosRankSum=3.384;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3282,339,0 chrIV 722840 . A C 2355 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.84;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2388,252,0 chrIV 722940 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=17.7426;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=11.30;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:57:553,57,0 chrIV 723133 . G A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.31;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4809,502,0 chrIV 723157 . C T 4876.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.58;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4876,490,0 chrIV 723163 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.3489;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.01;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4582,481,0 chrIV 723345 . G A 6845.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=24.0061;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.36;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6845,676,0 chrIV 723847 . C T 4773.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.12;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4773,475,0 chrIV 724081 . G A 7542.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=22.5293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.92;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:7542,754,0 chrIV 724549 . A C 4474.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.32;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4474,454,0 chrIV 724570 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.528;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.798;QD=24.13;ReadPosRankSum=1.654;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4343,448,0 chrIV 724610 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.41;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4827,484,0 chrIV 724885 . C A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.15;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:4323,439,0 chrIV 725095 . G A 5785.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.9018;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.71;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5785,580,0 chrIV 725245 . C T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.54;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5768,580,0 chrIV 725461 . T C 5164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.411;HaplotypeScore=9.9416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.375;QD=25.07;ReadPosRankSum=1.715;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:5164,541,0 chrIV 726762 . C G 3587.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.99;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3587,373,0 chrIV 727008 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5946;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.89;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3345,348,0 chrIV 727318 . T A 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.973;QD=24.95;ReadPosRankSum=1.661;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3643,364,0 chrIV 727626 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.314;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.287;QD=25.25;ReadPosRankSum=1.668;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4141,430,0 chrIV 727685 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.242;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.245;QD=24.36;ReadPosRankSum=1.706;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3289,345,0 chrIV 728391 . C A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.73;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4891,481,0 chrIV 728470 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.013;QD=25.62;ReadPosRankSum=1.675;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4765,496,0 chrIV 728918 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.67;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3113,304,0 chrIV 728966 . A C 2324 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.46;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2357,240,0 chrIV 729030 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2078,207,0 chrIV 729266 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.39;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2518,258,0 chrIV 729398 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.600;QD=27.33;ReadPosRankSum=1.663;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:4099,427,0 chrIV 729422 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.49;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3824,405,0 chrIV 729752 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=3.979;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.799;QD=25.80;ReadPosRankSum=1.705;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3406,349,0 chrIV 730077 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.70;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3118,318,0 chrIV 730085 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.277;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.034;QD=21.83;ReadPosRankSum=1.709;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3297,340,0 chrIV 730340 . G A 4446.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.70;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4446,439,0 chrIV 730611 . A C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.010;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.291;QD=24.90;ReadPosRankSum=1.701;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2772,282,0 chrIV 730704 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.55;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2281,234,0 chrIV 730734 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.40;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,78:81:99:2009,204,0 chrIV 731928 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.698;QD=26.30;ReadPosRankSum=1.698;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2716,279,0 chrIV 732240 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=27.39;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3183,316,0 chrIV 732272 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.733;QD=23.51;ReadPosRankSum=1.670;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2666,279,0 chrIV 732994 . C G 3155 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3188,330,0 chrIV 733047 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3716,370,0 chrIV 733147 . G T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.64;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3897,385,0 chrIV 733614 . G C 2330 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.53;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2363,240,0 chrIV 733663 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.65;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3770,367,0 chrIV 734411 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.69;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4008,406,0 chrIV 734832 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.22;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1671,189,0 chrIV 734833 . A T 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.555;QD=16.26;ReadPosRankSum=1.463;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1708,189,0 chrIV 735360 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3972,406,0 chrIV 735402 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3850,391,0 chrIV 735567 . A T 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=3.033;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.345;QD=24.98;ReadPosRankSum=2.349;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3647,358,0 chrIV 735825 . A G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.383;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.117;QD=26.34;ReadPosRankSum=1.700;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2851,294,0 chrIV 736692 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.12;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3868,382,0 chrIV 736713 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.96;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3833,394,0 chrIV 736769 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5215;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.08;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3708,367,0 chrIV 736908 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.945;HaplotypeScore=8.6696;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.425;QD=25.89;ReadPosRankSum=1.704;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3243,331,0 chrIV 738672 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.48;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2759,285,0 chrIV 738776 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.94;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3372,340,0 chrIV 739050 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.83;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2928,309,0 chrIV 739056 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.14;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2950,298,0 chrIV 740178 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.52;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3109,316,0 chrIV 740249 . T A 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.377;QD=25.17;ReadPosRankSum=1.694;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2349,237,0 chrIV 740275 . T A 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.694;QD=26.96;ReadPosRankSum=1.617;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2459,238,0 chrIV 740635 . T G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3436,349,0 chrIV 740795 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.45;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4100,421,0 chrIV 741444 . C G 4215.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.65;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4215,436,0 chrIV 741699 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.41;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2842,291,0 chrIV 741737 . A T 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.712;QD=23.88;ReadPosRankSum=2.895;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1633,162,0 chrIV 741803 . G C 1104 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1137,120,0 chrIV 741894 . A G 534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.277;QD=14.05;ReadPosRankSum=1.641;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:60:567,60,0 chrIV 742728 . C T 4799.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.12;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4799,499,0 chrIV 743645 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4090,412,0 chrIV 743850 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.52;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2460,252,0 chrIV 744041 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.65;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1594,165,0 chrIV 744157 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=23.71;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1645,171,0 chrIV 744159 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=2.653;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-0.617;QD=22.60;ReadPosRankSum=2.380;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1615,168,0 chrIV 744174 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=22.08;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1689,174,0 chrIV 744206 . A G 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=91;Dels=0.00;FS=5.344;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-1.226;QD=18.92;ReadPosRankSum=1.693;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1755,183,0 chrIV 744218 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=21.76;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2231,225,0 chrIV 744290 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=0.212;QD=22.93;ReadPosRankSum=1.707;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3220,342,0 chrIV 744306 . A C 2941 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=21.62;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2974,312,0 chrIV 744309 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=141;Dels=0.00;FS=2.590;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;MQRankSum=-0.564;QD=20.55;ReadPosRankSum=2.893;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2931,289,0 chrIV 744344 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=19.62;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2898,309,0 chrIV 744456 . G T 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=175;Dels=0.00;FS=10.213;HaplotypeScore=3.5179;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.624;QD=21.22;ReadPosRankSum=2.382;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3714,393,0 chrIV 744457 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=177;Dels=0.00;FS=20.341;HaplotypeScore=4.3066;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=1.031;QD=20.34;ReadPosRankSum=3.828;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:6,170:177:99:3600,390,0 chrIV 744475 . T A 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.389;QD=22.74;ReadPosRankSum=1.713;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4047,411,0 chrIV 744529 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.441;QD=19.03;ReadPosRankSum=2.424;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:3653,378,0 chrIV 744534 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.245;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.492;QD=18.81;ReadPosRankSum=1.714;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3593,375,0 chrIV 745766 . G A 5775.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.8768;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.25;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5775,568,0 chrIV 745886 . C T 5035.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.69;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5035,514,0 chrIV 745916 . C T 5161.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.30;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5161,535,0 chrIV 745998 . A T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.6631;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.77;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4459,442,0 chrIV 746167 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.98;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3246,316,0 chrIV 746186 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.36;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3271,319,0 chrIV 746550 . A C 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=3.563;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.033;QD=26.52;ReadPosRankSum=1.710;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4296,439,0 chrIV 747029 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=4.260;HaplotypeScore=12.6795;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;MQRankSum=-0.669;QD=20.24;ReadPosRankSum=1.693;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3644,370,0 chrIV 747352 . G T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=25.85;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3774,385,0 chrIV 747544 . G A 262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=212;Dels=0.00;FS=3.564;HaplotypeScore=9.3981;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;MQRankSum=0.622;QD=1.24;ReadPosRankSum=0.406;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:30:295,30,0 chrIV 747550 . G A 801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.6429;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.505;QD=4.05;ReadPosRankSum=1.382;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:96:834,96,0 chrIV 747674 . A C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.5288;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.423;QD=22.84;ReadPosRankSum=1.612;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4660,472,0 chrIV 747733 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=11.839;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=0.638;QD=22.04;ReadPosRankSum=2.924;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:4363,457,0 chrIV 748054 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.9007;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.15;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4753,472,0 chrIV 748297 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.81;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2057,213,0 chrIV 748461 . G A 59.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:92,9,0 chrIV 748463 . T A 58.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:91,9,0 chrIV 749263 . C T 6092.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.6011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:6092,601,0 chrIV 749441 . C T 6431.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.1884;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.55;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6431,673,0 chrIV 749759 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.267;HaplotypeScore=8.1790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.269;QD=25.47;ReadPosRankSum=1.688;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:4025,415,0 chrIV 749852 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.34;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3424,334,0 chrIV 749897 . T A 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.448;QD=25.90;ReadPosRankSum=1.635;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3704,373,0 chrIV 750050 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.7637;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.98;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:4121,418,0 chrIV 750684 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.49;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3747,382,0 chrIV 750696 . A T 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.235;QD=23.48;ReadPosRankSum=1.687;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3639,361,0 chrIV 750698 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.70;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3674,367,0 chrIV 750778 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=155;Dels=0.00;FS=9.642;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.824;QD=24.45;ReadPosRankSum=2.955;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3789,388,0 chrIV 751203 . C A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.02;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3891,388,0 chrIV 751285 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.2530;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.196;QD=23.33;ReadPosRankSum=1.629;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3966,406,0 chrIV 751326 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.375;QD=23.98;ReadPosRankSum=2.417;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3621,373,0 chrIV 751490 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.06;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4135,438,0 chrIV 751891 . A G 4689.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.4067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4689,475,0 chrIV 752043 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2298,234,0 chrIV 753137 . T A 3164 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=26.37;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3197,319,0 chrIV 753357 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.09;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:852,90,0 chrIV 753375 . G T 726 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.93;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:759,75,0 chrIV 755101 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=4.097;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.859;QD=24.64;ReadPosRankSum=1.679;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3261,342,0 chrIV 755257 . G C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.14;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:3842,400,0 chrIV 755654 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3992,388,0 chrIV 755785 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.45;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4009,409,0 chrIV 755819 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3762,391,0 chrIV 756842 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.44;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2135,213,0 chrIV 756915 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.92;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2521,246,0 chrIV 757202 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.643;QD=23.34;ReadPosRankSum=1.699;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2484,258,0 chrIV 757409 . A T 2407 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;QD=25.61;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2440,240,0 chrIV 757412 . G A 2163 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=24.30;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2196,231,0 chrIV 757414 . A C 2170 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;MQRankSum=-1.653;QD=24.94;ReadPosRankSum=1.692;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2203,225,0 chrIV 757430 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=3;QD=21.11;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1532,162,0 chrIV 757452 . T C 726 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;DP=73;Dels=0.00;FS=28.076;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=24;MQRankSum=3.232;QD=9.95;ReadPosRankSum=2.720;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:20,53:73:78:759,78,0 chrIV 757454 . A G 679 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=74;Dels=0.00;FS=23.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=25;MQRankSum=2.092;QD=9.18;ReadPosRankSum=3.172;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:20,52:74:72:712,72,0 chrIV 757478 . C A 671.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;DP=129;Dels=0.00;FS=134.772;HaplotypeScore=5.1414;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=64;MQRankSum=2.756;QD=5.20;ReadPosRankSum=1.059;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:82,47:129:71:701,0,71 chrIV 757506 . A G 1326 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=80;QD=7.41;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:1359,144,0 chrIV 757508 . G T 1310 filter AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=83;QD=7.12;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,177:184:99:1343,138,0 chrIV 757538 . A G 1101 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=1.9402;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=119;MQRankSum=0.194;QD=4.49;ReadPosRankSum=2.559;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:14,231:245:99:1134,101,0 chrIV 757558 . A G 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;DP=228;Dels=0.00;FS=207.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.51;MQ0=87;MQRankSum=4.769;QD=1.87;ReadPosRankSum=0.392;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:177,51:228:99:457,0,320 chrIV 757564 . C A 922 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.07;MQ0=79;QD=3.94;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,234:234:99:955,102,0 chrIV 757578 . G C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;DP=264;Dels=0.00;FS=218.671;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=19.27;MQ0=64;MQRankSum=2.789;QD=0.64;ReadPosRankSum=-8.280;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:231,33:264:99:199,0,519 chrIV 757601 . A T 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=73.2093;MLEAC=1;MLEAF=0.500;MQ=20.13;MQ0=62;MQRankSum=-4.235;QD=0.56;ReadPosRankSum=0.760;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,198:366:99:235,0,323 chrIV 757602 . C A 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=73.2093;MLEAC=1;MLEAF=0.500;MQ=20.18;MQ0=59;MQRankSum=4.335;QD=0.81;ReadPosRankSum=-0.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,167:362:99:322,0,238 chrIV 757604 . G A 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.763;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=49.0272;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=52;MQRankSum=-3.254;QD=0.38;ReadPosRankSum=2.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,185:368:99:170,0,408 chrIV 757606 . A C 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=48;MQRankSum=-3.561;QD=0.38;ReadPosRankSum=3.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:186,178:364:99:167,0,442 chrIV 757616 . T C 504.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=5.5920;MLEAC=1;MLEAF=0.500;MQ=21.07;MQ0=41;MQRankSum=4.603;QD=1.19;ReadPosRankSum=-2.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,205:424:99:534,0,166 chrIV 757622 . T C 1041 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.204;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=89.4988;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=30;MQRankSum=0.094;QD=2.42;ReadPosRankSum=4.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,423:430:99:1074,120,0 chrIV 757631 . G C,T 1001.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=465;Dels=0.00;FS=0.000;HaplotypeScore=7.5299;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.09;MQ0=42;QD=2.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,324,139:464:99:1061,279,180,782,0,749 chrIV 757635 . A G 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100;DP=507;Dels=0.00;FS=0.000;HaplotypeScore=16.0713;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=51;MQRankSum=-2.983;QD=0.30;ReadPosRankSum=-1.591;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:348,154:507:99:184,0,765 chrIV 757644 . T C 617.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;DP=551;Dels=0.00;FS=5.317;HaplotypeScore=28.2673;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=66;MQRankSum=0.430;QD=1.12;ReadPosRankSum=9.107;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,346:551:99:647,0,859 chrIV 757646 . A G 581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.017;DP=553;Dels=0.00;FS=27.069;HaplotypeScore=21.2351;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=68;MQRankSum=1.497;QD=1.05;ReadPosRankSum=8.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,347:553:99:611,0,1001 chrIV 757663 . A T 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.686;DP=632;Dels=0.00;FS=43.208;HaplotypeScore=170.9614;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=103;MQRankSum=0.964;QD=0.30;ReadPosRankSum=4.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:472,160:632:99:221,0,2890 chrIV 757698 . A G 4369.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.539;DP=533;Dels=0.00;FS=0.000;HaplotypeScore=14.5729;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=96;MQRankSum=-0.729;QD=8.20;ReadPosRankSum=4.490;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:7,524:533:99:4369,465,0 chrIV 757700 . G A,T 3995.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.221;DP=556;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.83;MQ0=103;MQRankSum=-0.758;QD=7.19;ReadPosRankSum=4.078;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/2:7,48,501:556:94:3995,3495,3432,500,0,94 chrIV 757730 . A G 2899.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;DP=624;Dels=0.00;FS=77.557;HaplotypeScore=120.3535;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=145;MQRankSum=-2.112;QD=4.65;ReadPosRankSum=3.207;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:235,389:624:99:2929,0,2381 chrIV 757736 . T C 507.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.692;DP=606;Dels=0.00;FS=45.869;HaplotypeScore=120.5915;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=141;MQRankSum=-3.008;QD=0.84;ReadPosRankSum=1.448;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:387,217:606:99:537,0,4693 chrIV 757750 . A G 6279.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.523;DP=595;Dels=0.00;FS=49.303;HaplotypeScore=22.0718;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=128;MQRankSum=2.488;QD=10.55;ReadPosRankSum=3.276;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:74,512:595:99:6279,571,0 chrIV 757756 . C A 6472.01 filter AC=2;AF=1.00;AN=2;DP=593;Dels=0.00;FS=0.000;HaplotypeScore=27.0472;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=144;QD=10.91;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,580:593:99:6472,681,0 chrIV 757824 . T C 13975.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.094;DP=1000;DS;Dels=0.00;FS=19.048;HaplotypeScore=46.1677;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=105;MQRankSum=-3.391;QD=13.98;ReadPosRankSum=5.021;SB=-6.007e+03 GT:AD:DP:GQ:PL 1/1:10,988:1000:99:13975,1495,0 chrIV 757894 . G A 363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;DP=684;DS;Dels=0.00;FS=11.992;HaplotypeScore=41.1477;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=81;MQRankSum=-2.266;QD=0.53;ReadPosRankSum=2.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:572,108:684:99:393,0,8117 chrIV 757913 . G A,T 10831.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=756;DS;Dels=0.00;FS=0.000;HaplotypeScore=27.7397;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.45;MQ0=70;QD=14.33;SB=-5.269e+03 GT:AD:DP:GQ:PL 1/2:0,145,611:756:99:10831,9183,8970,1649,0,553 chrIV 757937 . T C 8244.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.112;DP=630;DS;Dels=0.00;FS=52.018;HaplotypeScore=19.5455;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=102;MQRankSum=-2.888;QD=13.09;ReadPosRankSum=6.095;SB=-3.522e+03 GT:AD:DP:GQ:PL 1/1:13,607:630:99:8244,929,0 chrIV 757943 . A G 5614.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475;DP=653;Dels=0.00;FS=8.313;HaplotypeScore=97.6429;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=110;MQRankSum=-0.651;QD=8.60;ReadPosRankSum=-4.720;SB=-2.457e+03 GT:AD:DP:GQ:PL 0/1:163,488:653:99:5614,0,967 chrIV 757949 . T C 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;DP=731;Dels=0.00;FS=45.183;HaplotypeScore=133.9523;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=108;MQRankSum=-3.733;QD=0.07;ReadPosRankSum=-4.226;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:606,125:731:83:83,0,7166 chrIV 757961 . T C 10624.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=796;Dels=0.00;FS=2.480;HaplotypeScore=35.2928;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=114;MQRankSum=-2.354;QD=13.35;ReadPosRankSum=1.910;SB=-5.130e+03 GT:AD:DP:GQ:PL 1/1:3,792:796:99:10624,1158,0 chrIV 758027 . A T 9615.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=751;Dels=0.00;FS=39.400;HaplotypeScore=23.6301;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=122;MQRankSum=9.586;QD=12.80;ReadPosRankSum=7.463;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:114,637:751:99:9615,930,0 chrIV 758042 . C T 7334.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.499;DP=693;Dels=0.00;FS=31.114;HaplotypeScore=15.3496;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=121;MQRankSum=10.128;QD=10.58;ReadPosRankSum=8.652;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:142,543:693:99:7334,577,0 chrIV 758089 . A T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.237;DP=525;Dels=0.00;FS=43.999;HaplotypeScore=107.1440;MLEAC=1;MLEAF=0.500;MQ=23.03;MQ0=85;MQRankSum=-4.428;QD=0.30;ReadPosRankSum=8.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:415,109:525:99:190,0,3224 chrIV 758096 . A C 1051.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=508;Dels=0.00;FS=191.286;HaplotypeScore=98.9682;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=81;MQRankSum=-2.950;QD=2.07;ReadPosRankSum=5.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,233:508:99:1081,0,2250 chrIV 758124 . A G 4052.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=23.4862;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=50;MQRankSum=-3.572;QD=10.13;ReadPosRankSum=5.380;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:17,383:400:99:4052,458,0 chrIV 758126 . G T 3637.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.468;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=22.5613;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=45;MQRankSum=-3.004;QD=9.21;ReadPosRankSum=5.027;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:10,342:395:99:3637,407,0 chrIV 758156 . A G 5220.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=13.9477;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=26;MQRankSum=-0.593;QD=13.56;ReadPosRankSum=2.429;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,382:385:99:5220,567,0 chrIV 758162 . C T 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;DP=370;Dels=0.00;FS=129.397;HaplotypeScore=27.1104;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=26;MQRankSum=-2.597;QD=0.51;ReadPosRankSum=2.661;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:280,90:370:99:219,0,3766 chrIV 758182 . C A 4206.01 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.9707;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=23;QD=16.62;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4206,432,0 chrIV 758219 . A T 1272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;DP=141;Dels=0.00;FS=133.885;HaplotypeScore=10.7680;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=10;MQRankSum=2.217;QD=9.02;ReadPosRankSum=0.697;SB=-4.700e+02 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1302,0,784 chrIV 758220 . C A 599.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.751;DP=130;Dels=0.00;FS=127.718;HaplotypeScore=9.9793;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=9;MQRankSum=-1.861;QD=4.61;ReadPosRankSum=1.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,62:130:99:629,0,1309 chrIV 758222 . A G 549.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DP=124;Dels=0.00;FS=111.089;HaplotypeScore=9.1906;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=8;MQRankSum=-0.697;QD=4.43;ReadPosRankSum=4.509;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,50:124:99:579,0,1253 chrIV 758224 . C A 588.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;DP=117;Dels=0.00;FS=120.788;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=8;MQRankSum=-1.004;QD=5.03;ReadPosRankSum=4.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,50:117:99:618,0,1165 chrIV 758234 . C T 432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=86;Dels=0.00;FS=97.202;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=9;MQRankSum=-1.368;QD=5.02;ReadPosRankSum=-1.530;SB=-1.402e+01 GT:AD:DP:GQ:PL 0/1:52,32:86:99:462,0,463 chrIV 758240 . T C 814 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=11;QD=11.63;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:847,93,0 chrIV 758249 . T C 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;DP=69;Dels=0.00;FS=61.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.80;MQ0=14;MQRankSum=-0.078;QD=2.67;ReadPosRankSum=3.283;SB=-5.974e-03 GT:AD:DP:GQ:PL 0/1:23,46:69:99:214,0,308 chrIV 758253 . G A 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DP=66;Dels=0.00;FS=48.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.22;MQ0=14;MQRankSum=-0.625;QD=2.52;ReadPosRankSum=3.203;SB=1.18 GT:AD:DP:GQ:PL 0/1:20,46:66:99:196,0,236 chrIV 758281 . A T 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9502;MLEAC=1;MLEAF=0.500;MQ=12.67;MQ0=14;MQRankSum=0.071;QD=1.99;ReadPosRankSum=0.888;SB=-9.252e-03 GT:AD:DP:GQ:PL 0/1:17,55:73:29:175,0,29 chrIV 758306 . A G 267 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.02;MQ0=6;MQRankSum=-0.255;QD=3.56;ReadPosRankSum=1.681;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:2,73:75:39:300,39,0 chrIV 758310 . T C 265 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=74;Dels=0.00;FS=47.193;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=13.63;MQ0=4;MQRankSum=-2.692;QD=3.58;ReadPosRankSum=2.898;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:4,70:74:39:298,39,0 chrIV 758318 . A T 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DP=74;Dels=0.00;FS=34.183;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=13.56;MQ0=5;MQRankSum=-1.182;QD=2.61;ReadPosRankSum=0.586;SB=-3.022e+00 GT:AD:DP:GQ:PL 0/1:7,67:74:26:223,0,26 chrIV 758342 . T C 258 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.80;MQ0=1;QD=5.27;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:39:291,39,0 chrIV 758348 . A G 215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.6567;MLEAC=2;MLEAF=1.00;MQ=13.82;MQ0=1;MQRankSum=0.989;QD=4.78;ReadPosRankSum=-1.135;SB=-7.496e+01 GT:AD:DP:GQ:PL 1/1:9,36:45:33:248,33,0 chrIV 758354 . T C 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;DP=33;Dels=0.00;FS=14.352;HaplotypeScore=3.3454;MLEAC=1;MLEAF=0.500;MQ=13.80;MQ0=2;MQRankSum=0.062;QD=2.21;ReadPosRankSum=-3.736;SB=-1.559e+00 GT:AD:DP:GQ:PL 0/1:13,20:33:48:103,0,48 chrIV 758372 . A G 85.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.23;MQ0=2;QD=5.02;SB=-7.476e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:118,15,0 chrIV 758374 . C A 64.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.23;MQ0=2;QD=3.79;SB=-6.555e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:97,12,0 chrIV 759386 . C T 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.56;MQ0=19;MQRankSum=-5.427;QD=0.34;ReadPosRankSum=-0.627;SB=-4.051e+01 GT:AD:DP:GQ:PL 1/1:122,50:172:12:91,12,0 chrIV 759392 . T C 101.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=14.80;MQ0=21;MQRankSum=1.166;QD=0.50;ReadPosRankSum=3.411;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,197:201:18:134,18,0 chrIV 759414 . C T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=1;MLEAF=0.500;MQ=14.20;MQ0=42;MQRankSum=-4.532;QD=0.10;ReadPosRankSum=0.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,88:284:58:58,0,147 chrIV 759416 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=14.20;MQ0=44;MQRankSum=-4.743;QD=0.08;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,88:289:52:52,0,194 chrIV 759433 . A T 194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.275;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=15.4945;MLEAC=1;MLEAF=0.500;MQ=13.87;MQ0=71;MQRankSum=3.557;QD=0.60;ReadPosRankSum=-2.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,217:323:99:224,0,218 chrIV 759440 . C A 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.753;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=14.3551;MLEAC=1;MLEAF=0.500;MQ=13.89;MQ0=71;MQRankSum=1.627;QD=0.36;ReadPosRankSum=2.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:270,54:324:99:146,0,297 chrIV 759468 . A G 458 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=75;QD=2.35;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,194:194:54:491,54,0 chrIV 759470 . G T 488 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=12.13;MQ0=77;QD=2.46;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,182:198:57:521,57,0 chrIV 759500 . A G 488 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.9874;MLEAC=2;MLEAF=1.00;MQ=12.90;MQ0=95;MQRankSum=-1.866;QD=3.25;ReadPosRankSum=-0.877;SB=-8.699e-03 GT:AD:DP:GQ:PL 1/1:6,143:150:36:521,36,0 chrIV 759526 . C A 750 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=112;QD=4.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,177:180:81:783,81,0 chrIV 759564 . C A 5318.01 filter AC=2;AF=1.00;AN=2;DP=503;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=129;QD=10.57;SB=-3.633e+03 GT:AD:DP:GQ:PL 1/1:0,503:503:99:5318,531,0 chrIV 759578 . T C 6266.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=568;Dels=0.00;FS=9.695;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=108;MQRankSum=-1.122;QD=11.03;ReadPosRankSum=2.396;SB=-3.847e+03 GT:AD:DP:GQ:PL 1/1:2,565:568:99:6266,632,0 chrIV 759584 . T C 6651.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=588;Dels=0.00;FS=4.798;HaplotypeScore=9.3925;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=99;MQRankSum=-1.562;QD=11.31;ReadPosRankSum=1.640;SB=-4.037e+03 GT:AD:DP:GQ:PL 1/1:1,587:588:99:6651,674,0 chrIV 759625 . A T 6853.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=570;Dels=0.00;FS=16.616;HaplotypeScore=12.3321;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=49;MQRankSum=0.040;QD=12.02;ReadPosRankSum=3.152;SB=-4.111e+03 GT:AD:DP:GQ:PL 1/1:30,540:570:99:6853,620,0 chrIV 759660 . A G 2173 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.295;DP=219;Dels=0.00;FS=27.854;HaplotypeScore=21.2014;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=25;MQRankSum=-1.330;QD=9.92;ReadPosRankSum=6.738;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:19,200:219:99:2206,234,0 chrIV 759662 . G T 1952 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=195;Dels=0.00;FS=2.908;HaplotypeScore=3.9610;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=23;MQRankSum=-1.585;QD=10.01;ReadPosRankSum=1.904;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,171:195:99:1985,201,0 chrIV 759686 . T C 1796 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=29;MQRankSum=-1.681;QD=10.88;ReadPosRankSum=1.681;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:1829,204,0 chrIV 759698 . T C 1112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DP=165;Dels=0.00;FS=29.363;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=27;MQRankSum=2.455;QD=6.74;ReadPosRankSum=-2.412;SB=-1.004e+03 GT:AD:DP:GQ:PL 0/1:34,128:165:99:1142,0,151 chrIV 759714 . A G 2072 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.969;DP=169;Dels=0.00;FS=19.740;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=14;MQRankSum=-0.371;QD=12.26;ReadPosRankSum=4.832;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:10,159:169:99:2105,234,0 chrIV 759756 . C A 3291.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=192;Dels=0.00;FS=16.566;HaplotypeScore=43.0104;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=9;MQRankSum=3.532;QD=17.14;ReadPosRankSum=-0.695;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:12,180:192:99:3291,308,0 chrIV 759765 . T C 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.579;DP=191;Dels=0.00;FS=108.429;HaplotypeScore=55.5907;MLEAC=1;MLEAF=0.500;MQ=41.38;MQ0=3;MQRankSum=-9.109;QD=0.33;ReadPosRankSum=-5.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,44:191:93:93,0,2763 chrIV 759794 . A T 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=5.0103;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=0.000;QD=21.08;ReadPosRankSum=1.322;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3237,336,0 chrIV 759809 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=22.79;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3396,340,0 chrIV 759818 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=21.45;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3518,364,0 chrIV 759888 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=147;Dels=0.00;FS=3.035;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-0.415;QD=23.90;ReadPosRankSum=2.416;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3514,355,0 chrIV 760206 . G C 2196 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.41;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2229,228,0 chrIV 760217 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.50;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1944,201,0 chrIV 760275 . G C 2855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.79;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2888,297,0 chrIV 760350 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=8.265;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.946;QD=24.92;ReadPosRankSum=2.385;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3788,391,0 chrIV 760456 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.72;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3858,382,0 chrIV 760734 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.59;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3230,319,0 chrIV 760775 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=3.025;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.272;QD=24.64;ReadPosRankSum=2.396;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2300,246,0 chrIV 761335 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=9.237;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.319;QD=25.98;ReadPosRankSum=2.362;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2943,295,0 chrIV 761363 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.49;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2678,270,0 chrIV 761375 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=4.548;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.517;QD=23.93;ReadPosRankSum=1.702;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2761,282,0 chrIV 761455 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2491,252,0 chrIV 761715 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.2805;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.050;QD=25.33;ReadPosRankSum=1.312;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3344,331,0 chrIV 763207 . A G 6318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.407;QD=24.58;ReadPosRankSum=1.664;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:6318,652,0 chrIV 767007 . C T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4557,454,0 chrIV 767443 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=163;Dels=0.00;FS=5.844;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.364;QD=23.24;ReadPosRankSum=2.895;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3788,391,0 chrIV 768037 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.70;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1304,135,0 chrIV 770352 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.94;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3476,349,0 chrIV 774849 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2575,267,0 chrIV 777699 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.68;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4294,445,0 chrIV 778867 . A G 526 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:60:559,60,0 chrIV 781103 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.199;QD=25.45;ReadPosRankSum=1.711;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4200,433,0 chrIV 781689 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4408;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.39;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3748,367,0 chrIV 782125 . A T 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.386;QD=25.90;ReadPosRankSum=1.663;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2623,264,0 chrIV 784282 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:4133,418,0 chrIV 785712 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.280;QD=23.16;ReadPosRankSum=1.612;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2696,279,0 chrIV 794376 . T C 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=211;Dels=0.00;FS=6.126;HaplotypeScore=9.4398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.478;QD=23.42;ReadPosRankSum=2.414;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:2,206:211:99:4942,508,0 chrIV 795537 . C G 6016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.0457;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.398;QD=22.62;ReadPosRankSum=0.301;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:1,259:266:99:6016,614,0 chrIV 795775 . C G 6215.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=19.0249;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.09;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,254:258:99:6215,631,0 chrIV 795883 . G A 5281.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.10;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5281,541,0 chrIV 795893 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.23;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5436,541,0 chrIV 795937 . T C 4779.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.1708;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.13;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4779,484,0 chrIV 796092 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.77;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3328,325,0 chrIV 796104 . T A 2855 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.39;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2888,297,0 chrIV 796175 . G T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.93;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3374,337,0 chrIV 797067 . G A 6319.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.2691;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.30;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6319,625,0 chrIV 802858 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=25.89;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2803,277,0 chrIV 802970 . C T 1687 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=18;QD=18.14;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:7,86:93:99:1720,174,0 chrIV 804961 . G T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=25.16;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5459,535,0 chrIV 805826 . T C 2896 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.63;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2929,300,0 chrIV 806584 . T C 6678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.1299;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.948;QD=26.19;ReadPosRankSum=2.430;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:6678,688,0 chrIV 808808 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.30;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4156,415,0 chrIV 810372 . T C 2097 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2130,225,0 chrIV 810443 . A C 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.318;QD=24.14;ReadPosRankSum=1.662;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1216,123,0 chrIV 811697 . T C 4203.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0404;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.58;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:4203,424,0 chrIV 811818 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.56;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3564,370,0 chrIV 812947 . C T 706 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.24;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:72:739,72,0 chrIV 813568 . G A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.96;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5141,538,0 chrIV 814423 . G A 5458.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.39;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5458,550,0 chrIV 815495 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=4.600;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.168;QD=25.65;ReadPosRankSum=1.704;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3214,331,0 chrIV 816707 . G C 2587 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.52;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2620,267,0 chrIV 817489 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.9977;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.92;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4186,430,0 chrIV 817854 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6242;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.51;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3579,349,0 chrIV 818363 . C A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4585,460,0 chrIV 818486 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2026,216,0 chrIV 818791 . T C 1432 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.04;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1465,150,0 chrIV 819242 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.47;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2755,285,0 chrIV 819541 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2977,292,0 chrIV 819584 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2949,286,0 chrIV 819656 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2748,271,0 chrIV 819998 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.55;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3246,322,0 chrIV 820028 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.40;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3398,331,0 chrIV 820419 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.19;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2804,277,0 chrIV 820472 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3623,367,0 chrIV 820541 . T G 2871 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.97;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2904,294,0 chrIV 820638 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=7.861;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.769;QD=24.10;ReadPosRankSum=2.418;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3760,379,0 chrIV 820678 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.54;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3414,349,0 chrIV 820777 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.95;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3801,367,0 chrIV 820879 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=25.66;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3439,337,0 chrIV 820898 . C A 3073 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=23.11;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3106,316,0 chrIV 820921 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.55;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3118,307,0 chrIV 821234 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.66;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3138,313,0 chrIV 821264 . A T 3007 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=26.38;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3040,301,0 chrIV 821309 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.40;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2452,246,0 chrIV 821327 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.37;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2360,243,0 chrIV 821485 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=2.876;HaplotypeScore=6.7616;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.425;QD=24.17;ReadPosRankSum=2.412;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3248,331,0 chrIV 821498 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=131;Dels=0.00;FS=2.804;HaplotypeScore=8.3265;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.235;QD=22.30;ReadPosRankSum=2.393;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2954,303,0 chrIV 821555 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=117;Dels=0.00;FS=4.112;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.672;QD=21.14;ReadPosRankSum=1.643;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2506,255,0 chrIV 821579 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=4.385;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.625;QD=22.08;ReadPosRankSum=1.678;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2926,303,0 chrIV 821605 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.32;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3798,367,0 chrIV 821822 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3012;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.94;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3736,388,0 chrIV 822225 . G C 2783 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2816,288,0 chrIV 822347 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.62;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2537,249,0 chrIV 822353 . T A 2477 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.37;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2510,249,0 chrIV 822554 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.97;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2830,288,0 chrIV 822572 . T A 2631 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.49;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2664,265,0 chrIV 822719 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.112;QD=25.60;ReadPosRankSum=1.704;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3182,325,0 chrIV 823181 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.61;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2666,264,0 chrIV 823188 . A G 2410 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=22.95;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2443,255,0 chrIV 823198 . T G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.254;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.378;QD=23.19;ReadPosRankSum=1.669;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2584,264,0 chrIV 823234 . T C 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.63;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2727,279,0 chrIV 824938 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.163;QD=27.03;ReadPosRankSum=1.680;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3649,364,0 chrIV 825050 . T C 2256 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.12;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2289,240,0 chrIV 825422 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.82;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3379,346,0 chrIV 825834 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.60;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2714,276,0 chrIV 826114 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=148;Dels=0.00;FS=5.618;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.678;QD=25.86;ReadPosRankSum=2.884;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3828,397,0 chrIV 828358 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.47;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2937,289,0 chrIV 828748 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.320;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.614;QD=25.05;ReadPosRankSum=1.677;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4759,496,0 chrIV 829122 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=2.885;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=25.80;ReadPosRankSum=2.400;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3818,385,0 chrIV 829373 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.547;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.470;QD=25.72;ReadPosRankSum=1.705;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3344,340,0 chrIV 830274 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.611;QD=26.45;ReadPosRankSum=1.707;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3597,355,0 chrIV 830412 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.48;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2628,273,0 chrIV 830619 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2556,267,0 chrIV 830754 . A T 2878 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2911,286,0 chrIV 831133 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=178;Dels=0.00;FS=3.503;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.401;QD=26.02;ReadPosRankSum=1.713;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4632,478,0 chrIV 831279 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.27;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4372,442,0 chrIV 831397 . A G 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=2.818;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.312;QD=23.58;ReadPosRankSum=2.388;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4739,487,0 chrIV 833173 . G T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4308,442,0 chrIV 836028 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.17;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4945,493,0 chrIV 836148 . A G 7146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=296;Dels=0.00;FS=9.711;HaplotypeScore=13.9277;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.624;QD=24.14;ReadPosRankSum=1.783;SB=-3.857e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:7146,730,0 chrIV 843125 . G T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.02;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3553,355,0 chrIV 843659 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.49;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2452,246,0 chrIV 843818 . C A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0219;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.06;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4036,418,0 chrIV 844178 . C T 6450.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.0791;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.20;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:6450,640,0 chrIV 844392 . A T 6545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=24.1294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.721;QD=25.37;ReadPosRankSum=1.651;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6545,646,0 chrIV 845136 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3011,295,0 chrIV 845391 . G C 2130 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2163,219,0 chrIV 845494 . T G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=3.010;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.219;QD=22.36;ReadPosRankSum=2.376;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2269,234,0 chrIV 845513 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=101;Dels=0.00;FS=5.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.712;QD=21.14;ReadPosRankSum=3.368;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:4,96:101:99:2168,222,0 chrIV 846137 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3584,367,0 chrIV 847822 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=145;Dels=0.00;FS=9.969;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.563;QD=23.69;ReadPosRankSum=2.896;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3435,352,0 chrIV 848316 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.31;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1498,153,0 chrIV 848416 . C G 939 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.56;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:972,102,0 chrIV 849395 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3018,301,0 chrIV 849796 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2098,216,0 chrIV 853448 . A C 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.537;QD=24.26;ReadPosRankSum=1.659;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3445,346,0 chrIV 854838 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=128;Dels=0.00;FS=11.429;HaplotypeScore=7.2401;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.512;QD=24.29;ReadPosRankSum=2.928;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3142,319,0 chrIV 855056 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2822,280,0 chrIV 855709 . C T 4998.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.1279;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.87;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4998,490,0 chrIV 856366 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4788,490,0 chrIV 856696 . A G 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.551;QD=25.69;ReadPosRankSum=2.374;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4984,502,0 chrIV 857627 . A C 5814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=226;Dels=0.00;FS=8.657;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.682;QD=25.73;ReadPosRankSum=2.417;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:5814,601,0 chrIV 858644 . T C 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.365;QD=24.48;ReadPosRankSum=1.676;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4578,469,0 chrIV 860079 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.20;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4335,439,0 chrIV 860231 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.695;QD=23.83;ReadPosRankSum=1.714;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4528,466,0 chrIV 860711 . T G 5685.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.49;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5685,592,0 chrIV 860764 . T C 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=3.531;HaplotypeScore=9.5080;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.919;QD=23.06;ReadPosRankSum=1.717;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5350,556,0 chrIV 861257 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.23;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3973,403,0 chrIV 862580 . T G 2410 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.34;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2443,249,0 chrIV 864550 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.751;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.747;QD=23.38;ReadPosRankSum=1.647;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4792,505,0 chrIV 864978 . G A 181.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.46;SB=-3.104e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:214,21,0 chrIV 865291 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.65;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4688,463,0 chrIV 865297 . A T 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-1.262;QD=21.03;ReadPosRankSum=1.645;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4185,424,0 chrIV 866146 . A G 6332.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=20.0076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.73;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6332,664,0 chrIV 866436 . T C 5551.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5551,565,0 chrIV 866723 . G T 6168.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=22.6634;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.81;SB=-3.695e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:6168,607,0 chrIV 866949 . C T 6504.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=25.3049;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.64;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,260:264:99:6504,667,0 chrIV 866998 . T C 6565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=17.4701;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.586;QD=25.45;ReadPosRankSum=1.705;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:6565,682,0 chrIV 867546 . G A 7136.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=24.2262;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.03;SB=-3.600e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:7136,742,0 chrIV 867677 . G A 6347.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=27.9844;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.43;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6347,646,0 chrIV 867821 . C A 4664.01 SnpCluster AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=18.43;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4664,469,0 chrIV 867828 . T C 4195.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=-0.318;QD=17.12;ReadPosRankSum=1.704;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:4195,441,0 chrIV 867831 . A C 4185.01 SnpCluster AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=16.74;SB=-3.324e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4185,430,0 chrIV 867837 . A G 3995.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=255;Dels=0.00;FS=3.207;HaplotypeScore=4.3787;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;MQRankSum=-0.313;QD=15.67;ReadPosRankSum=1.704;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:1,248:255:99:3995,412,0 chrIV 867841 . C T 4105.01 SnpCluster AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.1674;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=16.23;SB=-3.504e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4105,409,0 chrIV 867988 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.411;DP=193;Dels=0.00;FS=4.138;HaplotypeScore=160.8187;MLEAC=1;MLEAF=0.500;MQ=47.59;MQ0=0;MQRankSum=3.588;QD=0.13;ReadPosRankSum=-5.351;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:177,14:193:56:56,0,126 chrIV 867989 . A G 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DP=191;Dels=0.00;FS=4.139;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=47.30;MQ0=0;MQRankSum=-2.219;QD=0.64;ReadPosRankSum=5.678;SB=-1.808e+03 GT:AD:DP:GQ:PL 0/1:14,177:191:32:152,0,32 chrIV 868027 . G A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=22.61;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4771,478,0 chrIV 868348 . G T 4927.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=21.0208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.46;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4927,493,0 chrIV 868576 . A G 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.324;QD=24.24;ReadPosRankSum=1.714;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4532,466,0 chrIV 868578 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.83;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4480,469,0 chrIV 868817 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.71;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3960,391,0 chrIV 868916 . C A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3823,379,0 chrIV 869237 . A G 4901.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.51;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4901,493,0 chrIV 869651 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2942,283,0 chrIV 869984 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3229,319,0 chrIV 870200 . G C 4084.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.37;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4084,415,0 chrIV 870699 . A T 1065 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.8283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1098,111,0 chrIV 872217 . T C 45.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.20;MQ0=21;QD=1.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,3:24:9:78,9,0 chrIV 884220 . A T 39.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=7;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=2;MQRankSum=0.731;QD=5.60;ReadPosRankSum=0.731;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:3,4:7:10:69,0,10 chrIV 884761 . T A 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.085;QD=23.52;ReadPosRankSum=2.326;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3740,370,0 chrIV 884768 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.93;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3684,361,0 chrIV 886934 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.51;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1577,159,0 chrIV 886952 . A C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.247;QD=23.60;ReadPosRankSum=1.663;SB=-3.601e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1213,123,0 chrIV 887044 . A G 839 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=35.7608;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.08;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:93:872,93,0 chrIV 889122 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.031;QD=26.46;ReadPosRankSum=1.691;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2256,228,0 chrIV 890069 . T C 7038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=296;Dels=0.00;FS=7.560;HaplotypeScore=19.2468;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.657;QD=23.78;ReadPosRankSum=1.888;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:2,291:296:99:7038,715,0 chrIV 890632 . T C 9057.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=396;Dels=0.00;FS=8.821;HaplotypeScore=26.0544;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.411;QD=22.87;ReadPosRankSum=3.400;SB=-4.916e+03 GT:AD:DP:GQ:PL 1/1:4,391:396:99:9057,923,0 chrIV 893751 . C G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8922;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.14;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4374,454,0 chrIV 894453 . A T 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.817;QD=22.46;ReadPosRankSum=2.327;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4492,472,0 chrIV 896181 . A C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.667;DP=145;Dels=0.00;FS=12.317;HaplotypeScore=13.8973;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.975;QD=23.60;ReadPosRankSum=3.710;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:5,140:145:99:3422,352,0 chrIV 898087 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3025;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.63;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2396,249,0 chrIV 898970 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.66;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4079,409,0 chrIV 900294 . C T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.15;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4553,448,0 chrIV 901107 . T A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.64;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4754,469,0 chrIV 901609 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.24;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3862,388,0 chrIV 902361 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.483;QD=24.17;ReadPosRankSum=-0.756;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4448,451,0 chrIV 907581 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4732,493,0 chrIV 908034 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=128;Dels=0.00;FS=5.390;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.183;QD=23.51;ReadPosRankSum=2.913;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:3042,309,0 chrIV 909447 . T A 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=4.032;HaplotypeScore=16.0198;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.608;QD=22.89;ReadPosRankSum=1.670;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3822,382,0 chrIV 910688 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2030,207,0 chrIV 911925 . G T 2537 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.63;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2570,255,0 chrIV 916469 . C A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.57;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3749,373,0 chrIV 917149 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1912,189,0 chrIV 922174 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.77;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3005,298,0 chrIV 923675 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.34;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4536,466,0 chrIV 926405 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.38;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3657,373,0 chrIV 926737 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.67;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4194,418,0 chrIV 926855 . G A 4571.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.20;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4571,457,0 chrIV 926869 . C A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.35;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4715,469,0 chrIV 926907 . G C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.3274;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.28;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4150,421,0 chrIV 926985 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.87;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4094,415,0 chrIV 927194 . C A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=26.60;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3831,382,0 chrIV 927218 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.11;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2974,306,0 chrIV 927223 . C A 3095 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.27;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3128,313,0 chrIV 927608 . C A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9717;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.84;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3278,322,0 chrIV 927628 . C T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.318;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=5.1472;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.605;QD=18.83;ReadPosRankSum=1.691;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3234,301,0 chrIV 928114 . A T 4933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.596;DP=231;Dels=0.00;FS=7.913;HaplotypeScore=8.1992;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.937;QD=21.36;ReadPosRankSum=3.724;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:5,226:231:99:4933,511,0 chrIV 928575 . C A 7216.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.66;SB=-3.458e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:7216,718,0 chrIV 928756 . C T 6938.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=17.5298;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.51;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6938,703,0 chrIV 928988 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.31;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4196,421,0 chrIV 929658 . A T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.84;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3312,342,0 chrIV 929662 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.66;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3260,342,0 chrIV 929778 . A C 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.4741;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.634;QD=22.47;ReadPosRankSum=1.716;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4786,496,0 chrIV 929900 . G C 4393.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=25.54;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4393,448,0 chrIV 929923 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.97;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4395,448,0 chrIV 930017 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.36;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5071,526,0 chrIV 930059 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=166;Dels=0.00;FS=4.488;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.308;QD=23.22;ReadPosRankSum=1.711;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3854,400,0 chrIV 930077 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=22.49;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3329,331,0 chrIV 930091 . T A 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=162;Dels=0.00;FS=6.957;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.251;QD=22.09;ReadPosRankSum=2.374;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3578,352,0 chrIV 930330 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.43;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1978,195,0 chrIV 930409 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=23.84;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1392,141,0 chrIV 930469 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.71;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1960,207,0 chrIV 930727 . G C 3317.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=25.13;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3317,340,0 chrIV 930856 . G C 2111 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.99;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2144,222,0 chrIV 930989 . C G 1175 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=11.99;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1208,126,0 chrIV 931013 . G C 1917 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4549;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=15.59;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:1950,204,0 chrIV 931147 . T C 4866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4963;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=27.34;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4866,496,0 chrIV 931376 . C A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.1207;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.58;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5065,499,0 chrIV 931988 . C T 6034.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6034,607,0 chrIV 934187 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.16;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3396,354,0 chrIV 934903 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.25;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2519,255,0 chrIV 934911 . G C 2422 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.70;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2455,255,0 chrIV 935012 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.697;QD=25.15;ReadPosRankSum=1.663;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2548,255,0 chrIV 935079 . G C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.93;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3278,339,0 chrIV 935138 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=25.19;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3275,325,0 chrIV 935955 . A T 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=230;Dels=0.00;FS=3.705;HaplotypeScore=13.5796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=25.69;ReadPosRankSum=1.717;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5908,583,0 chrIV 936221 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1116;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.692;QD=25.08;ReadPosRankSum=1.672;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4338,442,0 chrIV 936290 . A T 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.0298;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.201;QD=22.81;ReadPosRankSum=1.705;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2976,303,0 chrIV 936485 . T A 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=102.8633;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.845;QD=20.92;ReadPosRankSum=1.646;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2564,252,0 chrIV 936486 . G C 2468 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=107.3837;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.07;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2501,252,0 chrIV 936663 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=25.73;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3963,406,0 chrIV 937029 . A G 5137.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.4724;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.31;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5137,526,0 chrIV 937139 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=162;Dels=0.00;FS=11.374;HaplotypeScore=11.4068;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.297;QD=25.01;ReadPosRankSum=2.475;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,156:162:99:4052,409,0 chrIV 937167 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.61;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4391,436,0 chrIV 937744 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2057,210,0 chrIV 937875 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.443;QD=28.07;ReadPosRankSum=1.708;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:4070,418,0 chrIV 938009 . A T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.59;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4230,415,0 chrIV 938323 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=215;Dels=0.00;FS=6.047;HaplotypeScore=15.7708;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.348;QD=23.69;ReadPosRankSum=2.938;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:3,208:215:99:5093,535,0 chrIV 938510 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.921;HaplotypeScore=16.6053;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.496;QD=21.54;ReadPosRankSum=1.713;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4006,418,0 chrIV 938591 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0695;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.641;QD=23.17;ReadPosRankSum=1.714;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4448,457,0 chrIV 938617 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.57;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4360,427,0 chrIV 939008 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.27;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3262,337,0 chrIV 939122 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4611,478,0 chrIV 939749 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=3.220;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.632;QD=22.33;ReadPosRankSum=1.610;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3840,402,0 chrIV 940972 . G C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.8177;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.84;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4210,442,0 chrIV 940995 . T A 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=188;Dels=0.00;FS=8.567;HaplotypeScore=11.8529;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.453;QD=22.07;ReadPosRankSum=3.394;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4150,430,0 chrIV 941063 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4756;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.274;QD=25.40;ReadPosRankSum=2.401;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:5130,535,0 chrIV 941099 . C T 6034.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.18;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6034,601,0 chrIV 941151 . T C 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=227;Dels=0.00;FS=9.073;HaplotypeScore=13.7596;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.123;QD=24.69;ReadPosRankSum=3.399;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:4,222:227:99:5605,565,0 chrIV 942067 . T G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=161;Dels=0.00;FS=3.260;HaplotypeScore=6.0260;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.087;QD=18.07;ReadPosRankSum=1.388;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2943,321,0 chrIV 942069 . G A 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.208;HaplotypeScore=7.6048;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.916;QD=18.94;ReadPosRankSum=1.600;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3045,327,0 chrIV 944445 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3485,343,0 chrIV 948400 . A C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.778;QD=23.46;ReadPosRankSum=1.591;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2332,231,0 chrIV 948413 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.311;QD=22.60;ReadPosRankSum=2.350;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2270,231,0 chrIV 949789 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=128;Dels=0.00;FS=2.591;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.811;QD=25.11;ReadPosRankSum=2.945;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3247,334,0 chrIV 949927 . A G 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.570;QD=24.99;ReadPosRankSum=1.709;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3799,391,0 chrIV 950587 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=27.41;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3700,361,0 chrIV 952329 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=7.498;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.824;QD=23.28;ReadPosRankSum=2.403;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2501,255,0 chrIV 955222 . C T 8200.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.43;SB=-4.846e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:8200,841,0 chrIV 955620 . A C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.733;QD=22.85;ReadPosRankSum=1.699;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2409,243,0 chrIV 955831 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.38;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1130,117,0 chrIV 956734 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.45;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4576,442,0 chrIV 959283 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2837,283,0 chrIV 960835 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.878;QD=24.69;ReadPosRankSum=1.708;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3531,370,0 chrIV 961077 . C A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1647;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.20;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4296,412,0 chrIV 961189 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=2.580;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.734;QD=24.72;ReadPosRankSum=2.278;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3246,331,0 chrIV 961222 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.93;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3365,328,0 chrIV 961234 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.14;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2764,285,0 chrIV 961561 . A T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3280,328,0 chrIV 961848 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=28.43;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4293,424,0 chrIV 962280 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=167;Dels=0.00;FS=5.099;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.123;QD=23.65;ReadPosRankSum=1.627;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3949,415,0 chrIV 962545 . G A 5732.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7062;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=27.17;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5732,556,0 chrIV 962572 . C A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.48;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4764,475,0 chrIV 962700 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.9415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.592;QD=23.59;ReadPosRankSum=1.715;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4670,475,0 chrIV 962922 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8690;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.08;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3684,382,0 chrIV 962980 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.10;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3927,414,0 chrIV 963291 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2551,264,0 chrIV 963747 . C T 5513.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.29;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5513,550,0 chrIV 963777 . T C 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=200;Dels=0.00;FS=3.030;HaplotypeScore=8.9325;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.473;QD=27.02;ReadPosRankSum=2.425;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:5404,547,0 chrIV 963941 . A G 5448.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.79;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5448,565,0 chrIV 964950 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2223,228,0 chrIV 965565 . T A 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.172;QD=25.85;ReadPosRankSum=1.679;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3412,340,0 chrIV 965626 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3164,313,0 chrIV 998484 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=187;Dels=0.00;FS=9.244;HaplotypeScore=8.9261;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.741;QD=23.52;ReadPosRankSum=2.941;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4398,454,0 chrIV 998628 . A T 5676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.065;QD=26.52;ReadPosRankSum=1.684;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5676,559,0 chrIV 1000486 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.94;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4280,427,0 chrIV 1003824 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.65;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3565,361,0 chrIV 1004080 . T G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4247,436,0 chrIV 1008496 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3358,337,0 chrIV 1008697 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.51;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1232,123,0 chrIV 1008843 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=25.55;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1004,99,0 chrIV 1008848 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.76;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1007,99,0 chrIV 1010738 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.37;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3653,373,0 chrIV 1011936 . A T 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5165;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.456;QD=20.99;ReadPosRankSum=2.404;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4533,454,0 chrIV 1011970 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.2562;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.346;QD=22.29;ReadPosRankSum=1.659;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4257,427,0 chrIV 1012050 . A T 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=158;Dels=0.00;FS=5.142;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.210;QD=21.25;ReadPosRankSum=1.350;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3357,324,0 chrIV 1012657 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=19.0653;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.30;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4739,469,0 chrIV 1013385 . T G 2028 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.0388;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.50;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:104:99:2061,219,0 chrIV 1013924 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1782;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.58;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3726,390,0 chrIV 1013982 . C T 88.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=181;Dels=0.00;FS=2.367;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-0.194;QD=0.49;ReadPosRankSum=-5.988;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:167,14:181:26:118,0,26 chrIV 1013983 . C T 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;DP=182;Dels=0.00;FS=2.361;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=-0.150;QD=0.32;ReadPosRankSum=6.064;SB=-2.176e+03 GT:AD:DP:GQ:PL 0/1:14,168:182:87:88,0,87 chrIV 1014073 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.71;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3817,391,0 chrIV 1014400 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.70;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2031,201,0 chrIV 1014713 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8023;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.98;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3230,319,0 chrIV 1014863 . C A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.69;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3926,420,0 chrIV 1015056 . A G 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=208;Dels=0.00;FS=3.031;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.057;QD=23.12;ReadPosRankSum=2.414;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4808,499,0 chrIV 1015301 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.25;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4519,460,0 chrIV 1015598 . G A 5145.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.22;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5145,532,0 chrIV 1015740 . T G 2885 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.90;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2918,297,0 chrIV 1015807 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.63;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2131,213,0 chrIV 1015826 . T A 2155 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=24.49;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2188,219,0 chrIV 1015888 . T A 1727 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=24.67;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1760,171,0 chrIV 1015897 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.51;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1699,177,0 chrIV 1016050 . T C 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=70;Dels=0.00;FS=5.825;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.145;QD=18.79;ReadPosRankSum=1.218;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1348,141,0 chrIV 1016056 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.48;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1533,159,0 chrIV 1016282 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1473;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.08;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2967,303,0 chrIV 1016376 . G C 2820 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.18;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2853,288,0 chrIV 1016426 . C A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.35;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3579,358,0 chrIV 1016597 . A G 3712.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=24.58;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3712,382,0 chrIV 1016623 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.876;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-1.608;QD=24.03;ReadPosRankSum=2.384;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3605,370,0 chrIV 1016644 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=22.83;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3047,312,0 chrIV 1016685 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=-0.305;QD=20.05;ReadPosRankSum=2.397;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1898,195,0 chrIV 1016821 . A T 597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-0.079;QD=13.57;ReadPosRankSum=1.575;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:66:630,66,0 chrIV 1016858 . T A 1372 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=26.90;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1405,138,0 chrIV 1017015 . G T 1739 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.20;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1772,174,0 chrIV 1017026 . T G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.973;QD=26.00;ReadPosRankSum=1.685;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1931,189,0 chrIV 1017181 . A G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.082;QD=25.95;ReadPosRankSum=1.666;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2758,279,0 chrIV 1017610 . A C 2793 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=27.65;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2826,288,0 chrIV 1017759 . G T 2930 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2963,300,0 chrIV 1017855 . T A 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.265;QD=24.83;ReadPosRankSum=1.683;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3501,363,0 chrIV 1017915 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.47;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3309,334,0 chrIV 1018014 . A T 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.379;QD=25.84;ReadPosRankSum=1.709;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3799,382,0 chrIV 1018111 . C G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.36;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3906,406,0 chrIV 1018236 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3085,315,0 chrIV 1018321 . C A 2509 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2542,261,0 chrIV 1018564 . C A 2831 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2864,283,0 chrIV 1018753 . A G 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=86;Dels=0.00;FS=2.973;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.161;QD=23.57;ReadPosRankSum=2.391;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,82:86:99:2060,210,0 chrIV 1018804 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2665,259,0 chrIV 1019082 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.275;QD=26.43;ReadPosRankSum=1.694;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2438,246,0 chrIV 1019145 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=26.14;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3660,355,0 chrIV 1019153 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.34;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3554,364,0 chrIV 1019310 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.18;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3313,340,0 chrIV 1019506 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3703,379,0 chrIV 1019664 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.43;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3814,399,0 chrIV 1020081 . A T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.71;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4540,442,0 chrIV 1020194 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2768,277,0 chrIV 1020315 . G C 3159 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5728;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.23;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3192,336,0 chrIV 1020341 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.9017;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.28;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3218,316,0 chrIV 1020493 . C A 2291 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.33;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2324,225,0 chrIV 1020625 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.96;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1829,186,0 chrIV 1020636 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=92;Dels=0.00;FS=3.208;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.731;QD=19.25;ReadPosRankSum=1.694;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1804,186,0 chrIV 1021001 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=171;Dels=0.01;FS=12.116;HaplotypeScore=10.8269;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.868;QD=24.05;ReadPosRankSum=3.799;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:5,164:170:99:4112,424,0 chrIV 1021040 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.60;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4109,415,0 chrIV 1021130 . C A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5305,529,0 chrIV 1021556 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.74;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3612,373,0 chrIV 1022238 . G C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4305,442,0 chrIV 1022417 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3686,379,0 chrIV 1022660 . T A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2987;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3376,337,0 chrIV 1022874 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=4.162;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.759;QD=25.03;ReadPosRankSum=1.708;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3680,385,0 chrIV 1022969 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=25.38;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2368,243,0 chrIV 1023018 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=24.42;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3183,322,0 chrIV 1023030 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=23.61;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3079,307,0 chrIV 1023058 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=1;QD=25.23;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3264,325,0 chrIV 1026744 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3844,397,0 chrIV 1027653 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2457,252,0 chrIV 1028509 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.33;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3825,388,0 chrIV 1029308 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=121;Dels=0.00;FS=2.926;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.794;QD=24.71;ReadPosRankSum=2.327;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:3023,309,0 chrIV 1030124 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.06;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2631,273,0 chrIV 1030215 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=24.09;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2225,222,0 chrIV 1030251 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=24.88;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2745,276,0 chrIV 1030287 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=27.40;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3535,361,0 chrIV 1030401 . C T 1694 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=17.83;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1727,177,0 chrIV 1030402 . C A 1751 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=18.05;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1784,180,0 chrIV 1030406 . G A 1657 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=16.41;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1690,177,0 chrIV 1030407 . A T 1704 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=16.71;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1737,183,0 chrIV 1030428 . A C 2221 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=18.06;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2254,228,0 chrIV 1030607 . G C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.6479;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.518;QD=25.04;ReadPosRankSum=1.175;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4432,466,0 chrIV 1030683 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.37;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3704,376,0 chrIV 1030798 . A G 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.878;QD=23.82;ReadPosRankSum=1.650;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5049,514,0 chrIV 1030965 . G A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4556,445,0 chrIV 1031180 . C T 5994.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5994,610,0 chrIV 1031318 . T G 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=4.194;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.358;QD=24.70;ReadPosRankSum=1.712;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4372,445,0 chrIV 1031350 . A G 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.732;QD=24.05;ReadPosRankSum=1.713;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4450,460,0 chrIV 1031473 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.4453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3998,397,0 chrIV 1031550 . T A 3067 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3100,307,0 chrIV 1031637 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2878,300,0 chrIV 1031723 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.67;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2845,283,0 chrIV 1031974 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2828,283,0 chrIV 1032015 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.734;QD=25.55;ReadPosRankSum=1.704;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3252,337,0 chrIV 1032120 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3109,318,0 chrIV 1032507 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3160,327,0 chrIV 1032637 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3316,325,0 chrIV 1033176 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7300;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=13.05;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1717,168,0 chrIV 1033297 . A C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.786;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.575;QD=25.91;ReadPosRankSum=1.638;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2883,297,0 chrIV 1033434 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=114;Dels=0.00;FS=3.037;HaplotypeScore=12.6047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=23.57;ReadPosRankSum=2.340;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2720,279,0 chrIV 1033545 . A C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=7.486;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-2.131;QD=23.66;ReadPosRankSum=2.308;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3313,345,0 chrIV 1033569 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.80;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3085,313,0 chrIV 1033590 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=4.472;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.336;QD=19.68;ReadPosRankSum=1.707;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2788,294,0 chrIV 1033712 . A C 4640.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=26.36;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4640,478,0 chrIV 1033864 . A C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.088;QD=24.43;ReadPosRankSum=1.652;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4202,430,0 chrIV 1033877 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.52;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4108,406,0 chrIV 1033891 . G C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.81;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3643,370,0 chrIV 1033951 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.11;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3490,349,0 chrIV 1034115 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.764;QD=21.59;ReadPosRankSum=1.658;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2062,207,0 chrIV 1034116 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.661;QD=20.62;ReadPosRankSum=1.957;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,93:98:99:2054,216,0 chrIV 1034253 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3102,318,0 chrIV 1034463 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.654;QD=25.82;ReadPosRankSum=1.680;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3434,346,0 chrIV 1034538 . T C 2301 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.48;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2334,240,0 chrIV 1034551 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.95;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2478,240,0 chrIV 1034709 . T C 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=6.4935;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.728;QD=23.62;ReadPosRankSum=1.700;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2560,270,0 chrIV 1034904 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=27.57;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3501,346,0 chrIV 1035084 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.402;QD=23.70;ReadPosRankSum=1.704;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2996,303,0 chrIV 1035309 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4341,445,0 chrIV 1035606 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=25.43;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3560,346,0 chrIV 1035627 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=21.65;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3291,334,0 chrIV 1035668 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=4.188;HaplotypeScore=131.2673;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;MQRankSum=-1.710;QD=17.27;ReadPosRankSum=1.645;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2796,280,0 chrIV 1035697 . A C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=0.484;QD=18.39;ReadPosRankSum=1.713;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3438,349,0 chrIV 1035801 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=134;Dels=0.00;FS=2.972;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.268;QD=25.72;ReadPosRankSum=2.413;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3446,355,0 chrIV 1035891 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=20.88;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2580,267,0 chrIV 1035905 . T A 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.030;QD=21.75;ReadPosRankSum=1.702;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2578,253,0 chrIV 1035987 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.113;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.140;QD=25.27;ReadPosRankSum=2.398;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3639,370,0 chrIV 1036063 . A C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.547;QD=24.04;ReadPosRankSum=1.641;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2822,291,0 chrIV 1036126 . C G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=26.70;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3417,346,0 chrIV 1036179 . A C 3134 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.34;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3167,325,0 chrIV 1036257 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.76;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3225,322,0 chrIV 1036312 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.46;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3063,295,0 chrIV 1036351 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.49;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2852,283,0 chrIV 1036384 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.51;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3146,310,0 chrIV 1036426 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.75;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3239,322,0 chrIV 1036669 . T C 5436.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5436,556,0 chrIV 1036886 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.3451;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.80;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4860,487,0 chrIV 1037080 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.94;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3555,349,0 chrIV 1037205 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=187;Dels=0.00;FS=7.406;HaplotypeScore=12.9731;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.296;QD=24.16;ReadPosRankSum=2.371;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4518,463,0 chrIV 1037262 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.209;QD=24.79;ReadPosRankSum=1.707;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3470,355,0 chrIV 1037347 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.058;QD=23.17;ReadPosRankSum=1.709;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3453,358,0 chrIV 1037511 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3090,301,0 chrIV 1037652 . C A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.70;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4219,415,0 chrIV 1037710 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.13;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3853,367,0 chrIV 1037923 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.10;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2853,294,0 chrIV 1037990 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.67;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3100,313,0 chrIV 1038058 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=22.12;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1825,183,0 chrIV 1038059 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.71;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1813,183,0 chrIV 1038316 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=138;Dels=0.01;FS=6.252;HaplotypeScore=29.8122;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.629;QD=26.01;ReadPosRankSum=1.706;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3590,373,0 chrIV 1038405 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.841;QD=23.96;ReadPosRankSum=1.584;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3378,346,0 chrIV 1038463 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.19;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4313,448,0 chrIV 1038620 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.4349;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=23.28;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4423,442,0 chrIV 1038866 . T A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.27;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3816,382,0 chrIV 1039385 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.515;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.101;QD=24.51;ReadPosRankSum=1.710;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3823,400,0 chrIV 1039745 . C A 2139 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.25;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2172,225,0 chrIV 1040424 . T G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=149;Dels=0.00;FS=6.049;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.938;QD=22.22;ReadPosRankSum=2.911;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:3,143:149:99:3311,345,0 chrIV 1040434 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.00;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3344,342,0 chrIV 1040438 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.20;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3286,345,0 chrIV 1040471 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=3.399;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.723;QD=22.30;ReadPosRankSum=1.712;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3947,409,0 chrIV 1040522 . A G 5347.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.96;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5347,559,0 chrIV 1040595 . A C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.871;QD=24.53;ReadPosRankSum=1.689;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:4023,412,0 chrIV 1040643 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.65;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3655,378,0 chrIV 1040645 . A C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.261;QD=19.16;ReadPosRankSum=1.713;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3582,384,0 chrIV 1040726 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.91;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4697,469,0 chrIV 1040939 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=3.195;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.678;QD=24.65;ReadPosRankSum=1.714;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4782,487,0 chrIV 1041086 . T C 5749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.3328;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.314;QD=24.16;ReadPosRankSum=1.717;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:1,231:238:99:5749,589,0 chrIV 1041278 . G A 5250.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.53;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5250,520,0 chrIV 1041560 . G A 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.517;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0165;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.354;QD=23.06;ReadPosRankSum=0.993;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4911,502,0 chrIV 1041581 . A T 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.677;QD=24.25;ReadPosRankSum=1.696;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4632,469,0 chrIV 1041853 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.23;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3275,336,0 chrIV 1041863 . T A 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.344;QD=21.71;ReadPosRankSum=1.684;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3159,327,0 chrIV 1041959 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.86;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3474,355,0 chrIV 1042394 . G A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1936;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.98;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4613,463,0 chrIV 1042427 . G T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.19;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4322,433,0 chrIV 1042469 . G A 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.645;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=16.0769;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.030;QD=19.63;ReadPosRankSum=0.713;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3036,309,0 chrIV 1042736 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.91;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3610,373,0 chrIV 1042968 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.00;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1505,156,0 chrIV 1043012 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.20;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2049,207,0 chrIV 1043069 . A G 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.531;QD=22.23;ReadPosRankSum=1.682;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1567,165,0 chrIV 1043113 . G A 400 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=9.0093;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.18;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:433,45,0 chrIV 1043233 . A T 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.346;QD=26.37;ReadPosRankSum=1.299;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:2143,222,0 chrIV 1043299 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.65;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2227,219,0 chrIV 1043548 . T C 4495.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.05;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4495,472,0 chrIV 1043662 . A G 6767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=257;Dels=0.00;FS=3.381;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.263;QD=26.33;ReadPosRankSum=1.705;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:6767,668,0 chrIV 1043992 . T A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0804;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.26;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5041,496,0 chrIV 1044571 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.76;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2908,286,0 chrIV 1044635 . C A 2330 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.2438;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2363,231,0 chrIV 1047046 . G A 5344.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.55;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5344,532,0 chrIV 1047131 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4475,471,0 chrIV 1049568 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3501,355,0 chrIV 1051775 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.21;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4642,460,0 chrIV 1051797 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.8229;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.05;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4702,475,0 chrIV 1052088 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4034,415,0 chrIV 1052765 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2908,286,0 chrIV 1052996 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2446,249,0 chrIV 1053054 . A C 2127 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2160,219,0 chrIV 1053228 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3313,319,0 chrIV 1053286 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6090;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.56;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3984,397,0 chrIV 1053397 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4169,412,0 chrIV 1053528 . C T 4154.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.48;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4154,409,0 chrIV 1053698 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.72;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3411,337,0 chrIV 1053747 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.97;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3296,337,0 chrIV 1053891 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=113;Dels=0.00;FS=5.560;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.306;QD=24.07;ReadPosRankSum=2.937;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:3,109:113:99:2753,279,0 chrIV 1053946 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.87;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2617,258,0 chrIV 1054503 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1957;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.47;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3708,385,0 chrIV 1054527 . T G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.01;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3649,373,0 chrIV 1054662 . A C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.256;QD=24.82;ReadPosRankSum=2.842;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:2093,213,0 chrIV 1054827 . T G 573 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=19.76;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:606,63,0 chrIV 1054843 . C T 423 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=3.6603;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.92;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:456,48,0 chrIV 1054894 . C A 354 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=16.09;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:39:387,39,0 chrIV 1055184 . G A 53.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.411;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.721;QD=0.37;ReadPosRankSum=-3.213;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:140,5:145:9:86,9,0 chrIV 1055204 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.08;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3125,316,0 chrIV 1055562 . G A 8535.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=21.4873;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.42;SB=-4.075e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:8535,845,0 chrIV 1055660 . C A 6268.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.22;SB=-3.444e+03 GT:AD:DP:GQ:PL 1/1:0,309:310:99:6268,634,0 chrIV 1055678 . T C 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.390;DP=317;Dels=0.00;FS=8.318;HaplotypeScore=17.2674;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.715;QD=18.13;ReadPosRankSum=3.434;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:4,312:317:99:5748,621,0 chrIV 1055826 . T G 5927.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.43;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5927,628,0 chrIV 1055999 . A C 4961.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1960;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=25.31;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4961,523,0 chrIV 1056052 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=6.638;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-1.247;QD=20.34;ReadPosRankSum=2.414;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2860,303,0 chrIV 1056091 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1865;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=7.48;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:1304,147,0 chrIV 1056097 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=181;Dels=0.00;FS=5.237;HaplotypeScore=8.2744;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-1.508;QD=6.94;ReadPosRankSum=2.939;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:1290,147,0 chrIV 1056107 . T C 352.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DP=179;Dels=0.00;FS=41.370;HaplotypeScore=6.9506;MLEAC=1;MLEAF=0.500;MQ=40.76;MQ0=0;MQRankSum=-2.186;QD=1.97;ReadPosRankSum=-9.590;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:125,54:179:99:382,0,801 chrIV 1056135 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=12.33;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1846,180,0 chrIV 1056271 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=21.55;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1886,198,0 chrIV 1056272 . T C 1821 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=21.94;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1854,192,0 chrIV 1056299 . C A 1771 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=19.25;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1804,189,0 chrIV 1056324 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=16.97;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1628,162,0 chrIV 1056332 . T C 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=95;Dels=0.00;FS=5.649;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-0.649;QD=16.89;ReadPosRankSum=2.926;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1638,168,0 chrIV 1056448 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.223;QD=24.11;ReadPosRankSum=2.396;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3400,346,0 chrIV 1056784 . G A 7140.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.9032;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.15;SB=-3.454e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:7140,691,0 chrIV 1057123 . T C 6015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=242;Dels=0.00;FS=2.862;HaplotypeScore=16.6808;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.775;QD=24.86;ReadPosRankSum=2.429;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:6015,628,0 chrIV 1057366 . C T 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.987;QD=23.58;ReadPosRankSum=1.559;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4715,469,0 chrIV 1057426 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.34;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3967,409,0 chrIV 1057517 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=25.02;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3828,379,0 chrIV 1057526 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.866;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=1.526;QD=22.57;ReadPosRankSum=1.686;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3431,352,0 chrIV 1057573 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=21.33;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2806,306,0 chrIV 1057601 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.30;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2419,246,0 chrIV 1057603 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=21.05;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2369,246,0 chrIV 1057627 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.37;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2274,240,0 chrIV 1057712 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=24.06;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1765,180,0 chrIV 1057776 . G A 1237 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=0.133;QD=23.79;ReadPosRankSum=-0.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1270,132,0 chrIV 1057799 . T C 1057 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=20.33;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1090,120,0 chrIV 1057818 . T A 1022 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=20.86;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1055,108,0 chrIV 1057855 . T C 579 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=19.97;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:612,63,0 chrIV 1057856 . G A 617 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=21.28;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:650,63,0 chrIV 1057925 . T A 110.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=10.9590;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=6.89;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:143,15,0 chrIV 1057986 . A G 748 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.68;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:81:781,81,0 chrIV 1058083 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.35;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1543,159,0 chrIV 1058179 . A G 2939 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.78;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2972,304,0 chrIV 1058335 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.99;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4184,409,0 chrIV 1058545 . G T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4363,442,0 chrIV 1058617 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4229,421,0 chrIV 1058864 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=26.24;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3647,355,0 chrIV 1059080 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.53;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2127,222,0 chrIV 1059094 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.37;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2203,231,0 chrIV 1059399 . G C 2554 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.04;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2587,261,0 chrIV 1059459 . A C 2962 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.98;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2995,304,0 chrIV 1059662 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.57;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4053,400,0 chrIV 1059944 . G A 884.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.861;DP=253;Dels=0.00;FS=0.472;HaplotypeScore=364.0244;MLEAC=1;MLEAF=0.500;MQ=39.23;MQ0=0;MQRankSum=6.496;QD=3.49;ReadPosRankSum=-9.582;SB=-7.940e+02 GT:AD:DP:GQ:PL 0/1:153,99:252:99:914,0,256 chrIV 1059947 . A G 688.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.679;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=368.2111;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=0;MQRankSum=6.936;QD=2.77;ReadPosRankSum=-10.664;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:154,93:248:99:718,0,277 chrIV 1059955 . A G 660.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DP=225;Dels=0.00;FS=0.562;HaplotypeScore=347.6047;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=0;MQRankSum=0.350;QD=2.93;ReadPosRankSum=-9.168;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:166,58:225:99:690,0,239 chrIV 1059983 . A T 2168 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=11.66;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2201,219,0 chrIV 1060010 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=7.560;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.356;QD=19.28;ReadPosRankSum=2.226;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3394,349,0 chrIV 1071689 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.541;QD=25.43;ReadPosRankSum=1.713;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4629,472,0 chrIV 1071771 . G A 5650.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5650,580,0 chrIV 1072384 . G C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.90;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3573,381,0 chrIV 1072576 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.96;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2554,264,0 chrIV 1072962 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.51;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3456,340,0 chrIV 1077718 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.47;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2889,306,0 chrIV 1077851 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.549;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.318;QD=24.74;ReadPosRankSum=1.703;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3026,315,0 chrIV 1080523 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3703,367,0 chrIV 1091966 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.46;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3411,352,0 chrIV 1095148 . T G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.352;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.866;QD=25.05;ReadPosRankSum=1.680;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3331,348,0 chrIV 1095215 . A T 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.549;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.732;QD=23.74;ReadPosRankSum=1.674;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2882,286,0 chrIV 1095230 . T G 2830 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.64;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2863,291,0 chrIV 1095542 . T G 2274 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.20;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2307,231,0 chrIV 1101892 . G C 2294 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=25.78;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2327,234,0 chrIV 1102257 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.56;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1653,171,0 chrIV 1102674 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.9719;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.99;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2888,297,0 chrIV 1102795 . T G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.631;QD=25.69;ReadPosRankSum=1.698;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2679,279,0 chrIV 1102947 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2917,286,0 chrIV 1103480 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2892,286,0 chrIV 1103531 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=106;Dels=0.00;FS=6.668;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.301;QD=23.30;ReadPosRankSum=2.356;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2503,258,0 chrIV 1104014 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2543,252,0 chrIV 1104401 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.95;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3251,322,0 chrIV 1104470 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.69;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3766,373,0 chrIV 1104914 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.010;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.102;QD=25.45;ReadPosRankSum=1.669;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2832,288,0 chrIV 1104929 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.58;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2638,264,0 chrIV 1104966 . T G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.316;DP=101;Dels=0.00;FS=3.565;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.594;QD=22.43;ReadPosRankSum=0.139;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2298,240,0 chrIV 1105164 . C T 5618.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0007;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.67;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5618,559,0 chrIV 1105249 . A T 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=141;Dels=0.00;FS=9.997;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.793;QD=24.81;ReadPosRankSum=2.950;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3498,358,0 chrIV 1105583 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2925,289,0 chrIV 1105780 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2484,241,0 chrIV 1106241 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=164;Dels=0.00;FS=5.750;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.932;QD=24.96;ReadPosRankSum=2.945;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:4093,421,0 chrIV 1106617 . C G 2789 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2822,294,0 chrIV 1107083 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.48;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2505,247,0 chrIV 1107118 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.49;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3441,340,0 chrIV 1107137 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.412;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.426;QD=22.81;ReadPosRankSum=1.661;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3353,343,0 chrIV 1107444 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3321,340,0 chrIV 1107805 . G A 6384.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.6859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6384,619,0 chrIV 1108114 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.66;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3675,379,0 chrIV 1108484 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.01;FS=6.558;HaplotypeScore=13.0652;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=1.646;QD=23.35;ReadPosRankSum=2.403;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3759,388,0 chrIV 1108662 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.4894;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.91;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2960,295,0 chrIV 1108673 . C G 3143 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.38;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3176,328,0 chrIV 1108696 . C G 3801.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.77;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3801,382,0 chrIV 1108875 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=24.68;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3529,352,0 chrIV 1109358 . T C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=209;Dels=0.00;FS=6.740;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.741;QD=25.30;ReadPosRankSum=2.343;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:5288,550,0 chrIV 1109568 . T C 6270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=250;Dels=0.00;FS=2.911;HaplotypeScore=15.4539;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.370;QD=25.08;ReadPosRankSum=2.430;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:6270,646,0 chrIV 1109736 . A C 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.661;QD=23.87;ReadPosRankSum=1.715;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4964,502,0 chrIV 1109781 . A G 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.169;QD=24.11;ReadPosRankSum=1.713;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4460,460,0 chrIV 1109890 . T G 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.374;QD=23.85;ReadPosRankSum=0.936;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2108,201,0 chrIV 1110953 . A C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=147;Dels=0.00;FS=4.320;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.119;QD=26.10;ReadPosRankSum=1.708;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3837,397,0 chrIV 1111002 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4159,438,0 chrIV 1111246 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3701,379,0 chrIV 1113023 . T A 2987 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.75;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3020,304,0 chrIV 1113112 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.79;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4358,430,0 chrIV 1113224 . C T 4868.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.66;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4868,493,0 chrIV 1113548 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=3.011;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.567;QD=24.55;ReadPosRankSum=2.392;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4223,427,0 chrIV 1113753 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4688;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.830;QD=23.07;ReadPosRankSum=1.712;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3898,397,0 chrIV 1113766 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=182;Dels=0.00;FS=6.241;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.153;QD=22.05;ReadPosRankSum=2.422;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4013,418,0 chrIV 1113867 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.7585;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3956,394,0 chrIV 1118495 . C G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6474;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.72;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:128:99:3292,339,0 chrIV 1121563 . A C 2827 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2860,289,0 chrIV 1123442 . G C 4394.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4394,451,0 chrIV 1124047 . T C 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=231;Dels=0.00;FS=11.825;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.759;QD=24.87;ReadPosRankSum=2.890;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:5746,586,0 chrIV 1124659 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=6.945;HaplotypeScore=10.6006;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.906;QD=26.28;ReadPosRankSum=2.420;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4337,436,0 chrIV 1126196 . T C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.174;HaplotypeScore=8.1961;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.372;QD=22.18;ReadPosRankSum=1.706;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3049,318,0 chrIV 1127544 . C G 5487.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5487,562,0 chrIV 1127922 . C T 8285.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=23.7732;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.49;SB=-4.530e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:8285,818,0 chrIV 1128108 . G A 5778.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.02;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5778,595,0 chrIV 1128837 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=175;Dels=0.00;FS=8.904;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.748;QD=22.57;ReadPosRankSum=3.319;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:4,170:175:99:3950,412,0 chrIV 1130680 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1803,177,0 chrIV 1131441 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7417;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.28;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3642,381,0 chrIV 1132818 . G T 2972 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.30;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3005,304,0 chrIV 1133602 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.58;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4451,442,0 chrIV 1135584 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5707;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.99;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2012,195,0 chrIV 1137761 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4667,457,0 chrIV 1139004 . C G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.91;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4409,457,0 chrIV 1140165 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.73;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4223,433,0 chrIV 1141284 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.16;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2004,198,0 chrIV 1141710 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.738;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.593;QD=26.55;ReadPosRankSum=1.709;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:4009,409,0 chrIV 1144484 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3427,334,0 chrIV 1149047 . A C 6423.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=15.2649;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.97;SB=-3.231e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:6423,661,0 chrIV 1151270 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.00;FS=3.665;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=1;MQRankSum=0.727;QD=24.91;ReadPosRankSum=1.663;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:2599,264,0 chrIV 1154233 . T G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;MQRankSum=-1.512;QD=27.02;ReadPosRankSum=2.408;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:3221,325,0 chrIV 1156963 . A G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.119;QD=22.86;ReadPosRankSum=1.613;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1382,141,0 chrIV 1157962 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.81;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3325,340,0 chrIV 1161495 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.44;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1585,165,0 chrIV 1165262 . T A 2691 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.81;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2724,276,0 chrIV 1166520 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.56;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4516,448,0 chrIV 1167913 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.87;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4464,460,0 chrIV 1167961 . A G 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=226;Dels=0.00;FS=3.021;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.901;QD=22.24;ReadPosRankSum=2.383;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:2,220:226:99:5026,520,0 chrIV 1168889 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3643,361,0 chrIV 1171385 . C T 5885.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.2009;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.81;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,252:258:99:5885,583,0 chrIV 1171430 . G C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4313,454,0 chrIV 1171794 . C A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3686,364,0 chrIV 1171863 . T A 3056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3089,310,0 chrIV 1172380 . A G 5153.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.51;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5153,526,0 chrIV 1172576 . G C 5678.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.24;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5678,583,0 chrIV 1172908 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.798;QD=23.27;ReadPosRankSum=1.693;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4165,427,0 chrIV 1173007 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.46;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4763,490,0 chrIV 1173622 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.02;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3156,307,0 chrIV 1173661 . G C 2453 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.61;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2486,264,0 chrIV 1173670 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.00;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2679,270,0 chrIV 1173678 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.04;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2758,291,0 chrIV 1173839 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.64;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3795,376,0 chrIV 1173894 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=26.95;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4554,451,0 chrIV 1174054 . C A 6137.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.6770;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.46;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:6137,610,0 chrIV 1174213 . T C 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=207;Dels=0.03;FS=4.949;HaplotypeScore=83.7669;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.143;QD=23.62;ReadPosRankSum=1.697;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4890,511,0 chrIV 1174270 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.02;FS=0.000;HaplotypeScore=37.7165;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.02;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3959,418,0 chrIV 1174282 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.63;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3768,382,0 chrIV 1174395 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.22;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2898,306,0 chrIV 1174496 . C G 2488 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.83;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2521,255,0 chrIV 1174544 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.41;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2565,258,0 chrIV 1174551 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=22.55;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2514,249,0 chrIV 1174575 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=7.822;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.526;QD=21.07;ReadPosRankSum=2.405;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2351,243,0 chrIV 1174611 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.63;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2681,279,0 chrIV 1174695 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=22.68;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2324,231,0 chrIV 1174702 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.90;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2179,228,0 chrIV 1174722 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.830;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.378;QD=19.49;ReadPosRankSum=2.352;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2001,204,0 chrIV 1175302 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=28.38;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1764,171,0 chrIV 1175327 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=26.79;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1801,174,0 chrIV 1175990 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=4.214;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.091;QD=24.83;ReadPosRankSum=1.659;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2392,249,0 chrIV 1176138 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.58;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1900,189,0 chrIV 1176852 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.429;QD=26.36;ReadPosRankSum=2.412;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3400,343,0 chrIV 1177557 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.47;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3309,331,0 chrIV 1178350 . C A 970 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=10.10;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1003,105,0 chrIV 1178975 . C T 4717.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4717,466,0 chrIV 1179516 . T C 5511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=224;Dels=0.00;FS=4.487;HaplotypeScore=11.9219;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.874;QD=24.60;ReadPosRankSum=1.716;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5511,562,0 chrIV 1179803 . A T 3112 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3145,336,0 chrIV 1179838 . T A 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.454;QD=25.68;ReadPosRankSum=1.704;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3166,319,0 chrIV 1180870 . T A 3012 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.53;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3045,304,0 chrIV 1181427 . A T 1517 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.16;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1550,153,0 chrIV 1181733 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=3.020;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.160;QD=24.27;ReadPosRankSum=2.382;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3543,364,0 chrIV 1183007 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.36;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3321,328,0 chrIV 1183454 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.66;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4613,460,0 chrIV 1183684 . C T 6203.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.7713;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.28;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:6203,625,0 chrIV 1184604 . T A 3174 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.60;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3207,319,0 chrIV 1184776 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3949,403,0 chrIV 1184872 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=186;Dels=0.00;FS=3.001;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.141;QD=23.77;ReadPosRankSum=2.383;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4422,460,0 chrIV 1185640 . G A 5292.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5292,529,0 chrIV 1186629 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.183;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.463;QD=25.48;ReadPosRankSum=1.706;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3338,340,0 chrIV 1187416 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.73;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2477,249,0 chrIV 1188257 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.265;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.859;QD=25.53;ReadPosRankSum=1.704;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3173,325,0 chrIV 1188416 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.79;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3297,337,0 chrIV 1188554 . C T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.04;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4353,424,0 chrIV 1188878 . C T 4925.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.20;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4925,484,0 chrIV 1189029 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.4062;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.81;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3123,313,0 chrIV 1189030 . A T 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8288;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.784;QD=19.99;ReadPosRankSum=2.110;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3071,304,0 chrIV 1189130 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.54;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3755,376,0 chrIV 1189463 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.37;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2113,216,0 chrIV 1189499 . T C 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.718;QD=23.63;ReadPosRankSum=1.690;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1994,207,0 chrIV 1189652 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.45;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2185,222,0 chrIV 1189918 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.25;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1391,141,0 chrIV 1189989 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=61;Dels=0.00;FS=6.021;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.270;QD=23.36;ReadPosRankSum=1.675;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1458,150,0 chrIV 1190196 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=6.126;HaplotypeScore=4.9899;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.460;QD=25.86;ReadPosRankSum=2.944;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3265,336,0 chrIV 1190854 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.71;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3522,349,0 chrIV 1192086 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=166;Dels=0.00;FS=5.320;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.206;QD=26.13;ReadPosRankSum=2.897;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:4338,442,0 chrIV 1196619 . A G 3160 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1230;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.50;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3193,328,0 chrIV 1197080 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=2.790;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.106;QD=24.95;ReadPosRankSum=2.400;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4940,502,0 chrIV 1197644 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3766,385,0 chrIV 1198548 . G C 5135.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5135,526,0 chrIV 1202460 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3006,295,0 chrIV 1212698 . A T 897 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4629;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.59;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:96:930,96,0 chrIV 1213606 . T G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.762;QD=26.09;ReadPosRankSum=1.677;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3313,337,0 chrIV 1217031 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.291;QD=26.65;ReadPosRankSum=1.686;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3971,403,0 chrIV 1219509 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=103;Dels=0.00;FS=6.146;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=23.27;ReadPosRankSum=2.931;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,99:103:99:2430,252,0 chrIV 1219871 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.40;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2473,246,0 chrIV 1220178 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=7.420;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.415;QD=24.61;ReadPosRankSum=2.416;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3618,364,0 chrIV 1220405 . C G 3386.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.46;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3386,340,0 chrIV 1220697 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.19;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2888,283,0 chrIV 1220957 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2079,207,0 chrIV 1221065 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1965,192,0 chrIV 1222542 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2886,300,0 chrIV 1223971 . C A 2127 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.02;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2160,216,0 chrIV 1235582 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3100;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.59;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4479,448,0 chrIV 1235594 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.54;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4190,433,0 chrIV 1237546 . T A 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.559;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.558;QD=22.53;ReadPosRankSum=1.674;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1362,135,0 chrIV 1238608 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.09;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3421,352,0 chrIV 1238647 . G A 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.767;QD=21.03;ReadPosRankSum=-0.767;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2641,251,0 chrIV 1238648 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.87;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2869,280,0 chrIV 1239039 . T C 27.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;DP=12;Dels=0.00;FS=7.404;HaplotypeScore=9.9955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.296;QD=2.31;ReadPosRankSum=-0.118;SB=1.27 GT:AD:DP:GQ:PL 1/1:2,9:12:6:59,6,0 chrIV 1239087 . T C 568 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:63:601,63,0 chrIV 1239354 . C A 1725 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1758,174,0 chrIV 1239990 . T A 1205 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.63;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1238,132,0 chrIV 1240134 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1816,186,0 chrIV 1240175 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.00;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2733,271,0 chrIV 1240227 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.607;QD=26.43;ReadPosRankSum=1.701;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2967,301,0 chrIV 1240251 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.87;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3269,322,0 chrIV 1240320 . C T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4025,400,0 chrIV 1240455 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.74;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5071,514,0 chrIV 1240551 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=199;Dels=0.00;FS=6.451;HaplotypeScore=12.0164;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.066;QD=21.35;ReadPosRankSum=1.776;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4249,425,0 chrIV 1240919 . C T 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.9643;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.529;QD=17.36;ReadPosRankSum=0.481;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1283,126,0 chrIV 1240974 . G A 209.01 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=4.27;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:27:242,27,0 chrIV 1241008 . C G 414 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=11.50;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:45:447,45,0 chrIV 1241016 . C T 437 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=12.49;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:48:470,48,0 chrIV 1241303 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.279;QD=25.25;ReadPosRankSum=1.679;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3282,339,0 chrIV 1243200 . C A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=27.87;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3985,400,0 chrIV 1247432 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.05;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3882,385,0 chrIV 1247992 . A G 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.444;QD=23.12;ReadPosRankSum=1.675;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1420,147,0 chrIV 1248126 . A G 2524 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.04;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2557,258,0 chrIV 1248206 . C T 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.7061;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.315;QD=25.62;ReadPosRankSum=-0.709;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2288,231,0 chrIV 1248433 . G A 4967.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.47;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4967,487,0 chrIV 1248513 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.47;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2864,300,0 chrIV 1248523 . A C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7594;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.350;QD=21.87;ReadPosRankSum=1.644;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2614,239,0 chrIV 1249116 . T C 4879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.032;QD=25.15;ReadPosRankSum=1.714;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4879,508,0 chrIV 1250650 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8499;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.472;QD=25.47;ReadPosRankSum=1.687;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3974,388,0 chrIV 1252116 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.696;QD=25.17;ReadPosRankSum=2.400;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3826,388,0 chrIV 1253397 . T C 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=214;Dels=0.00;FS=6.374;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.256;QD=25.00;ReadPosRankSum=2.415;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5351,556,0 chrIV 1261102 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2683;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4212,430,0 chrIV 1261386 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.63;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4101,418,0 chrIV 1263076 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4585;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.23;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3601,361,0 chrIV 1263265 . T G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.09;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3738,379,0 chrIV 1267740 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=168;Dels=0.00;FS=3.029;HaplotypeScore=15.2185;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.714;QD=24.71;ReadPosRankSum=2.420;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:4151,436,0 chrIV 1267782 . T A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=26.20;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3746,370,0 chrIV 1267950 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1136;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.295;QD=23.89;ReadPosRankSum=1.661;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3535,367,0 chrIV 1267989 . A T 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.350;QD=24.01;ReadPosRankSum=1.711;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3914,385,0 chrIV 1268154 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.903;QD=21.77;ReadPosRankSum=1.659;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3168,333,0 chrIV 1268315 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.838;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.331;QD=26.09;ReadPosRankSum=1.706;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3444,352,0 chrIV 1268647 . C A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.9492;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.44;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3861,385,0 chrIV 1269345 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.5437;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.39;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4791,505,0 chrIV 1269577 . C T 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=71;Dels=0.03;FS=2.962;HaplotypeScore=34.9442;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.805;QD=22.18;ReadPosRankSum=2.128;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1608,156,0 chrIV 1269708 . A C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=11.9554;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.433;QD=17.98;ReadPosRankSum=1.670;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1094,111,0 chrIV 1269832 . T A 1627 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.2459;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.29;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1660,162,0 chrIV 1271082 . C A 5244.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.48;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:5244,523,0 chrIV 1271701 . T A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.59;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3889,408,0 chrIV 1271755 . G C 3069 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.61;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3102,324,0 chrIV 1271758 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.78;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3353,331,0 chrIV 1271812 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.40;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3145,316,0 chrIV 1271941 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0816;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.31;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3048,301,0 chrIV 1271979 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=2.989;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=1.065;QD=24.09;ReadPosRankSum=2.395;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:3300,331,0 chrIV 1271999 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.07;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3018,307,0 chrIV 1272164 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.41;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2163,213,0 chrIV 1272748 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.629;QD=25.50;ReadPosRankSum=1.710;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4004,406,0 chrIV 1273219 . A T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3286,328,0 chrIV 1273337 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=6.118;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.373;QD=24.06;ReadPosRankSum=2.770;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3089,318,0 chrIV 1273367 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.54;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2830,282,0 chrIV 1273683 . C A 2793 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2826,280,0 chrIV 1273940 . A G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.650;QD=23.26;ReadPosRankSum=1.689;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1917,195,0 chrIV 1274092 . C T 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=92;Dels=0.00;FS=3.632;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.577;QD=23.29;ReadPosRankSum=1.501;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2176,213,0 chrIV 1274124 . G C 2209 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.01;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2242,228,0 chrIV 1274423 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.23;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1965,207,0 chrIV 1274484 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.63;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2176,219,0 chrIV 1274509 . T A 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.047;QD=23.32;ReadPosRankSum=1.670;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2621,273,0 chrIV 1274626 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=0.035;QD=25.73;ReadPosRankSum=1.661;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2580,261,0 chrIV 1274677 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.62;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2655,267,0 chrIV 1274715 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=23.03;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3409,340,0 chrIV 1274773 . G A 2822 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=21.38;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2855,294,0 chrIV 1274775 . C T 2859 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=22.34;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2892,294,0 chrIV 1274778 . T C 2811 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=20.98;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2844,294,0 chrIV 1274808 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=18.27;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2079,216,0 chrIV 1274844 . T C 1705 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.061;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-0.469;QD=15.64;ReadPosRankSum=1.700;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:1738,180,0 chrIV 1274848 . C T 1527 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=0.945;QD=13.88;ReadPosRankSum=1.512;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1560,146,0 chrIV 1274852 . A G 1683 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=5.484;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.287;QD=15.44;ReadPosRankSum=2.899;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1716,177,0 chrIV 1274867 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.01;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1924,198,0 chrIV 1274975 . A G 2140 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=23.52;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2173,222,0 chrIV 1274988 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=22.18;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1918,195,0 chrIV 1275009 . A T 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-0.953;QD=20.84;ReadPosRankSum=1.646;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1700,171,0 chrIV 1275068 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=86;Dels=0.00;FS=3.023;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=1.963;QD=18.84;ReadPosRankSum=2.393;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1653,174,0 chrIV 1275069 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=3.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=1.725;QD=20.20;ReadPosRankSum=2.392;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1750,180,0 chrIV 1275540 . T C 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.607;QD=25.00;ReadPosRankSum=1.701;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5524,571,0 chrIV 1275780 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3987,409,0 chrIV 1276281 . T C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=84;Dels=0.00;FS=7.084;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.767;QD=23.01;ReadPosRankSum=2.361;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1966,201,0 chrIV 1276339 . C A 1912 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.49;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1945,192,0 chrIV 1276486 . A G 2765 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2798,288,0 chrIV 1276608 . A G 2974 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.65;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3007,309,0 chrIV 1277231 . C A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.80;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:4031,394,0 chrIV 1277282 . G T 2087 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2120,213,0 chrIV 1277377 . A T 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.126;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.342;QD=18.34;ReadPosRankSum=1.664;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2820,288,0 chrIV 1277378 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.44;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2781,288,0 chrIV 1278481 . C G 4200.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2783;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.95;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4200,442,0 chrIV 1278950 . A G 7008.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.9887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.39;SB=-3.582e+03 GT:AD:DP:GQ:PL 1/1:0,273:276:99:7008,709,0 chrIV 1280606 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.98;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2761,271,0 chrIV 1280622 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.70;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2439,249,0 chrIV 1282163 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.03;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3379,346,0 chrIV 1283387 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=3.216;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.323;QD=24.57;ReadPosRankSum=1.714;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4841,493,0 chrIV 1283766 . G T 1409 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1442,153,0 chrIV 1284111 . T A 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.044;QD=27.33;ReadPosRankSum=2.365;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1618,168,0 chrIV 1285878 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.538;QD=26.29;ReadPosRankSum=1.672;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3083,313,0 chrIV 1286071 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.364;QD=24.78;ReadPosRankSum=1.710;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:4014,418,0 chrIV 1286166 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4354,427,0 chrIV 1286477 . A C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=142;Dels=0.00;FS=3.169;HaplotypeScore=12.6449;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.486;QD=23.49;ReadPosRankSum=1.707;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3336,340,0 chrIV 1290073 . A C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.176;QD=24.63;ReadPosRankSum=1.707;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3399,349,0 chrIV 1291631 . T G 5391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=227;Dels=0.00;FS=3.648;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.656;QD=23.75;ReadPosRankSum=0.923;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5391,565,0 chrIV 1292515 . G C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.47;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3670,382,0 chrIV 1301046 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4564,466,0 chrIV 1302530 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.82;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2441,252,0 chrIV 1302651 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.96;MQ0=0;QD=24.09;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1912,195,0 chrIV 1302786 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2222,231,0 chrIV 1304493 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.34;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3091,316,0 chrIV 1305496 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.87;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2769,285,0 chrIV 1307724 . A G 4574.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.385;DP=816;Dels=0.00;FS=3.826;HaplotypeScore=40.2905;MLEAC=1;MLEAF=0.500;MQ=37.92;MQ0=52;MQRankSum=7.085;QD=5.61;ReadPosRankSum=3.697;SB=-2.678e+03 GT:AD:DP:GQ:PL 0/1:507,307:816:99:4574,0,6918 chrIV 1307877 . G A 2044.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.455;DP=336;Dels=0.00;FS=458.019;HaplotypeScore=12.2655;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=72;MQRankSum=9.468;QD=6.08;ReadPosRankSum=2.899;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:128,208:336:99:2074,0,124 chrIV 1307879 . C T 1697.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.852;DP=333;Dels=0.00;FS=463.162;HaplotypeScore=10.1065;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=72;MQRankSum=9.629;QD=5.10;ReadPosRankSum=2.674;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:130,200:333:99:1727,0,139 chrIV 1307883 . T C 1900.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.938;DP=344;Dels=0.00;FS=498.843;HaplotypeScore=8.8781;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=87;MQRankSum=10.145;QD=5.52;ReadPosRankSum=2.109;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:125,219:344:99:1930,0,143 chrIV 1307967 . T C 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;DP=297;Dels=0.00;FS=120.314;HaplotypeScore=9.2781;MLEAC=1;MLEAF=0.500;MQ=9.49;MQ0=173;MQRankSum=6.223;QD=0.30;ReadPosRankSum=0.137;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:252,43:297:99:118,0,190 chrIV 1308011 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=18;QD=0.83;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:9,12:25:6:52,6,0 chrIV 1308045 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.48;MQ0=25;QD=0.72;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:9,21:36:6:57,6,0 chrIV 1308051 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.60;MQ0=63;MQRankSum=-0.908;QD=0.27;ReadPosRankSum=3.697;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:29,63:92:6:56,6,0 chrIV 1308135 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DP=1000;DS;Dels=0.00;FS=13.002;HaplotypeScore=48.2662;MLEAC=1;MLEAF=0.500;MQ=10.39;MQ0=637;MQRankSum=-0.063;QD=0.07;ReadPosRankSum=-1.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:919,81:1000:97:97,0,2101 chrIV 1308387 . C T 573.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.345;DP=630;Dels=0.00;FS=16.820;HaplotypeScore=87.5477;MLEAC=1;MLEAF=0.500;MQ=13.97;MQ0=408;MQRankSum=7.492;QD=0.91;ReadPosRankSum=5.229;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:497,131:630:99:603,0,635 chrIV 1308423 . A G 412.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.695;DP=751;Dels=0.00;FS=65.804;HaplotypeScore=6.1881;MLEAC=1;MLEAF=0.500;MQ=13.95;MQ0=487;MQRankSum=8.605;QD=0.55;ReadPosRankSum=-3.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:650,101:751:99:442,0,1721 chrIV 1308426 . A T 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.687;DP=683;Dels=0.00;FS=58.032;HaplotypeScore=7.8162;MLEAC=1;MLEAF=0.500;MQ=12.47;MQ0=477;MQRankSum=8.516;QD=0.22;ReadPosRankSum=5.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:630,45:683:99:180,0,1761 chrIV 1308427 . C T 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.433;DP=697;Dels=0.00;FS=55.223;HaplotypeScore=7.8886;MLEAC=1;MLEAF=0.500;MQ=12.35;MQ0=491;MQRankSum=8.143;QD=0.06;ReadPosRankSum=5.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:650,44:697:72:72,0,1811 chrIV 1308431 . C T 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;DP=690;Dels=0.00;FS=61.532;HaplotypeScore=8.1526;MLEAC=1;MLEAF=0.500;MQ=12.21;MQ0=486;MQRankSum=8.729;QD=0.16;ReadPosRankSum=2.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:642,44:690:99:137,0,1747 chrIV 1308434 . C T 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;DP=702;Dels=0.00;FS=61.508;HaplotypeScore=9.1739;MLEAC=1;MLEAF=0.500;MQ=12.07;MQ0=499;MQRankSum=8.274;QD=0.17;ReadPosRankSum=0.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:654,45:702:99:148,0,1724 chrIV 1308436 . A G 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.501;DP=696;Dels=0.00;FS=61.711;HaplotypeScore=9.2721;MLEAC=1;MLEAF=0.500;MQ=12.09;MQ0=494;MQRankSum=8.807;QD=0.13;ReadPosRankSum=-0.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:652,43:696:99:123,0,1730 chrIV 1308441 . C T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520;DP=699;Dels=0.00;FS=64.769;HaplotypeScore=10.8438;MLEAC=1;MLEAF=0.500;MQ=12.03;MQ0=496;MQRankSum=8.307;QD=0.02;ReadPosRankSum=-2.889;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:651,43:699:41:41,0,1710 chrIV 1308444 . A T 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;DP=688;Dels=0.00;FS=62.311;HaplotypeScore=7.9943;MLEAC=1;MLEAF=0.500;MQ=11.98;MQ0=488;MQRankSum=8.116;QD=0.11;ReadPosRankSum=-3.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:645,41:688:99:107,0,1703 chrIV 1308445 . A G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.672;DP=685;Dels=0.00;FS=58.938;HaplotypeScore=7.9943;MLEAC=1;MLEAF=0.500;MQ=12.00;MQ0=485;MQRankSum=7.806;QD=0.03;ReadPosRankSum=-3.169;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:646,38:685:52:52,0,1680 chrIV 1308447 . G C 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DP=680;Dels=0.00;FS=62.323;HaplotypeScore=9.0456;MLEAC=1;MLEAF=0.500;MQ=12.01;MQ0=481;MQRankSum=8.594;QD=0.10;ReadPosRankSum=-3.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:636,39:680:96:96,0,1651 chrIV 1308451 . A G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.385;DP=675;Dels=0.00;FS=59.486;HaplotypeScore=8.3893;MLEAC=1;MLEAF=0.500;MQ=12.03;MQ0=476;MQRankSum=7.560;QD=0.02;ReadPosRankSum=-3.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:634,38:675:40:40,0,1647 chrIV 1308471 . C T 937.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.025;DP=612;Dels=0.00;FS=134.736;HaplotypeScore=101.4492;MLEAC=1;MLEAF=0.500;MQ=11.04;MQ0=449;MQRankSum=3.796;QD=1.53;ReadPosRankSum=4.078;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:559,53:612:99:967,0,386 chrIV 1308480 . A G 471.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;DP=633;Dels=0.00;FS=118.384;HaplotypeScore=77.1132;MLEAC=1;MLEAF=0.500;MQ=10.96;MQ0=471;MQRankSum=4.033;QD=0.74;ReadPosRankSum=-4.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:532,100:633:99:501,0,1170 chrIV 1309620 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2832,283,0 chrIV 1310395 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3354,343,0 chrIV 1311474 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=179;Dels=0.00;FS=8.091;HaplotypeScore=18.1826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.624;QD=22.21;ReadPosRankSum=3.381;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3975,412,0 chrIV 1312365 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.3359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:4152,427,0 chrIV 1316641 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.090;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.060;QD=24.42;ReadPosRankSum=1.165;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2866,268,0 chrIV 1316659 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.169;QD=23.56;ReadPosRankSum=1.701;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2695,273,0 chrIV 1317903 . G C 5663.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.00;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5663,592,0 chrIV 1318030 . A C 5610.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.5417;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.09;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5610,574,0 chrIV 1318086 . G T 5288.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.18;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5288,520,0 chrIV 1318331 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.76;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4636,466,0 chrIV 1318378 . G A 5583.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.9731;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.85;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5583,559,0 chrIV 1318845 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.48;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4579,466,0 chrIV 1318973 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.54;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4036,400,0 chrIV 1320900 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2225,216,0 chrIV 1321633 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=24.44;ReadPosRankSum=1.709;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3642,376,0 chrIV 1323775 . C T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0327;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.66;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4711,469,0 chrIV 1325586 . A G 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=4.629;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.173;QD=23.88;ReadPosRankSum=1.713;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4322,448,0 chrIV 1327780 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3408,349,0 chrIV 1331502 . G A 6062.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=20.4787;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.47;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6062,604,0 chrIV 1332967 . A G 2869 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.85;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2902,295,0 chrIV 1333251 . T G 5369.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5369,544,0 chrIV 1333470 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.3800;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.31;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5008,493,0 chrIV 1333527 . A G 5422.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2157;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.70;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5422,550,0 chrIV 1334877 . C T 6090.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.91;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6090,598,0 chrIV 1335398 . C A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5239,541,0 chrIV 1335638 . T A 7791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=299;Dels=0.00;FS=2.798;HaplotypeScore=24.4451;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.554;QD=26.06;ReadPosRankSum=2.417;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:2,297:299:99:7791,781,0 chrIV 1335901 . C T 5241.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.8126;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.99;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5241,520,0 chrIV 1337684 . C G 6166.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.8163;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.96;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6166,646,0 chrIV 1337715 . T C 6042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=250;Dels=0.00;FS=5.227;HaplotypeScore=15.6602;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.287;QD=24.17;ReadPosRankSum=3.383;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:4,244:250:99:6042,616,0 chrIV 1337851 . A G 7179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=286;Dels=0.00;FS=3.020;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.468;QD=25.10;ReadPosRankSum=2.398;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:2,284:286:99:7179,745,0 chrIV 1338262 . G T 3017 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.68;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3050,295,0 chrIV 1338321 . T G 3676.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3676,382,0 chrIV 1338585 . A T 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.150;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.386;QD=24.62;ReadPosRankSum=1.696;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4677,484,0 chrIV 1339967 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=192;Dels=0.00;FS=4.393;HaplotypeScore=18.5057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.658;QD=24.15;ReadPosRankSum=1.695;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,187:192:99:4636,487,0 chrIV 1340783 . T C 56.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.929;DP=101;Dels=0.00;FS=3.230;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=1;MQRankSum=0.858;QD=0.56;ReadPosRankSum=-4.364;SB=-5.451e+01 GT:AD:DP:GQ:PL 1/1:93,8:101:12:89,12,0 chrIV 1341095 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2695,259,0 chrIV 1341293 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.240;QD=24.29;ReadPosRankSum=1.705;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3191,330,0 chrIV 1341693 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.73;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1927,204,0 chrIV 1341826 . G C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.43;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3494,361,0 chrIV 1342134 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3559,358,0 chrIV 1342306 . G T 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DP=189;Dels=0.00;FS=4.168;HaplotypeScore=14.1372;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.714;QD=24.16;ReadPosRankSum=0.719;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4567,451,0 chrIV 1342433 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4814,475,0 chrIV 1342986 . G A 4981.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4981,499,0 chrIV 1343249 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3002,298,0 chrIV 1344556 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.72;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,313,0 chrIV 1344681 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.24;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4048,409,0 chrIV 1344727 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=6.217;HaplotypeScore=10.8979;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.211;QD=23.71;ReadPosRankSum=2.356;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3746,385,0 chrIV 1345064 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2718,279,0 chrIV 1345632 . T A 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.418;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.084;QD=25.04;ReadPosRankSum=1.708;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3631,355,0 chrIV 1345654 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.96;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3152,310,0 chrIV 1345664 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.17;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2997,309,0 chrIV 1345972 . A G 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.323;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.416;QD=25.34;ReadPosRankSum=1.672;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5878,607,0 chrIV 1346089 . A C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.240;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.8687;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.121;QD=24.82;ReadPosRankSum=-0.611;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:5064,520,0 chrIV 1346336 . G C 2752 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.56;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2785,285,0 chrIV 1346770 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.46;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4402,433,0 chrIV 1347437 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3181,336,0 chrIV 1348356 . T G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=132;Dels=0.00;FS=5.848;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.716;QD=25.05;ReadPosRankSum=2.916;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:3306,337,0 chrIV 1349687 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=5.692;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=25.77;ReadPosRankSum=2.919;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3531,364,0 chrIV 1352461 . A C 2212 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=2;QD=24.31;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2245,228,0 chrIV 1352644 . T A 945 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.3141;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=7;QD=20.11;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:7,40:47:99:978,102,0 chrIV 1352969 . C T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=18;Dels=0.00;FS=3.680;HaplotypeScore=8.9794;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=11;MQRankSum=0.198;QD=1.00;ReadPosRankSum=-1.495;SB=-6.411e-03 GT:AD:DP:GQ:PL 0/1:14,2:18:48:48,0,66 chrIV 1352971 . C A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=14;Dels=0.00;FS=3.680;HaplotypeScore=6.9805;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=7;MQRankSum=1.495;QD=1.43;ReadPosRankSum=-1.495;SB=-6.411e-03 GT:AD:DP:GQ:PL 0/1:12,2:14:50:50,0,70 chrIV 1352973 . A T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=15;Dels=0.00;FS=7.068;HaplotypeScore=6.9805;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=7;MQRankSum=1.517;QD=2.67;ReadPosRankSum=-1.920;SB=-6.306e-03 GT:AD:DP:GQ:PL 0/1:12,3:15:58:70,0,58 chrIV 1353387 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.7176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.70;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4432,454,0 chrIV 1353994 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.005;QD=25.52;ReadPosRankSum=1.697;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2611,267,0 chrIV 1354278 . G C 2800 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.53;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,114:119:99:2833,291,0 chrIV 1354322 . T A 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.396;QD=25.73;ReadPosRankSum=1.705;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3293,342,0 chrIV 1357207 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.7849;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-2.146;QD=23.42;ReadPosRankSum=2.423;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4380,445,0 chrIV 1357411 . T C 1180 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1213,120,0 chrIV 1357511 . G C 81.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;DP=22;Dels=0.00;FS=11.461;HaplotypeScore=5.3026;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=1.488;QD=3.71;ReadPosRankSum=-0.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,13:22:12:114,12,0 chrIV 1358693 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.05;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3465,340,0 chrIV 1358780 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3031,307,0 chrIV 1359608 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.9615;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.74;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3809,388,0 chrIV 1361031 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.43;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1328,138,0 chrIV 1361345 . T G 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.224;DP=168;Dels=0.00;FS=263.835;HaplotypeScore=12.4861;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.170;QD=1.57;ReadPosRankSum=-3.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,56:168:99:293,0,2117 chrIV 1362063 . T A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.36;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5034,496,0 chrIV 1364176 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.3181;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.39;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3780,408,0 chrIV 1364465 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.55;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3638,355,0 chrIV 1364702 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.86;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2944,289,0 chrIV 1364750 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.148;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.460;QD=25.55;ReadPosRankSum=1.624;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3271,331,0 chrIV 1365330 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2741;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.40;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3960,391,0 chrIV 1366750 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.54;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3100,304,0 chrIV 1367576 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.9171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.214;QD=24.74;ReadPosRankSum=1.714;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4824,496,0 chrIV 1368022 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.34;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3828,376,0 chrIV 1368624 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.018;QD=24.59;ReadPosRankSum=1.669;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4082,424,0 chrIV 1371004 . T C 3137 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.73;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3170,325,0 chrIV 1371121 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.77;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2733,271,0 chrIV 1371136 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.81;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2759,277,0 chrIV 1371862 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.3973;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.70;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3729,373,0 chrIV 1371972 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=146;Dels=0.00;FS=6.036;HaplotypeScore=9.0098;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.660;QD=25.71;ReadPosRankSum=2.938;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3754,382,0 chrIV 1372366 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3385,331,0 chrIV 1372422 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2587,255,0 chrIV 1372812 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2648,262,0 chrIV 1373275 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3839,382,0 chrIV 1373320 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3220,325,0 chrIV 1373769 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.98;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2831,283,0 chrIV 1374217 . G T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3820,379,0 chrIV 1374352 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=186;Dels=0.00;FS=2.563;HaplotypeScore=9.5627;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=2.054;QD=25.94;ReadPosRankSum=2.952;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4824,499,0 chrIV 1374505 . T G 4634.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.75;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4634,466,0 chrIV 1374590 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.467;QD=19.44;ReadPosRankSum=1.654;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3518,369,0 chrIV 1374919 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.70;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3338,337,0 chrIV 1375261 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.51;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3923,403,0 chrIV 1376623 . T C 5815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=223;Dels=0.00;FS=2.564;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-2.091;QD=26.08;ReadPosRankSum=2.968;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:5815,595,0 chrIV 1379791 . A C 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=5.211;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.273;QD=24.75;ReadPosRankSum=0.355;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2087,213,0 chrIV 1379888 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.40;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1802,180,0 chrIV 1380625 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=4.493;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.530;QD=25.23;ReadPosRankSum=1.703;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:3136,321,0 chrIV 1381795 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.575;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.379;QD=25.53;ReadPosRankSum=2.419;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:4085,418,0 chrIV 1385256 . C A 1656 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.32;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1689,165,0 chrIV 1385323 . C T 1841 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1874,180,0 chrIV 1385712 . G C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.39;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4219,430,0 chrIV 1386851 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.931;QD=24.36;ReadPosRankSum=1.692;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4239,439,0 chrIV 1386920 . G A 5661.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.48;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5661,553,0 chrIV 1387160 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4712,493,0 chrIV 1389010 . T A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4259,415,0 chrIV 1390794 . T A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.00;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3822,385,0 chrIV 1391355 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.700;QD=23.88;ReadPosRankSum=1.708;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3438,346,0 chrIV 1391478 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=26.16;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4055,397,0 chrIV 1391636 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.4972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.679;QD=20.90;ReadPosRankSum=1.714;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4117,421,0 chrIV 1392181 . C A 1864 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.75;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1897,204,0 chrIV 1392182 . A C 1861 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.610;QD=17.72;ReadPosRankSum=1.666;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1894,204,0 chrIV 1392187 . G C 1957 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.12;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1990,204,0 chrIV 1392190 . G A 2006 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.57;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2039,213,0 chrIV 1394008 . G A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.70;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4835,484,0 chrIV 1394087 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.61;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4432,433,0 chrIV 1394476 . C A 4929.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.89;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4929,487,0 chrIV 1394566 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=4.281;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.396;QD=24.56;ReadPosRankSum=1.655;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3340,340,0 chrIV 1394881 . A C 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=224;Dels=0.00;FS=10.261;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.248;QD=23.79;ReadPosRankSum=2.915;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:5329,550,0 chrIV 1394902 . A T 5011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=211;Dels=0.00;FS=2.115;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.643;QD=23.75;ReadPosRankSum=2.633;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:5011,490,0 chrIV 1398006 . G A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3870,388,0 chrIV 1398909 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.93;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2899,292,0 chrIV 1400042 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3271,328,0 chrIV 1400971 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2234;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.83;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3332,340,0 chrIV 1401418 . A C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1962;MLEAC=2;MLEAF=1.00;MQ=61.60;MQ0=0;MQRankSum=-0.696;QD=24.67;ReadPosRankSum=0.832;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3215,331,0 chrIV 1401563 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3074,313,0 chrIV 1401685 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.010;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.680;QD=22.99;ReadPosRankSum=1.706;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3113,318,0 chrIV 1401828 . C A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.4453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3675,381,0 chrIV 1402305 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.0409;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.15;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4105,418,0 chrIV 1402695 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0640;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.54;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2039,204,0 chrIV 1402760 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.98;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1607,165,0 chrIV 1403147 . T G 2575 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2608,267,0 chrIV 1403491 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3801,385,0 chrIV 1403689 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.391;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.106;QD=24.64;ReadPosRankSum=1.687;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3844,388,0 chrIV 1403771 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.22;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3606,367,0 chrIV 1403792 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2111;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.50;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3065,301,0 chrIV 1404745 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7681;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.29;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3497,346,0 chrIV 1405366 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.739;QD=21.22;ReadPosRankSum=1.671;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3692,382,0 chrIV 1406350 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=136;Dels=0.00;FS=3.027;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.256;QD=26.54;ReadPosRankSum=2.377;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3610,373,0 chrIV 1406418 . A C 3087 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.90;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3120,321,0 chrIV 1406566 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.48;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2611,270,0 chrIV 1406578 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.595;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.306;QD=22.54;ReadPosRankSum=1.703;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2715,276,0 chrIV 1406925 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.75;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4034,406,0 chrIV 1407020 . A T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5086;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.63;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4178,412,0 chrIV 1407176 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.10;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4173,412,0 chrIV 1407493 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3227,331,0 chrIV 1407535 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=3.112;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.168;QD=23.71;ReadPosRankSum=1.625;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3139,319,0 chrIV 1407845 . C T 5453.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.36;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5453,550,0 chrIV 1407899 . C T 6844.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.16;SB=-3.847e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6844,676,0 chrIV 1408247 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.3322;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3597,375,0 chrIV 1408429 . G A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6326;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.60;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4158,409,0 chrIV 1408452 . C G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.74;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4403,451,0 chrIV 1408589 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6511;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.55;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3823,382,0 chrIV 1408596 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.6588;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.18;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3664,361,0 chrIV 1409126 . A T 5529.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.0287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-3.259e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5529,547,0 chrIV 1409468 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.346;QD=23.43;ReadPosRankSum=1.684;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3467,355,0 chrIV 1409487 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.522;QD=23.14;ReadPosRankSum=1.637;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3425,354,0 chrIV 1409794 . A G 5428.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.4263;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.25;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5428,547,0 chrIV 1409847 . C T 6486.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.64;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6486,637,0 chrIV 1410118 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.71;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2964,292,0 chrIV 1410128 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=137;Dels=0.00;FS=10.381;HaplotypeScore=104.8808;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.366;QD=20.86;ReadPosRankSum=2.337;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,130:137:99:2891,303,0 chrIV 1410837 . C T 9236.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=30.7271;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.50;SB=-4.562e+03 GT:AD:DP:GQ:PL 1/1:0,372:377:99:9236,920,0 chrIV 1411151 . C T 7331.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=20.8038;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.42;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:7331,721,0 chrIV 1411239 . G A 5361.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.0180;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.48;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5361,535,0 chrIV 1411263 . A G 5198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=222;Dels=0.00;FS=12.564;HaplotypeScore=15.7447;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.953;QD=23.41;ReadPosRankSum=3.389;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:4,217:222:99:5198,544,0 chrIV 1411311 . C G 46.97 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=175.9373;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=0.26;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:9:79,9,0 chrIV 1411324 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.96;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4025,397,0 chrIV 1411563 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.4053;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.17;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:3022,298,0 chrIV 1411566 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=125;Dels=0.00;FS=4.296;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.072;QD=22.18;ReadPosRankSum=1.703;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,120:125:99:2805,291,0 chrIV 1411608 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=4.157;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.928;QD=22.68;ReadPosRankSum=1.677;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2891,294,0 chrIV 1411676 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=13.22;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1699,165,0 chrIV 1411690 . A T 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=5.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-1.678;QD=10.70;ReadPosRankSum=1.705;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1402,141,0 chrIV 1411698 . T C 1458 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;MQRankSum=-0.265;QD=10.12;ReadPosRankSum=2.415;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:1491,150,0 chrIV 1411705 . C T 1193 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=8.23;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1226,155,0 chrIV 1411706 . A C 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=8.19;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1220,155,0 chrIV 1411721 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=8.92;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1549,156,0 chrIV 1411737 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5755;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=11.21;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2017,204,0 chrIV 1412047 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.17;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4304,451,0 chrIV 1412444 . C T 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3654;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.418;QD=13.99;ReadPosRankSum=1.469;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2062,213,0 chrIV 1412726 . G T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=26.99;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3995,391,0 chrIV 1412849 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.60;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4113,403,0 chrIV 1412922 . C T 4698.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=26.85;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4698,454,0 chrIV 1412942 . T C 4356.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.75;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4356,457,0 chrIV 1413176 . T G 4290.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.82;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4290,451,0 chrIV 1413182 . C G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.51;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,181:187:99:4209,433,0 chrIV 1413299 . C T 6218.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.6825;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.27;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6218,607,0 chrIV 1413377 . T C 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.299;QD=25.38;ReadPosRankSum=1.687;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3934,409,0 chrIV 1413485 . A G 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=241;Dels=0.00;FS=6.067;HaplotypeScore=15.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.707;QD=23.49;ReadPosRankSum=2.912;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5661,577,0 chrIV 1413914 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8681;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.74;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3774,376,0 chrIV 1414327 . A T 2813 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.89;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2846,286,0 chrIV 1414748 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=27.00;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2409,240,0 chrIV 1414935 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.15;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3922,403,0 chrIV 1415193 . A T 4690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=5.883;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.192;QD=25.22;ReadPosRankSum=1.639;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4690,466,0 chrIV 1415688 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.478;HaplotypeScore=11.7461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=24.08;ReadPosRankSum=1.684;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3515,358,0 chrIV 1416353 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.1780;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.99;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3199,328,0 chrIV 1416401 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.22;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3255,333,0 chrIV 1416431 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4080;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.21;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3302,325,0 chrIV 1416716 . T C 5084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=222;Dels=0.00;FS=6.793;HaplotypeScore=16.2907;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.862;QD=22.90;ReadPosRankSum=2.292;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:2,216:222:99:5084,523,0 chrIV 1416753 . T G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.2392;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4366,457,0 chrIV 1416927 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.09;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3372,354,0 chrIV 1416976 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.57;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3733,385,0 chrIV 1417161 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5336;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.36;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4020,412,0 chrIV 1417489 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.36;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3203,316,0 chrIV 1417509 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.382;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.483;QD=23.89;ReadPosRankSum=1.704;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2947,312,0 chrIV 1417646 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.21;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3433,340,0 chrIV 1417872 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4588,481,0 chrIV 1418662 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.939;QD=26.38;ReadPosRankSum=2.914;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:2196,222,0 chrIV 1421222 . C A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3287,345,0 chrIV 1423141 . A T 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.557;QD=26.01;ReadPosRankSum=1.642;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3024,298,0 chrIV 1425361 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.360;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.312;QD=25.98;ReadPosRankSum=1.711;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4234,427,0 chrIV 1428992 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4459,436,0 chrIV 1429122 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.84;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3924,406,0 chrIV 1429245 . A G 6651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=259;Dels=0.00;FS=4.942;HaplotypeScore=11.4969;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.638;QD=25.68;ReadPosRankSum=1.692;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:6651,697,0 chrIV 1429971 . C G 7358.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=25.2315;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.07;SB=-3.878e+03 GT:AD:DP:GQ:PL 1/1:0,315:319:99:7358,772,0 chrIV 1430469 . A G 6007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=275;Dels=0.00;FS=5.854;HaplotypeScore=19.7627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.744;QD=21.84;ReadPosRankSum=2.959;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:3,269:275:99:6007,631,0 chrIV 1431080 . G C 4472.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.71;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4472,463,0 chrIV 1433710 . A T 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.535;QD=25.56;ReadPosRankSum=1.693;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4498,445,0 chrIV 1434754 . C G 3931.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3931,403,0 chrIV 1441482 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.67;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:2020,201,0 chrIV 1441483 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.04;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1918,201,0 chrIV 1441760 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=167;Dels=0.00;FS=13.181;HaplotypeScore=15.5097;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.089;QD=24.34;ReadPosRankSum=3.334;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:4065,421,0 chrIV 1441950 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7474;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.82;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3012,301,0 chrIV 1442375 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=146;Dels=0.00;FS=3.027;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.564;QD=22.99;ReadPosRankSum=2.399;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3356,348,0 chrIV 1442387 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.79;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3155,310,0 chrIV 1442606 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.053;QD=25.65;ReadPosRankSum=1.705;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3334,340,0 chrIV 1442669 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=4.260;HaplotypeScore=14.4132;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.707;QD=23.96;ReadPosRankSum=1.707;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3307,348,0 chrIV 1442725 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.096;QD=24.90;ReadPosRankSum=1.638;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3710,376,0 chrIV 1442774 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.68;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4315,445,0 chrIV 1442806 . G A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.72;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4783,466,0 chrIV 1442843 . T C 4524.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.86;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4524,460,0 chrIV 1443122 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.01;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3530,361,0 chrIV 1443134 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.200;QD=21.17;ReadPosRankSum=1.688;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3323,345,0 chrIV 1443138 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.076;QD=21.23;ReadPosRankSum=1.689;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3375,349,0 chrIV 1443154 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.45;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3106,324,0 chrIV 1443218 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.65;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3996,412,0 chrIV 1443293 . T A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=25.73;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3936,391,0 chrIV 1443444 . T G 1956 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3600;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.85;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1989,204,0 chrIV 1443509 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=18.85;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1013,105,0 chrIV 1443515 . A T 947 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.94;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:980,99,0 chrIV 1443535 . G A 656 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.7454;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=14.91;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:689,69,0 chrIV 1443536 . G A 656 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.7454;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=14.91;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:689,69,0 chrIV 1443800 . T C 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.102;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.913;QD=22.82;ReadPosRankSum=2.363;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1973,207,0 chrIV 1443836 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.11;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3616,373,0 chrIV 1443906 . C A 4831.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.40;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4831,478,0 chrIV 1443911 . C T 4879.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.80;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4879,487,0 chrIV 1444256 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.47;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4454,463,0 chrIV 1444337 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2738;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.78;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3085,318,0 chrIV 1444364 . A G 2545 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.1632;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.86;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2578,264,0 chrIV 1444544 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.49;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4556,463,0 chrIV 1444709 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=249;Dels=0.00;FS=3.019;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.422;QD=22.06;ReadPosRankSum=2.420;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5492,571,0 chrIV 1444711 . G A 6096.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=24.09;SB=-3.816e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6096,589,0 chrIV 1444817 . A G 6558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=291;Dels=0.00;FS=5.656;HaplotypeScore=25.2213;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.230;QD=22.54;ReadPosRankSum=2.927;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:3,285:291:99:6558,676,0 chrIV 1444847 . A G 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=252;Dels=0.00;FS=3.010;HaplotypeScore=16.6250;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.142;QD=20.90;ReadPosRankSum=2.351;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:2,248:252:99:5267,561,0 chrIV 1444985 . A T 6445.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.37;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6445,625,0 chrIV 1445015 . G A 6217.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.91;SB=-3.516e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6217,640,0 chrIV 1445114 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.42;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5425,562,0 chrIV 1445129 . C T 5927.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.97;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5927,595,0 chrIV 1445249 . C T 8158.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=25.26;SB=-3.849e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:8158,820,0 chrIV 1445459 . T A 5784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=257;Dels=0.00;FS=4.857;HaplotypeScore=4.2712;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.384;QD=22.51;ReadPosRankSum=1.705;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5784,571,0 chrIV 1445462 . T G 5531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=257;Dels=0.00;FS=4.503;HaplotypeScore=5.0051;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.283;QD=21.52;ReadPosRankSum=1.718;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,252:257:99:5531,571,0 chrIV 1445609 . T C 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.584;QD=23.31;ReadPosRankSum=0.858;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4918,499,0 chrIV 1445641 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.765;DP=182;Dels=0.00;FS=21.042;HaplotypeScore=15.4124;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.141;QD=21.14;ReadPosRankSum=2.159;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:8,174:182:99:3847,370,0 chrIV 1445712 . C T 4947.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.04;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4947,517,0 chrIV 1445739 . T C 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=199;Dels=0.00;FS=3.815;HaplotypeScore=14.6600;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.093;QD=23.42;ReadPosRankSum=1.714;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:4661,481,0 chrIV 1446020 . T C 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=186;Dels=0.00;FS=10.217;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.092;QD=23.97;ReadPosRankSum=2.853;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4458,466,0 chrIV 1446136 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.7332;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.69;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4573,463,0 chrIV 1446425 . G A 3822.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=22.75;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3822,394,0 chrIV 1446428 . C T 4018.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=23.78;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4018,394,0 chrIV 1446434 . G A 3699.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=22.69;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3699,364,0 chrIV 1446482 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.26;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2946,295,0 chrIV 1446578 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=174;Dels=0.00;FS=3.021;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.036;QD=25.39;ReadPosRankSum=2.392;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4418,445,0 chrIV 1446792 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.05;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3015,298,0 chrIV 1446878 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.866;QD=22.52;ReadPosRankSum=1.680;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3005,309,0 chrIV 1446950 . T C 2322 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.11;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2355,246,0 chrIV 1447014 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=28.69;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4131,397,0 chrIV 1447053 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.54;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2858,291,0 chrIV 1447054 . T C 2779 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=4.8607;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.55;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2812,286,0 chrIV 1447111 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=98;Dels=0.00;FS=5.521;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.011;QD=20.45;ReadPosRankSum=2.908;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2037,213,0 chrIV 1447149 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.86;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3266,334,0 chrIV 1447231 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.09;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2838,280,0 chrIV 1447282 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0215;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.39;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2929,289,0 chrIV 1447296 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=7.510;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.678;QD=19.14;ReadPosRankSum=2.396;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2675,303,0 chrIV 1447297 . T A 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.076;QD=19.23;ReadPosRankSum=1.681;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2668,300,0 chrIV 1447313 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.06;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3489,343,0 chrIV 1447378 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=27.65;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2770,268,0 chrIV 1447428 . G C 2603 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.33;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2636,267,0 chrIV 1447474 . C G 2395 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.38;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2428,249,0 chrIV 1447558 . C A 2262 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8416;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.81;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2295,231,0 chrIV 1447682 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1422,156,0 chrIV 1447808 . C A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.52;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3527,366,0 chrIV 1447837 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.18;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3313,331,0 chrIV 1447962 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.81;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3872,400,0 chrIV 1447991 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.97;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4195,427,0 chrIV 1448237 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.29;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3118,310,0 chrIV 1448315 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3906,379,0 chrIV 1448483 . T A 3151 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=26.93;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3184,322,0 chrIV 1448600 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=4.669;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.660;QD=25.87;ReadPosRankSum=1.677;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3285,339,0 chrIV 1448696 . A T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=26.12;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3396,346,0 chrIV 1448726 . C G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=22.57;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3273,336,0 chrIV 1448735 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.96;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3294,337,0 chrIV 1448745 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=3.003;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.806;QD=20.90;ReadPosRankSum=2.402;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3251,331,0 chrIV 1448987 . T A 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.702;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.389;QD=26.59;ReadPosRankSum=1.652;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3430,337,0 chrIV 1449089 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7081;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.630;QD=23.81;ReadPosRankSum=1.698;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2462,258,0 chrIV 1449123 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.23;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2606,261,0 chrIV 1449406 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2495,249,0 chrIV 1449611 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.68;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3093,324,0 chrIV 1450091 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1284,126,0 chrIV 1450513 . T A 2708 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=25.31;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2741,273,0 chrIV 1450588 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2142,225,0 chrIV 1450638 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4328;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=25.02;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3061,304,0 chrIV 1450681 . T A 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=115;Dels=0.00;FS=6.055;HaplotypeScore=106.1446;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.009;QD=24.46;ReadPosRankSum=2.922;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2846,280,0 chrIV 1450720 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.02;FS=0.000;HaplotypeScore=25.4871;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.58;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2639,262,0 chrIV 1450764 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=117;Dels=0.00;FS=11.229;HaplotypeScore=11.9741;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.543;QD=25.15;ReadPosRankSum=2.923;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2975,303,0 chrIV 1450894 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=23.93;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2953,303,0 chrIV 1450897 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.06;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2939,309,0 chrIV 1450914 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=20.90;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2687,285,0 chrIV 1450998 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=16.72;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1922,189,0 chrIV 1451009 . A T 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=-0.778;QD=16.65;ReadPosRankSum=1.661;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1665,168,0 chrIV 1451028 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=65.9598;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=13.71;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1349,141,0 chrIV 1451042 . C G 344 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9884;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=3.87;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:39:377,39,0 chrIV 1451054 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=14.86;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1266,126,0 chrIV 1451129 . A T 106.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=67.7815;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.043;QD=1.33;ReadPosRankSum=1.689;SB=-9.843e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:15:139,15,0 chrIV 1451166 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=87;Dels=0.00;FS=5.996;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=1.483;QD=18.98;ReadPosRankSum=2.918;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1684,171,0 chrIV 1451277 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8860;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.91;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1666,171,0 chrIV 1451427 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.18;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3206,319,0 chrIV 1451517 . C T 5652.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.23;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5652,562,0 chrIV 1451576 . C G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.30;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3451,352,0 chrIV 1451577 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.54;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3575,355,0 chrIV 1451724 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.74;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4787,481,0 chrIV 1451955 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.60;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4017,412,0 chrIV 1452195 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=121;Dels=0.00;FS=9.134;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.080;QD=22.41;ReadPosRankSum=3.311;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:4,116:121:99:2745,288,0 chrIV 1452222 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.00;FS=3.004;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.353;QD=23.77;ReadPosRankSum=2.409;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2980,303,0 chrIV 1452255 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.06;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3100,313,0 chrIV 1452420 . G C 3129 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.89;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3162,324,0 chrIV 1452434 . A T 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.514;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.403;QD=24.89;ReadPosRankSum=1.707;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3410,325,0 chrIV 1452539 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9773;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.60;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3405,346,0 chrIV 1452589 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=25.15;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3923,412,0 chrIV 1452642 . G C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.82;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4715,481,0 chrIV 1452762 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.3387;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.665;QD=22.37;ReadPosRankSum=0.324;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3468,349,0 chrIV 1452807 . C A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.10;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3630,358,0 chrIV 1452825 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.92;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3080,313,0 chrIV 1452837 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.83;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2987,309,0 chrIV 1452974 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=27.03;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3033,295,0 chrIV 1453164 . C G 59.97 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=1.50;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:9:92,9,0 chrIV 1453212 . T G 1527 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.79;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1560,159,0 chrIV 1453300 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1287,132,0 chrIV 1454822 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3895,394,0 chrIV 1454951 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=3.216;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.160;QD=25.36;ReadPosRankSum=1.705;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3347,345,0 chrIV 1455133 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=8.681;HaplotypeScore=10.5050;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.334;QD=25.58;ReadPosRankSum=2.322;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4426,448,0 chrIV 1455507 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=180;Dels=0.00;FS=7.198;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.428;QD=25.79;ReadPosRankSum=2.381;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4642,469,0 chrIV 1455570 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.375;DP=185;Dels=0.00;FS=9.992;HaplotypeScore=21.3865;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.402;QD=25.24;ReadPosRankSum=4.478;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:7,175:185:99:4670,475,0 chrIV 1455713 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.49;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4369,436,0 chrIV 1455714 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=24.35;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4504,433,0 chrIV 1455920 . C G 3864.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.61;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3864,403,0 chrIV 1455937 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.37;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3094,324,0 chrIV 1456074 . T G 2618 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.24;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2651,270,0 chrIV 1456144 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.743;QD=24.08;ReadPosRankSum=2.387;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1911,192,0 chrIV 1456284 . G C 1493 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1526,159,0 chrIV 1456713 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.22;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1898,192,0 chrIV 1456746 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.16;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2183,222,0 chrIV 1456794 . C G 2270 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.65;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2303,240,0 chrIV 1456812 . C A 2214 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.16;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2247,219,0 chrIV 1457142 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.196;QD=26.09;ReadPosRankSum=1.696;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2564,267,0 chrIV 1457184 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.84;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2418,246,0 chrIV 1457335 . T C 2191 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.56;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2224,228,0 chrIV 1457379 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.16;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2571,255,0 chrIV 1457633 . C A 2921 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.08;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2954,292,0 chrIV 1457664 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.73;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3249,328,0 chrIV 1457763 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2091,213,0 chrIV 1457829 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.86;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3136,316,0 chrIV 1457981 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=27.09;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4199,406,0 chrIV 1458101 . C T 7832.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.8156;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=27.29;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:7832,790,0 chrIV 1458188 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=9.3119;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=9.33;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,323:326:99:3073,310,0 chrIV 1458243 . T C 6914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=325;Dels=0.00;FS=17.925;HaplotypeScore=19.3063;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.536;QD=21.27;ReadPosRankSum=3.429;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:4,316:325:99:6914,727,0 chrIV 1458332 . C T 5657.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=22.63;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5657,586,0 chrIV 1458347 . C T 5767.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=24.03;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5767,580,0 chrIV 1458387 . G A 5344.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.4487;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=23.65;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5344,550,0 chrIV 1458423 . T C 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=3.052;HaplotypeScore=10.1065;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.297;QD=23.63;ReadPosRankSum=1.716;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4985,511,0 chrIV 1458432 . T C 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=211;Dels=0.00;FS=3.009;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.437;QD=22.36;ReadPosRankSum=2.403;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4718,487,0 chrIV 1458576 . G A 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.8201;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.017;QD=25.42;ReadPosRankSum=0.849;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:5212,523,0 chrIV 1458625 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=25.12;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4697,469,0 chrIV 1458636 . G T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.5640;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.67;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4285,433,0 chrIV 1458898 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2298;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=20.17;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2635,256,0 chrIV 1458903 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=18.89;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2489,249,0 chrIV 1458915 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=19.34;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2451,243,0 chrIV 1458931 . T C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.460;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-0.681;QD=17.00;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2107,213,0 chrIV 1458951 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=18.28;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2409,237,0 chrIV 1459011 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.54;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3525,352,0 chrIV 1459382 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.24;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2682,273,0 chrIV 1459584 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.30;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3389,334,0 chrIV 1459601 . C G 2873 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3219;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.54;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2906,292,0 chrIV 1459669 . C G 4510.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.4835;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.55;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4510,469,0 chrIV 1459800 . C T 5542.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.31;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5542,538,0 chrIV 1459840 . G A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.3806;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.59;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5066,499,0 chrIV 1460367 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.14;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4761,478,0 chrIV 1460373 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=209;Dels=0.00;FS=10.852;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-1.015;QD=21.50;ReadPosRankSum=2.908;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4493,469,0 chrIV 1460401 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=217;Dels=0.00;FS=6.206;HaplotypeScore=12.6608;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.006;QD=21.04;ReadPosRankSum=2.404;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:4565,460,0 chrIV 1460431 . T A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.54;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4050,403,0 chrIV 1460433 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.37;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4038,409,0 chrIV 1460475 . G C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.19;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3709,387,0 chrIV 1460534 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.805;QD=21.73;ReadPosRankSum=1.659;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3206,328,0 chrIV 1460585 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=24.28;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4031,418,0 chrIV 1460694 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=25.14;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3469,357,0 chrIV 1460721 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=134;Dels=0.01;FS=7.812;HaplotypeScore=8.4745;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=-0.941;QD=23.52;ReadPosRankSum=2.394;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3185,324,0 chrIV 1460763 . A T 2775 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=21.02;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2808,288,0 chrIV 1460774 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=19.56;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2497,249,0 chrIV 1460798 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=6.103;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.602;QD=18.95;ReadPosRankSum=2.946;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2496,258,0 chrIV 1460813 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.456;QD=19.87;ReadPosRankSum=1.706;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2676,268,0 chrIV 1460832 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=0.025;QD=18.31;ReadPosRankSum=1.707;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2523,255,0 chrIV 1460859 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=18.23;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2950,295,0 chrIV 1460877 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=17.62;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3029,312,0 chrIV 1460907 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=-1.568;QD=18.05;ReadPosRankSum=1.671;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3083,327,0 chrIV 1460919 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=16.47;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3112,327,0 chrIV 1460932 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=17.85;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3228,327,0 chrIV 1460968 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.29;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3591,375,0 chrIV 1461071 . C T 5403.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=26.88;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5403,520,0 chrIV 1461391 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.43;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3085,301,0 chrIV 1461432 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.18;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2930,292,0 chrIV 1461557 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=21.99;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2188,225,0 chrIV 1461567 . G C 2088 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.70;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2121,216,0 chrIV 1461591 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.88;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2024,201,0 chrIV 1461847 . T G 1151 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.920;DP=83;Dels=0.00;FS=187.423;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=0.227;QD=13.87;ReadPosRankSum=6.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,59:83:99:1184,123,0 chrIV 1461955 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=25.73;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1654,168,0 chrIV 1462035 . A C 1329 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=19.26;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1362,141,0 chrIV 1462057 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=17.00;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1172,120,0 chrIV 1462081 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=15.88;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1399,144,0 chrIV 1462089 . C A 1483 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=16.85;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1516,150,0 chrIV 1462110 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=16.55;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1688,174,0 chrIV 1462394 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.48;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3184,316,0 chrIV 1462526 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3073;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.18;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3069,321,0 chrIV 1462655 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0378;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.71;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3221,322,0 chrIV 1462703 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.52;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3197,328,0 chrIV 1462739 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.01;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3329,331,0 chrIV 1462835 . A C 3855.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.20;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3855,388,0 chrIV 1462865 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0279;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.342;QD=23.65;ReadPosRankSum=1.342;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3832,355,0 chrIV 1463461 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.78;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4306,430,0 chrIV 1463528 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.782;QD=21.96;ReadPosRankSum=1.676;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2756,282,0 chrIV 1463543 . C A 2698 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.84;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2731,282,0 chrIV 1463657 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.398;QD=24.01;ReadPosRankSum=1.704;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2962,306,0 chrIV 1463798 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.98;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2887,297,0 chrIV 1463897 . T G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.11;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3785,388,0 chrIV 1463912 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2947;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=24.39;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3780,388,0 chrIV 1464119 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=26.20;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3616,358,0 chrIV 1464206 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.21;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4513,442,0 chrIV 1464362 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.68;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3241,339,0 chrIV 1464424 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=7.867;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.240;QD=26.66;ReadPosRankSum=2.408;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:3205,322,0 chrIV 1464464 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.6974;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.66;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3010,301,0 chrIV 1464656 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.180;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.205;QD=21.33;ReadPosRankSum=2.396;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2976,306,0 chrIV 1464658 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.42;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3127,307,0 chrIV 1464680 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.32;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3018,307,0 chrIV 1465190 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8372;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.26;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3760,391,0 chrIV 1465247 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2940;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.54;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3179,333,0 chrIV 1465349 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=25.95;ReadPosRankSum=0.371;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3633,355,0 chrIV 1465397 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.91;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3471,343,0 chrIV 1465643 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=19.4375;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.29;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3789,376,0 chrIV 1465769 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.1536;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2803,288,0 chrIV 1465791 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.293;QD=17.95;ReadPosRankSum=2.412;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2384,240,0 chrIV 1465800 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.490;QD=17.25;ReadPosRankSum=1.705;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2258,237,0 chrIV 1465952 . G A 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.212;QD=23.57;ReadPosRankSum=1.591;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2366,231,0 chrIV 1466217 . T C 3006 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.84;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3039,318,0 chrIV 1466338 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.31;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1840,189,0 chrIV 1466344 . A T 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=81;Dels=0.00;FS=5.468;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.476;QD=21.33;ReadPosRankSum=1.689;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1761,166,0 chrIV 1466364 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.44;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1851,183,0 chrIV 1466633 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.12;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2688,273,0 chrIV 1466643 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.59;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2833,283,0 chrIV 1466759 . G T 4776.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=26.39;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4776,493,0 chrIV 1466914 . A G 8304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=323;Dels=0.00;FS=7.966;HaplotypeScore=20.5445;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.863;QD=25.71;ReadPosRankSum=2.434;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:2,320:323:99:8304,836,0 chrIV 1466994 . G A 9770.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=21.6453;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.78;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:0,379:379:99:9770,971,0 chrIV 1467056 . C T 9010.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.16;SB=-4.997e+03 GT:AD:DP:GQ:PL 1/1:0,371:373:99:9010,919,0 chrIV 1467059 . C T 9117.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.91;SB=-5.383e+03 GT:AD:DP:GQ:PL 1/1:0,364:366:99:9117,887,0 chrIV 1467118 . A G 7064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=13.6355;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.329;QD=22.71;ReadPosRankSum=1.598;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:1,310:311:99:7064,718,0 chrIV 1467260 . C T 6355.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=24.9762;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=25.22;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:6355,640,0 chrIV 1467392 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.10;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3977,400,0 chrIV 1467544 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.7672;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.78;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4189,459,0 chrIV 1467545 . T A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.9785;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.73;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4159,459,0 chrIV 1467713 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=2.930;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.178;QD=24.78;ReadPosRankSum=2.364;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4287,436,0 chrIV 1467761 . G T 4640.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9518;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=25.92;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4640,466,0 chrIV 1467803 . T C 4524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=7.787;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.973;QD=24.06;ReadPosRankSum=2.358;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4524,454,0 chrIV 1467833 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=182;Dels=0.00;FS=8.368;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.566;QD=20.29;ReadPosRankSum=2.395;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3693,379,0 chrIV 1467965 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.08;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3564,355,0 chrIV 1468015 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.347;QD=19.45;ReadPosRankSum=1.578;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2659,270,0 chrIV 1468017 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=137;Dels=0.00;FS=6.031;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.082;QD=18.92;ReadPosRankSum=2.948;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2625,264,0 chrIV 1468145 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.357;QD=23.92;ReadPosRankSum=1.703;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2927,300,0 chrIV 1468191 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.4717;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=24.09;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3117,310,0 chrIV 1468321 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.22;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2304,234,0 chrIV 1468372 . G C 1538 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.22;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1571,162,0 chrIV 1468381 . G C 1492 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.13;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1525,156,0 chrIV 1468406 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.34;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1664,159,0 chrIV 1468562 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=16.7170;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.19;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1749,174,0 chrIV 1468720 . C A 2740 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.46;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2773,277,0 chrIV 1468785 . G A 5469.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6988;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=27.35;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5469,538,0 chrIV 1468817 . C A 5053.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.59;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5053,538,0 chrIV 1468839 . C G 4856.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.49;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4856,505,0 chrIV 1468900 . C T 5213.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.91;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5213,505,0 chrIV 1468935 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.90;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4097,424,0 chrIV 1469141 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=2.775;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.978;QD=24.32;ReadPosRankSum=2.356;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3843,397,0 chrIV 1469161 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.01;FS=3.462;HaplotypeScore=6.0835;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.920;QD=23.25;ReadPosRankSum=1.711;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3836,388,0 chrIV 1469271 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=18.43;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2687,276,0 chrIV 1469289 . T A 2676 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.94;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2709,273,0 chrIV 1469311 . T A 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=171;Dels=0.00;FS=6.961;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.711;QD=16.12;ReadPosRankSum=2.292;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:2790,285,0 chrIV 1469501 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.08;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2816,280,0 chrIV 1469510 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.96;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2827,291,0 chrIV 1469751 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2625;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.56;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2266,225,0 chrIV 1469888 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2696,270,0 chrIV 1469963 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4359;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.517;QD=27.94;ReadPosRankSum=1.710;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4303,436,0 chrIV 1470079 . T G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.692;QD=25.44;ReadPosRankSum=1.692;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4478,454,0 chrIV 1470784 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3279,334,0 chrIV 1471220 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.14;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3343,337,0 chrIV 1471232 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.69;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3193,313,0 chrIV 1471256 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.52;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2735,282,0 chrIV 1471461 . T C 667 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:72:700,72,0 chrIV 1471524 . T C 1421 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1454,153,0 chrIV 1471657 . A G 2808 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=27.26;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2841,288,0 chrIV 1471830 . G A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.23;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4971,487,0 chrIV 1471854 . G C 5112.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.5072;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.23;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5112,517,0 chrIV 1471977 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.237;QD=23.80;ReadPosRankSum=1.713;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4355,439,0 chrIV 1471999 . G A 4633.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.6120;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.76;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4633,475,0 chrIV 1472290 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.46;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3896,403,0 chrIV 1472336 . C A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4854,475,0 chrIV 1472819 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.67;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4287,427,0 chrIV 1472829 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3824;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.53;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4094,409,0 chrIV 1473027 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.493;QD=25.28;ReadPosRankSum=1.709;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3842,394,0 chrIV 1473079 . C A 3031 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=27.81;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3064,304,0 chrIV 1473233 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2146,210,0 chrIV 1473269 . A G 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.669;QD=22.93;ReadPosRankSum=1.669;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1294,132,0 chrIV 1473316 . A G 1140 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:99:1173,120,0 chrIV 1473634 . G C 2670 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=24.05;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2703,270,0 chrIV 1473635 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=24.34;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2710,270,0 chrIV 1473825 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=128;Dels=0.00;FS=12.953;HaplotypeScore=5.7200;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.252;QD=24.08;ReadPosRankSum=2.945;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3115,327,0 chrIV 1473838 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.76;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3122,304,0 chrIV 1473860 . C A 2694 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.88;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2727,271,0 chrIV 1473918 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=125;Dels=0.00;FS=13.103;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-0.114;QD=20.32;ReadPosRankSum=2.943;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2573,264,0 chrIV 1473919 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.26;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2690,270,0 chrIV 1474139 . A C 2745 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=23.46;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2778,280,0 chrIV 1474141 . A C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=1.056;QD=21.61;ReadPosRankSum=2.368;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2648,279,0 chrIV 1474394 . T A 3037 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=25.96;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3070,318,0 chrIV 1474416 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=103;Dels=0.00;FS=6.149;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.681;QD=23.36;ReadPosRankSum=2.378;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2439,249,0 chrIV 1474473 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7618;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.90;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2102,210,0 chrIV 1474481 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.03;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2104,219,0 chrIV 1474567 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=25.16;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:2021,198,0 chrIV 1474570 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=25.73;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:2040,210,0 chrIV 1474679 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=25.49;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1384,132,0 chrIV 1474686 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=1.167;QD=24.88;ReadPosRankSum=1.662;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1252,129,0 chrIV 1474885 . A G 745 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:81:778,81,0 chrIV 1475249 . G A 5742.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=22.5387;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.43;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5742,577,0 chrIV 1475397 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.95;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4815,472,0 chrIV 1475652 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.494;QD=25.11;ReadPosRankSum=1.681;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:5148,523,0 chrIV 1476051 . C T 4957.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.09;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4957,490,0 chrIV 1476401 . G C 6846.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.82;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,298:300:99:6846,694,0 chrIV 1476502 . T C 4922.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.13;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4922,508,0 chrIV 1476572 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=196;Dels=0.00;FS=2.944;HaplotypeScore=11.1603;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.547;QD=23.65;ReadPosRankSum=2.362;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4636,481,0 chrIV 1479403 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.4313;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.06;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4354,445,0 chrIV 1479537 . C T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.18;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4660,460,0 chrIV 1480211 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3714,376,0 chrIV 1480271 . C A 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.100;QD=26.48;ReadPosRankSum=-0.033;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4237,418,0 chrIV 1483478 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3119,321,0 chrIV 1483867 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3146,310,0 chrIV 1484273 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2379,237,0 chrIV 1484422 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=25.38;ReadPosRankSum=1.649;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:2165,225,0 chrIV 1484599 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.20;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2705,268,0 chrIV 1484729 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.93;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3048,310,0 chrIV 1484733 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.410;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.039;QD=23.76;ReadPosRankSum=1.677;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3027,304,0 chrIV 1484812 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.07;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2225,222,0 chrIV 1484977 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.70;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2948,306,0 chrIV 1485012 . G T 3132 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.67;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3165,313,0 chrIV 1485210 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=27.39;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2662,259,0 chrIV 1485375 . A T 919 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.37;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:952,96,0 chrIV 1485403 . G A 54.97 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=30.5177;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=1.49;SB=-6.198e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:9:87,9,0 chrIV 1485510 . G A 459 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.86;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:492,48,0 chrIV 1485530 . T A 241.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.07;SB=-9.599e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:274,27,0 chrIV 1485542 . C T 199.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.90;SB=-1.478e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:232,24,0 chrIV 1485724 . T G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.000;QD=26.82;ReadPosRankSum=1.661;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2661,282,0 chrIV 1485812 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.54;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3715,382,0 chrIV 1486110 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3626;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.391;QD=24.62;ReadPosRankSum=1.683;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3570,361,0 chrIV 1486166 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=27.05;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3300,325,0 chrIV 1486178 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.95;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3425,355,0 chrIV 1486808 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0855;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.058;QD=23.37;ReadPosRankSum=1.709;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3576,361,0 chrIV 1487095 . T A 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=94;Dels=0.00;FS=8.661;HaplotypeScore=10.2242;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=-2.371;QD=23.83;ReadPosRankSum=2.293;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2273,225,0 chrIV 1487442 . C G 1993 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.73;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2026,210,0 chrIV 1487490 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.17;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1828,210,0 chrIV 1487491 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=90;Dels=0.00;FS=2.068;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.327;QD=20.17;ReadPosRankSum=3.317;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:4,85:90:99:1848,210,0 chrIV 1487875 . A G 2707 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=26.54;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2740,274,0 chrIV 1487917 . C A 1656 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.70;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1689,168,0 chrIV 1487920 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.47;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1571,162,0 chrIV 1487967 . A G 2266 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.4335;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.58;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2299,237,0 chrIV 1488034 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.69;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2568,255,0 chrIV 1488040 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.817;QD=21.76;ReadPosRankSum=1.699;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2340,234,0 chrIV 1488084 . A T 2154 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.67;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2187,225,0 chrIV 1488306 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.60;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3963,397,0 chrIV 1488447 . A C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=6.642;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.125;QD=24.31;ReadPosRankSum=2.420;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:4109,415,0 chrIV 1488682 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.87;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4272,442,0 chrIV 1488754 . C A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4023,412,0 chrIV 1488904 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.85;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3089,304,0 chrIV 1489122 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.73;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1754,174,0 chrIV 1489245 . C T 845 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.6210;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.12;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:42:87:878,87,0 chrIV 1489544 . A T 1545 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.88;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1578,156,0 chrIV 1489545 . A T 1528 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.37;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,156,0 chrIV 1489546 . A T 1527 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.36;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1560,156,0 chrIV 1489717 . G C 2241 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.76;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2274,234,0 chrIV 1490059 . G T 2462 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2495,255,0 chrIV 1490249 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3688,390,0 chrIV 1490594 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3532,346,0 chrIV 1490862 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.15;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2464,243,0 chrIV 1490977 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.16;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2448,255,0 chrIV 1491114 . A C 2944 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.52;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2977,306,0 chrIV 1491138 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.425;QD=25.74;ReadPosRankSum=1.611;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2967,306,0 chrIV 1491321 . C G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.03;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3340,348,0 chrIV 1491446 . A T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=27.52;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4403,442,0 chrIV 1491519 . C T 5181.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.8827;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.91;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5181,514,0 chrIV 1491574 . G A 5588.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=27.00;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5588,547,0 chrIV 1491605 . T A 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.364;QD=25.21;ReadPosRankSum=1.697;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4916,484,0 chrIV 1491619 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.39;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4491,463,0 chrIV 1491666 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.56;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4452,454,0 chrIV 1491852 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.2463;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.86;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4151,427,0 chrIV 1491879 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.69;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4333,448,0 chrIV 1491889 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.74;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4479,451,0 chrIV 1491939 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.84;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3723,370,0 chrIV 1491981 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.217;QD=26.12;ReadPosRankSum=1.138;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4597,463,0 chrIV 1492309 . T G 3107 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.46;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3140,327,0 chrIV 1492576 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.73;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2351,231,0 chrIV 1492828 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=25.36;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3127,313,0 chrIV 1492922 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=25.69;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3673,387,0 chrIV 1493045 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=-0.212;QD=23.81;ReadPosRankSum=2.365;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3453,355,0 chrIV 1493055 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=23.56;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3369,346,0 chrIV 1493088 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=106.9072;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=22.98;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3043,298,0 chrIV 1493251 . A G 2188 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=24.58;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2221,228,0 chrIV 1493255 . C T 2271 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=24.16;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2304,228,0 chrIV 1493260 . G T 2181 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=22.26;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2214,228,0 chrIV 1493468 . G T 1885 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=20.27;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1918,189,0 chrIV 1493474 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.27;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1844,183,0 chrIV 1493509 . T A 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.641;HaplotypeScore=6.2894;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.016;QD=20.28;ReadPosRankSum=1.638;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2284,225,0 chrIV 1493527 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.29;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2407,240,0 chrIV 1493685 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=26.81;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3036,301,0 chrIV 1493732 . T G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=110;Dels=0.00;FS=9.656;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.206;QD=22.91;ReadPosRankSum=2.842;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:3,105:110:99:2553,264,0 chrIV 1493820 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=6.266;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.781;QD=21.17;ReadPosRankSum=2.419;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3429,355,0 chrIV 1493831 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2925;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.04;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3324,351,0 chrIV 1493869 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.65;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3616,358,0 chrIV 1493916 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=182;Dels=0.00;FS=2.454;HaplotypeScore=15.7047;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.503;QD=25.01;ReadPosRankSum=2.894;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4552,472,0 chrIV 1495218 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.06;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4065,391,0 chrIV 1495512 . A C 4734.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0509;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.30;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4734,490,0 chrIV 1495550 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.45;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5039,538,0 chrIV 1495580 . C A 5176.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.68;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5176,517,0 chrIV 1495680 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.48;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3275,325,0 chrIV 1495814 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.59;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1411,138,0 chrIV 1496034 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1149,117,0 chrIV 1496077 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.892;QD=25.59;ReadPosRankSum=1.680;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1722,177,0 chrIV 1496312 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.0916;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.709;QD=25.38;ReadPosRankSum=1.601;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3375,340,0 chrIV 1496691 . C A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.25;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4043,403,0 chrIV 1496788 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=4.431;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.363;QD=26.08;ReadPosRankSum=1.692;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4538,454,0 chrIV 1497133 . A T 7256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=283;Dels=0.00;FS=2.980;HaplotypeScore=14.3367;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.863;QD=25.64;ReadPosRankSum=2.389;SB=-3.749e+03 GT:AD:DP:GQ:PL 1/1:2,281:283:99:7256,724,0 chrIV 1497214 . G A 6483.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.04;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6483,637,0 chrIV 1497679 . G C 3091 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.44;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3124,324,0 chrIV 1497793 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.73;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2928,295,0 chrIV 1497881 . T C 2280 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2313,240,0 chrIV 1497922 . T A 2184 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6951;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2217,219,0 chrIV 1498087 . C G 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.249;QD=22.29;ReadPosRankSum=1.704;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2797,276,0 chrIV 1498175 . A T 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.771;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.460;QD=25.80;ReadPosRankSum=1.698;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2665,267,0 chrIV 1498527 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.8103;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.81;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3407,331,0 chrIV 1498564 . C G 2614 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.38;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2647,270,0 chrIV 1498915 . T C 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.092;QD=24.29;ReadPosRankSum=1.674;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2924,298,0 chrIV 1498969 . G C 2510 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2543,258,0 chrIV 1499290 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.00;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2721,268,0 chrIV 1499328 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.86;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2753,274,0 chrIV 1499382 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.301;QD=21.35;ReadPosRankSum=1.582;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1997,204,0 chrIV 1499487 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6662;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2739,271,0 chrIV 1500051 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2738,270,0 chrIV 1500134 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.33;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2223,219,0 chrIV 1500757 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.01;FS=2.881;HaplotypeScore=23.1376;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.859;QD=25.34;ReadPosRankSum=2.401;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2592,267,0 chrIV 1500945 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9275;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=26.37;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2143,210,0 chrIV 1501006 . A C 2512 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=25.37;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2545,258,0 chrIV 1501020 . T C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.01;FS=6.295;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.626;QD=23.40;ReadPosRankSum=1.591;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2350,243,0 chrIV 1501077 . T A 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=68;Dels=0.00;FS=9.631;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.597;QD=18.16;ReadPosRankSum=2.718;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1268,129,0 chrIV 1501132 . G C 2435 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=25.36;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2468,246,0 chrIV 1501182 . G C 2601 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=25.75;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2634,267,0 chrIV 1501212 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=23.86;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1966,207,0 chrIV 1501236 . T A 1466 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=21.56;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1499,150,0 chrIV 1501238 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=21.15;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1450,147,0 chrIV 1501321 . T A 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=0.293;QD=21.22;ReadPosRankSum=1.705;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2792,294,0 chrIV 1501322 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=3.040;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-1.555;QD=21.79;ReadPosRankSum=2.412;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2909,297,0 chrIV 1501359 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.94;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2761,268,0 chrIV 1501368 . C G 2408 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4495;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.08;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2441,255,0 chrIV 1501404 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.53;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2845,283,0 chrIV 1501453 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.234;QD=26.41;ReadPosRankSum=1.708;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3856,399,0 chrIV 1501555 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=148;Dels=0.00;FS=2.975;HaplotypeScore=15.2997;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.739;QD=21.36;ReadPosRankSum=2.333;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3195,342,0 chrIV 1501681 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=15.1057;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.180;QD=24.98;ReadPosRankSum=2.403;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3947,403,0 chrIV 1501840 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=24.44;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3422,343,0 chrIV 1501879 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.29;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3364,354,0 chrIV 1501882 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.21;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3528,343,0 chrIV 1501936 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.23;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2725,276,0 chrIV 1502106 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.95;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2862,294,0 chrIV 1502303 . C G 2990 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.70;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3023,310,0 chrIV 1502377 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.88;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2750,291,0 chrIV 1502494 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.527;QD=21.97;ReadPosRankSum=1.527;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2626,264,0 chrIV 1502550 . A G 2919 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.95;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2952,298,0 chrIV 1502571 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.64;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2596,261,0 chrIV 1502666 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.43;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2276,234,0 chrIV 1502742 . T A 1920 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.33;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1953,204,0 chrIV 1502817 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=26.30;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2321,225,0 chrIV 1502831 . T G 2100 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.65;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2133,216,0 chrIV 1502849 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.53;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2083,204,0 chrIV 1502908 . C G 1774 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.90;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1807,186,0 chrIV 1503023 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.764;QD=23.42;ReadPosRankSum=1.620;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2211,228,0 chrIV 1503206 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.220;QD=26.02;ReadPosRankSum=1.705;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3305,331,0 chrIV 1503301 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.573;QD=24.47;ReadPosRankSum=1.692;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4258,424,0 chrIV 1503303 . G A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.22;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4288,418,0 chrIV 1503329 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.8794;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.73;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3737,376,0 chrIV 1503587 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=182;Dels=0.00;FS=2.959;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=1.194;QD=25.24;ReadPosRankSum=2.382;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4594,466,0 chrIV 1503593 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=180;Dels=0.00;FS=2.942;HaplotypeScore=7.1839;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.159;QD=23.23;ReadPosRankSum=2.339;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4181,433,0 chrIV 1503632 . T A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=24.91;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4060,412,0 chrIV 1503648 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=25.34;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3927,388,0 chrIV 1503693 . G C 4723.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.8701;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=26.09;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4723,490,0 chrIV 1503776 . A G 3140 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=20.26;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3173,333,0 chrIV 1503861 . A G 347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.988;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;MQRankSum=0.972;QD=4.18;ReadPosRankSum=1.690;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:39:380,39,0 chrIV 1503884 . A C 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.543;DP=120;Dels=0.00;FS=2.891;HaplotypeScore=27.0622;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=0;MQRankSum=-2.917;QD=0.10;ReadPosRankSum=0.400;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:43,77:120:42:42,0,356 chrIV 1503885 . A G 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.209;DP=117;Dels=0.00;FS=3.013;HaplotypeScore=27.0622;MLEAC=1;MLEAF=0.500;MQ=30.91;MQ0=0;MQRankSum=-3.272;QD=0.14;ReadPosRankSum=-0.233;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:40,77:117:46:46,0,351 chrIV 1503887 . G A 292.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DP=108;Dels=0.00;FS=0.922;HaplotypeScore=27.0622;MLEAC=1;MLEAF=0.500;MQ=31.23;MQ0=0;MQRankSum=5.059;QD=2.70;ReadPosRankSum=2.132;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:77,31:108:46:322,0,46 chrIV 1503889 . C T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=107;Dels=0.00;FS=0.924;HaplotypeScore=27.0622;MLEAC=1;MLEAF=0.500;MQ=30.84;MQ0=0;MQRankSum=-3.651;QD=0.11;ReadPosRankSum=-3.443;SB=-5.290e+02 GT:AD:DP:GQ:PL 0/1:30,77:107:41:41,0,311 chrIV 1503903 . G A 245.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;DP=46;Dels=0.00;FS=16.358;HaplotypeScore=14.7293;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=1;MQRankSum=-0.723;QD=5.33;ReadPosRankSum=-5.332;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:14,32:46:49:275,0,49 chrIV 1503906 . G C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=51;Dels=0.00;FS=15.711;HaplotypeScore=126.2658;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=1;MQRankSum=1.649;QD=0.22;ReadPosRankSum=5.411;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:36,14:51:41:41,0,283 chrIV 1503921 . G A 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=97;Dels=0.00;FS=6.136;HaplotypeScore=104.2088;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=3;MQRankSum=-0.885;QD=7.89;ReadPosRankSum=-1.358;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:14,80:97:90:798,90,0 chrIV 1503947 . G A 713.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.435;DP=190;Dels=0.00;FS=0.562;HaplotypeScore=15.4539;MLEAC=1;MLEAF=0.500;MQ=32.07;MQ0=5;MQRankSum=2.056;QD=3.75;ReadPosRankSum=-3.543;SB=-4.580e+02 GT:AD:DP:GQ:PL 0/1:118,71:190:99:743,0,1351 chrIV 1503965 . G A 1624.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.498;DP=208;Dels=0.00;FS=3.645;HaplotypeScore=1.5518;MLEAC=1;MLEAF=0.500;MQ=31.91;MQ0=5;MQRankSum=-1.361;QD=7.81;ReadPosRankSum=-2.569;SB=-8.460e+02 GT:AD:DP:GQ:PL 0/1:64,144:208:99:1654,0,745 chrIV 1503983 . G A 364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.079;DP=276;Dels=0.00;FS=28.145;HaplotypeScore=88.9138;MLEAC=1;MLEAF=0.500;MQ=32.27;MQ0=4;MQRankSum=1.700;QD=1.32;ReadPosRankSum=4.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,39:276:99:394,0,2493 chrIV 1503993 . G A 3993.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.653;DP=257;Dels=0.00;FS=93.301;HaplotypeScore=208.2642;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=4;MQRankSum=-1.425;QD=15.54;ReadPosRankSum=2.949;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:29,228:257:99:3993,426,0 chrIV 1504019 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.554;DP=250;Dels=0.00;FS=72.928;HaplotypeScore=27.6895;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=2;MQRankSum=-0.039;QD=12.72;ReadPosRankSum=7.086;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:45,205:250:99:3214,354,0 chrIV 1504024 . C T 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=241;Dels=0.00;FS=99.925;HaplotypeScore=33.2210;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=2;MQRankSum=-2.651;QD=12.26;ReadPosRankSum=6.981;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:27,213:241:99:2988,327,0 chrIV 1504046 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;DP=229;Dels=0.00;FS=6.134;HaplotypeScore=11.1302;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;MQRankSum=3.554;QD=15.66;ReadPosRankSum=0.959;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:7,221:229:99:3585,399,0 chrIV 1504103 . G A 7445.01 filter AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=14.9450;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=21;QD=20.80;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,357:358:99:7445,757,0 chrIV 1504127 . G A 621.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DP=453;Dels=0.00;FS=94.820;HaplotypeScore=31.7251;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=41;MQRankSum=-3.374;QD=1.37;ReadPosRankSum=-3.057;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:348,101:453:99:651,0,6393 chrIV 1504175 . G A 1128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.143;DP=428;Dels=0.00;FS=139.196;HaplotypeScore=22.7309;MLEAC=1;MLEAF=0.500;MQ=35.36;MQ0=35;MQRankSum=-1.516;QD=2.64;ReadPosRankSum=1.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:312,114:428:99:1158,0,4958 chrIV 1504193 . A G 5277.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.049;DP=388;Dels=0.00;FS=108.509;HaplotypeScore=18.2854;MLEAC=1;MLEAF=0.500;MQ=38.00;MQ0=23;MQRankSum=2.510;QD=13.60;ReadPosRankSum=4.155;SB=-2.984e+03 GT:AD:DP:GQ:PL 0/1:87,298:388:99:5277,0,667 chrIV 1504222 . T C 7160.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=336;Dels=0.00;FS=39.575;HaplotypeScore=29.9505;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=4;MQRankSum=5.202;QD=21.31;ReadPosRankSum=1.411;SB=-3.860e+03 GT:AD:DP:GQ:PL 1/1:16,318:336:99:7160,751,0 chrIV 1504234 . G A 6087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.993;DP=342;Dels=0.00;FS=85.351;HaplotypeScore=41.3405;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=7.532;QD=17.80;ReadPosRankSum=5.805;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:56,283:342:99:6087,145,0 chrIV 1504290 . A G 10951.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.987;DP=563;Dels=0.00;FS=5.976;HaplotypeScore=32.4690;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=22;MQRankSum=-2.289;QD=19.45;ReadPosRankSum=2.905;SB=-6.364e+03 GT:AD:DP:GQ:PL 1/1:3,556:563:99:10951,1099,0 chrIV 1504297 . C T 1775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.604;DP=566;Dels=0.00;FS=6.869;HaplotypeScore=35.1186;MLEAC=1;MLEAF=0.500;MQ=40.84;MQ0=26;MQRankSum=-5.593;QD=3.14;ReadPosRankSum=3.940;SB=-1.200e+03 GT:AD:DP:GQ:PL 0/1:345,212:566:99:1805,0,5028 chrIV 1504301 . T C 2438.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.967;DP=572;Dels=0.00;FS=4.829;HaplotypeScore=34.9941;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=26;MQRankSum=-5.545;QD=4.26;ReadPosRankSum=2.763;SB=-1.640e+03 GT:AD:DP:GQ:PL 0/1:345,224:572:99:2468,0,5092 chrIV 1504322 . G A 3959.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.778;DP=574;Dels=0.00;FS=3.729;HaplotypeScore=32.0298;MLEAC=1;MLEAF=0.500;MQ=38.29;MQ0=39;MQRankSum=5.381;QD=6.90;ReadPosRankSum=3.085;SB=-2.321e+03 GT:AD:DP:GQ:PL 0/1:260,313:574:99:3959,0,2708 chrIV 1504370 . G A 3385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.744;DP=388;Dels=0.00;FS=20.465;HaplotypeScore=42.4527;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=41;MQRankSum=5.104;QD=8.72;ReadPosRankSum=-4.386;SB=-1.228e+03 GT:AD:DP:GQ:PL 0/1:123,264:388:99:3385,0,530 chrIV 1504373 . G A 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=388;Dels=0.00;FS=59.992;HaplotypeScore=40.8754;MLEAC=1;MLEAF=0.500;MQ=35.42;MQ0=40;MQRankSum=-2.416;QD=0.53;ReadPosRankSum=1.593;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:300,88:388:99:234,0,3845 chrIV 1504388 . G A 3602.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;DP=354;Dels=0.00;FS=17.102;HaplotypeScore=16.3293;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=27;MQRankSum=6.867;QD=10.18;ReadPosRankSum=7.145;SB=-1.696e+03 GT:AD:DP:GQ:PL 0/1:100,254:354:99:3602,0,141 chrIV 1504438 . T C 3730.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.718;DP=383;Dels=0.00;FS=150.288;HaplotypeScore=18.9718;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=1;MQRankSum=6.166;QD=9.74;ReadPosRankSum=3.107;SB=-3.537e+03 GT:AD:DP:GQ:PL 0/1:50,333:383:96:3730,0,96 chrIV 1504439 . A G 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=389;Dels=0.00;FS=146.646;HaplotypeScore=19.7605;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=1;MQRankSum=-7.482;QD=0.15;ReadPosRankSum=-2.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:339,50:389:89:89,0,3650 chrIV 1504445 . T C 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;DP=366;Dels=0.00;FS=159.873;HaplotypeScore=20.5926;MLEAC=1;MLEAF=0.500;MQ=33.67;MQ0=1;MQRankSum=-5.327;QD=0.44;ReadPosRankSum=-2.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,55:366:99:190,0,3397 chrIV 1504449 . G A 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;DP=378;Dels=0.00;FS=158.178;HaplotypeScore=23.8019;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=1;MQRankSum=-5.046;QD=0.58;ReadPosRankSum=-1.582;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,60:378:99:250,0,3122 chrIV 1504461 . T A 1507.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.420;DP=287;Dels=0.00;FS=204.743;HaplotypeScore=24.8354;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=1;MQRankSum=5.618;QD=5.25;ReadPosRankSum=10.359;SB=-2.185e+03 GT:AD:DP:GQ:PL 0/1:77,208:287:99:1537,0,571 chrIV 1504463 . A T 1514.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=283;Dels=0.00;FS=208.685;HaplotypeScore=23.0454;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=1;MQRankSum=5.190;QD=5.35;ReadPosRankSum=11.571;SB=-2.214e+03 GT:AD:DP:GQ:PL 0/1:79,204:283:99:1544,0,563 chrIV 1504465 . C G 1310.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.916;DP=282;Dels=0.00;FS=207.856;HaplotypeScore=38.6259;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=1;MQRankSum=4.488;QD=4.65;ReadPosRankSum=11.929;SB=-2.189e+03 GT:AD:DP:GQ:PL 0/1:79,203:282:99:1340,0,543 chrIV 1504466 . G A 1298.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=281;Dels=0.00;FS=204.932;HaplotypeScore=38.6259;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=1;MQRankSum=3.013;QD=4.62;ReadPosRankSum=12.050;SB=-2.208e+03 GT:AD:DP:GQ:PL 0/1:78,203:281:99:1328,0,563 chrIV 1504468 . C A 1316.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.580;DP=278;Dels=0.00;FS=184.512;HaplotypeScore=39.0546;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=3.295;QD=4.73;ReadPosRankSum=12.056;SB=-2.245e+03 GT:AD:DP:GQ:PL 0/1:76,202:278:99:1346,0,543 chrIV 1504470 . A G 1297.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.351;DP=278;Dels=0.00;FS=150.383;HaplotypeScore=40.0881;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=4.674;QD=4.67;ReadPosRankSum=9.812;SB=-2.485e+03 GT:AD:DP:GQ:PL 0/1:59,219:278:99:1327,0,580 chrIV 1504474 . A C 1486.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.564;DP=294;Dels=0.00;FS=189.072;HaplotypeScore=38.3416;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=3;MQRankSum=3.798;QD=5.05;ReadPosRankSum=10.755;SB=-2.343e+03 GT:AD:DP:GQ:PL 0/1:75,219:294:99:1516,0,577 chrIV 1504493 . A G 1101 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=6;MQRankSum=1.277;QD=6.08;ReadPosRankSum=1.712;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:1134,120,0 chrIV 1504507 . C T 656 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.014;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2308;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=14;MQRankSum=1.514;QD=4.52;ReadPosRankSum=0.887;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:5,136:145:75:689,75,0 chrIV 1504511 . T C 591 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;DP=133;Dels=0.00;FS=1.891;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=14;MQRankSum=2.057;QD=4.44;ReadPosRankSum=2.779;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:8,125:133:66:624,66,0 chrIV 1504520 . T A 514 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=132;Dels=0.00;FS=11.772;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=15;MQRankSum=-2.440;QD=3.89;ReadPosRankSum=2.940;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:57:547,57,0 chrIV 1504541 . A G 1477 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=169;Dels=0.00;FS=4.328;HaplotypeScore=20.4059;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=15;MQRankSum=-1.221;QD=8.74;ReadPosRankSum=1.709;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,164:169:99:1510,165,0 chrIV 1504583 . G A 5387.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.118;DP=301;Dels=0.00;FS=45.954;HaplotypeScore=5.7164;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=13;MQRankSum=5.255;QD=17.90;ReadPosRankSum=-0.757;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:16,285:301:99:5387,524,0 chrIV 1504663 . T C 7507.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=13.7003;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=21.03;SB=-4.114e+03 GT:AD:DP:GQ:PL 1/1:0,356:357:99:7507,772,0 chrIV 1504680 . A G 115.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.168;DP=319;Dels=0.00;FS=1.609;HaplotypeScore=15.8702;MLEAC=1;MLEAF=0.500;MQ=44.04;MQ0=0;MQRankSum=-7.655;QD=0.36;ReadPosRankSum=-6.478;SB=-5.060e+02 GT:AD:DP:GQ:PL 0/1:244,75:319:99:145,0,5031 chrIV 1504685 . T C 419.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DP=331;Dels=0.00;FS=10.518;HaplotypeScore=26.2462;MLEAC=1;MLEAF=0.500;MQ=43.45;MQ0=0;MQRankSum=-7.240;QD=1.27;ReadPosRankSum=-3.345;SB=-7.680e+02 GT:AD:DP:GQ:PL 0/1:232,95:331:99:449,0,4663 chrIV 1504689 . T G 624.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.026;DP=326;Dels=0.00;FS=16.131;HaplotypeScore=19.2575;MLEAC=1;MLEAF=0.500;MQ=42.87;MQ0=0;MQRankSum=-7.137;QD=1.91;ReadPosRankSum=0.375;SB=-8.030e+02 GT:AD:DP:GQ:PL 0/1:216,107:326:99:654,0,4332 chrIV 1504713 . A G 258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.053;DP=233;Dels=0.00;FS=70.065;HaplotypeScore=11.3639;MLEAC=1;MLEAF=0.500;MQ=38.29;MQ0=0;MQRankSum=3.099;QD=1.11;ReadPosRankSum=-8.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,57:233:99:288,0,2444 chrIV 1504938 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=21.37;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2277,228,0 chrIV 1504947 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=5.735;HaplotypeScore=3.2453;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=0.546;QD=20.06;ReadPosRankSum=2.728;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2039,213,0 chrIV 1504951 . C G 2143 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=21.65;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2176,228,0 chrIV 1504971 . C A 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=21.07;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2266,225,0 chrIV 1504976 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=18.88;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2034,204,0 chrIV 1505138 . T A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=28.99;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4233,418,0 chrIV 1505397 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=-1.656;QD=23.85;ReadPosRankSum=1.656;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2203,225,0 chrIV 1505437 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.392;QD=24.23;ReadPosRankSum=1.634;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2601,270,0 chrIV 1505562 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=18.8099;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.79;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2221,222,0 chrIV 1505642 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.37;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1861,189,0 chrIV 1505691 . G C 813 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=16.26;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:87:846,87,0 chrIV 1505703 . A G 612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=9.108;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;MQRankSum=-1.815;QD=15.69;ReadPosRankSum=2.197;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:66:645,66,0 chrIV 1505716 . T C 444 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=14.80;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:477,48,0 chrIV 1505722 . C T 431 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=15.96;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:464,48,0 chrIV 1505728 . G A 298 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=14.90;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:331,33,0 chrIV 1505809 . C G 2409 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.42;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2442,249,0 chrIV 1505850 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=85.8414;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.06;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2224,219,0 chrIV 1505951 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=26.74;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3396,346,0 chrIV 1506008 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=25.46;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2935,300,0 chrIV 1506542 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4141;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.94;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5369,547,0 chrIV 1506740 . A G 5320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=214;Dels=0.00;FS=6.719;HaplotypeScore=19.0690;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.405;QD=24.86;ReadPosRankSum=2.415;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5320,559,0 chrIV 1506853 . C T 4970.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.97;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4970,487,0 chrIV 1506970 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.77;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3267,328,0 chrIV 1506992 . G C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.79;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3307,334,0 chrIV 1507078 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.56;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3836,397,0 chrIV 1507082 . C G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.35;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3777,385,0 chrIV 1507540 . T G 5238.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=10.9643;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.05;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5238,541,0 chrIV 1507606 . T C 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=215;Dels=0.00;FS=8.540;HaplotypeScore=18.5279;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.017;QD=23.14;ReadPosRankSum=2.415;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4976,517,0 chrIV 1507780 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.3658;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.94;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3175,313,0 chrIV 1507981 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=104;Dels=0.00;FS=10.249;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.442;QD=24.08;ReadPosRankSum=2.402;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2537,258,0 chrIV 1508454 . G A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.41;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4223,442,0 chrIV 1508550 . T C 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=179;Dels=0.00;FS=3.024;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.983;QD=26.56;ReadPosRankSum=2.422;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4755,490,0 chrIV 1508583 . G T 5099.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.62;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5099,514,0 chrIV 1508644 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.71;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4653,463,0 chrIV 1509300 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.227;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.684;QD=23.51;ReadPosRankSum=-0.265;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3409,324,0 chrIV 1509719 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=91.8183;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.79;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2299,240,0 chrIV 1509960 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.439;QD=25.03;ReadPosRankSum=1.686;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1910,198,0 chrIV 1510040 . G T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=28.20;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3863,376,0 chrIV 1510214 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=26.33;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4818,475,0 chrIV 1510368 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=20.37;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4196,415,0 chrIV 1510383 . A C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=3.571;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;MQRankSum=-0.980;QD=18.83;ReadPosRankSum=1.680;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3729,379,0 chrIV 1510411 . A G 3032 SnpCluster AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=14.44;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3065,321,0 chrIV 1510417 . G A 2678 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=12.87;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:2711,276,0 chrIV 1510421 . G T 2394 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=12.73;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:2427,258,0 chrIV 1510422 . G A 2442 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=12.92;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:2475,258,0 chrIV 1510501 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.9472;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=21.40;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3243,316,0 chrIV 1510510 . C A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=23.95;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3592,346,0 chrIV 1510552 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=188;Dels=0.00;FS=9.405;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.372;QD=22.59;ReadPosRankSum=2.371;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4246,430,0 chrIV 1510882 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.66;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4481,442,0 chrIV 1511013 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=25.73;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:5146,520,0 chrIV 1511041 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8484;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=24.61;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5143,544,0 chrIV 1511078 . C T 5799.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.57;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5799,586,0 chrIV 1511153 . C A 5977.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=19.8905;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.92;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5977,589,0 chrIV 1511227 . C T 5448.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.3357;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.69;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5448,553,0 chrIV 1511255 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=221;Dels=0.00;FS=7.696;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.887;QD=20.40;ReadPosRankSum=2.204;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4508,463,0 chrIV 1511261 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.90;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4063,424,0 chrIV 1511348 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.9576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3669,370,0 chrIV 1511510 . G T 2846 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.19;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2879,283,0 chrIV 1511659 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3066,301,0 chrIV 1511886 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=6.561;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.108;QD=25.02;ReadPosRankSum=2.371;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3161,327,0 chrIV 1512312 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3683,382,0 chrIV 1512432 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.31;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3796,376,0 chrIV 1512633 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.100;QD=26.06;ReadPosRankSum=1.656;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4717,490,0 chrIV 1512804 . G A 6426.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=13.4314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:6426,643,0 chrIV 1513649 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.177;HaplotypeScore=7.3219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.46;ReadPosRankSum=2.334;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1942,201,0 chrIV 1513839 . G T 2802 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2835,291,0 chrIV 1514209 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=125;Dels=0.00;FS=9.459;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.928;QD=23.98;ReadPosRankSum=2.847;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3031,312,0 chrIV 1514235 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.72;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2879,297,0 chrIV 1514258 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.329;QD=23.99;ReadPosRankSum=1.672;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2840,288,0 chrIV 1514403 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6982;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.223;QD=24.80;ReadPosRankSum=1.676;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3108,319,0 chrIV 1514528 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.04;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3385,351,0 chrIV 1514569 . A T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.04;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3568,364,0 chrIV 1514712 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.10;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3289,336,0 chrIV 1514773 . A C 2387 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.90;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2420,249,0 chrIV 1514828 . A T 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.353;QD=23.16;ReadPosRankSum=1.651;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2997,309,0 chrIV 1515183 . T C 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.025;QD=25.37;ReadPosRankSum=1.714;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4846,496,0 chrIV 1515216 . A G 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.2879;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.958;QD=24.19;ReadPosRankSum=1.674;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4330,448,0 chrIV 1515237 . G T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.48;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3721,379,0 chrIV 1515303 . A T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4005,403,0 chrIV 1515455 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.173;QD=26.25;ReadPosRankSum=1.689;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4253,402,0 chrIV 1515582 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=3.769;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.626;QD=24.48;ReadPosRankSum=1.679;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:3280,337,0 chrIV 1515618 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.42;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3419,346,0 chrIV 1515661 . A G 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.301;QD=26.16;ReadPosRankSum=2.419;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:4159,427,0 chrIV 1515864 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.49;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:3266,339,0 chrIV 1515946 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=18.62;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2603,270,0 chrIV 1515956 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=15.94;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2488,258,0 chrIV 1515965 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=15.06;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2397,237,0 chrIV 1515986 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=12.83;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2112,219,0 chrIV 1516038 . T G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=186;Dels=0.00;FS=5.875;HaplotypeScore=14.6492;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.054;QD=22.22;ReadPosRankSum=2.952;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4132,424,0 chrIV 1516083 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=26.78;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5062,493,0 chrIV 1516127 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=23.27;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3770,385,0 chrIV 1516137 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=21.47;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3585,372,0 chrIV 1516250 . T G 5012.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=25.31;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5012,517,0 chrIV 1516301 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.70;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3769,370,0 chrIV 1516312 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4255;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.38;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3111,321,0 chrIV 1516441 . A G 4797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=191;Dels=0.00;FS=13.136;HaplotypeScore=20.3850;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.069;QD=25.12;ReadPosRankSum=3.350;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4797,499,0 chrIV 1516642 . A G 97.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.3637;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-0.714;QD=0.49;ReadPosRankSum=1.531;SB=-1.411e+02 GT:AD:DP:GQ:PL 1/1:1,16:198:15:130,15,0 chrIV 1516658 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=19.81;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3783,391,0 chrIV 1516666 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=19.74;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3830,382,0 chrIV 1516703 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.64;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:3467,355,0 chrIV 1516772 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.25;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4331,427,0 chrIV 1516810 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2267;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.54;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4240,430,0 chrIV 1516853 . T G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=26.47;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3600,364,0 chrIV 1516976 . G C 2575 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.76;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2608,264,0 chrIV 1517088 . T A 1015 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.90;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1048,108,0 chrIV 1517095 . C A 1006 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.35;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1039,108,0 chrIV 1517115 . C G 1013 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=15.12;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1046,105,0 chrIV 1517124 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=13.81;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1179,120,0 chrIV 1517222 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.89;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2480,252,0 chrIV 1517334 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.036;QD=23.23;ReadPosRankSum=1.708;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3369,343,0 chrIV 1517708 . A C 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.00;FS=4.239;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=0.075;QD=16.18;ReadPosRankSum=1.682;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1182,126,0 chrIV 1517709 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=16.17;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1181,129,0 chrIV 1517744 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=18.11;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1228,129,0 chrIV 1517745 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=17.55;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1191,129,0 chrIV 1517758 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.05;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1423,147,0 chrIV 1517833 . A G 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=100;Dels=0.03;FS=3.147;HaplotypeScore=10.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.018;QD=22.96;ReadPosRankSum=1.696;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2329,237,0 chrIV 1517934 . C A 3014 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=12.4047;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=27.15;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:3047,301,0 chrIV 1517966 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.260;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.212;QD=24.04;ReadPosRankSum=1.703;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2966,312,0 chrIV 1518137 . A G 4965.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=25.20;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4965,514,0 chrIV 1518269 . A G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=2.962;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-0.756;QD=25.69;ReadPosRankSum=2.422;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4548,469,0 chrIV 1518332 . T C 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.267;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.043;QD=22.94;ReadPosRankSum=1.715;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4679,478,0 chrIV 1518334 . C A 4622.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.22;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4622,472,0 chrIV 1518445 . A C 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-1.509;QD=15.92;ReadPosRankSum=1.676;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1036,105,0 chrIV 1518694 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=24.29;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2511,250,0 chrIV 1518926 . T A 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=3.021;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=-0.878;QD=17.94;ReadPosRankSum=2.265;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1468,156,0 chrIV 1518997 . C G 1364 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=15.86;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1397,141,0 chrIV 1519082 . G A 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.538;QD=21.03;ReadPosRankSum=1.533;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1863,207,0 chrIV 1519083 . A G 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-0.219;QD=20.89;ReadPosRankSum=1.613;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1871,207,0 chrIV 1519105 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=24.35;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2030,198,0 chrIV 1519177 . C A 2626 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=26.53;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2659,279,0 chrIV 1519267 . T C 2025 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6193;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=23.01;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2058,210,0 chrIV 1519279 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.7820;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=23.47;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2051,213,0 chrIV 1519310 . T G 1185 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-1.155;QD=16.23;ReadPosRankSum=1.684;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1218,132,0 chrIV 1519313 . C G 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=15.51;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1150,120,0 chrIV 1519316 . C A 1169 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=16.70;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1202,126,0 chrIV 1519393 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=22.14;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1804,183,0 chrIV 1519398 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=22.69;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1848,186,0 chrIV 1519407 . T C 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=0.082;QD=20.94;ReadPosRankSum=1.072;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1792,189,0 chrIV 1519429 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=22.50;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1968,198,0 chrIV 1519461 . A G 1233 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=17.12;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1266,132,0 chrIV 1519463 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.835;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;MQRankSum=-1.402;QD=16.86;ReadPosRankSum=2.382;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1264,135,0 chrIV 1519512 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=84;Dels=0.00;FS=2.881;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.134;QD=23.25;ReadPosRankSum=2.391;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1986,204,0 chrIV 1519563 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=24.15;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2279,228,0 chrIV 1519598 . T A 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.614;QD=21.47;ReadPosRankSum=2.902;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2889,288,0 chrIV 1519615 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=20.45;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2876,291,0 chrIV 1519618 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=19.75;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2838,300,0 chrIV 1519850 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.49;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4534,466,0 chrIV 1520098 . G C 4628.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.5200;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.85;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4628,481,0 chrIV 1520273 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=23.26;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4117,424,0 chrIV 1520281 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.78;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3919,388,0 chrIV 1520285 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.14;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3853,379,0 chrIV 1520813 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=26.06;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3160,316,0 chrIV 1520843 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1735;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.39;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3352,337,0 chrIV 1520921 . A G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.259;HaplotypeScore=8.1681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=26.07;ReadPosRankSum=1.668;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2875,294,0 chrIV 1521015 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.71;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3048,310,0 chrIV 1521043 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3939;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.69;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3018,306,0 chrIV 1521171 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3430,349,0 chrIV 1521256 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5336;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.73;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3319,331,0 chrIV 1521296 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.680;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.039;QD=25.56;ReadPosRankSum=1.707;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3630,373,0 chrIV 1521369 . A C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=183;Dels=0.00;FS=7.504;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.317;QD=26.83;ReadPosRankSum=2.409;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4909,502,0 chrIV 1521435 . A T 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=4.449;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.341;QD=24.92;ReadPosRankSum=1.697;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4885,481,0 chrIV 1521557 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=160.8734;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-1.061;QD=22.62;ReadPosRankSum=1.696;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4320,442,0 chrIV 1521594 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=7.903;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.401;QD=21.08;ReadPosRankSum=2.348;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4069,412,0 chrIV 1521638 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6668;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=21.94;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4081,447,0 chrIV 1521711 . T C 5019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.694;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.158;QD=25.10;ReadPosRankSum=1.645;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:5019,505,0 chrIV 1521834 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-1.569;QD=12.88;ReadPosRankSum=1.569;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1128,120,0 chrIV 1521941 . A G 2574 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.50;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2607,273,0 chrIV 1522055 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=1.662;QD=26.92;ReadPosRankSum=-0.174;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:4011,403,0 chrIV 1522245 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.151;QD=26.05;ReadPosRankSum=1.708;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3725,382,0 chrIV 1522332 . T C 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5209;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.604;QD=22.29;ReadPosRankSum=2.199;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2485,255,0 chrIV 1522334 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=3.013;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.174;QD=21.91;ReadPosRankSum=2.357;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2355,246,0 chrIV 1522398 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=18.40;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1321,126,0 chrIV 1522415 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=17.24;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1240,126,0 chrIV 1522423 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=53.6363;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=17.06;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1142,120,0 chrIV 1522501 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.81;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1327,132,0 chrIV 1522527 . T G 167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.748;HaplotypeScore=87.4103;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;MQRankSum=-2.328;QD=1.65;ReadPosRankSum=2.401;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:27:200,27,0 chrIV 1522539 . T C 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=0.429;QD=12.96;ReadPosRankSum=1.700;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1446,162,0 chrIV 1522544 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=12.67;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1452,156,0 chrIV 1522592 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=12.03;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1272,141,0 chrIV 1522616 . C T 906 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=8.71;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:96:939,96,0 chrIV 1522631 . G C 929 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=9.02;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:962,99,0 chrIV 1522634 . C T 835 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=8.61;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:90:868,90,0 chrIV 1522636 . G A 831 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=8.57;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:87:864,87,0 chrIV 1522649 . A G 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=110;Dels=0.00;FS=9.195;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;MQRankSum=0.609;QD=7.67;ReadPosRankSum=1.700;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:90:877,90,0 chrIV 1522700 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=14.92;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2151,243,0 chrIV 1522713 . T G 2631 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=0.334;QD=15.39;ReadPosRankSum=1.712;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2664,300,0 chrIV 1522718 . G A 2844 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=16.93;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2877,324,0 chrIV 1522722 . T C 2823 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=2.966;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;MQRankSum=-0.318;QD=16.22;ReadPosRankSum=2.365;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:2856,321,0 chrIV 1522755 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=-1.451;QD=20.14;ReadPosRankSum=1.713;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3766,417,0 chrIV 1522807 . C T 5520.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=24.53;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5520,550,0 chrIV 1522830 . T C 5583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=228;Dels=0.00;FS=12.194;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=1.277;QD=24.49;ReadPosRankSum=3.818;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:5,223:228:99:5583,574,0 chrIV 1522920 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;DP=205;Dels=0.00;FS=1.503;HaplotypeScore=14.7064;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-0.665;QD=18.33;ReadPosRankSum=3.543;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:7,198:205:99:3758,402,0 chrIV 1522934 . G T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=17.75;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3781,387,0 chrIV 1522967 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2494;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=12.58;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:2750,282,0 chrIV 1522973 . C T 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=216;Dels=0.01;FS=6.898;HaplotypeScore=26.0250;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-0.774;QD=11.24;ReadPosRankSum=2.427;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:2460,264,0 chrIV 1522982 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;MQRankSum=-0.955;QD=12.85;ReadPosRankSum=1.698;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:2668,270,0 chrIV 1522984 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=209;Dels=0.00;FS=3.002;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=-1.510;QD=12.39;ReadPosRankSum=2.414;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:2623,267,0 chrIV 1523060 . G C 4197.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.70;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4197,436,0 chrIV 1523071 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=204;Dels=0.00;FS=5.081;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;MQRankSum=-1.363;QD=21.31;ReadPosRankSum=2.850;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:4,199:204:99:4348,424,0 chrIV 1523096 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=-1.485;QD=22.57;ReadPosRankSum=2.411;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4311,445,0 chrIV 1523171 . G C 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.127;DP=181;Dels=0.00;FS=15.663;HaplotypeScore=38.2624;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=2.960;QD=22.87;ReadPosRankSum=-0.994;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,172:181:99:4139,421,0 chrIV 1523192 . G C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;DP=195;Dels=0.00;FS=34.123;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=5.316;QD=22.62;ReadPosRankSum=2.376;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:10,182:195:99:4410,451,0 chrIV 1523232 . A C 3790.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.292;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.6687;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=24;MQRankSum=1.630;QD=15.86;ReadPosRankSum=3.271;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:22,215:239:99:3790,297,0 chrIV 1523281 . C T 1742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;DP=375;Dels=0.00;FS=234.884;HaplotypeScore=48.0035;MLEAC=1;MLEAF=0.500;MQ=17.53;MQ0=146;MQRankSum=11.559;QD=4.65;ReadPosRankSum=-5.979;SB=-9.050e+02 GT:AD:DP:GQ:PL 0/1:273,102:375:80:1772,0,80 chrIV 1523284 . T C 1684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.841;DP=382;Dels=0.00;FS=246.930;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=16.56;MQ0=158;MQRankSum=11.504;QD=4.41;ReadPosRankSum=-6.346;SB=-8.690e+02 GT:AD:DP:GQ:PL 0/1:284,98:382:91:1714,0,91 chrIV 1523350 . T G 1127.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.424;DP=285;Dels=0.00;FS=90.342;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=14.82;MQ0=172;MQRankSum=8.401;QD=3.95;ReadPosRankSum=5.368;SB=-2.135e+00 GT:AD:DP:GQ:PL 1/1:143,142:285:5:1158,5,0 chrIV 1523440 . T C 1026.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.667;DP=284;Dels=0.00;FS=13.213;HaplotypeScore=26.5088;MLEAC=2;MLEAF=1.00;MQ=16.35;MQ0=116;MQRankSum=1.112;QD=3.62;ReadPosRankSum=-1.498;SB=-9.801e-01 GT:AD:DP:GQ:PL 1/1:75,206:284:9:1059,9,0 chrIV 1523482 . C T 313 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.916;DP=326;Dels=0.00;FS=2.338;HaplotypeScore=35.5087;MLEAC=2;MLEAF=1.00;MQ=10.29;MQ0=193;MQRankSum=6.933;QD=0.96;ReadPosRankSum=-4.383;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:206,117:326:36:346,36,0 chrIV 1523488 . G T 167.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.129;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=29.1732;MLEAC=2;MLEAF=1.00;MQ=8.80;MQ0=197;MQRankSum=6.246;QD=0.53;ReadPosRankSum=-4.374;SB=-2.954e+00 GT:AD:DP:GQ:PL 1/1:290,24:316:3:197,3,0 chrIV 1523861 . T G 35.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=0;QD=5.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:68,9,0 chrIV 1523888 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrIV 1524126 . G A 129.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=2;QD=6.15;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:162,21,0 chrIV 1524260 . A C 290 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=3;QD=7.84;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:39:323,39,0 chrIV 1524273 . C T 255.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.511;DP=34;Dels=0.00;FS=12.683;HaplotypeScore=11.4940;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=5;MQRankSum=0.779;QD=7.50;ReadPosRankSum=2.107;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:5,29:34:17:288,17,0 chrIV 1524292 . C A 295 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.805;DP=35;Dels=0.00;FS=17.927;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=7;MQRankSum=1.280;QD=8.43;ReadPosRankSum=2.528;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:4,31:35:39:328,39,0 chrIV 1524299 . C T 300 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=31;Dels=0.00;FS=8.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=7;MQRankSum=1.201;QD=9.68;ReadPosRankSum=1.514;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:39:333,39,0 chrIV 1524372 . C G 422 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=9;QD=5.34;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:48:455,48,0 chrIV 1524442 . G A 701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.746;DP=51;Dels=0.00;FS=1.796;HaplotypeScore=8.6346;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=1;MQRankSum=0.841;QD=13.75;ReadPosRankSum=1.132;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:6,45:51:56:734,56,0 chrIV 1524448 . A G 507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=39;Dels=0.00;FS=9.398;HaplotypeScore=6.9625;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=1;MQRankSum=0.541;QD=13.00;ReadPosRankSum=2.653;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:4,35:39:38:540,38,0 chrIV 1524478 . G A 510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=1;MQRankSum=0.510;QD=14.57;ReadPosRankSum=1.019;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:54:543,54,0 chrIV 1524489 . G A 249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=33;Dels=0.00;FS=15.911;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=1;MQRankSum=-0.074;QD=7.55;ReadPosRankSum=-2.451;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:3,26:33:30:282,30,0 chrIV 1524506 . G T 420 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8400;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=1;QD=13.12;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:51:453,51,0 chrIV 1524526 . T G 440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DP=37;Dels=0.00;FS=21.055;HaplotypeScore=8.6672;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=0;MQRankSum=-0.229;QD=11.89;ReadPosRankSum=1.316;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:3,33:37:54:473,54,0 chrIV 1524542 . C T 593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DP=48;Dels=0.00;FS=8.361;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=0;MQRankSum=0.361;QD=12.35;ReadPosRankSum=-0.289;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:69:626,69,0 chrIV 1524558 . T G 645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.913;DP=55;Dels=0.00;FS=9.622;HaplotypeScore=3.5542;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;MQRankSum=0.157;QD=11.73;ReadPosRankSum=1.480;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:75:678,75,0 chrIV 1524564 . C A 358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=56;Dels=0.00;FS=34.725;HaplotypeScore=3.7894;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=0;MQRankSum=-0.757;QD=6.39;ReadPosRankSum=1.378;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,43:56:99:388,0,213 chrIV 1524595 . G A 577 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=13.74;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:60:610,60,0 chrIV 1524599 . T C 543 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;QD=14.29;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:60:576,60,0 chrIV 1524601 . C T 568 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;QD=14.95;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:60:601,60,0 chrIV 1524606 . A G 533 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;QD=14.41;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:60:566,60,0 chrIV 1524609 . G A 567 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=0;QD=16.20;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:60:600,60,0 chrIV 1524612 . T C 545 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;QD=16.03;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:60:578,60,0 chrIV 1524615 . C A 536 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;QD=15.76;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:57:569,57,0 chrIV 1524619 . C T 488 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;QD=17.43;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:51:521,51,0 chrIV 1524620 . A T 484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=16.69;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:51:517,51,0 chrIV 1524638 . G T 209.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;DP=21;Dels=0.00;FS=25.092;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=1;MQRankSum=0.520;QD=9.95;ReadPosRankSum=0.425;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:5,16:21:45:239,0,45 chrIV 1524646 . G A 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.923;DP=24;Dels=0.00;FS=41.720;HaplotypeScore=5.8902;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=1;MQRankSum=2.431;QD=7.46;ReadPosRankSum=0.585;SB=0.406 GT:AD:DP:GQ:PL 0/1:13,11:24:99:209,0,182 chrIV 1524653 . G A 257 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=2;QD=11.17;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,21:23:36:290,36,0 chrIV 1524697 . T G 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.345;DP=39;Dels=0.00;FS=56.613;HaplotypeScore=10.6110;MLEAC=1;MLEAF=0.500;MQ=17.67;MQ0=5;MQRankSum=0.057;QD=4.87;ReadPosRankSum=-0.359;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:12,27:39:31:220,0,31 chrIV 1524698 . G A 228.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;DP=39;Dels=0.00;FS=48.654;HaplotypeScore=11.6077;MLEAC=1;MLEAF=0.500;MQ=17.67;MQ0=5;MQRankSum=-0.039;QD=5.86;ReadPosRankSum=-0.547;SB=-7.146e+01 GT:AD:DP:GQ:PL 0/1:11,28:39:1:257,0,1 chrIV 1524700 . A T 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;DP=39;Dels=0.00;FS=56.613;HaplotypeScore=7.7854;MLEAC=1;MLEAF=0.500;MQ=17.67;MQ0=5;MQRankSum=-0.397;QD=5.49;ReadPosRankSum=-0.510;SB=-3.802e+01 GT:AD:DP:GQ:PL 0/1:12,27:39:29:244,0,29 chrIV 1524740 . C T 10.44 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;DP=31;Dels=0.00;FS=5.863;HaplotypeScore=1.9667;MLEAC=1;MLEAF=0.500;MQ=15.53;MQ0=4;MQRankSum=-1.733;QD=0.34;ReadPosRankSum=0.321;SB=-5.507e+01 GT:AD:DP:GQ:PL 0/1:1,30:31:19:40,0,19 chrIV 1524751 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.9237;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=1;QD=0.83;SB=-4.380e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:6:51,6,0 chrIV 1524793 . G A 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=31;Dels=0.00;FS=5.563;HaplotypeScore=11.6808;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=13;MQRankSum=2.859;QD=3.19;ReadPosRankSum=1.183;SB=7.143e-03 GT:AD:DP:GQ:PL 0/1:20,11:31:51:129,0,51 chrIV 1524804 . A G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=32;Dels=0.00;FS=13.570;HaplotypeScore=5.8404;MLEAC=1;MLEAF=0.500;MQ=15.33;MQ0=17;MQRankSum=3.001;QD=2.72;ReadPosRankSum=1.164;SB=7.160e-03 GT:AD:DP:GQ:PL 0/1:19,13:32:86:117,0,86 chrIV 1524832 . A G 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=43;Dels=0.00;FS=30.584;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=13.30;MQ0=26;MQRankSum=-0.741;QD=1.28;ReadPosRankSum=0.635;SB=-6.881e+00 GT:AD:DP:GQ:PL 0/1:35,7:43:85:85,0,113 chrIV 1524838 . G T 293 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.00;MQ0=27;QD=6.51;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:36:326,36,0 chrIV 1524886 . T C 620 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=84;Dels=0.00;FS=5.812;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=23;MQRankSum=-2.485;QD=7.38;ReadPosRankSum=2.885;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:72:653,72,0 chrIV 1524901 . G A 916 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=99;Dels=0.00;FS=5.022;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=20;MQRankSum=2.389;QD=9.25;ReadPosRankSum=1.949;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:17,80:99:74:949,74,0 chrIV 1524949 . G A 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.678;DP=66;Dels=0.00;FS=5.051;HaplotypeScore=8.8456;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=2;MQRankSum=-0.379;QD=16.45;ReadPosRankSum=0.433;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:95:1119,95,0 chrIV 1524974 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=25.1292;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=2;QD=26.91;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:87:894,87,0 chrIV 1525003 . G C 60.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=5.7781;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=6.72;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:93,12,0 chrIV 1525071 . G A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;DP=40;Dels=0.00;FS=10.300;HaplotypeScore=14.2699;MLEAC=1;MLEAF=0.500;MQ=17.31;MQ0=15;MQRankSum=0.728;QD=1.00;ReadPosRankSum=0.845;SB=-5.433e-03 GT:AD:DP:GQ:PL 0/1:23,17:40:61:70,0,61 chrIV 1525091 . T C 467.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;DP=57;Dels=0.00;FS=17.589;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=15;MQRankSum=2.103;QD=8.20;ReadPosRankSum=0.485;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:21,36:57:2:497,2,0 chrIV 1525098 . G A 560.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.467;DP=62;Dels=0.00;FS=20.338;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=15;MQRankSum=1.501;QD=9.04;ReadPosRankSum=0.535;SB=-4.214e-01 GT:AD:DP:GQ:PL 1/1:20,42:62:13:593,13,0 chrIV 1525125 . T C 874 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=1;QD=16.81;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:93:907,93,0 chrIV 1525131 . G A 737 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=50;Dels=0.00;FS=30.881;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;MQRankSum=-1.163;QD=14.74;ReadPosRankSum=0.668;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:2,48:50:33:770,33,0 chrIV 1525139 . G A 797 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.571;DP=45;Dels=0.00;FS=25.185;HaplotypeScore=39.5868;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=0.978;QD=17.71;ReadPosRankSum=2.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,42:45:84:830,84,0 chrIV 1525140 . T C 785 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.480;DP=45;Dels=0.00;FS=25.185;HaplotypeScore=39.5868;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=1.342;QD=17.44;ReadPosRankSum=2.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,42:45:84:818,84,0 chrIV 1525147 . G C 285 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.737;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.7899;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;MQRankSum=0.409;QD=7.13;ReadPosRankSum=-5.099;SB=3.00 GT:AD:DP:GQ:PL 1/1:24,14:40:33:318,33,0 chrIV 1525148 . A T 248.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=40;Dels=0.00;FS=2.730;HaplotypeScore=13.7899;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=0;MQRankSum=-0.581;QD=6.21;ReadPosRankSum=-4.381;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:26,14:40:10:278,0,10 chrIV 1525172 . A G 193.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=10.72;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:226,24,0 chrIV 1525176 . G A 119.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=1.203;QD=9.17;ReadPosRankSum=1.470;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:152,15,0 chrIV 1525177 . G A 118.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=1.203;QD=9.10;ReadPosRankSum=0.401;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:151,15,0 chrIV 1525183 . G A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=0.751;QD=2.97;ReadPosRankSum=0.751;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:1,8:9:6:58,6,0 chrIV 1525272 . A G 19.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=11;Dels=0.00;FS=17.404;HaplotypeScore=3.9825;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=0.589;QD=1.73;ReadPosRankSum=-0.118;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:2,9:11:21:49,0,21 chrIV 1525274 . T A 56.97 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9867;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=1;QD=4.75;SB=-6.095e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:89,9,0 chrIV 1525289 . G A 17.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=17;Dels=0.00;FS=9.031;HaplotypeScore=5.5647;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=1;MQRankSum=1.573;QD=1.01;ReadPosRankSum=2.440;SB=1.17 GT:AD:DP:GQ:PL 0/1:7,10:17:23:47,0,23 chrIV 1525290 . G T 30.80 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.254;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.5647;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=1;MQRankSum=2.113;QD=1.81;ReadPosRankSum=2.451;SB=20.23 GT:AD:DP:GQ:PL 1/1:4,10:17:6:61,6,0 chrIV 1525331 . C T 63.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=12;Dels=0.00;FS=10.792;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=-0.290;QD=5.26;ReadPosRankSum=-1.738;SB=-3.076e+00 GT:AD:DP:GQ:PL 0/1:1,11:12:15:93,0,15 chrIV 1525335 . C G 57.97 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=7.25;SB=-2.985e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:90,9,0 chrIV 1525481 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;DP=84;Dels=0.00;FS=41.986;HaplotypeScore=3.9649;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=32;MQRankSum=-2.837;QD=0.51;ReadPosRankSum=-3.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,14:84:73:73,0,747 chrIV 1525482 . G T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;DP=85;Dels=0.00;FS=41.986;HaplotypeScore=1.9825;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=33;MQRankSum=-2.589;QD=0.51;ReadPosRankSum=-3.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,15:85:73:73,0,721 chrIV 1525669 . G T 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=12.47;MQ0=96;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,36:120:99:192,0,212 chrIX 8353 . A T 103.26 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.17;MQ0=37;QD=2.40;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:21,22:43:15:136,15,0 chrIX 8369 . C A 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.30;MQ0=27;MQRankSum=2.054;QD=2.67;ReadPosRankSum=2.054;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:13,23:36:15:129,15,0 chrIX 8389 . G A 91.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.016;DP=38;Dels=0.00;FS=9.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.51;MQ0=25;MQRankSum=1.954;QD=2.40;ReadPosRankSum=3.016;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:12,26:38:15:124,15,0 chrIX 8405 . A T 98.26 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.03;MQ0=29;QD=1.72;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:15:131,15,0 chrIX 8411 . T C 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.911;DP=59;Dels=0.00;FS=29.588;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.96;MQ0=30;MQRankSum=2.574;QD=1.60;ReadPosRankSum=-0.382;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:34,25:59:15:127,15,0 chrIX 19966 . T C 716.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DP=272;Dels=0.00;FS=30.208;HaplotypeScore=15.8461;MLEAC=1;MLEAF=0.500;MQ=37.23;MQ0=13;MQRankSum=-7.255;QD=2.63;ReadPosRankSum=2.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,72:272:99:746,0,3277 chrIX 20039 . A C 2094 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.129;DP=170;Dels=0.00;FS=13.768;HaplotypeScore=12.1446;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=32;MQRankSum=-2.751;QD=12.32;ReadPosRankSum=4.098;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:6,164:170:99:2127,231,0 chrIX 20053 . A T 1295 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=138;Dels=0.00;FS=5.828;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=31;MQRankSum=1.693;QD=9.38;ReadPosRankSum=1.220;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,114:138:99:1328,150,0 chrIX 20083 . T C 672.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.654;DP=123;Dels=0.00;FS=115.786;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=36;MQRankSum=2.345;QD=5.46;ReadPosRankSum=-3.110;SB=-1.702e+01 GT:AD:DP:GQ:PL 0/1:37,85:123:29:702,0,29 chrIX 20104 . C T 954.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DP=136;Dels=0.00;FS=165.279;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=31;MQRankSum=2.729;QD=7.01;ReadPosRankSum=-0.325;SB=-1.802e+01 GT:AD:DP:GQ:PL 0/1:62,74:136:44:984,0,44 chrIX 20107 . G A 1483 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=31;QD=10.59;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:1516,162,0 chrIX 20161 . T A 1073.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;DP=239;Dels=0.00;FS=379.177;HaplotypeScore=9.7186;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=45;MQRankSum=-2.517;QD=4.49;ReadPosRankSum=0.334;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:109,130:239:99:1103,0,1579 chrIX 20167 . T C 1303.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.165;DP=249;Dels=0.00;FS=428.572;HaplotypeScore=14.3234;MLEAC=1;MLEAF=0.500;MQ=29.02;MQ0=48;MQRankSum=1.275;QD=5.23;ReadPosRankSum=1.288;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:140,104:249:99:1333,0,1221 chrIX 20196 . A C 993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DP=251;Dels=0.00;FS=395.882;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=34.15;MQ0=33;MQRankSum=-4.647;QD=3.96;ReadPosRankSum=-0.270;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:156,94:251:99:1023,0,2212 chrIX 20218 . C T 4015.01 filter AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=22;QD=17.77;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4015,441,0 chrIX 20287 . T C 1828 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.521;DP=114;Dels=0.00;FS=17.829;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=15;MQRankSum=3.241;QD=16.04;ReadPosRankSum=1.666;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:12,101:114:99:1861,182,0 chrIX 20299 . A G 1666 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=105;Dels=0.00;FS=3.832;HaplotypeScore=7.9040;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=16;MQRankSum=-0.338;QD=15.87;ReadPosRankSum=1.692;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:1699,186,0 chrIX 20325 . A G 2347 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=147;Dels=0.00;FS=9.564;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=21;MQRankSum=1.616;QD=15.97;ReadPosRankSum=2.944;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:2380,270,0 chrIX 20494 . A G 1949 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=14;MQRankSum=-1.379;QD=15.98;ReadPosRankSum=1.700;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1982,222,0 chrIX 20548 . C G 2676.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DP=249;Dels=0.00;FS=177.766;HaplotypeScore=29.9092;MLEAC=1;MLEAF=0.500;MQ=37.85;MQ0=7;MQRankSum=4.285;QD=10.75;ReadPosRankSum=1.651;SB=-1.324e+03 GT:AD:DP:GQ:PL 0/1:86,161:249:99:2706,0,1170 chrIX 20686 . T A 656.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=73;Dels=0.00;FS=16.376;HaplotypeScore=9.3000;MLEAC=1;MLEAF=0.500;MQ=32.84;MQ0=1;MQRankSum=2.422;QD=8.99;ReadPosRankSum=2.786;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:32,41:73:99:686,0,476 chrIX 20698 . G A 937 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=20.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:970,102,0 chrIX 20709 . C T 554.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.491;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=-1.055;QD=7.49;ReadPosRankSum=-0.033;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,33:74:99:584,0,518 chrIX 20713 . C G 1575 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=19.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1608,171,0 chrIX 20725 . T C 2019 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=17.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2052,231,0 chrIX 20738 . C T 1233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=3;MQRankSum=-1.391;QD=7.25;ReadPosRankSum=0.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,87:170:99:1263,0,1261 chrIX 20782 . T A,C 3678.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.65;MQ0=3;QD=15.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,126,110:236:99:3678,1742,1507,1937,0,1715 chrIX 20818 . C T 1005.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=23.5350;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=2;MQRankSum=-1.072;QD=5.95;ReadPosRankSum=-0.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,86:169:99:1035,0,928 chrIX 20821 . C T 2322 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=19.5369;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=14.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,154:160:99:2355,252,0 chrIX 20830 . T C 692.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.315;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7057;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=2;MQRankSum=0.786;QD=5.58;ReadPosRankSum=0.889;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,62:124:99:722,0,625 chrIX 20833 . C T 451.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.8170;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=-0.739;QD=3.99;ReadPosRankSum=-0.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,53:113:99:481,0,668 chrIX 20839 . C T 1274 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=13.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1307,138,0 chrIX 20845 . G A 941 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=11.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:974,108,0 chrIX 20848 . C T 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=0.371;QD=2.84;ReadPosRankSum=4.737;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,30:77:99:249,0,436 chrIX 20856 . T A 130.13 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=1;QD=5.66;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:18:163,18,0 chrIX 20866 . G C 83.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=1;QD=5.22;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:116,12,0 chrIX 20889 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=3;QD=2.97;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:55,6,0 chrIX 21289 . C T 557 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=7;QD=16.88;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:63:590,63,0 chrIX 21567 . T C 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DP=92;Dels=0.00;FS=10.323;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=40;MQRankSum=-1.569;QD=0.74;ReadPosRankSum=2.874;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,29:92:98:98,0,712 chrIX 21727 . T C 397.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;DP=59;Dels=0.00;FS=6.255;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=21;MQRankSum=-2.506;QD=6.73;ReadPosRankSum=-1.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,41:59:99:427,0,132 chrIX 21741 . A G 537 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=1;MQRankSum=1.208;QD=15.79;ReadPosRankSum=1.628;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:63:570,63,0 chrIX 21742 . A G 484 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=35;Dels=0.00;FS=15.051;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=2;MQRankSum=1.191;QD=13.83;ReadPosRankSum=-1.408;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:1,33:35:36:517,36,0 chrIX 21746 . A T 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=45;Dels=0.00;FS=5.099;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=2;MQRankSum=-1.879;QD=7.42;ReadPosRankSum=-0.661;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,30:45:99:364,0,172 chrIX 21769 . A G 541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=18;MQRankSum=1.282;QD=5.82;ReadPosRankSum=-0.569;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:49,43:93:99:571,0,525 chrIX 21867 . C T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=9.45;MQ0=116;MQRankSum=0.143;QD=0.39;ReadPosRankSum=-1.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,56:127:79:79,0,108 chrIX 22039 . C G 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=102;Dels=0.00;FS=4.201;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.76;MQ0=59;MQRankSum=0.086;QD=1.67;ReadPosRankSum=0.923;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:56,45:102:99:200,0,385 chrIX 22109 . T A 246.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;DP=76;Dels=0.00;FS=1.130;HaplotypeScore=25.0489;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=32;MQRankSum=-0.164;QD=3.24;ReadPosRankSum=0.258;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:37,39:76:99:276,0,280 chrIX 22414 . T C 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.663;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=3;MQRankSum=-0.350;QD=5.23;ReadPosRankSum=0.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,40:65:99:370,0,231 chrIX 22598 . C T 831 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=14;QD=17.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:93:864,93,0 chrIX 23353 . G T 438.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=42.24;MQ0=17;MQRankSum=-4.920;QD=2.13;ReadPosRankSum=-4.111;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:113,93:206:99:468,0,1719 chrIX 23566 . G T 5424.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.084;DP=388;Dels=0.00;FS=366.382;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=8;MQRankSum=7.414;QD=13.98;ReadPosRankSum=3.873;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:50,337:388:99:5424,478,0 chrIX 23584 . A G 1857.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=386;Dels=0.00;FS=193.782;HaplotypeScore=8.9023;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=21;MQRankSum=-0.471;QD=4.81;ReadPosRankSum=0.487;SB=-1.385e+03 GT:AD:DP:GQ:PL 0/1:161,224:386:99:1887,0,1294 chrIX 23647 . A G 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=21;MQRankSum=-3.607;QD=0.39;ReadPosRankSum=3.247;SB=-5.285e+01 GT:AD:DP:GQ:PL 1/1:5,87:92:9:68,9,0 chrIX 23650 . T C 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DP=76;Dels=0.00;FS=5.099;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.76;MQ0=20;MQRankSum=-1.732;QD=0.47;ReadPosRankSum=0.031;SB=-2.479e+01 GT:AD:DP:GQ:PL 1/1:1,74:76:9:68,9,0 chrIX 23776 . G A 37.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=43;Dels=0.00;FS=75.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=0.214;QD=0.86;ReadPosRankSum=-4.063;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:7,36:43:20:67,0,20 chrIX 23788 . A G 150.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.872;DP=64;Dels=0.00;FS=78.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=1.334;QD=2.35;ReadPosRankSum=-4.151;SB=-4.208e+00 GT:AD:DP:GQ:PL 0/1:7,57:64:2:179,0,2 chrIX 23803 . G A 320.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.104;DP=92;Dels=0.00;FS=74.240;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=1.458;QD=3.48;ReadPosRankSum=-1.325;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:7,85:92:18:353,18,0 chrIX 23806 . T A 436 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;MQRankSum=-1.732;QD=4.45;ReadPosRankSum=1.694;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,90:98:57:469,57,0 chrIX 23812 . G A 544 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=4.95;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:66:577,66,0 chrIX 23818 . G A 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=134;Dels=0.00;FS=54.846;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;MQRankSum=1.630;QD=5.88;ReadPosRankSum=1.537;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:7,123:134:78:821,78,0 chrIX 24157 . G T 6998.01 SnpCluster AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=23.80;SB=-3.955e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:6998,751,0 chrIX 24160 . A C 6673.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.370;QD=23.25;ReadPosRankSum=1.672;SB=-3.817e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:6673,732,0 chrIX 24163 . G A 6447.01 SnpCluster AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=23.36;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6447,694,0 chrIX 24196 . G T 154.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.721;DP=191;Dels=0.00;FS=8.249;HaplotypeScore=13.9774;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=-6.319;QD=0.81;ReadPosRankSum=-6.748;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:131,57:191:99:184,0,2461 chrIX 24199 . A C 255.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;DP=194;Dels=0.00;FS=2.619;HaplotypeScore=13.1887;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=-6.730;QD=1.31;ReadPosRankSum=-4.320;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:124,70:194:99:285,0,2185 chrIX 24202 . G A 443.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.076;DP=194;Dels=0.00;FS=2.525;HaplotypeScore=14.1298;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=-4.559;QD=2.28;ReadPosRankSum=-3.527;SB=-5.540e+02 GT:AD:DP:GQ:PL 0/1:110,84:194:99:473,0,1971 chrIX 24211 . G A 1050.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DP=187;Dels=0.00;FS=1.197;HaplotypeScore=23.7581;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=0;MQRankSum=-2.110;QD=5.62;ReadPosRankSum=4.583;SB=-9.670e+02 GT:AD:DP:GQ:PL 0/1:69,116:187:99:1080,0,1117 chrIX 24220 . G A 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;DP=192;Dels=0.00;FS=2.265;HaplotypeScore=15.0826;MLEAC=1;MLEAF=0.500;MQ=49.32;MQ0=0;MQRankSum=-1.305;QD=1.19;ReadPosRankSum=-8.322;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:148,42:192:99:259,0,1819 chrIX 24816 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=198;Dels=0.00;FS=11.014;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.226;QD=23.19;ReadPosRankSum=3.730;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:5,192:198:99:4591,490,0 chrIX 25066 . A G 6652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.820;DP=275;Dels=0.00;FS=9.107;HaplotypeScore=22.0671;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.688;QD=24.19;ReadPosRankSum=2.414;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:2,271:275:99:6652,697,0 chrIX 25228 . G A 7201.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.69;SB=-3.566e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:7201,778,0 chrIX 25278 . C A 6720.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=9.6106;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=23.25;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6720,721,0 chrIX 25331 . C A 1625 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=17.29;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1658,183,0 chrIX 25332 . T C 1601 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=17.59;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1634,180,0 chrIX 25334 . C T 1613 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=19.67;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1646,177,0 chrIX 25341 . C T 312.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.479;QD=8.43;ReadPosRankSum=4.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,24:37:76:342,0,76 chrIX 25342 . G A 286.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.566;QD=7.15;ReadPosRankSum=5.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,24:40:99:316,0,147 chrIX 25345 . T G 279.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.232;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.339;QD=6.98;ReadPosRankSum=5.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,24:40:99:309,0,162 chrIX 25349 . A G 174.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.339;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.235;QD=4.35;ReadPosRankSum=-5.315;SB=2.94 GT:AD:DP:GQ:PL 1/1:24,16:40:21:207,21,0 chrIX 25357 . G A 840 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=14.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:873,99,0 chrIX 25358 . C G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.689;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.21;MQ0=0;MQRankSum=-1.814;QD=1.18;ReadPosRankSum=4.789;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,16:60:99:101,0,630 chrIX 25359 . T G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.697;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.72;MQ0=0;MQRankSum=-0.779;QD=1.16;ReadPosRankSum=5.353;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,16:61:99:101,0,647 chrIX 25361 . C A 1031 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=15.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1064,117,0 chrIX 25362 . C A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.801;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=38.76;MQ0=0;MQRankSum=-1.530;QD=0.89;ReadPosRankSum=5.410;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,17:70:92:92,0,682 chrIX 25363 . A T 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DP=72;Dels=0.00;FS=3.312;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=38.80;MQ0=0;MQRankSum=-1.955;QD=1.19;ReadPosRankSum=4.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,19:72:99:116,0,702 chrIX 25376 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=13.68;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1812,198,0 chrIX 25392 . C A 616.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DP=175;Dels=0.00;FS=41.246;HaplotypeScore=4.1647;MLEAC=1;MLEAF=0.500;MQ=45.88;MQ0=1;MQRankSum=-4.989;QD=3.52;ReadPosRankSum=1.013;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:90,84:175:99:646,0,1312 chrIX 25393 . T A 801.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=177;Dels=0.00;FS=43.589;HaplotypeScore=4.1647;MLEAC=1;MLEAF=0.500;MQ=46.07;MQ0=1;MQRankSum=-4.661;QD=4.53;ReadPosRankSum=1.201;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:93,84:177:99:831,0,1281 chrIX 25467 . C T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.896;DP=113;Dels=0.00;FS=2.292;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=48.61;MQ0=1;MQRankSum=-0.346;QD=0.20;ReadPosRankSum=-4.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,15:113:53:53,0,1497 chrIX 25468 . T A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=1;MQRankSum=-0.141;QD=0.25;ReadPosRankSum=-5.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,17:108:57:57,0,1455 chrIX 25498 . T G 689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=51;Dels=0.00;FS=13.892;HaplotypeScore=13.1599;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=2;MQRankSum=1.167;QD=13.51;ReadPosRankSum=1.662;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:81:722,81,0 chrIX 25509 . C T 278.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.6411;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=2;MQRankSum=0.321;QD=7.72;ReadPosRankSum=2.438;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:11,25:36:99:308,0,165 chrIX 25510 . T A 285.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.6833;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=2;MQRankSum=0.927;QD=7.50;ReadPosRankSum=2.232;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:12,26:38:99:315,0,115 chrIX 25513 . A G 594 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.5984;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=2;QD=15.23;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:72:627,72,0 chrIX 25560 . C A 228.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;DP=51;Dels=0.00;FS=30.051;HaplotypeScore=5.7470;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=0;MQRankSum=-2.128;QD=4.47;ReadPosRankSum=-1.748;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:34,17:51:99:258,0,687 chrIX 25561 . T A 226.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DP=51;Dels=0.00;FS=25.751;HaplotypeScore=4.7892;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=0;MQRankSum=-1.979;QD=4.43;ReadPosRankSum=-2.101;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:35,16:51:99:256,0,689 chrIX 25593 . C T 520.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.685;DP=52;Dels=0.00;FS=131.674;HaplotypeScore=36.5561;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=1.069;QD=10.00;ReadPosRankSum=-0.479;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,29:52:99:550,0,213 chrIX 25594 . T A 520.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;DP=52;Dels=0.00;FS=66.324;HaplotypeScore=36.5561;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=-3.191;QD=10.00;ReadPosRankSum=-4.151;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:8,29:52:96:550,0,96 chrIX 25602 . C A 150.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.783;DP=52;Dels=0.00;FS=128.316;HaplotypeScore=33.3151;MLEAC=1;MLEAF=0.500;MQ=32.42;MQ0=0;MQRankSum=-0.580;QD=2.88;ReadPosRankSum=3.965;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:29,22:52:99:180,0,554 chrIX 25603 . T A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DP=54;Dels=0.00;FS=29.832;HaplotypeScore=33.2906;MLEAC=1;MLEAF=0.500;MQ=32.30;MQ0=0;MQRankSum=2.544;QD=0.85;ReadPosRankSum=4.273;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,8:54:76:76,0,738 chrIX 25635 . C T 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DP=28;Dels=0.00;FS=2.623;HaplotypeScore=3.9760;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=3;MQRankSum=3.058;QD=4.46;ReadPosRankSum=0.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,8:28:76:155,0,76 chrIX 25636 . T A 127.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=28;Dels=0.00;FS=16.532;HaplotypeScore=3.9760;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=3;MQRankSum=0.480;QD=4.54;ReadPosRankSum=-1.733;SB=-2.985e+00 GT:AD:DP:GQ:PL 0/1:5,8:28:29:157,0,29 chrIX 25666 . T G 215.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=4;MQRankSum=1.588;QD=7.17;ReadPosRankSum=2.261;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:2,28:30:27:248,27,0 chrIX 25677 . C T 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.8930;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=5;MQRankSum=-2.965;QD=1.36;ReadPosRankSum=-2.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,15:47:94:94,0,231 chrIX 25678 . T A 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.8930;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=5;MQRankSum=-3.017;QD=1.33;ReadPosRankSum=-2.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,15:49:95:95,0,231 chrIX 25681 . A G 391 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.8797;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=5;QD=7.24;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:48:424,48,0 chrIX 25728 . C A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.923;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=32.3469;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=2;MQRankSum=6.375;QD=1.42;ReadPosRankSum=-3.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,57:147:99:239,0,758 chrIX 25729 . T A 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.892;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=32.3469;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=2;MQRankSum=6.175;QD=1.31;ReadPosRankSum=-3.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,57:147:99:223,0,745 chrIX 25761 . C T 116.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;DP=171;Dels=0.00;FS=12.082;HaplotypeScore=32.5435;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=3.974;QD=0.68;ReadPosRankSum=-1.787;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:80,91:171:99:146,0,864 chrIX 25762 . T A 142.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.272;DP=172;Dels=0.00;FS=11.904;HaplotypeScore=32.5435;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=1;MQRankSum=3.157;QD=0.83;ReadPosRankSum=-1.697;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:75,91:172:99:172,0,727 chrIX 25765 . A G 1110 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=31.3907;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=6.49;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,168:171:99:1143,126,0 chrIX 25792 . T G 1075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;MQRankSum=-1.732;QD=7.85;ReadPosRankSum=1.631;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1108,126,0 chrIX 25813 . G T 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.8219;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=1.583;QD=8.89;ReadPosRankSum=1.695;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,92:101:99:931,99,0 chrIX 25832 . G A 747 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;MQRankSum=1.681;QD=10.99;ReadPosRankSum=-0.357;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:84:780,84,0 chrIX 25836 . C T 475 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;DP=28;Dels=0.00;FS=7.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=1.609;QD=16.96;ReadPosRankSum=1.609;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:57:508,57,0 chrIX 25838 . A T 484 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=17.29;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:517,57,0 chrIX 25842 . A C 452 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=28;Dels=0.00;FS=7.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=1.609;QD=16.14;ReadPosRankSum=1.609;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:57:485,57,0 chrIX 25846 . A C 455 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=16.85;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:488,57,0 chrIX 25890 . C A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=1.08;SB=-2.998e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:9:74,9,0 chrIX 25897 . T G 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=0.91;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:9:86,9,0 chrIX 25898 . G C 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=1.58;SB=-2.333e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:15:129,15,0 chrIX 25902 . T C 431 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=5.32;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:54:464,54,0 chrIX 25906 . A G 653 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=6.60;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:78:686,78,0 chrIX 26200 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=125;Dels=0.00;FS=9.244;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.427;QD=21.54;ReadPosRankSum=2.944;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2725,306,0 chrIX 26226 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=135;Dels=0.00;FS=3.457;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.065;QD=19.50;ReadPosRankSum=1.706;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2665,300,0 chrIX 26294 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=23.40;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3510,372,0 chrIX 26381 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=7.176;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.600;QD=22.78;ReadPosRankSum=2.391;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2903,324,0 chrIX 26436 . C G 2503 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=22.35;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2536,288,0 chrIX 26439 . T C 2422 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.03;FS=5.518;HaplotypeScore=4.5203;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;MQRankSum=0.881;QD=20.53;ReadPosRankSum=1.671;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2455,270,0 chrIX 26442 . C A 2446 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=119;Dels=0.00;FS=2.504;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;MQRankSum=-0.376;QD=20.55;ReadPosRankSum=2.530;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2479,273,0 chrIX 26499 . T A 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=5.006;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=0.304;QD=18.65;ReadPosRankSum=1.702;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2159,231,0 chrIX 26507 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=18.75;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2114,231,0 chrIX 26556 . C G 1162 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=15.29;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1195,132,0 chrIX 26564 . A G 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-1.732;QD=15.51;ReadPosRankSum=1.683;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1134,126,0 chrIX 26575 . A G 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;MQRankSum=-0.684;QD=13.23;ReadPosRankSum=1.687;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1052,117,0 chrIX 26591 . T A 915 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=11.44;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:948,108,0 chrIX 26620 . T C 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=-1.688;QD=10.49;ReadPosRankSum=1.688;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:851,99,0 chrIX 26639 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=10.73;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:945,105,0 chrIX 26667 . T C 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;MQRankSum=-1.162;QD=12.53;ReadPosRankSum=1.691;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1098,123,0 chrIX 26668 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=12.34;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1082,123,0 chrIX 26686 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=14.04;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1353,153,0 chrIX 26716 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=13.55;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1171,129,0 chrIX 26728 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=13.42;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1107,123,0 chrIX 26761 . T C 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;MQRankSum=-0.801;QD=14.39;ReadPosRankSum=1.681;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:997,114,0 chrIX 26783 . G C 897 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=13.00;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:930,111,0 chrIX 26788 . A G 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=6.603;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=-0.229;QD=11.47;ReadPosRankSum=2.309;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:836,102,0 chrIX 26801 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.4045;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=14.97;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1081,126,0 chrIX 26833 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;MQRankSum=0.304;QD=18.60;ReadPosRankSum=2.392;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1633,183,0 chrIX 26915 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=22.09;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1800,207,0 chrIX 26982 . C T 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.860;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;MQRankSum=0.462;QD=26.10;ReadPosRankSum=0.154;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2382,255,0 chrIX 27023 . A G 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=-1.687;QD=23.96;ReadPosRankSum=1.687;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1854,207,0 chrIX 27046 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;MQRankSum=0.000;QD=23.00;ReadPosRankSum=1.668;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1275,141,0 chrIX 27068 . G A 947 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=20.59;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:980,108,0 chrIX 27090 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=18.68;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:911,99,0 chrIX 27099 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=18.60;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1000,105,0 chrIX 27108 . A G 830 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=-1.732;QD=15.66;ReadPosRankSum=1.667;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:90:863,90,0 chrIX 27114 . A C 652 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.58;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:685,87,0 chrIX 27118 . C T 860 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=47.7214;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.46;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:93:893,93,0 chrIX 27129 . A G 897 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=11.07;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:930,102,0 chrIX 27132 . C G 904 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=11.30;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:937,102,0 chrIX 27219 . A G 745 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.899;DP=85;Dels=0.00;FS=2.700;HaplotypeScore=7.9637;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;MQRankSum=-2.247;QD=8.76;ReadPosRankSum=1.957;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:84:778,84,0 chrIX 27224 . G A 627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.962;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2584;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-1.518;QD=7.74;ReadPosRankSum=1.390;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:75:660,75,0 chrIX 27227 . A G 556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=5.326;HaplotypeScore=3.9502;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;MQRankSum=-0.808;QD=7.41;ReadPosRankSum=1.686;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:66:589,66,0 chrIX 27230 . A G 565 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1615;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=7.64;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:66:598,66,0 chrIX 27241 . G A 721 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;QD=9.24;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:81:754,81,0 chrIX 27378 . C A 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=21.57;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2600,282,0 chrIX 27399 . G T 2953 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=22.89;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2986,321,0 chrIX 27571 . G T 645 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4612;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=4.42;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:72:678,72,0 chrIX 27707 . G T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.97;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3974,420,0 chrIX 27757 . T A 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=21.33;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2848,321,0 chrIX 27924 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=21.24;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2369,252,0 chrIX 27959 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=57.3636;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=18.80;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1650,180,0 chrIX 27963 . C A 1733 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=70.8911;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;QD=18.24;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1766,192,0 chrIX 27994 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=17.26;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1880,207,0 chrIX 28029 . T G 2034 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=19.75;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2067,225,0 chrIX 28067 . A T 1823 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=2.610;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=-2.086;QD=21.96;ReadPosRankSum=2.916;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1856,204,0 chrIX 28070 . T C 1690 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=21.39;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1723,201,0 chrIX 28077 . A C 1578 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=21.92;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1611,180,0 chrIX 28102 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=18.53;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1293,147,0 chrIX 28108 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=19.90;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1366,153,0 chrIX 28161 . G A 1955 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=19.17;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1988,219,0 chrIX 28168 . G T 1968 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=18.22;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2001,225,0 chrIX 28169 . G A 1975 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=18.63;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2008,219,0 chrIX 28247 . T A 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;MQRankSum=-1.103;QD=15.86;ReadPosRankSum=2.945;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2047,213,0 chrIX 28273 . C G 1712 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=13.92;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1745,204,0 chrIX 28278 . A G 1485 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=14.721;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;MQRankSum=-0.830;QD=12.07;ReadPosRankSum=2.370;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1518,174,0 chrIX 28282 . T A 1336 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=12.15;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1369,156,0 chrIX 28283 . G A 1442 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=13.11;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1475,159,0 chrIX 28304 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=13.95;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1623,180,0 chrIX 28317 . G C 1455 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=13.73;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1488,159,0 chrIX 28371 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=22.81;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1995,216,0 chrIX 28411 . C A 2343 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=23.43;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2376,249,0 chrIX 28464 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;QD=22.17;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2516,264,0 chrIX 28874 . G C 2552 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=25.02;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2585,273,0 chrIX 28989 . G C 2415 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8021;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.42;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2448,264,0 chrIX 29044 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.072;QD=21.75;ReadPosRankSum=2.408;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2665,291,0 chrIX 29074 . T G 2556 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=18.26;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2589,276,0 chrIX 29079 . G T 2500 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.36;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2533,273,0 chrIX 29094 . A T 2523 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.15;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2556,282,0 chrIX 29124 . G T 2342 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.74;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2375,255,0 chrIX 29193 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=25.44;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3536,384,0 chrIX 29410 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.59;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3953,415,0 chrIX 29414 . G T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.9893;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.42;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3757,411,0 chrIX 29472 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.73;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3731,396,0 chrIX 29565 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.81;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4357,480,0 chrIX 29628 . G C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.23;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4167,442,0 chrIX 30915 . A T 2205 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.735;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.457;QD=21.62;ReadPosRankSum=3.720;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:5,97:102:99:2238,249,0 chrIX 30917 . T A 2162 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=9.253;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.336;QD=21.20;ReadPosRankSum=3.181;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:4,98:102:99:2195,252,0 chrIX 30924 . C T 2338 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5106;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.15;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2371,255,0 chrIX 31217 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.85;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3728,417,0 chrIX 31312 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3294,351,0 chrIX 31904 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.15;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2735,291,0 chrIX 31909 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.26;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2565,276,0 chrIX 31948 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.02;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2939,315,0 chrIX 32147 . G C 1993 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.43;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2026,231,0 chrIX 32156 . A G 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.602;QD=20.87;ReadPosRankSum=1.696;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2016,216,0 chrIX 32483 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.48;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2505,264,0 chrIX 32569 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.00;FS=2.590;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.078;QD=22.36;ReadPosRankSum=2.888;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2672,285,0 chrIX 32689 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.84;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3071,327,0 chrIX 32753 . T A 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.7823;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.282;QD=23.05;ReadPosRankSum=1.665;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3550,381,0 chrIX 32809 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=24.26;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4343,477,0 chrIX 32963 . C G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=17.2400;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=21.72;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3780,411,0 chrIX 33008 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=21.18;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3083,345,0 chrIX 33018 . C G 2524 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=19.72;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2557,285,0 chrIX 33032 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=19.71;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2359,264,0 chrIX 33147 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=20.23;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2117,234,0 chrIX 33198 . T G 532 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=14.00;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:565,69,0 chrIX 33211 . T C 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=9.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-0.833;QD=12.88;ReadPosRankSum=2.355;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:84:703,84,0 chrIX 33224 . T C 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.330;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;MQRankSum=0.179;QD=15.17;ReadPosRankSum=1.673;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:913,105,0 chrIX 33244 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=15.75;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1246,144,0 chrIX 33247 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=16.36;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1293,150,0 chrIX 33327 . A G 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;MQRankSum=-1.094;QD=20.34;ReadPosRankSum=1.641;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:93:806,93,0 chrIX 33340 . A G 548 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=20.30;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,25:27:69:581,69,0 chrIX 33343 . G T 533 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=22.21;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:566,66,0 chrIX 33348 . A T 397 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=17.26;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:430,51,0 chrIX 33364 . T G 165.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=5.740;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=1.042;QD=11.00;ReadPosRankSum=1.504;SB=-5.504e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:24:198,24,0 chrIX 33412 . A G 441 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=13.36;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:474,57,0 chrIX 33423 . T A 524 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=13.79;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:557,66,0 chrIX 33431 . T C 510 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=12.75;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:543,66,0 chrIX 33435 . C G 539 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=12.53;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:572,69,0 chrIX 33449 . C T 685 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=13.70;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:718,84,0 chrIX 33484 . A G 460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=4.674;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;MQRankSum=0.472;QD=10.45;ReadPosRankSum=1.654;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:57:493,57,0 chrIX 33485 . T C 458 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=10.65;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:491,57,0 chrIX 33503 . A T 446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=6.662;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=-1.529;QD=8.75;ReadPosRankSum=1.664;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:54:479,54,0 chrIX 33522 . G T 487 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=9.55;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:57:520,57,0 chrIX 33524 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=9.25;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:57:505,57,0 chrIX 33548 . T A 340 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.95;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:42:373,42,0 chrIX 33549 . G T 359 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=9.21;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:42:392,42,0 chrIX 33552 . T G 396 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.66;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:48:429,48,0 chrIX 33562 . G T 399 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;QD=9.28;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:48:432,48,0 chrIX 33581 . C A 557 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=12.38;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:66:590,66,0 chrIX 33599 . A T 873 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=17.12;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:906,105,0 chrIX 33645 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=19.10;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1752,189,0 chrIX 33649 . C G 1789 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=18.07;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1822,195,0 chrIX 33702 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.396;QD=19.74;ReadPosRankSum=1.707;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2816,306,0 chrIX 33799 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.76;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3083,324,0 chrIX 33811 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.25;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3071,330,0 chrIX 33870 . G T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.29;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4124,436,0 chrIX 34009 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=194;Dels=0.00;FS=2.976;HaplotypeScore=13.8132;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.439;QD=22.62;ReadPosRankSum=2.398;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4388,492,0 chrIX 34088 . T C 5483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.6935;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.644;QD=23.04;ReadPosRankSum=1.717;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5483,609,0 chrIX 34809 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.98;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2575,273,0 chrIX 34826 . G T 2446 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.04;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2479,270,0 chrIX 34975 . C A 2385 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.59;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2418,255,0 chrIX 35020 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.45;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2114,225,0 chrIX 35111 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.91;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2362,264,0 chrIX 35118 . C G 2506 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.58;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2539,276,0 chrIX 35226 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.56;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3251,339,0 chrIX 35247 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=129;Dels=0.00;FS=5.841;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.211;QD=21.34;ReadPosRankSum=2.852;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2786,303,0 chrIX 35312 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.59;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3056,330,0 chrIX 35674 . T C 2705 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;MQRankSum=1.374;QD=17.45;ReadPosRankSum=1.710;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2738,309,0 chrIX 35677 . G A 2737 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=17.66;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2770,300,0 chrIX 35680 . G A 2745 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=17.60;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2778,297,0 chrIX 35685 . G A 2637 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=16.69;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2670,291,0 chrIX 35691 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=152;Dels=0.00;FS=12.451;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;MQRankSum=-2.296;QD=14.23;ReadPosRankSum=3.275;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:2196,258,0 chrIX 35770 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=194;Dels=0.00;FS=3.027;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.770;QD=19.24;ReadPosRankSum=2.348;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3733,414,0 chrIX 35773 . T G 3799.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.48;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3799,420,0 chrIX 35804 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.56;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3755,396,0 chrIX 35871 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=22.03;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3965,435,0 chrIX 35894 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=4.016;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.513;QD=20.21;ReadPosRankSum=1.674;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3617,399,0 chrIX 35903 . G T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.45;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3865,420,0 chrIX 35910 . T G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-0.192;QD=20.26;ReadPosRankSum=1.695;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3829,420,0 chrIX 35983 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.75;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2774,294,0 chrIX 36103 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.51;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2740,300,0 chrIX 36218 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.17;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3373,357,0 chrIX 36317 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2400,252,0 chrIX 36359 . T G 2357 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2390,261,0 chrIX 36456 . C A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.55;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3577,378,0 chrIX 36580 . A C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.92;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3444,381,0 chrIX 36609 . C T 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.177;DP=148;Dels=0.00;FS=9.667;HaplotypeScore=22.5657;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.218;QD=20.56;ReadPosRankSum=-0.068;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3076,333,0 chrIX 36681 . C T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.81;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4384,492,0 chrIX 36687 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.31;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4619,507,0 chrIX 37634 . A C 5295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=249;Dels=0.00;FS=2.956;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.480;QD=21.27;ReadPosRankSum=2.390;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5295,591,0 chrIX 37646 . C G 4915.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.56;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:4915,549,0 chrIX 37723 . G C 4419.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=23.8235;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.56;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4419,492,0 chrIX 37771 . G A 5037.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.33;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5037,546,0 chrIX 37822 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.71;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4719,505,0 chrIX 37984 . T G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.381;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.882;QD=22.12;ReadPosRankSum=1.601;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3517,393,0 chrIX 38006 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.38;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3219,345,0 chrIX 38050 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.36;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3230,345,0 chrIX 38101 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.015;QD=23.57;ReadPosRankSum=1.684;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3418,375,0 chrIX 38251 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.50;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4159,462,0 chrIX 38467 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=224;Dels=0.00;FS=5.984;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.050;QD=24.01;ReadPosRankSum=2.942;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5378,565,0 chrIX 38608 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=7.345;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.857;QD=18.16;ReadPosRankSum=2.352;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:3687,393,0 chrIX 38609 . G C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.17;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3671,390,0 chrIX 38929 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3217,363,0 chrIX 39258 . C T 1508 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=23.94;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1541,165,0 chrIX 39286 . A C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=5.326;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.023;QD=19.75;ReadPosRankSum=1.686;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1514,165,0 chrIX 39289 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.97;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1475,165,0 chrIX 39328 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.55;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1554,165,0 chrIX 39386 . C T 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5711;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=-0.815;QD=13.13;ReadPosRankSum=0.764;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,67:71:99:965,108,0 chrIX 39393 . T G 1114 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=14.47;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1147,126,0 chrIX 39427 . A G 1103 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=14.32;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1136,126,0 chrIX 39470 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=16.69;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1652,177,0 chrIX 39475 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=17.77;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1757,186,0 chrIX 39962 . T A 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.084;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.501;QD=23.16;ReadPosRankSum=1.699;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2465,258,0 chrIX 40145 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.83;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2035,222,0 chrIX 40190 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=113;Dels=0.00;FS=10.190;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.252;QD=23.58;ReadPosRankSum=2.406;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2698,288,0 chrIX 40512 . G A 4908.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.79;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4908,517,0 chrIX 40928 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.09;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3854,411,0 chrIX 40953 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.38;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4071,427,0 chrIX 41223 . A G 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.321;QD=22.80;ReadPosRankSum=1.713;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4036,438,0 chrIX 41415 . A G 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8814;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.822;QD=20.66;ReadPosRankSum=1.656;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2864,309,0 chrIX 41439 . A T 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=145;Dels=0.00;FS=2.558;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.521;QD=20.26;ReadPosRankSum=2.952;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2971,321,0 chrIX 41532 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=136;Dels=0.00;FS=9.020;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.277;QD=23.32;ReadPosRankSum=3.394;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:3205,351,0 chrIX 41810 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0078;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.72;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4449,474,0 chrIX 41898 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=2.843;HaplotypeScore=8.9245;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.491;QD=22.23;ReadPosRankSum=2.414;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4712,505,0 chrIX 41905 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=211;Dels=0.00;FS=7.907;HaplotypeScore=12.6112;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.053;QD=20.28;ReadPosRankSum=2.391;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4279,477,0 chrIX 42365 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.857;QD=21.95;ReadPosRankSum=1.656;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2052,219,0 chrIX 42679 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=2.995;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.73;ReadPosRankSum=2.326;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2761,303,0 chrIX 42862 . A T 2667 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2700,291,0 chrIX 43318 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2066,225,0 chrIX 43493 . T C 2305 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.76;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2338,252,0 chrIX 43753 . C A 1982 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.09;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2015,216,0 chrIX 44230 . A T 2639 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.40;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2672,285,0 chrIX 44331 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1112;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=15.41;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2653,291,0 chrIX 44632 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.29;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3014,324,0 chrIX 44674 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.72;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2571,276,0 chrIX 44800 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7867;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.75;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2512,267,0 chrIX 44890 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=16.84;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1784,189,0 chrIX 44979 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.15;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2021,225,0 chrIX 45115 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2099,231,0 chrIX 45203 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.39;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2384,264,0 chrIX 45259 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.48;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2438,261,0 chrIX 45367 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.89;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1925,207,0 chrIX 45530 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.84;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2492,258,0 chrIX 45559 . A C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=3.570;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.438;QD=21.60;ReadPosRankSum=1.694;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:2042,228,0 chrIX 45691 . T G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.162;QD=22.32;ReadPosRankSum=1.682;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3135,336,0 chrIX 45705 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.0030;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.16;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3057,324,0 chrIX 45746 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.144;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.585;QD=20.73;ReadPosRankSum=1.709;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3122,339,0 chrIX 45805 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.03;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3306,348,0 chrIX 45859 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.01;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4252,448,0 chrIX 46057 . C G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.72;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3321,384,0 chrIX 46102 . C A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.44;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3485,369,0 chrIX 46174 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.054;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.548;QD=23.18;ReadPosRankSum=1.673;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2815,300,0 chrIX 46189 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.577;QD=21.47;ReadPosRankSum=1.705;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2738,303,0 chrIX 46211 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.33;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2960,324,0 chrIX 46556 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.60;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5095,529,0 chrIX 46692 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4292,459,0 chrIX 46811 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.765;QD=22.32;ReadPosRankSum=1.701;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2533,279,0 chrIX 47048 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.59;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2343,249,0 chrIX 47054 . G T 2420 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.62;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2453,264,0 chrIX 47493 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5707;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.90;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4602,504,0 chrIX 47766 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.82;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4492,472,0 chrIX 47916 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=158;Dels=0.00;FS=17.182;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.605;QD=21.19;ReadPosRankSum=2.879;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3348,378,0 chrIX 47931 . T A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.43;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3773,402,0 chrIX 48626 . G A 6626.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.77;SB=-3.691e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6626,715,0 chrIX 48693 . A G 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=250;Dels=0.00;FS=2.733;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.378;QD=19.50;ReadPosRankSum=2.391;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:4874,546,0 chrIX 48699 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.59;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:4643,516,0 chrIX 48780 . T C 6157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=269;Dels=0.00;FS=6.855;HaplotypeScore=11.8726;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.829;QD=22.89;ReadPosRankSum=2.404;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:2,266:269:99:6157,658,0 chrIX 48813 . A G 5879.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.6335;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.05;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:5879,648,0 chrIX 48875 . T A 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=9.539;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.656;QD=18.40;ReadPosRankSum=2.820;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3386,354,0 chrIX 48879 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.98;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3284,351,0 chrIX 49143 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.90;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3165,339,0 chrIX 49550 . T C 3140 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=30.6806;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.13;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3173,354,0 chrIX 49641 . T G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=2.918;HaplotypeScore=18.6406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.193;QD=19.45;ReadPosRankSum=2.404;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3242,366,0 chrIX 50388 . T A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3557,384,0 chrIX 51147 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.23;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3828,423,0 chrIX 51323 . T C 62.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DP=101;Dels=0.00;FS=1.660;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=54.63;MQ0=0;MQRankSum=-1.490;QD=0.62;ReadPosRankSum=-4.433;SB=-3.164e+01 GT:AD:DP:GQ:PL 0/1:93,8:101:5:92,0,5 chrIX 51326 . T C 68.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.335;DP=103;Dels=0.00;FS=2.385;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=2.325;QD=0.67;ReadPosRankSum=3.369;SB=-5.588e+02 GT:AD:DP:GQ:PL 0/1:4,97:103:4:98,0,4 chrIX 51375 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.83;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1692,180,0 chrIX 51640 . C A 168.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:21:201,21,0 chrIX 51702 . C T 703 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:78:736,78,0 chrIX 51730 . C T 1168 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1201,126,0 chrIX 51756 . G C 1842 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1875,213,0 chrIX 51897 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.65;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2892,306,0 chrIX 52260 . G A 5776.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.4843;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.97;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5776,636,0 chrIX 52905 . C T 5724.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.02;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:5724,616,0 chrIX 53010 . C G 5217.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.54;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5217,588,0 chrIX 53091 . G C 4912.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.05;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,240:245:99:4912,555,0 chrIX 53103 . A G 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;DP=233;Dels=0.01;FS=5.979;HaplotypeScore=9.7106;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.991;QD=20.06;ReadPosRankSum=2.935;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4673,504,0 chrIX 53238 . T C 5730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.3825;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.901;QD=22.83;ReadPosRankSum=1.704;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5730,636,0 chrIX 53484 . G C 5098.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.81;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5098,558,0 chrIX 53815 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3894;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.39;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3241,339,0 chrIX 53832 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.90;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3252,351,0 chrIX 53965 . G C 6114.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=25.2880;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,252:257:99:6114,658,0 chrIX 54404 . G C 7374.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=24.7859;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.62;SB=-4.975e+03 GT:AD:DP:GQ:PL 1/1:0,391:396:99:7374,828,0 chrIX 54480 . T C 7438.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=43.1340;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.47;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:0,378:382:99:7438,796,0 chrIX 54551 . G A 7248.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=27.7989;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.58;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:7248,763,0 chrIX 54965 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.73;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3260,366,0 chrIX 55071 . C A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.10;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3447,369,0 chrIX 55251 . G A 7992.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=19.2485;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.07;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,330:332:99:7992,859,0 chrIX 55428 . G T 10606.01 filter AC=2;AF=1.00;AN=2;DP=496;Dels=0.00;FS=0.000;HaplotypeScore=25.3105;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.38;SB=-6.598e+03 GT:AD:DP:GQ:PL 1/1:0,495:496:99:10606,1138,0 chrIX 55461 . A T 10685.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=483;Dels=0.00;FS=6.048;HaplotypeScore=27.7591;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.064;QD=22.12;ReadPosRankSum=2.419;SB=-6.362e+03 GT:AD:DP:GQ:PL 1/1:2,481:483:99:10685,1147,0 chrIX 55663 . G A 7450.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.82;SB=-4.806e+03 GT:AD:DP:GQ:PL 1/1:0,418:418:99:7450,787,0 chrIX 55666 . G A 7011.01 filter AC=2;AF=1.00;AN=2;DP=421;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.65;SB=-4.594e+03 GT:AD:DP:GQ:PL 1/1:0,418:421:99:7011,771,0 chrIX 55678 . A C 7016.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=13.4494;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.650;QD=16.78;ReadPosRankSum=1.690;SB=-4.901e+03 GT:AD:DP:GQ:PL 1/1:1,415:418:99:7016,774,0 chrIX 55716 . T C 6089.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=381;Dels=0.00;FS=7.261;HaplotypeScore=24.9481;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.152;QD=15.98;ReadPosRankSum=2.366;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:2,379:381:99:6089,684,0 chrIX 55756 . C T 7784.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.50;SB=-3.878e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:7784,847,0 chrIX 55837 . T C 6743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=314;Dels=0.00;FS=4.287;HaplotypeScore=17.0227;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.169;QD=21.47;ReadPosRankSum=1.655;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:1,313:314:99:6743,736,0 chrIX 56028 . T A 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.672;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.551;QD=22.87;ReadPosRankSum=1.696;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4369,492,0 chrIX 56341 . A T 2491 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.92;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2524,285,0 chrIX 57000 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.01;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4786,508,0 chrIX 57063 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.43;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3819,403,0 chrIX 57096 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.48;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2968,312,0 chrIX 57153 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.45;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2525,282,0 chrIX 57578 . A T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5468;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.09;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4265,442,0 chrIX 57683 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.88;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5051,567,0 chrIX 57890 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.18;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4867,534,0 chrIX 58130 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.55;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4240,451,0 chrIX 58256 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6200;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.56;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3675,414,0 chrIX 58382 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.41;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2902,321,0 chrIX 58436 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3833;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.90;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2996,324,0 chrIX 58508 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.781;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.659;QD=21.45;ReadPosRankSum=2.350;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2157,243,0 chrIX 58511 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.03;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2236,240,0 chrIX 59333 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.26;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2860,312,0 chrIX 59546 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.805;QD=22.92;ReadPosRankSum=1.705;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2944,318,0 chrIX 59552 . T G 2646 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.34;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2679,297,0 chrIX 59639 . T A 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.906;QD=22.00;ReadPosRankSum=1.652;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2893,309,0 chrIX 59981 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.77;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2275,258,0 chrIX 60280 . T C 4184.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.7408;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.86;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4184,450,0 chrIX 60465 . C G 4785.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.29;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4785,525,0 chrIX 60774 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.48;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4510,478,0 chrIX 60844 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.680;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.652;QD=20.55;ReadPosRankSum=1.710;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3197,360,0 chrIX 60879 . A C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4209;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3288,354,0 chrIX 61274 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3067,327,0 chrIX 61323 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2436,261,0 chrIX 61466 . C A 2853 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2886,309,0 chrIX 61608 . T A 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2884,333,0 chrIX 62005 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.42;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3468,363,0 chrIX 62057 . A C 2955 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.05;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2988,333,0 chrIX 62438 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.76;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3641,393,0 chrIX 62504 . C G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=163;Dels=0.00;FS=3.780;HaplotypeScore=8.0824;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.602;QD=22.47;ReadPosRankSum=1.602;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3663,390,0 chrIX 62514 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.097;DP=166;Dels=0.00;FS=14.367;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.567;QD=20.70;ReadPosRankSum=4.088;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:6,160:166:99:3436,378,0 chrIX 62815 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.67;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2937,315,0 chrIX 63495 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.61;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2795,306,0 chrIX 63655 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.441;QD=23.73;ReadPosRankSum=1.674;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2857,315,0 chrIX 63838 . T C 2661 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2694,294,0 chrIX 64057 . C A 2361 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2394,264,0 chrIX 64132 . G C 2327 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2360,261,0 chrIX 64231 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2383,252,0 chrIX 64310 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2136,228,0 chrIX 64645 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.17;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2049,219,0 chrIX 64705 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.848;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.972;QD=23.64;ReadPosRankSum=1.702;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2728,297,0 chrIX 64944 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3726,402,0 chrIX 65281 . T A 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.095;QD=23.63;ReadPosRankSum=1.656;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3247,345,0 chrIX 65341 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.83;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3178,354,0 chrIX 65368 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.52;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2983,318,0 chrIX 65518 . C A 3050 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.28;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3083,330,0 chrIX 65551 . C G 2999 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.89;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3032,339,0 chrIX 65614 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.11;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2637,291,0 chrIX 65755 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.22;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2581,276,0 chrIX 65758 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.21;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2559,276,0 chrIX 66001 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.83;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2156,237,0 chrIX 66115 . T A 1936 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.17;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1969,213,0 chrIX 66117 . T C 1965 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.26;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1998,225,0 chrIX 66286 . T G 2036 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.67;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2069,225,0 chrIX 66328 . T A 2284 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.35;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2317,255,0 chrIX 66373 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=129;Dels=0.00;FS=6.407;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.242;QD=21.53;ReadPosRankSum=2.392;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2811,312,0 chrIX 66487 . A T 2425 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.04;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2458,267,0 chrIX 66488 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=8.508;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.168;QD=19.60;ReadPosRankSum=2.408;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2365,258,0 chrIX 66511 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.78;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2568,285,0 chrIX 66647 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.84;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3695,390,0 chrIX 67321 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.01;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1966,213,0 chrIX 67392 . T C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.063;QD=17.83;ReadPosRankSum=1.690;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1513,171,0 chrIX 67395 . A T 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.247;QD=19.10;ReadPosRankSum=1.691;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1637,177,0 chrIX 67426 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.25;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1727,183,0 chrIX 67439 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.64;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1655,183,0 chrIX 67951 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.81;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3152,336,0 chrIX 68186 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.46;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2093,222,0 chrIX 68312 . G T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.01;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3250,339,0 chrIX 68384 . A T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.9591;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.22;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4064,430,0 chrIX 68461 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.388;QD=22.04;ReadPosRankSum=1.663;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3350,378,0 chrIX 68597 . A T 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.748;QD=21.77;ReadPosRankSum=1.712;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3831,408,0 chrIX 68857 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2879,309,0 chrIX 69624 . C A 422 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=16.23;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:48:455,48,0 chrIX 69651 . A G 244 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=12.20;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:277,30,0 chrIX 69658 . T C 344 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=13.76;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:42:377,42,0 chrIX 69770 . T G 1576 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.59;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1609,189,0 chrIX 69789 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.61;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2000,225,0 chrIX 69950 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.636;HaplotypeScore=9.8095;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.690;QD=24.76;ReadPosRankSum=1.711;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4061,453,0 chrIX 70241 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=2.944;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.569;QD=24.27;ReadPosRankSum=2.416;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3592,399,0 chrIX 70523 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.537;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.792;QD=18.43;ReadPosRankSum=1.707;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2631,291,0 chrIX 70529 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.77;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2503,279,0 chrIX 70598 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.64;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3917,420,0 chrIX 71330 . T A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4602,507,0 chrIX 71768 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3507,381,0 chrIX 72464 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.48;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4627,496,0 chrIX 73880 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2572,273,0 chrIX 74340 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.102;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=24.80;ReadPosRankSum=1.636;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2711,291,0 chrIX 74541 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3019,330,0 chrIX 75045 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.409;QD=23.62;ReadPosRankSum=1.709;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3543,387,0 chrIX 75152 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.04;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3906,411,0 chrIX 75309 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.51;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3333,351,0 chrIX 75437 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.6008;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4457,472,0 chrIX 75750 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=21.9655;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.03;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3911,417,0 chrIX 75847 . T C 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=6.395;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.224;QD=16.81;ReadPosRankSum=1.700;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1882,198,0 chrIX 75941 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8740;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2090,222,0 chrIX 76028 . G T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;DP=77;Dels=0.03;FS=30.777;HaplotypeScore=10.1839;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-0.593;QD=1.10;ReadPosRankSum=-2.903;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,23:75:99:115,0,343 chrIX 76283 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.12;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4623,504,0 chrIX 76340 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=168;Dels=0.00;FS=6.098;HaplotypeScore=16.7407;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.139;QD=22.98;ReadPosRankSum=2.921;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3860,395,0 chrIX 76381 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.94;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3449,384,0 chrIX 76394 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.86;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3900,420,0 chrIX 76900 . C T 5520.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.2187;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5520,583,0 chrIX 77020 . C T 5260.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.1932;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.12;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5260,579,0 chrIX 77331 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3404,352,0 chrIX 77497 . C A 2792 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.7698;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.07;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2825,300,0 chrIX 77546 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=124;Dels=0.00;FS=2.580;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.625;QD=23.48;ReadPosRankSum=2.892;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:3,118:124:99:2945,318,0 chrIX 77594 . T A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3303,345,0 chrIX 77663 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.54;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3755,391,0 chrIX 77692 . G T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.45;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3776,399,0 chrIX 77750 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.7877;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.00;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3358,351,0 chrIX 77935 . A T 2679 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.30;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2712,285,0 chrIX 78088 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.798;DP=168;Dels=0.00;FS=33.556;HaplotypeScore=14.8546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.217;QD=23.70;ReadPosRankSum=3.732;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:5,162:168:99:3981,456,0 chrIX 78946 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1832,201,0 chrIX 79255 . C G 2139 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2172,237,0 chrIX 79292 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.630;QD=23.49;ReadPosRankSum=1.638;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2640,288,0 chrIX 79502 . A G 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.320;QD=21.31;ReadPosRankSum=1.691;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1823,207,0 chrIX 79550 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.23;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1850,198,0 chrIX 79625 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=72;Dels=0.00;FS=6.186;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.615;QD=21.75;ReadPosRankSum=2.901;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:99:1599,174,0 chrIX 79627 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.59;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1684,180,0 chrIX 79786 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.25;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2191,240,0 chrIX 79822 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.64;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2152,228,0 chrIX 79996 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.669;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.148;QD=23.33;ReadPosRankSum=2.351;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1783,192,0 chrIX 80181 . C T 508 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:57:541,57,0 chrIX 81110 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4159,436,0 chrIX 81257 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.10;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3626,387,0 chrIX 81307 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.98;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3247,351,0 chrIX 81413 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.35;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4081,447,0 chrIX 81629 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.879;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.010;QD=22.56;ReadPosRankSum=1.671;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3858,420,0 chrIX 82016 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2734,291,0 chrIX 82610 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.78;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3690,393,0 chrIX 82619 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=19.95;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3205,351,0 chrIX 82622 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.11;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3109,333,0 chrIX 82673 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=182;Dels=0.00;FS=5.829;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.033;QD=20.20;ReadPosRankSum=2.906;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3676,411,0 chrIX 82694 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.9282;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.66;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4223,465,0 chrIX 82733 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.3187;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.38;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,194:199:99:4453,483,0 chrIX 82899 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.6472;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.00;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4359,486,0 chrIX 83067 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=8.044;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.350;QD=22.40;ReadPosRankSum=2.422;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4054,432,0 chrIX 83104 . A C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.945;QD=22.02;ReadPosRankSum=1.642;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3413,372,0 chrIX 83252 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.94;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3687,402,0 chrIX 83517 . C G 4979.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4979,555,0 chrIX 83571 . T C 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=217;Dels=0.00;FS=6.545;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.325;QD=23.16;ReadPosRankSum=2.427;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:5026,561,0 chrIX 83754 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3991,438,0 chrIX 84138 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=183;Dels=0.00;FS=2.567;HaplotypeScore=12.7143;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.122;QD=23.01;ReadPosRankSum=2.928;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:3,179:183:99:4210,465,0 chrIX 85680 . C T 5157.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.66;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5157,550,0 chrIX 85758 . G A 5697.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5697,621,0 chrIX 86076 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3471,372,0 chrIX 86463 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1830;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.33;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3920,420,0 chrIX 86586 . T G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2178;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.59;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3347,378,0 chrIX 86636 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.419;QD=22.28;ReadPosRankSum=1.710;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3454,369,0 chrIX 86713 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.77;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3735,420,0 chrIX 86925 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=3.347;HaplotypeScore=13.6200;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.370;QD=23.86;ReadPosRankSum=1.698;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4843,543,0 chrIX 87954 . C A 1145 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.09;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1178,126,0 chrIX 87957 . T C 1153 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.274;QD=19.88;ReadPosRankSum=1.672;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1186,126,0 chrIX 87961 . C T 1064 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=19.00;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1097,117,0 chrIX 88444 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.76;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3167,333,0 chrIX 88448 . T C 3040 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.87;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3073,330,0 chrIX 90515 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.40;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3293,348,0 chrIX 90546 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.19;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4258,456,0 chrIX 90617 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=158;Dels=0.00;FS=5.191;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.476;QD=23.20;ReadPosRankSum=3.403;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3666,402,0 chrIX 90986 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.293;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.182;QD=23.86;ReadPosRankSum=1.659;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3412,363,0 chrIX 91112 . G C 2756 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=22.59;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2789,312,0 chrIX 91116 . T G 2625 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.87;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2658,291,0 chrIX 91130 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.18;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3000,321,0 chrIX 91187 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.412;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.049;QD=21.01;ReadPosRankSum=1.685;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3121,351,0 chrIX 91232 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.251;QD=21.69;ReadPosRankSum=1.708;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3222,351,0 chrIX 91277 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0604;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.36;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2895,309,0 chrIX 91316 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4998;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.07;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2894,309,0 chrIX 91343 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.03;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2430,267,0 chrIX 91352 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.56;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2556,282,0 chrIX 91579 . C A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.69;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4692,499,0 chrIX 91661 . C T 5893.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.87;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5893,628,0 chrIX 91709 . A T 4891.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=219;Dels=0.00;FS=3.234;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-1.068;QD=22.33;ReadPosRankSum=1.685;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4891,523,0 chrIX 91712 . T C 4582.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=225;Dels=0.00;FS=3.017;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.301;QD=20.36;ReadPosRankSum=2.351;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4582,513,0 chrIX 91718 . A G 4339.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=223;Dels=0.00;FS=6.443;HaplotypeScore=8.6328;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.901;QD=19.46;ReadPosRankSum=2.372;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4339,474,0 chrIX 91834 . T A 5852.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.3126;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.28;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5852,619,0 chrIX 91967 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=9.349;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.159;QD=22.25;ReadPosRankSum=2.339;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3983,429,0 chrIX 91970 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4667;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.26;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3728,408,0 chrIX 92024 . T G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=10.3393;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3604,408,0 chrIX 92242 . C A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3673;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.54;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3554,378,0 chrIX 92420 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=3.515;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.401;QD=23.16;ReadPosRankSum=1.711;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3798,411,0 chrIX 92521 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=136;Dels=0.00;FS=6.107;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.370;QD=24.07;ReadPosRankSum=2.860;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3274,354,0 chrIX 92579 . A T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.42;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3663,396,0 chrIX 92809 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.0273;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.500;QD=22.87;ReadPosRankSum=1.662;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3407,363,0 chrIX 92857 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.16;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3069,339,0 chrIX 92947 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=22.66;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1687,177,0 chrIX 92948 . A T 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=2.835;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-1.605;QD=22.22;ReadPosRankSum=2.382;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1655,180,0 chrIX 92997 . G A 1256 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=14.95;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1289,144,0 chrIX 92998 . A C 1317 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=15.14;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1350,147,0 chrIX 92999 . A T 1351 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=15.18;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1384,153,0 chrIX 93013 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=14.96;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1499,159,0 chrIX 93053 . C A 1477 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=15.88;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1510,165,0 chrIX 93433 . C T 5552.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5552,592,0 chrIX 93577 . T C 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=235;Dels=0.00;FS=5.561;HaplotypeScore=15.0703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.900;QD=22.43;ReadPosRankSum=2.944;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:3,229:235:99:5271,582,0 chrIX 94251 . T G 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.661;QD=22.10;ReadPosRankSum=1.716;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4883,534,0 chrIX 94563 . T C 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=241;Dels=0.00;FS=8.658;HaplotypeScore=21.4809;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.113;QD=23.15;ReadPosRankSum=3.424;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:4,235:241:99:5580,606,0 chrIX 94863 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.75;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1870,207,0 chrIX 94886 . T C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=4.058;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.082;QD=20.30;ReadPosRankSum=1.691;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1738,189,0 chrIX 94907 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.67;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1528,177,0 chrIX 94908 . T A 1517 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.96;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1550,177,0 chrIX 95341 . C G 4339.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.8618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4339,492,0 chrIX 95590 . C T 7571.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=12.6213;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.73;SB=-4.118e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:7571,808,0 chrIX 97661 . A T 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=180;Dels=0.00;FS=6.079;HaplotypeScore=21.5320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.313;QD=21.37;ReadPosRankSum=2.928;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3846,435,0 chrIX 97730 . A G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.696;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.051;QD=24.11;ReadPosRankSum=1.654;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4315,480,0 chrIX 98050 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3822;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.85;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3577,381,0 chrIX 98109 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.48;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3710,390,0 chrIX 98144 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.35;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3050,336,0 chrIX 98294 . C A 2153 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.40;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2186,234,0 chrIX 98366 . A G 1864 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.67;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1897,210,0 chrIX 98414 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.48;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1322,147,0 chrIX 98623 . A G 1236 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=12.74;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1269,144,0 chrIX 98626 . G A 1071 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=10.93;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1104,123,0 chrIX 98632 . A G 831 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=9.13;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:864,102,0 chrIX 98639 . G C 616 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;QD=7.70;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:78:649,78,0 chrIX 98640 . A T 603 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=7.63;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:636,75,0 chrIX 98641 . A G 553 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=6.83;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:72:586,72,0 chrIX 98932 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.59;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3150,342,0 chrIX 99321 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.42;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3124,348,0 chrIX 99686 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2718,309,0 chrIX 100355 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.027;QD=23.05;ReadPosRankSum=1.705;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3053,321,0 chrIX 100415 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=4.206;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.289;QD=22.37;ReadPosRankSum=1.668;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2471,276,0 chrIX 100423 . T C 2556 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=22.03;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2589,276,0 chrIX 100450 . T C 2443 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.09;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2476,264,0 chrIX 100465 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.26;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2352,255,0 chrIX 100595 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.552;QD=22.13;ReadPosRankSum=1.694;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2047,228,0 chrIX 101006 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.544;QD=20.60;ReadPosRankSum=1.712;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3544,375,0 chrIX 101012 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=20.22;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3397,363,0 chrIX 101027 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.42;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2888,315,0 chrIX 101030 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.18;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2669,294,0 chrIX 101270 . A T 2899 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=20.27;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2932,309,0 chrIX 101294 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=20.31;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3222,354,0 chrIX 101315 . C A 3070 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.85;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3103,330,0 chrIX 101321 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=2.923;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=0.021;QD=16.80;ReadPosRankSum=2.407;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:2956,327,0 chrIX 101388 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.55;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3655,384,0 chrIX 101395 . T G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.085;QD=20.80;ReadPosRankSum=2.423;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3889,411,0 chrIX 101559 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=221;Dels=0.00;FS=9.896;HaplotypeScore=21.7818;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.812;QD=17.05;ReadPosRankSum=2.876;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:3,217:221:99:3767,426,0 chrIX 101723 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.9629;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.99;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4392,474,0 chrIX 101771 . A C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=3.319;HaplotypeScore=19.4068;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-0.051;QD=21.72;ReadPosRankSum=1.664;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4474,504,0 chrIX 101828 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.1741;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.09;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4336,460,0 chrIX 101954 . G A 4620.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4620,496,0 chrIX 102011 . T C 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=3.030;HaplotypeScore=15.7682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.765;QD=22.64;ReadPosRankSum=2.398;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4325,468,0 chrIX 102310 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.33;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3327,366,0 chrIX 102495 . A C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=0.272;QD=19.38;ReadPosRankSum=1.675;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2378,264,0 chrIX 102496 . T A 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.739;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.324;QD=19.91;ReadPosRankSum=1.619;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2482,264,0 chrIX 102597 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=21.11;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2440,261,0 chrIX 102974 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.26;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3105,330,0 chrIX 103157 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.64;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3212,345,0 chrIX 103273 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8767;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.38;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2934,315,0 chrIX 103303 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.11;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2346,258,0 chrIX 103318 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.830;DP=120;Dels=0.00;FS=2.958;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.755;QD=18.23;ReadPosRankSum=2.408;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2221,230,0 chrIX 103339 . T G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.300;QD=18.68;ReadPosRankSum=1.699;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,103:107:99:2032,225,0 chrIX 103474 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.4560;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.21;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2790,315,0 chrIX 103838 . A T 3063 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3096,327,0 chrIX 103927 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.85;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3744,408,0 chrIX 103994 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.77;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2469,270,0 chrIX 104128 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.36;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1806,195,0 chrIX 104728 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2220,246,0 chrIX 104822 . G T 1911 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.70;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1944,210,0 chrIX 104826 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.22;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2015,219,0 chrIX 104962 . T G 2939 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.51;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2972,333,0 chrIX 105090 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=138;Dels=0.00;FS=3.034;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.461;QD=24.17;ReadPosRankSum=2.413;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3335,354,0 chrIX 105352 . T C 403.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=7.3497;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=2.511;QD=13.00;ReadPosRankSum=-3.377;SB=-3.006e+01 GT:AD:DP:GQ:PL 0/1:5,24:31:16:433,0,16 chrIX 105355 . T C 353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=27;Dels=0.00;FS=3.385;HaplotypeScore=4.9402;MLEAC=1;MLEAF=0.500;MQ=50.78;MQ0=0;MQRankSum=2.462;QD=13.07;ReadPosRankSum=-2.351;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:7,20:27:70:383,0,70 chrIX 105420 . A G 110.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=12.25;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:143,15,0 chrIX 106629 . G A 6407.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.94;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6407,705,0 chrIX 106806 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.374;QD=20.00;ReadPosRankSum=2.423;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3700,411,0 chrIX 108933 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4085,433,0 chrIX 110073 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.577;QD=22.96;ReadPosRankSum=1.661;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3375,363,0 chrIX 110559 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2756,306,0 chrIX 111631 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3400,355,0 chrIX 112854 . T A 4886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=230;Dels=0.00;FS=2.304;HaplotypeScore=19.2405;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.271;QD=21.24;ReadPosRankSum=0.786;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4886,549,0 chrIX 113159 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.44;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4031,429,0 chrIX 113517 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.40;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4142,441,0 chrIX 113518 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.343;QD=23.63;ReadPosRankSum=1.086;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4207,442,0 chrIX 113753 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=26.18;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4136,435,0 chrIX 113799 . C A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.67;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4161,439,0 chrIX 113838 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3601,396,0 chrIX 114177 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.86;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3111,330,0 chrIX 114240 . G T 2750 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.2266;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.36;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2783,297,0 chrIX 114270 . T C 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=3.054;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.167;QD=23.12;ReadPosRankSum=2.398;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2276,252,0 chrIX 114691 . A T 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=2.892;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.010;QD=23.50;ReadPosRankSum=2.411;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3041,324,0 chrIX 114791 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3162,339,0 chrIX 115136 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.46;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3164,339,0 chrIX 115941 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2333,249,0 chrIX 116694 . C A 3103 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0245;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.01;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3136,333,0 chrIX 117012 . T A 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=112;Dels=0.00;FS=9.881;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.640;QD=23.69;ReadPosRankSum=2.919;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2686,279,0 chrIX 117121 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3388,369,0 chrIX 117336 . A T 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7609;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.970;QD=21.21;ReadPosRankSum=1.640;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3214,342,0 chrIX 117411 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.581;DP=121;Dels=0.00;FS=8.126;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.527;QD=16.90;ReadPosRankSum=-0.362;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2078,234,0 chrIX 117413 . T G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.033;DP=120;Dels=0.00;FS=8.052;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.636;QD=16.49;ReadPosRankSum=-0.386;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2012,222,0 chrIX 117456 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.3704;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.66;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2942,315,0 chrIX 117852 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3327,378,0 chrIX 118750 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3660,393,0 chrIX 119182 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3438,366,0 chrIX 119687 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2615,279,0 chrIX 120214 . T A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0822;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.37;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3475,375,0 chrIX 121004 . C G 3169 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3202,357,0 chrIX 121269 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.78;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4281,459,0 chrIX 121460 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.8903;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.767;QD=23.54;ReadPosRankSum=1.694;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4308,471,0 chrIX 121652 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8499;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2949,324,0 chrIX 122282 . G T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.59;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3378,357,0 chrIX 122620 . A T 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.751;QD=23.53;ReadPosRankSum=1.703;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2857,309,0 chrIX 122940 . A T 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=160;Dels=0.00;FS=6.969;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=24.83;ReadPosRankSum=2.388;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3973,423,0 chrIX 124830 . A G 5234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.717;QD=23.26;ReadPosRankSum=1.686;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5234,567,0 chrIX 125455 . C G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.22;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3318,360,0 chrIX 126263 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.976;QD=24.22;ReadPosRankSum=1.711;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:4044,441,0 chrIX 126566 . T C 6430.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=6.2652;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.12;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6430,694,0 chrIX 127636 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.26;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2605,279,0 chrIX 127637 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.99;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2489,276,0 chrIX 127749 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.68;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3382,369,0 chrIX 127774 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.07;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3437,366,0 chrIX 127868 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=159;Dels=0.00;FS=3.214;HaplotypeScore=8.9502;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.532;QD=20.89;ReadPosRankSum=0.577;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,152:159:99:3322,366,0 chrIX 129784 . A G 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.192;QD=22.21;ReadPosRankSum=1.705;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2831,309,0 chrIX 129806 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=5.513;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.186;QD=22.75;ReadPosRankSum=1.675;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2786,303,0 chrIX 129937 . T A 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=144;Dels=0.00;FS=2.714;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.521;QD=22.88;ReadPosRankSum=2.415;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3294,345,0 chrIX 130004 . T A 2678 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7850;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.91;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2711,291,0 chrIX 130049 . G T 2328 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2987;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.28;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2361,261,0 chrIX 130259 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.600;QD=22.98;ReadPosRankSum=1.699;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2446,264,0 chrIX 130270 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.310;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.369;QD=23.20;ReadPosRankSum=1.633;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2469,264,0 chrIX 130336 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.90;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2666,297,0 chrIX 130461 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.62;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2250,249,0 chrIX 130480 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2725;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.03;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2522,264,0 chrIX 130537 . C T 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.656;DP=131;Dels=0.01;FS=16.099;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.775;QD=17.02;ReadPosRankSum=3.680;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:5,125:130:99:2263,270,0 chrIX 130538 . A C 2158 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.05;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.47;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2191,266,0 chrIX 130586 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.04;FS=0.000;HaplotypeScore=16.9749;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.92;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2625,279,0 chrIX 130684 . G T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.63;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3403,357,0 chrIX 130712 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.69;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3608,384,0 chrIX 130771 . A T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.44;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3764,402,0 chrIX 130852 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.330;HaplotypeScore=8.9032;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.212;QD=22.59;ReadPosRankSum=1.665;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3524,399,0 chrIX 130876 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.27;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3737,396,0 chrIX 131485 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.36;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3887,408,0 chrIX 131490 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=189;Dels=0.00;FS=11.591;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.173;QD=18.85;ReadPosRankSum=2.962;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:3563,399,0 chrIX 131557 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=17.45;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:2825,309,0 chrIX 131563 . C A 2661 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.28;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2694,288,0 chrIX 131617 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.78;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2486,270,0 chrIX 131703 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.16;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2614,285,0 chrIX 131737 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.70;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2789,294,0 chrIX 131883 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.63;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2869,312,0 chrIX 131911 . C G 3049 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.26;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3082,351,0 chrIX 131983 . A G 2945 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2978,324,0 chrIX 132151 . T A 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.110;QD=24.15;ReadPosRankSum=1.673;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2858,309,0 chrIX 132304 . A C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.772;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.441;QD=24.57;ReadPosRankSum=1.708;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3513,387,0 chrIX 132543 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3795,417,0 chrIX 132615 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.4669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4144,468,0 chrIX 132718 . C A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.1114;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.28;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4384,486,0 chrIX 132907 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3823;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.034;QD=21.59;ReadPosRankSum=-0.034;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3303,363,0 chrIX 133353 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.62;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3416,354,0 chrIX 133368 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.194;HaplotypeScore=9.0227;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.502;QD=21.36;ReadPosRankSum=-0.953;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3653,414,0 chrIX 133668 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.75;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2882,315,0 chrIX 133698 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.437;QD=23.32;ReadPosRankSum=1.702;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2738,294,0 chrIX 133869 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.27;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2054,216,0 chrIX 133870 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=2.935;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.962;QD=20.03;ReadPosRankSum=2.296;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1976,219,0 chrIX 133892 . C G 2187 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.44;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2220,243,0 chrIX 134277 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=106;Dels=0.03;FS=2.960;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.685;QD=21.58;ReadPosRankSum=2.402;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2320,249,0 chrIX 134472 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.49;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3523,369,0 chrIX 134641 . T C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=7.534;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.137;QD=23.48;ReadPosRankSum=2.359;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3203,351,0 chrIX 134773 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.8157;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.27;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3653,390,0 chrIX 135075 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=137;Dels=0.00;FS=2.591;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.963;QD=20.23;ReadPosRankSum=2.919;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2804,309,0 chrIX 135361 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.467;QD=22.89;ReadPosRankSum=1.705;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2986,330,0 chrIX 135647 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.05;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3642,405,0 chrIX 135991 . G C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=4.331;HaplotypeScore=10.6989;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.704;QD=22.60;ReadPosRankSum=-0.681;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2790,300,0 chrIX 136075 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.177;QD=21.69;ReadPosRankSum=1.699;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2332,264,0 chrIX 136619 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=24.23;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1414,162,0 chrIX 136762 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.71;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2553,267,0 chrIX 136845 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.785;QD=21.61;ReadPosRankSum=1.703;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2583,273,0 chrIX 136846 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.01;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2470,273,0 chrIX 136891 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1507;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.96;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1891,198,0 chrIX 137062 . A G 1269 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.142;QD=20.80;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1302,138,0 chrIX 137125 . G A 70.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;DP=9;Dels=0.00;FS=2.808;HaplotypeScore=6.7924;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.361;QD=7.80;ReadPosRankSum=-0.729;SB=-1.917e+01 GT:AD:DP:GQ:PL 0/1:4,5:9:11:100,0,11 chrIX 137138 . A C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=11.7539;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.550;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:3,4:8:6:57,6,0 chrIX 137160 . A T 104.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=8.02;SB=-1.108e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:15:137,15,0 chrIX 137334 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.28;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:871,93,0 chrIX 137403 . T C 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.252;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.047;QD=23.49;ReadPosRankSum=1.639;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1795,195,0 chrIX 137636 . A T 1844 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=21.69;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1877,201,0 chrIX 137742 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.43;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1194,132,0 chrIX 137929 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=75;Dels=0.00;FS=8.301;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=2.142;QD=18.55;ReadPosRankSum=2.244;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,71:75:99:1424,159,0 chrIX 138305 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=130;Dels=0.00;FS=2.950;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.734;QD=22.94;ReadPosRankSum=2.335;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3015,333,0 chrIX 138346 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=129;Dels=0.00;FS=6.059;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.055;QD=23.07;ReadPosRankSum=2.946;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3009,333,0 chrIX 138383 . G T 2647 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.05;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2680,294,0 chrIX 138384 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.92;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2682,297,0 chrIX 138455 . A C 2265 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=16.78;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2298,249,0 chrIX 138495 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2224;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.18;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2680,282,0 chrIX 138740 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.00;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3253,360,0 chrIX 138792 . T A 3116 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.61;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3149,339,0 chrIX 139233 . G T 1880 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=16.2890;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=23.80;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1913,204,0 chrIX 139242 . A T 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=78;Dels=0.00;FS=10.653;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-1.195;QD=22.05;ReadPosRankSum=2.884;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1753,192,0 chrIX 139314 . G C 935 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=12.30;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:968,105,0 chrIX 139367 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=16.27;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1709,192,0 chrIX 139370 . A G 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=3.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;MQRankSum=1.405;QD=15.36;ReadPosRankSum=2.403;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1676,186,0 chrIX 139397 . G C 1639 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=16.56;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1672,186,0 chrIX 139404 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=16.11;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1499,165,0 chrIX 139442 . A G 624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=65;Dels=0.00;FS=12.253;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;MQRankSum=-2.830;QD=9.60;ReadPosRankSum=2.892;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:72:657,72,0 chrIX 139448 . C A 591 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=10.02;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:69:624,69,0 chrIX 139458 . T C 513 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=10.06;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:546,63,0 chrIX 139461 . T C 572 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=11.67;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:72:605,72,0 chrIX 139466 . T A 643 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=-1.732;QD=11.91;ReadPosRankSum=1.604;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:78:676,78,0 chrIX 139513 . T A 1610 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=21.76;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1643,174,0 chrIX 140111 . C T 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5521;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.583;QD=23.88;ReadPosRankSum=0.183;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4800,528,0 chrIX 140614 . T G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.071;QD=22.59;ReadPosRankSum=2.391;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1953,216,0 chrIX 141013 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.94;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2944,324,0 chrIX 141022 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.373;QD=21.12;ReadPosRankSum=1.705;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2779,297,0 chrIX 141321 . T G 3156 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3189,354,0 chrIX 141839 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=106;Dels=0.00;FS=3.938;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.632;QD=23.02;ReadPosRankSum=1.699;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2473,279,0 chrIX 141911 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=5.128;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.367;QD=23.43;ReadPosRankSum=1.702;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2704,306,0 chrIX 142542 . T C 2290 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2323,261,0 chrIX 142906 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3124,336,0 chrIX 143092 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.7002;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.70;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3828,417,0 chrIX 143302 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.51;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4142,430,0 chrIX 145805 . T A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3393,375,0 chrIX 146082 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.586;QD=23.44;ReadPosRankSum=1.707;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3282,360,0 chrIX 146308 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.99;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3958,423,0 chrIX 146901 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.971;DP=169;Dels=0.00;FS=10.549;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=4.993;QD=15.50;ReadPosRankSum=4.543;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:14,155:169:99:2652,274,0 chrIX 146913 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.286;DP=150;Dels=0.00;FS=1.113;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=3.857;QD=12.23;ReadPosRankSum=1.824;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:15,133:150:88:1868,88,0 chrIX 146919 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.6399;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=14.08;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2103,228,0 chrIX 146928 . C T 911.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;DP=151;Dels=0.00;FS=6.587;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=42.92;MQ0=0;MQRankSum=-2.991;QD=6.03;ReadPosRankSum=3.798;SB=-7.910e+02 GT:AD:DP:GQ:PL 0/1:49,102:151:99:941,0,521 chrIX 146932 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=14.28;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2318,246,0 chrIX 146985 . T G 2124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DP=296;Dels=0.00;FS=13.403;HaplotypeScore=50.7742;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=0;MQRankSum=0.948;QD=7.18;ReadPosRankSum=-1.225;SB=-9.630e+02 GT:AD:DP:GQ:PL 0/1:161,133:296:99:2154,0,3089 chrIX 147063 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=33.2274;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=1.002;QD=0.10;ReadPosRankSum=-3.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,40:268:56:56,0,4456 chrIX 147145 . T G 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.075;DP=231;Dels=0.00;FS=14.354;HaplotypeScore=15.8688;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.821;QD=23.39;ReadPosRankSum=4.112;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:6,223:231:99:5404,591,0 chrIX 147414 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5820;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.28;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3538,372,0 chrIX 147523 . G C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.83;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3625,390,0 chrIX 148440 . T G 3004 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.65;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3037,330,0 chrIX 148542 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.74;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3251,357,0 chrIX 148596 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.325;QD=22.02;ReadPosRankSum=1.705;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2873,309,0 chrIX 149536 . G T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.85;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4798,514,0 chrIX 149761 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.3429;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.85;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3736,402,0 chrIX 149978 . C G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.8411;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.65;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3919,438,0 chrIX 150052 . G C 2831 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2864,306,0 chrIX 150261 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=170;Dels=0.00;FS=2.751;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.004;QD=22.95;ReadPosRankSum=2.421;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3901,438,0 chrIX 150599 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3921,441,0 chrIX 151326 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.51;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2737,291,0 chrIX 151503 . A C 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.00;FS=3.031;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.860;QD=0.30;ReadPosRankSum=2.413;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,131:138:9:74,9,0 chrIX 151731 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.61;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4726,516,0 chrIX 151788 . T G 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=213;Dels=0.00;FS=2.574;HaplotypeScore=17.7141;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.901;QD=23.93;ReadPosRankSum=2.910;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:5097,538,0 chrIX 153463 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5294;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.57;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3734,411,0 chrIX 153725 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.12;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3672,390,0 chrIX 154095 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.98;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1923,207,0 chrIX 154922 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3299,363,0 chrIX 155033 . A T 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=24.23;ReadPosRankSum=1.699;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2553,282,0 chrIX 155480 . A C 3085 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.73;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3118,336,0 chrIX 155631 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0487;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.70;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2203,240,0 chrIX 155654 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.067;QD=24.10;ReadPosRankSum=1.699;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2564,273,0 chrIX 155792 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.16;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2249,231,0 chrIX 156015 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=9.724;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.143;QD=23.48;ReadPosRankSum=2.399;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3428,369,0 chrIX 156029 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.32;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3253,366,0 chrIX 157808 . T G 5204.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5204,576,0 chrIX 160170 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3680,408,0 chrIX 160583 . T A 3009 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.19;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3042,324,0 chrIX 160588 . G C 2690 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.21;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2723,309,0 chrIX 163075 . A G 182.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.75;SB=-8.377e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:215,24,0 chrIX 163812 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4566,495,0 chrIX 164017 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3894,409,0 chrIX 164332 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.86;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3015,324,0 chrIX 164883 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2375,261,0 chrIX 165039 . C G 1772 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1805,189,0 chrIX 166175 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1663,180,0 chrIX 171535 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.42;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1647,180,0 chrIX 172231 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3342,357,0 chrIX 173151 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.666;QD=22.92;ReadPosRankSum=2.158;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:3173,319,0 chrIX 173286 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3139,330,0 chrIX 173732 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.48;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3069,324,0 chrIX 174345 . T A 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3863;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.675;QD=24.07;ReadPosRankSum=1.322;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3234,357,0 chrIX 174391 . T A 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=6.448;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.353;QD=22.09;ReadPosRankSum=2.341;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3037,321,0 chrIX 174608 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.32;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4815,511,0 chrIX 174677 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.42;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3778,399,0 chrIX 174966 . C G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=75;Dels=0.00;FS=30.041;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=0;MQRankSum=3.513;QD=0.97;ReadPosRankSum=0.823;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,9:75:99:103,0,148 chrIX 174967 . A C 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DP=77;Dels=0.00;FS=30.041;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=37.58;MQ0=0;MQRankSum=3.090;QD=1.03;ReadPosRankSum=-1.834;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,9:77:99:109,0,156 chrIX 175120 . C A 710 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=19.72;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:743,78,0 chrIX 175126 . A C 649 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=19.09;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:682,75,0 chrIX 175167 . C T 885 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=17.35;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:918,105,0 chrIX 175175 . G C 950 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=18.63;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:983,105,0 chrIX 175738 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=20.67;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3196,336,0 chrIX 175751 . A T 2955 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.24;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2988,318,0 chrIX 175755 . T G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.086;QD=18.50;ReadPosRankSum=1.683;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2641,294,0 chrIX 175811 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.4665;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.74;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3227,351,0 chrIX 175960 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.94;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4118,450,0 chrIX 176421 . G T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.28;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4749,505,0 chrIX 176578 . C T 5316.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5316,568,0 chrIX 177586 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=23.32;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2878,306,0 chrIX 177598 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.94;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2732,288,0 chrIX 177853 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=8.862;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.008;QD=19.09;ReadPosRankSum=2.357;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3087,348,0 chrIX 178160 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.06;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2872,306,0 chrIX 179273 . A G 5979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.547;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.380;QD=21.13;ReadPosRankSum=2.004;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:4,278:283:99:5979,642,0 chrIX 179673 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.68;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1464,153,0 chrIX 179763 . G A 574 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=15.94;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:36:66:607,66,0 chrIX 179764 . A G 588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=37;Dels=0.00;FS=7.907;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.087;QD=15.89;ReadPosRankSum=2.347;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:3,33:37:66:621,66,0 chrIX 180009 . T A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.84;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3677,396,0 chrIX 180412 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2185,231,0 chrIX 180792 . A T 2426 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.10;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2459,261,0 chrIX 180798 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.40;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2277,240,0 chrIX 181236 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.440;QD=24.28;ReadPosRankSum=1.659;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2340,246,0 chrIX 181677 . A G 2659 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2692,294,0 chrIX 182402 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.41;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2538,267,0 chrIX 182483 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1977,213,0 chrIX 182837 . G A 2439 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.91;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2472,267,0 chrIX 182939 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2222,234,0 chrIX 183046 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=23.79;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2983,309,0 chrIX 183064 . T G 2290 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=22.23;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2323,261,0 chrIX 183089 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.53;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2083,225,0 chrIX 183268 . T C 175.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.9062;MLEAC=1;MLEAF=0.500;MQ=47.35;MQ0=0;MQRankSum=0.499;QD=2.30;ReadPosRankSum=3.207;SB=-4.097e+02 GT:AD:DP:GQ:PL 0/1:13,63:76:33:205,0,33 chrIX 183280 . A G 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=69;Dels=0.00;FS=6.214;HaplotypeScore=8.4747;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=0.340;QD=13.87;ReadPosRankSum=2.379;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:990,111,0 chrIX 183324 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.44;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1627,171,0 chrIX 183332 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=5.699;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.732;QD=19.77;ReadPosRankSum=1.688;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1595,180,0 chrIX 183373 . T C 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.18;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1526,171,0 chrIX 183545 . A G 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=81;Dels=0.00;FS=2.775;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-1.750;QD=21.49;ReadPosRankSum=2.389;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1774,195,0 chrIX 183552 . G T 1688 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.10;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1721,183,0 chrIX 183567 . T C 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.321;QD=23.09;ReadPosRankSum=1.689;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1903,201,0 chrIX 183795 . A C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-0.951;QD=23.57;ReadPosRankSum=1.664;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2437,264,0 chrIX 183943 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4177,456,0 chrIX 184053 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.15;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3420,372,0 chrIX 184760 . G T 3025 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.01;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3058,324,0 chrIX 187970 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2313,261,0 chrIX 188608 . T C 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.682;DP=199;Dels=0.00;FS=15.506;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.470;QD=21.58;ReadPosRankSum=3.698;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:5,191:199:99:4295,459,0 chrIX 188629 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.65;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4026,441,0 chrIX 188822 . C G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.22;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3600,384,0 chrIX 188845 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3432,372,0 chrIX 188870 . A T 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=138;Dels=0.00;FS=5.665;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.978;QD=21.45;ReadPosRankSum=2.949;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2993,318,0 chrIX 188877 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.98;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2631,297,0 chrIX 188919 . A T 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.819;QD=21.98;ReadPosRankSum=1.678;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2869,309,0 chrIX 189195 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.37;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3291,351,0 chrIX 189202 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.30;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3005,339,0 chrIX 189322 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=23.27;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3769,405,0 chrIX 189332 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.53;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3177,342,0 chrIX 189347 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.16;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2430,270,0 chrIX 189367 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.674;QD=17.51;ReadPosRankSum=1.653;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2344,255,0 chrIX 189470 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.92;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3323,348,0 chrIX 189692 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.420;QD=20.27;ReadPosRankSum=1.514;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2283,252,0 chrIX 189696 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.865;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.588;QD=21.16;ReadPosRankSum=1.701;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2424,255,0 chrIX 189725 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9711;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.49;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2352,249,0 chrIX 189777 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.928;QD=22.54;ReadPosRankSum=1.701;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2557,276,0 chrIX 189843 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.48;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1989,219,0 chrIX 189896 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.33;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2389,255,0 chrIX 190035 . A C 2572 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.96;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2605,279,0 chrIX 190120 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1696;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=24.76;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4555,472,0 chrIX 190142 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.44;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3638,402,0 chrIX 190151 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=6.092;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.166;QD=19.64;ReadPosRankSum=2.370;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3634,396,0 chrIX 190174 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.721;QD=17.73;ReadPosRankSum=1.711;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2888,327,0 chrIX 190296 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.52;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3880,423,0 chrIX 190373 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.40;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3684,399,0 chrIX 190526 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.38;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3260,354,0 chrIX 190788 . C A 2883 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.04;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2916,312,0 chrIX 190795 . C G 2794 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.17;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2827,309,0 chrIX 190867 . G T 2634 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.59;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2667,282,0 chrIX 190898 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.60;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2911,309,0 chrIX 191063 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.78;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2405,264,0 chrIX 191204 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=134;Dels=0.00;FS=10.394;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.153;QD=24.83;ReadPosRankSum=2.947;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:3327,366,0 chrIX 191432 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.144;QD=21.75;ReadPosRankSum=1.703;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2643,279,0 chrIX 191501 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2450,267,0 chrIX 191573 . T C 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.077;DP=99;Dels=0.00;FS=2.895;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.684;QD=22.56;ReadPosRankSum=2.350;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2266,243,0 chrIX 191635 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3164,327,0 chrIX 192113 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.75;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2830,297,0 chrIX 192137 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.15;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2533,264,0 chrIX 192229 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3605,387,0 chrIX 192374 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.50;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2994,321,0 chrIX 192413 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=6.269;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.364;QD=22.90;ReadPosRankSum=2.351;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2895,318,0 chrIX 192670 . T C 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.7991;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.578;QD=23.60;ReadPosRankSum=2.370;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4389,480,0 chrIX 192753 . C T 4764.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4764,511,0 chrIX 193013 . G T 6224.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.14;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6224,678,0 chrIX 193203 . T C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=4.554;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.184;QD=22.60;ReadPosRankSum=1.702;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5288,585,0 chrIX 193298 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=168;Dels=0.00;FS=9.053;HaplotypeScore=15.6041;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.317;QD=21.99;ReadPosRankSum=3.054;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3694,402,0 chrIX 193744 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.33;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3392,375,0 chrIX 193815 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=144;Dels=0.00;FS=2.584;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.434;QD=22.43;ReadPosRankSum=2.951;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3263,348,0 chrIX 194026 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=8.1888;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.833;QD=23.11;ReadPosRankSum=1.706;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3084,330,0 chrIX 194170 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2047;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.65;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3475,372,0 chrIX 194267 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.9083;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3515,369,0 chrIX 194587 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2085,234,0 chrIX 194686 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.370;QD=24.62;ReadPosRankSum=1.703;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2913,309,0 chrIX 195072 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.33;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2953,318,0 chrIX 195082 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.90;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2873,321,0 chrIX 195274 . C G 1221 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.61;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1254,138,0 chrIX 195521 . T A 1195 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.73;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1228,132,0 chrIX 195532 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.57;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1226,132,0 chrIX 195634 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.60;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2050,228,0 chrIX 195661 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.79;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1902,210,0 chrIX 195787 . G T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.59;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3659,384,0 chrIX 195861 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=136;Dels=0.00;FS=8.860;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.155;QD=25.21;ReadPosRankSum=2.377;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3429,366,0 chrIX 195922 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.18;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3315,351,0 chrIX 195961 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.95;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3128,342,0 chrIX 196033 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=158;Dels=0.00;FS=6.105;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=1.213;QD=22.84;ReadPosRankSum=2.386;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3609,399,0 chrIX 196067 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=24.92;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3639,384,0 chrIX 196154 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.83;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3980,426,0 chrIX 196201 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=22.77;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3734,414,0 chrIX 196228 . T G 3014 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=20.79;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3047,339,0 chrIX 196248 . C G 2460 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=126.4347;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=18.92;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2493,273,0 chrIX 196321 . C G 2289 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=130.3760;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=16.23;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2322,258,0 chrIX 196366 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=33.9025;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=17.27;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2434,264,0 chrIX 196407 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=10.445;HaplotypeScore=89.5724;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=2.252;QD=19.53;ReadPosRankSum=2.274;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2220,249,0 chrIX 196459 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.05;FS=0.000;HaplotypeScore=13.4970;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=19.72;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2084,225,0 chrIX 197092 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=24.96;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1880,204,0 chrIX 197177 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=22.79;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1537,168,0 chrIX 197241 . T A 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.406;QD=23.36;ReadPosRankSum=1.689;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1925,210,0 chrIX 197377 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.37;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1241,138,0 chrIX 197446 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.67;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1356,141,0 chrIX 197448 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.678;QD=19.72;ReadPosRankSum=1.678;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1295,141,0 chrIX 197490 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.62;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:964,102,0 chrIX 197558 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=19.09;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:911,105,0 chrIX 197560 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.57;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:979,105,0 chrIX 197573 . T A 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-1.670;QD=19.21;ReadPosRankSum=1.609;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1109,123,0 chrIX 197782 . G T 2138 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.02;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2171,234,0 chrIX 197823 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.03;FS=0.000;HaplotypeScore=28.8816;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.16;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2272,237,0 chrIX 197949 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.7387;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.00;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3201,342,0 chrIX 198073 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=134;Dels=0.00;FS=6.072;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.733;QD=20.96;ReadPosRankSum=2.871;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:2842,318,0 chrIX 198256 . T A 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=169;Dels=0.00;FS=5.441;HaplotypeScore=12.4507;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.185;QD=23.47;ReadPosRankSum=2.935;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3967,435,0 chrIX 198411 . C G 4423.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.34;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4423,492,0 chrIX 198924 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3174,339,0 chrIX 199162 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4101,433,0 chrIX 199233 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3712,399,0 chrIX 199368 . C T 5764.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.92;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5764,616,0 chrIX 199445 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.47;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3779,414,0 chrIX 199623 . T A 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=111;Dels=0.00;FS=7.707;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.521;QD=15.32;ReadPosRankSum=2.339;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1734,189,0 chrIX 199628 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.53;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1703,186,0 chrIX 200213 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7185;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.37;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2844,300,0 chrIX 200287 . A T 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.921;QD=22.09;ReadPosRankSum=1.695;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2109,231,0 chrIX 200298 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.82;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1817,198,0 chrIX 200326 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.34;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1647,180,0 chrIX 200335 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.45;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1583,168,0 chrIX 200457 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=98;Dels=0.00;FS=3.017;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.350;QD=22.95;ReadPosRankSum=2.398;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,93:98:99:2282,243,0 chrIX 201027 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.53;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1700,183,0 chrIX 201057 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.23;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1659,183,0 chrIX 201167 . C G 1274 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1307,141,0 chrIX 201408 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=24.32;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2951,315,0 chrIX 201525 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.45;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3538,393,0 chrIX 201537 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=4.179;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.720;QD=18.78;ReadPosRankSum=1.693;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3343,372,0 chrIX 201555 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=17.68;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2862,309,0 chrIX 201561 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=164;Dels=0.00;FS=7.557;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=-0.142;QD=15.05;ReadPosRankSum=2.300;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2502,279,0 chrIX 201606 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=145;Dels=0.00;FS=9.061;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-1.418;QD=16.24;ReadPosRankSum=3.398;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2388,264,0 chrIX 201607 . G C 2473 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.94;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2506,270,0 chrIX 201645 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.53;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3583,378,0 chrIX 201729 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.94;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4565,501,0 chrIX 201814 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.75;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3837,417,0 chrIX 202086 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2670,294,0 chrIX 202271 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2605,282,0 chrIX 202393 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8323;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.37;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3055,342,0 chrIX 202633 . A T 4858.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.30;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4858,517,0 chrIX 202695 . T G 5237.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5237,594,0 chrIX 202909 . C G 4511.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.4899;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4511,481,0 chrIX 202963 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.728;DP=173;Dels=0.00;FS=17.201;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.966;QD=21.80;ReadPosRankSum=3.719;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:5,167:173:99:3771,429,0 chrIX 203308 . T G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.320;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.878;QD=22.99;ReadPosRankSum=1.685;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1711,186,0 chrIX 203415 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=80.7259;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.60;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1999,213,0 chrIX 204151 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.896;QD=21.85;ReadPosRankSum=1.684;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3201,339,0 chrIX 204156 . A T 3069 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.06;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3102,339,0 chrIX 204609 . A T 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.862;QD=24.04;ReadPosRankSum=1.680;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4784,514,0 chrIX 204746 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.1958;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.00;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3784,405,0 chrIX 204891 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=111;Dels=0.00;FS=5.865;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.468;QD=23.46;ReadPosRankSum=2.845;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:3,107:111:99:2637,294,0 chrIX 204908 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.53;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2682,282,0 chrIX 204990 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.83;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2762,291,0 chrIX 205055 . T G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=0.268;QD=20.81;ReadPosRankSum=1.704;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2613,294,0 chrIX 205156 . A C 2414 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=23.44;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2447,276,0 chrIX 205159 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;QD=24.38;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2495,279,0 chrIX 205192 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=22.50;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1428,159,0 chrIX 205209 . A T 993 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;MQRankSum=-2.395;QD=22.57;ReadPosRankSum=2.282;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,42:44:99:1026,108,0 chrIX 205211 . C T 930 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=22.68;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:963,108,0 chrIX 205213 . T A 946 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:979,105,0 chrIX 205217 . A C 940 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.559;QD=23.50;ReadPosRankSum=1.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:99:973,102,0 chrIX 210650 . A C 100.26 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=2;QD=1.59;SB=-3.113e+02 GT:AD:DP:GQ:PL 1/1:2,60:63:15:133,15,0 chrIX 211064 . A G 2743 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.4681;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.12;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2776,303,0 chrIX 211150 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.45;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4432,498,0 chrIX 211179 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.515;QD=21.89;ReadPosRankSum=1.676;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4072,444,0 chrIX 211211 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.433;QD=22.48;ReadPosRankSum=1.691;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3799,414,0 chrIX 211519 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3489,390,0 chrIX 211652 . A G 5561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=232;Dels=0.00;FS=4.586;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.581;QD=23.97;ReadPosRankSum=1.702;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5561,618,0 chrIX 212171 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.05;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2222,246,0 chrIX 212200 . A G 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.634;QD=20.72;ReadPosRankSum=2.381;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1525,162,0 chrIX 212310 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=22.44;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1716,192,0 chrIX 212523 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=120;Dels=0.00;FS=3.010;HaplotypeScore=8.2274;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-2.119;QD=22.08;ReadPosRankSum=2.388;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2683,297,0 chrIX 212552 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.47;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2931,321,0 chrIX 213122 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3330,363,0 chrIX 213299 . A T 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.521;QD=22.53;ReadPosRankSum=1.642;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2624,276,0 chrIX 213605 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.07;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3754,402,0 chrIX 213938 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.25;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3348,351,0 chrIX 213953 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.48;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2941,324,0 chrIX 214397 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.26;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4439,495,0 chrIX 214484 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4525,486,0 chrIX 214643 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.015;QD=23.15;ReadPosRankSum=1.643;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2741,303,0 chrIX 214890 . A T 2581 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=25.06;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2614,276,0 chrIX 215257 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.74;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3012,321,0 chrIX 215328 . T C 1954 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8429;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=15.39;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1987,213,0 chrIX 215732 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=161;Dels=0.00;FS=6.070;HaplotypeScore=12.7470;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.191;QD=21.81;ReadPosRankSum=2.879;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:3,155:161:99:3511,396,0 chrIX 215993 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.68;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3578,378,0 chrIX 215997 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=167;Dels=0.00;FS=5.992;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.213;QD=20.24;ReadPosRankSum=2.921;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:3380,363,0 chrIX 216326 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.02;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3411,375,0 chrIX 216335 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.38;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3256,363,0 chrIX 219192 . T C 6543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=279;Dels=0.00;FS=3.022;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.712;QD=23.45;ReadPosRankSum=2.414;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:2,275:279:99:6543,711,0 chrIX 222311 . A T 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.136;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.742;QD=24.43;ReadPosRankSum=1.712;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4276,453,0 chrIX 224976 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2018,222,0 chrIX 225885 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1478,162,0 chrIX 226380 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=90.8518;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=0.31;SB=-4.848e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:6:47,6,0 chrIX 226381 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=90.8518;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=0.30;SB=-4.768e+02 GT:AD:DP:GQ:PL 1/1:0,50:53:6:47,6,0 chrIX 226583 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=25.20;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2099,225,0 chrIX 227301 . A T 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.377;QD=22.38;ReadPosRankSum=1.612;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2607,273,0 chrIX 232692 . T C 5343.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.08;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5343,571,0 chrIX 233049 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.02;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2249,252,0 chrIX 238349 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.7629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4104,430,0 chrIX 238662 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.499;QD=23.08;ReadPosRankSum=1.713;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4155,441,0 chrIX 239129 . T A 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.685;QD=23.46;ReadPosRankSum=1.685;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3425,381,0 chrIX 240673 . G T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.91;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4634,498,0 chrIX 241041 . A C 805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.301;DP=136;Dels=0.00;FS=21.861;HaplotypeScore=30.8952;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=2.217;QD=5.92;ReadPosRankSum=-0.406;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:32,103:136:30:838,30,0 chrIX 241170 . C G 2276 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.32;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2309,255,0 chrIX 241892 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.585;QD=22.59;ReadPosRankSum=1.677;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4314,495,0 chrIX 242419 . G C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.37;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3378,363,0 chrIX 242535 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.91;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2502,267,0 chrIX 242543 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.391;QD=19.21;ReadPosRankSum=1.619;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2396,258,0 chrIX 242713 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=26.14;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2830,297,0 chrIX 242863 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.682;QD=23.37;ReadPosRankSum=1.653;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3141,351,0 chrIX 242937 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4606,487,0 chrIX 243202 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5328;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.04;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3535,396,0 chrIX 243230 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.091;QD=23.18;ReadPosRankSum=1.692;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4034,432,0 chrIX 243264 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.161;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.457;QD=22.37;ReadPosRankSum=1.693;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3937,429,0 chrIX 243482 . A C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.9582;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.610;QD=21.29;ReadPosRankSum=1.614;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3811,411,0 chrIX 243933 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.32;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2076,222,0 chrIX 244502 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.7491;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.36;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3130,333,0 chrIX 244618 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.02;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3328,360,0 chrIX 244765 . T G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.9856;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.420;QD=21.33;ReadPosRankSum=1.711;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3476,390,0 chrIX 244863 . C T 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;DP=137;Dels=0.00;FS=3.595;HaplotypeScore=13.9257;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.424;QD=19.93;ReadPosRankSum=-1.245;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2764,295,0 chrIX 244901 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0024;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.53;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3294,372,0 chrIX 245022 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.073;HaplotypeScore=14.5963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.509;QD=22.38;ReadPosRankSum=1.707;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3188,342,0 chrIX 245220 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4300,462,0 chrIX 245431 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.69;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4194,459,0 chrIX 245567 . G C 3011 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.6866;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.94;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,144:151:99:3044,336,0 chrIX 245601 . A T 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=3.038;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.215;QD=22.12;ReadPosRankSum=2.386;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3406,363,0 chrIX 245693 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.06;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2702,294,0 chrIX 245762 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=105;Dels=0.00;FS=7.542;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.903;QD=20.96;ReadPosRankSum=3.463;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:6,96:105:99:2234,243,0 chrIX 245765 . C T 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.731;DP=100;Dels=0.00;FS=4.982;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-1.063;QD=21.92;ReadPosRankSum=3.507;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:5,94:100:99:2225,240,0 chrIX 245832 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.30;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1515,162,0 chrIX 245890 . G C 969 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1002,108,0 chrIX 245930 . G A 485 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=17.96;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:54:518,54,0 chrIX 245931 . G A 481 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.50;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:514,54,0 chrIX 245932 . G A 472 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.15;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:505,54,0 chrIX 245951 . A G 193.03 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=12.06;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:226,24,0 chrIX 245966 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.312;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=13.3101;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-2.700;QD=1.30;ReadPosRankSum=1.466;SB=1.24 GT:AD:DP:GQ:PL 1/1:9,4:13:6:48,6,0 chrIX 246074 . A G 540 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=22.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:63:573,63,0 chrIX 246094 . G T 815 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=23.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:93:848,93,0 chrIX 246179 . T A 1121 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=28.02;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1154,120,0 chrIX 246552 . A C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=0.15;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,102:103:6:47,6,0 chrIX 246592 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=12.92;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1738,189,0 chrIX 246643 . A C 3092 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3392;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.48;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3125,372,0 chrIX 246729 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.64;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4375,466,0 chrIX 246817 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.35;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4647,487,0 chrIX 246958 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.17;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4009,447,0 chrIX 247032 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=169;Dels=0.00;FS=6.365;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.271;QD=24.85;ReadPosRankSum=2.420;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4200,442,0 chrIX 247121 . A G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=-0.377;QD=22.18;ReadPosRankSum=1.702;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2606,282,0 chrIX 247126 . G C 2613 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=21.42;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2646,285,0 chrIX 247167 . G C 2386 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=20.93;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2419,264,0 chrIX 247172 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=20.77;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2401,267,0 chrIX 247194 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.707;QD=19.66;ReadPosRankSum=2.368;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2431,264,0 chrIX 247255 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=21.83;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2041,216,0 chrIX 247296 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=22.54;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1160,132,0 chrIX 247307 . C T 1047 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=22.76;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1080,117,0 chrIX 247315 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=30.6607;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=22.00;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:957,108,0 chrIX 247361 . G A 876 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=20.37;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:909,108,0 chrIX 247384 . G C 836 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=19.90;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:869,102,0 chrIX 247387 . T C 786 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=18.71;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:819,96,0 chrIX 247394 . A C 805 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=18.30;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:838,99,0 chrIX 247434 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=17.00;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:849,96,0 chrIX 247477 . T G 684 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.00;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:717,84,0 chrIX 247481 . C G 793 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=13.22;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:826,93,0 chrIX 247491 . A G 670 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=11.75;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:703,81,0 chrIX 247492 . A T 613 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.15;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:646,72,0 chrIX 247495 . C T 651 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.84;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:684,75,0 chrIX 247508 . T A 202.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=54;Dels=0.00;FS=10.017;HaplotypeScore=10.9277;MLEAC=1;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=0.378;QD=3.74;ReadPosRankSum=6.188;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:22,32:54:59:232,0,59 chrIX 247509 . T C 245 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.795;DP=43;Dels=0.00;FS=1.961;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=0.654;QD=5.70;ReadPosRankSum=4.885;SB=-8.400e+01 GT:AD:DP:GQ:PL 1/1:11,32:43:33:278,33,0 chrIX 247510 . C A 248 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.072;DP=43;Dels=0.00;FS=1.961;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=-0.905;QD=5.77;ReadPosRankSum=4.885;SB=-8.400e+01 GT:AD:DP:GQ:PL 1/1:11,32:43:33:281,33,0 chrIX 247514 . T C 239 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.739;DP=67;Dels=0.00;FS=1.329;HaplotypeScore=34.2803;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=0.421;QD=3.57;ReadPosRankSum=7.023;SB=-7.300e+01 GT:AD:DP:GQ:PL 1/1:35,32:67:33:272,33,0 chrIX 247516 . C T 212.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.487;DP=69;Dels=0.00;FS=2.899;HaplotypeScore=36.2484;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=0.678;QD=3.08;ReadPosRankSum=6.631;SB=-7.333e+01 GT:AD:DP:GQ:PL 1/1:35,34:69:14:245,14,0 chrIX 247522 . T C 237.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.172;DP=73;Dels=0.00;FS=4.626;HaplotypeScore=36.2484;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;MQRankSum=0.778;QD=3.25;ReadPosRankSum=6.206;SB=-7.617e+01 GT:AD:DP:GQ:PL 1/1:36,37:73:17:270,17,0 chrIX 247530 . T C 587 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=23.7537;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=9.17;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:72:620,72,0 chrIX 247536 . A T 670 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=9.71;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:75:703,75,0 chrIX 247539 . A T 723 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=10.18;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:81:756,81,0 chrIX 247598 . A C 667 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=9.53;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:700,78,0 chrIX 247608 . G A 519 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=8.24;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:63:552,63,0 chrIX 247613 . C T 483 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=7.67;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:60:516,60,0 chrIX 247623 . G A 727 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=9.82;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:87:760,87,0 chrIX 247635 . T A 846 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=11.43;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:879,99,0 chrIX 247681 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;QD=20.60;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1949,213,0 chrIX 247784 . T C 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;MQRankSum=-0.602;QD=21.56;ReadPosRankSum=1.659;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2081,234,0 chrIX 247791 . C A 2293 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=22.93;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2326,258,0 chrIX 247822 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=17.20;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1650,189,0 chrIX 247828 . A T 1605 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=19.11;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1638,180,0 chrIX 247879 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.85;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2031,210,0 chrIX 247894 . C G 2015 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.68;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2048,222,0 chrIX 247899 . A C 2144 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.02;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2177,240,0 chrIX 247930 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.076;QD=19.87;ReadPosRankSum=1.707;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2735,300,0 chrIX 248675 . T A 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=3.141;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.482;QD=21.15;ReadPosRankSum=1.609;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3574,396,0 chrIX 248946 . T A 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;DP=36;Dels=0.00;FS=41.472;HaplotypeScore=15.4696;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=0;MQRankSum=1.098;QD=1.53;ReadPosRankSum=2.690;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:16,20:36:65:85,0,65 chrIX 248948 . A T 57.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DP=36;Dels=0.00;FS=41.472;HaplotypeScore=15.4696;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=0;MQRankSum=0.398;QD=1.58;ReadPosRankSum=3.518;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:16,20:36:62:87,0,62 chrIX 249546 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.429;QD=21.67;ReadPosRankSum=1.703;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2568,279,0 chrIX 249562 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.65;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2352,255,0 chrIX 249665 . A T 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.306;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.882;QD=18.50;ReadPosRankSum=1.587;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3122,333,0 chrIX 249795 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.239;QD=20.66;ReadPosRankSum=1.702;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2430,267,0 chrIX 250317 . C G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.86;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3543,396,0 chrIX 250337 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.51;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3503,375,0 chrIX 250484 . T G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.47;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4293,465,0 chrIX 250521 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.77;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4374,471,0 chrIX 250581 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=204;Dels=0.00;FS=11.192;HaplotypeScore=20.7475;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.420;QD=21.79;ReadPosRankSum=3.773;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:5,198:204:99:4446,486,0 chrIX 250668 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.11;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4306,454,0 chrIX 250683 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.88;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3549,402,0 chrIX 250881 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5946;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.840;QD=22.27;ReadPosRankSum=1.662;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4432,498,0 chrIX 251030 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.6464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5075,549,0 chrIX 251208 . T A 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=3.969;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=21.41;ReadPosRankSum=1.715;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4325,477,0 chrIX 251499 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3083;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.38;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4009,423,0 chrIX 251544 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.28;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3199,336,0 chrIX 251549 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=17.558;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.915;QD=20.69;ReadPosRankSum=2.371;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2640,297,0 chrIX 251559 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.229;QD=20.70;ReadPosRankSum=1.699;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2227,243,0 chrIX 251784 . T C 2430 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.59;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2463,276,0 chrIX 251795 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.81;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2498,264,0 chrIX 251868 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.56;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2537,270,0 chrIX 251980 . T C 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.460;QD=23.50;ReadPosRankSum=1.664;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2454,264,0 chrIX 252102 . A C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=5.390;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.189;QD=23.42;ReadPosRankSum=1.624;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3031,327,0 chrIX 252323 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.07;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2966,324,0 chrIX 252351 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=6.849;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.035;QD=23.79;ReadPosRankSum=2.333;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2531,270,0 chrIX 252405 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.117;QD=20.14;ReadPosRankSum=1.700;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2188,231,0 chrIX 253139 . C T 6101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.4489;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.791;QD=23.74;ReadPosRankSum=1.282;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,253:257:99:6101,665,0 chrIX 253199 . C G 6360.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.6978;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.73;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,261:268:99:6360,688,0 chrIX 253318 . T C 6440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.331;DP=279;Dels=0.00;FS=29.638;HaplotypeScore=24.5012;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.384;QD=23.08;ReadPosRankSum=4.490;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:7,270:279:99:6440,688,0 chrIX 253488 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.53;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4392,483,0 chrIX 254025 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=24.2002;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.928;QD=10.65;ReadPosRankSum=1.643;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,155:159:99:1726,189,0 chrIX 254261 . T C 5944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.9837;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.325;QD=25.84;ReadPosRankSum=1.717;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5944,634,0 chrIX 254311 . C A 4906.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7940;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.36;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4906,526,0 chrIX 254336 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.71;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3929,450,0 chrIX 254355 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.15;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4212,468,0 chrIX 254492 . A G 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=225;Dels=0.00;FS=2.941;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.126;QD=23.30;ReadPosRankSum=2.406;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5243,576,0 chrIX 254748 . T A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3857,400,0 chrIX 254891 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3207;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2538,279,0 chrIX 255654 . A C 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=6.877;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.164;QD=21.23;ReadPosRankSum=2.318;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3992,435,0 chrIX 256045 . C T 803 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:836,90,0 chrIX 256089 . G A 784 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.19;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:817,87,0 chrIX 256094 . T A 715 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.86;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:748,81,0 chrIX 256304 . T C 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.646;QD=25.06;ReadPosRankSum=2.402;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3860,426,0 chrIX 256581 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.95;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3622,387,0 chrIX 256673 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=136;Dels=0.00;FS=5.956;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.007;QD=19.49;ReadPosRankSum=2.903;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2684,291,0 chrIX 256715 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=17.63;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2396,258,0 chrIX 256728 . G T 2398 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=16.89;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2431,261,0 chrIX 256751 . A G 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=152;Dels=0.05;FS=9.667;HaplotypeScore=9.9637;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-1.307;QD=13.49;ReadPosRankSum=2.415;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,140:145:99:2084,240,0 chrIX 256752 . G A 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.814;DP=150;Dels=0.00;FS=6.528;HaplotypeScore=2.8274;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=1.461;QD=13.97;ReadPosRankSum=4.108;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:7,143:150:99:2129,240,0 chrIX 256796 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.98;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2197,234,0 chrIX 256885 . C G 4028.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.13;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4028,450,0 chrIX 256921 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=23.90;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4206,447,0 chrIX 256951 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=19.17;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3101,339,0 chrIX 256984 . A G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.448;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.139;QD=19.26;ReadPosRankSum=2.321;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2248,240,0 chrIX 257003 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=92.9275;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=0.22;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:6:55,6,0 chrIX 257011 . T C 197.01 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=94.6545;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=1.71;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:27:230,27,0 chrIX 257135 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.75;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3127,327,0 chrIX 257381 . T A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.11;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3420,369,0 chrIX 257464 . T A 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=5.418;HaplotypeScore=11.3163;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.479;QD=13.01;ReadPosRankSum=1.622;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1256,135,0 chrIX 257516 . A G 432 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=8.5587;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;QD=4.80;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:51:465,51,0 chrIX 257521 . C T 441 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=5.19;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:51:474,51,0 chrIX 257522 . G T 417 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=4.79;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:48:450,48,0 chrIX 257534 . C A 664 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=6.99;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:75:697,75,0 chrIX 257591 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=19.28;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1595,165,0 chrIX 257638 . C T 2094 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.93;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2127,225,0 chrIX 257809 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=8.970;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.250;QD=23.73;ReadPosRankSum=2.419;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3868,417,0 chrIX 257823 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.99;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3747,417,0 chrIX 257945 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.7336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3458,372,0 chrIX 258080 . C G 4104.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.43;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4104,450,0 chrIX 258259 . A G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.638;QD=21.65;ReadPosRankSum=2.413;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2913,315,0 chrIX 258345 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2788;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.24;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4290,462,0 chrIX 258854 . T A 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.607;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.490;QD=24.99;ReadPosRankSum=2.349;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2482,270,0 chrIX 259266 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0241;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.43;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3795,414,0 chrIX 259323 . T A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3738,399,0 chrIX 259533 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.99;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2585,282,0 chrIX 259701 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.81;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2061,219,0 chrIX 259794 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.92;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1677,186,0 chrIX 259913 . G A 840 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.80;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:873,93,0 chrIX 260018 . T A 964 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.54;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:997,105,0 chrIX 260022 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.86;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:944,102,0 chrIX 260120 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=26.89;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2238,237,0 chrIX 260167 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=26.05;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2404,261,0 chrIX 260232 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.27;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2011,213,0 chrIX 260247 . A C 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=3.750;HaplotypeScore=3.4629;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.730;QD=20.94;ReadPosRankSum=1.523;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1792,201,0 chrIX 260320 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=7.105;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=0.260;QD=17.00;ReadPosRankSum=2.395;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1563,171,0 chrIX 260331 . A G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-1.546;QD=16.89;ReadPosRankSum=1.695;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1604,168,0 chrIX 260350 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.98;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1743,183,0 chrIX 260376 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=14.91;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1822,192,0 chrIX 260388 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=13.42;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1778,189,0 chrIX 260414 . T A 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.748;QD=17.34;ReadPosRankSum=2.295;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2513,279,0 chrIX 260769 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.25;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2701,288,0 chrIX 261061 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1539,159,0 chrIX 261156 . A T 1445 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.57;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1478,159,0 chrIX 261221 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1875,210,0 chrIX 261261 . G A 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.230;QD=24.41;ReadPosRankSum=1.690;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:2108,225,0 chrIX 261499 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.3485;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.09;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3734,399,0 chrIX 261520 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.80;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3640,396,0 chrIX 261805 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.54;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2984,327,0 chrIX 262330 . C G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3494,375,0 chrIX 262414 . T G 3118 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3151,354,0 chrIX 262771 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.50;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3505,387,0 chrIX 263059 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.66;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3852,423,0 chrIX 263188 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3687,393,0 chrIX 263590 . T A 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.181;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.933;QD=23.62;ReadPosRankSum=1.643;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3685,393,0 chrIX 263911 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4180,459,0 chrIX 264166 . T A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.55;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4194,450,0 chrIX 264361 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.37;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3295,357,0 chrIX 264604 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2699,297,0 chrIX 265161 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3373,366,0 chrIX 265508 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.84;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3648,393,0 chrIX 265537 . C A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.62;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4434,474,0 chrIX 265732 . A C 4748.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.2013;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.74;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4748,519,0 chrIX 265793 . G T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.2395;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.24;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4903,537,0 chrIX 266696 . G A 6444.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.93;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6444,688,0 chrIX 266717 . A G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=294;Dels=0.00;FS=3.631;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.129;QD=20.04;ReadPosRankSum=1.673;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:5892,654,0 chrIX 266720 . C T 6058.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=4.9259;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.47;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6058,655,0 chrIX 266933 . C T 6986.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=21.2027;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.39;SB=-3.893e+03 GT:AD:DP:GQ:PL 1/1:0,310:312:99:6986,754,0 chrIX 267287 . A G 6793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.035;DP=317;Dels=0.00;FS=15.149;HaplotypeScore=31.1510;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.174;QD=21.43;ReadPosRankSum=4.139;SB=-3.716e+03 GT:AD:DP:GQ:PL 1/1:6,310:317:99:6793,771,0 chrIX 267404 . C T 5803.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=21.9841;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.06;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5803,619,0 chrIX 267576 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=199;Dels=0.00;FS=11.129;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.569;QD=21.33;ReadPosRankSum=2.933;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:4244,451,0 chrIX 267764 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.08;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2457,270,0 chrIX 267785 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.35;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3526,375,0 chrIX 267827 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.495;QD=21.36;ReadPosRankSum=1.685;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3173,342,0 chrIX 268176 . G A 6069.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=6.0097;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.99;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6069,634,0 chrIX 268188 . T A 5996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=269;Dels=0.00;FS=9.070;HaplotypeScore=8.7452;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.242;QD=22.29;ReadPosRankSum=2.422;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:5996,645,0 chrIX 268262 . G T 6007.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.41;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6007,646,0 chrIX 268278 . C G 5609.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.57;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:5609,598,0 chrIX 268399 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=20.96;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3626,390,0 chrIX 268413 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=183;Dels=0.00;FS=3.415;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;MQRankSum=-1.559;QD=19.75;ReadPosRankSum=1.655;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:3614,390,0 chrIX 268466 . G T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=16.57;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3247,345,0 chrIX 268483 . G C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9203;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.930;QD=15.72;ReadPosRankSum=1.321;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2816,321,0 chrIX 268690 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.211;QD=23.50;ReadPosRankSum=1.713;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4395,483,0 chrIX 269349 . C T 7429.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=10.6715;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.93;SB=-3.521e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:7429,808,0 chrIX 269523 . C T 5857.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=21.1352;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.33;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5857,636,0 chrIX 269580 . T C 4789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=209;Dels=0.00;FS=3.115;HaplotypeScore=14.7983;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.340;QD=22.91;ReadPosRankSum=1.715;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4789,528,0 chrIX 269763 . C G 6281.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=15.9919;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.29;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6281,708,0 chrIX 269793 . C T 6308.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.54;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6308,667,0 chrIX 269835 . C T 6875.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=23.7135;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6875,745,0 chrIX 269976 . T C 8020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=335;Dels=0.00;FS=3.009;HaplotypeScore=19.1573;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.502;QD=23.94;ReadPosRankSum=2.406;SB=-3.989e+03 GT:AD:DP:GQ:PL 1/1:2,333:335:99:8020,885,0 chrIX 270121 . C T 7338.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.08;SB=-4.174e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:7338,778,0 chrIX 270435 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.1207;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.96;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5005,546,0 chrIX 270588 . C A 3084 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.68;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3117,336,0 chrIX 270694 . T A 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.044;QD=18.07;ReadPosRankSum=2.391;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1551,186,0 chrIX 270915 . C A 2926 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.41;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2959,312,0 chrIX 270968 . T A 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.753;QD=19.79;ReadPosRankSum=1.431;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1854,204,0 chrIX 270969 . A C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.484;QD=21.32;ReadPosRankSum=2.311;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1952,210,0 chrIX 271273 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.197;QD=24.16;ReadPosRankSum=1.606;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2715,294,0 chrIX 271556 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=6.201;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.496;QD=23.10;ReadPosRankSum=2.392;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3950,432,0 chrIX 271960 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4790;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.212;QD=23.66;ReadPosRankSum=1.713;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4282,474,0 chrIX 272006 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=168;Dels=0.00;FS=3.928;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.041;QD=22.18;ReadPosRankSum=1.691;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3726,408,0 chrIX 272078 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4317,457,0 chrIX 272261 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3320,354,0 chrIX 272369 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.27;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3140,333,0 chrIX 272385 . A C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.565;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.483;QD=22.81;ReadPosRankSum=1.649;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2884,303,0 chrIX 272672 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.80;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2166,225,0 chrIX 272678 . A G 1937 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.06;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1970,216,0 chrIX 273060 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2007,216,0 chrIX 273183 . A C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.20;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3805,402,0 chrIX 273224 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=167;Dels=0.00;FS=12.340;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.515;QD=22.96;ReadPosRankSum=2.824;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3834,429,0 chrIX 273421 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.00;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2283,243,0 chrIX 273430 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.734;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.698;QD=16.36;ReadPosRankSum=2.408;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1964,213,0 chrIX 273469 . G C 1896 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.41;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1929,213,0 chrIX 273538 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.39;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3051,336,0 chrIX 273547 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.41;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3361,357,0 chrIX 273624 . C T 4418.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.8981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.27;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4418,468,0 chrIX 273888 . T G 2631 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2664,297,0 chrIX 274009 . G A 775 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.49;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:87:808,87,0 chrIX 274203 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.336;QD=26.08;ReadPosRankSum=2.411;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3338,357,0 chrIX 274263 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.6810;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.205;QD=24.86;ReadPosRankSum=1.676;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4600,487,0 chrIX 274413 . G A 5856.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=20.0107;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5856,628,0 chrIX 274516 . C T 6107.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.45;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:0,267:272:99:6107,646,0 chrIX 274972 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.477;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.274;QD=19.06;ReadPosRankSum=3.708;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:5,118:123:99:2377,258,0 chrIX 275112 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.648;QD=24.08;ReadPosRankSum=2.406;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2730,297,0 chrIX 275129 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.1445;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.23;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2538,285,0 chrIX 275131 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.045;QD=22.78;ReadPosRankSum=1.702;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2676,279,0 chrIX 275192 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.65;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2544,273,0 chrIX 275372 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.366;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.753;QD=21.37;ReadPosRankSum=1.696;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4125,459,0 chrIX 275507 . C T 5600.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.24;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5600,595,0 chrIX 275789 . C T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.57;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4605,484,0 chrIX 275972 . A G 6618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=280;Dels=0.00;FS=4.187;HaplotypeScore=17.5637;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.336;QD=23.64;ReadPosRankSum=1.720;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:1,277:280:99:6618,726,0 chrIX 276080 . C T 8234.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=17.6690;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.46;SB=-3.691e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:8234,883,0 chrIX 276321 . T A 7645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=341;Dels=0.00;FS=8.739;HaplotypeScore=15.2057;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.076;QD=22.42;ReadPosRankSum=2.385;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:2,339:341:99:7645,823,0 chrIX 276483 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=216;Dels=0.00;FS=8.195;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.342;QD=22.86;ReadPosRankSum=2.381;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4937,552,0 chrIX 276744 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.010;QD=21.25;ReadPosRankSum=1.716;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4589,498,0 chrIX 276759 . A G 4769.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.48;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4769,519,0 chrIX 276932 . C T 5152.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.8630;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.31;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5152,544,0 chrIX 277232 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.12;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3570,378,0 chrIX 277347 . T C 2404 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.47;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2437,258,0 chrIX 277526 . T C 608 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.42;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,31:33:69:641,69,0 chrIX 277591 . A T 702 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.00;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:81:735,81,0 chrIX 277596 . T C 704 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=14.98;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:78:737,78,0 chrIX 277761 . A C 2596 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.97;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2629,288,0 chrIX 277905 . C A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.76;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3421,375,0 chrIX 278148 . G C 1999 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.52;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2032,216,0 chrIX 278157 . T A 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.165;QD=22.65;ReadPosRankSum=1.691;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1936,213,0 chrIX 278371 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3065;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.09;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3437,363,0 chrIX 278878 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.72;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2857,300,0 chrIX 278890 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=125;Dels=0.00;FS=5.960;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.903;QD=19.37;ReadPosRankSum=2.927;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2454,264,0 chrIX 278998 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.23;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3936,417,0 chrIX 279154 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.61;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4580,501,0 chrIX 279199 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4668,490,0 chrIX 279316 . T C 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=229;Dels=0.00;FS=7.309;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-2.353;QD=23.99;ReadPosRankSum=2.407;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5493,591,0 chrIX 279526 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=8.144;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.023;QD=22.68;ReadPosRankSum=2.386;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3561,399,0 chrIX 279602 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=153;Dels=0.00;FS=7.773;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.659;QD=23.48;ReadPosRankSum=2.401;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3593,390,0 chrIX 279700 . T A 2589 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.20;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2622,276,0 chrIX 280080 . T G 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=8.8443;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;MQRankSum=-0.157;QD=22.65;ReadPosRankSum=2.787;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,30:33:87:803,87,0 chrIX 280230 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1998,207,0 chrIX 280264 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2390,258,0 chrIX 280331 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.715;QD=22.73;ReadPosRankSum=1.694;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2147,234,0 chrIX 280877 . A G 2964 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.98;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2997,336,0 chrIX 280907 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0985;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.02;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3185,339,0 chrIX 281033 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3562,387,0 chrIX 281171 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.2078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4818,517,0 chrIX 281282 . T G 5979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=242;Dels=0.00;FS=2.970;HaplotypeScore=17.4145;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.273;QD=24.71;ReadPosRankSum=2.419;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5979,646,0 chrIX 281719 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.60;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4404,466,0 chrIX 281795 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=3.565;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.374;QD=22.43;ReadPosRankSum=1.704;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2859,303,0 chrIX 281888 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4125,459,0 chrIX 281969 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.10;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3303,348,0 chrIX 282224 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=147;Dels=0.00;FS=6.801;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.591;QD=22.29;ReadPosRankSum=2.416;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3276,357,0 chrIX 283346 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.05;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2845,306,0 chrIX 283369 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.15;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2425,252,0 chrIX 283390 . A T 2339 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.26;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2372,258,0 chrIX 283475 . T C 3150 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5879;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.16;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3183,345,0 chrIX 283496 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=126;Dels=0.00;FS=3.011;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.384;QD=20.63;ReadPosRankSum=2.253;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2633,285,0 chrIX 283497 . C T 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=3.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.010;QD=19.66;ReadPosRankSum=2.174;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2491,279,0 chrIX 283957 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2794,309,0 chrIX 284072 . G T 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.16;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2692,297,0 chrIX 284253 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.00;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2954,327,0 chrIX 284273 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=125;Dels=0.00;FS=5.909;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.927;QD=23.66;ReadPosRankSum=2.862;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2991,324,0 chrIX 284292 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.60;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3219,339,0 chrIX 284368 . G C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3427,378,0 chrIX 284579 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.74;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3760,393,0 chrIX 284643 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.98;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3999,423,0 chrIX 285060 . T A 3115 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.53;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3148,330,0 chrIX 285202 . A G 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.443;HaplotypeScore=88.9101;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=0.201;QD=24.15;ReadPosRankSum=1.696;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2327,249,0 chrIX 285218 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.80;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2508,264,0 chrIX 285229 . A C 2289 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3485;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.01;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2322,249,0 chrIX 285322 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.17;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,95:100:99:2150,228,0 chrIX 285394 . C G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=25.56;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3425,363,0 chrIX 285492 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.68;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2006,213,0 chrIX 285554 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.87;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2874,318,0 chrIX 285572 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=151;Dels=0.00;FS=15.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.531;QD=21.14;ReadPosRankSum=3.365;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:4,146:151:99:3225,354,0 chrIX 285709 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.649;HaplotypeScore=5.0399;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.611;QD=25.84;ReadPosRankSum=1.657;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3592,378,0 chrIX 285783 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.81;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2835,312,0 chrIX 285807 . A G 250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=128.5298;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.185;QD=1.56;ReadPosRankSum=1.710;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:33:283,33,0 chrIX 285848 . C T 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=0.328;QD=13.78;ReadPosRankSum=1.483;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2142,228,0 chrIX 285874 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=15.0742;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.32;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2745,291,0 chrIX 285902 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.696;QD=19.96;ReadPosRankSum=1.700;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,106:111:99:2249,246,0 chrIX 285959 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.11;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3559,405,0 chrIX 286178 . C T 5910.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.3037;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.36;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5910,642,0 chrIX 286316 . C T 4716.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1554;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.46;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4716,502,0 chrIX 286346 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.25;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4417,477,0 chrIX 287429 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3259,351,0 chrIX 287507 . A T 2322 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2355,252,0 chrIX 288825 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1769,201,0 chrIX 290469 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.20;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3327,345,0 chrIX 292353 . A C 2100 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9573;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.00;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2133,240,0 chrIX 292835 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=164;Dels=0.00;FS=5.728;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.172;QD=22.65;ReadPosRankSum=2.957;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3715,417,0 chrIX 295261 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.1308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.85;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3427,360,0 chrIX 296453 . T A 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=137;Dels=0.00;FS=2.583;HaplotypeScore=12.2687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=25.23;ReadPosRankSum=2.861;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3457,372,0 chrIX 298825 . A G 5751.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.3294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5751,616,0 chrIX 299898 . T G 615.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.447;DP=144;Dels=0.00;FS=345.327;HaplotypeScore=10.8520;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-3.294;QD=4.27;ReadPosRankSum=-8.119;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:78,66:144:99:645,0,1107 chrIX 300452 . G A 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DP=128;Dels=0.00;FS=171.928;HaplotypeScore=9.3982;MLEAC=1;MLEAF=0.500;MQ=43.99;MQ0=0;MQRankSum=-7.945;QD=0.41;ReadPosRankSum=0.129;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,60:128:83:83,0,1348 chrIX 300456 . A G 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DP=132;Dels=0.00;FS=177.830;HaplotypeScore=61.1019;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=-8.674;QD=0.73;ReadPosRankSum=0.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,63:132:99:127,0,1451 chrIX 300461 . G C 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;DP=134;Dels=0.00;FS=168.724;HaplotypeScore=65.0226;MLEAC=1;MLEAF=0.500;MQ=42.47;MQ0=0;MQRankSum=-8.221;QD=0.54;ReadPosRankSum=0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,64:134:99:103,0,1333 chrIX 300468 . A T 162.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.953;DP=130;Dels=0.00;FS=156.283;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=41.77;MQ0=0;MQRankSum=-7.188;QD=1.25;ReadPosRankSum=0.233;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,63:130:99:192,0,1296 chrIX 300472 . T C 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.168;DP=136;Dels=0.00;FS=152.573;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=41.53;MQ0=0;MQRankSum=-6.229;QD=1.04;ReadPosRankSum=-0.095;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,65:136:99:172,0,1492 chrIX 300475 . T G 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=138;Dels=0.00;FS=156.575;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=41.14;MQ0=0;MQRankSum=-8.822;QD=1.31;ReadPosRankSum=-0.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,68:138:99:211,0,1481 chrIX 300482 . G A 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.254;DP=136;Dels=0.00;FS=136.771;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.78;MQ0=0;MQRankSum=-6.511;QD=1.49;ReadPosRankSum=-0.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,64:136:99:233,0,1394 chrIX 300483 . G T 234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;DP=133;Dels=0.00;FS=153.929;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=41.52;MQ0=0;MQRankSum=-7.622;QD=1.76;ReadPosRankSum=-0.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,63:133:99:264,0,1408 chrIX 300505 . G C 420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=133;Dels=0.00;FS=115.118;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=38.81;MQ0=1;MQRankSum=-4.730;QD=3.16;ReadPosRankSum=-1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,65:133:99:450,0,1383 chrIX 300511 . C A 420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.247;DP=134;Dels=0.00;FS=117.689;HaplotypeScore=3.0453;MLEAC=1;MLEAF=0.500;MQ=38.53;MQ0=1;MQRankSum=-7.362;QD=3.13;ReadPosRankSum=-1.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,65:134:99:450,0,1494 chrIX 300519 . C T 481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=138;Dels=0.00;FS=123.456;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=38.81;MQ0=1;MQRankSum=-5.404;QD=3.49;ReadPosRankSum=-0.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,66:138:99:511,0,1486 chrIX 300524 . T A 519.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.545;DP=136;Dels=0.00;FS=108.403;HaplotypeScore=6.7187;MLEAC=1;MLEAF=0.500;MQ=39.50;MQ0=1;MQRankSum=-5.524;QD=3.82;ReadPosRankSum=0.809;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,64:136:99:549,0,1556 chrIX 300532 . T A 427.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;DP=139;Dels=0.00;FS=100.847;HaplotypeScore=7.7081;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=1;MQRankSum=-5.878;QD=3.07;ReadPosRankSum=0.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,68:139:99:457,0,1480 chrIX 300536 . T C 423.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=139;Dels=0.00;FS=99.741;HaplotypeScore=6.9194;MLEAC=1;MLEAF=0.500;MQ=38.28;MQ0=1;MQRankSum=-6.058;QD=3.04;ReadPosRankSum=0.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,68:139:99:453,0,1464 chrIX 300538 . T C 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;DP=141;Dels=0.00;FS=90.463;HaplotypeScore=8.5403;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=1;MQRankSum=-5.227;QD=3.09;ReadPosRankSum=0.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,68:141:99:466,0,1524 chrIX 300544 . T C 386.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.761;DP=135;Dels=0.00;FS=55.406;HaplotypeScore=4.9763;MLEAC=1;MLEAF=0.500;MQ=39.15;MQ0=1;MQRankSum=-3.743;QD=2.86;ReadPosRankSum=0.772;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:69,65:135:99:416,0,1420 chrIX 300655 . T C 379.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=0;MQRankSum=-0.867;QD=2.46;ReadPosRankSum=-2.853;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:121,33:154:99:409,0,2457 chrIX 300677 . C T 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;DP=166;Dels=0.00;FS=16.061;HaplotypeScore=22.9389;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=0;MQRankSum=-4.155;QD=0.83;ReadPosRankSum=-5.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,33:166:99:168,0,2699 chrIX 300680 . G A 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=164;Dels=0.00;FS=25.039;HaplotypeScore=22.1503;MLEAC=1;MLEAF=0.500;MQ=42.47;MQ0=0;MQRankSum=-4.141;QD=0.70;ReadPosRankSum=-4.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,30:164:99:144,0,2635 chrIX 304231 . C G 2536 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2569,279,0 chrIX 306037 . C A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.91;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3922,417,0 chrIX 306403 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=6.512;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.117;QD=23.08;ReadPosRankSum=2.396;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3195,351,0 chrIX 306523 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=132;Dels=0.00;FS=6.118;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.199;QD=23.39;ReadPosRankSum=2.825;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3120,339,0 chrIX 308815 . C A 5598.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.5337;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.04;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5598,601,0 chrIX 308852 . G A 5485.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.59;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5485,609,0 chrIX 308908 . G A 5412.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.9689;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5412,588,0 chrIX 309414 . G A 6510.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6510,691,0 chrIX 310160 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=23.45;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4244,451,0 chrIX 310171 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.47;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4134,438,0 chrIX 310223 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.68;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3779,408,0 chrIX 310226 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.66;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3794,405,0 chrIX 310286 . G T 2942 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.7132;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.01;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2975,318,0 chrIX 310412 . G C 2262 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.96;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,99:103:99:2295,246,0 chrIX 310533 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=15.67;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1553,162,0 chrIX 310671 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=22.23;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1611,180,0 chrIX 310732 . T G 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.178;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.644;QD=21.03;ReadPosRankSum=1.644;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1694,186,0 chrIX 310769 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.08;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1593,168,0 chrIX 310814 . A T 1004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=-1.732;QD=14.76;ReadPosRankSum=1.630;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1037,111,0 chrIX 310815 . G C 969 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=14.68;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1002,111,0 chrIX 310874 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=12.78;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:953,105,0 chrIX 310945 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.55;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1499,165,0 chrIX 311139 . T C 3717.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.296;QD=22.39;ReadPosRankSum=1.648;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3717,417,0 chrIX 311141 . C T 3868.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=23.73;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3868,406,0 chrIX 311143 . G A 3780.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.5319;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.50;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3780,405,0 chrIX 311461 . G A 5269.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.95;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5269,559,0 chrIX 311545 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5790;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.697;QD=22.26;ReadPosRankSum=1.714;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,194:199:99:4430,483,0 chrIX 311578 . C G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.9155;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.63;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3749,426,0 chrIX 311839 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.17;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3746,414,0 chrIX 313898 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.55;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2930,321,0 chrIX 314113 . G A 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5296;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.133;QD=20.60;ReadPosRankSum=1.066;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2196,219,0 chrIX 314131 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.500;QD=17.67;ReadPosRankSum=1.666;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1888,201,0 chrIX 314474 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.05;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4378,483,0 chrIX 314695 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=183;Dels=0.00;FS=7.852;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.181;QD=23.41;ReadPosRankSum=2.423;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4284,471,0 chrIX 314742 . T C 4669.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.11;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4669,501,0 chrIX 314767 . A T 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=205;Dels=0.00;FS=2.882;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.536;QD=21.66;ReadPosRankSum=2.413;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4441,486,0 chrIX 315075 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=15.69;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:2481,270,0 chrIX 315079 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=15.35;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2459,273,0 chrIX 315261 . C G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.41;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3296,363,0 chrIX 315368 . T C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.651;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.340;QD=22.62;ReadPosRankSum=1.698;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2363,255,0 chrIX 315443 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.73;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2691,294,0 chrIX 315641 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.6136;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.118;QD=24.19;ReadPosRankSum=1.658;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3411,369,0 chrIX 315783 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.56;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4028,429,0 chrIX 315806 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.324;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.269;QD=23.66;ReadPosRankSum=1.712;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4093,450,0 chrIX 315884 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=172;Dels=0.00;FS=6.356;HaplotypeScore=10.5176;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.821;QD=23.57;ReadPosRankSum=2.407;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4054,447,0 chrIX 315923 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.761;QD=22.06;ReadPosRankSum=1.622;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3486,390,0 chrIX 316019 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.00;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3768,411,0 chrIX 316046 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.069;QD=24.14;ReadPosRankSum=1.708;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3404,357,0 chrIX 316055 . A C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.06;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3298,351,0 chrIX 316163 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.240;QD=21.81;ReadPosRankSum=2.408;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2607,297,0 chrIX 316207 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.17;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2605,291,0 chrIX 318694 . T A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3938,435,0 chrIX 319670 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3617,399,0 chrIX 320609 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.013;QD=26.20;ReadPosRankSum=1.699;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2810,294,0 chrIX 320712 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3074,336,0 chrIX 322905 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2959,330,0 chrIX 323727 . C A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.22;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4989,529,0 chrIX 323829 . C T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4784,522,0 chrIX 323976 . A G 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=19.95;ReadPosRankSum=2.948;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2746,306,0 chrIX 324115 . A C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.622;QD=20.15;ReadPosRankSum=1.688;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1605,183,0 chrIX 324390 . T C 359 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=18.89;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:42:392,42,0 chrIX 325886 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.366;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=0.175;QD=26.22;ReadPosRankSum=1.693;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2393,252,0 chrIX 326195 . C G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3680,414,0 chrIX 326249 . A G 2786 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2819,318,0 chrIX 326411 . G T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3812,417,0 chrIX 326540 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3505,381,0 chrIX 326669 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.65;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3489,369,0 chrIX 326875 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.658;QD=25.23;ReadPosRankSum=1.683;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3557,384,0 chrIX 327164 . C A 3046 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9725;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.40;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3079,333,0 chrIX 327320 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.1609;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.55;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3100,330,0 chrIX 328162 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=13.3723;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=24.94;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2477,267,0 chrIX 328196 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.53;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2731,294,0 chrIX 328390 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1401;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.09;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4087,447,0 chrIX 328585 . T C 5039.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.44;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5039,549,0 chrIX 329599 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3591,378,0 chrIX 329647 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.338;QD=21.69;ReadPosRankSum=1.706;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2961,330,0 chrIX 330361 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=15.1482;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.65;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3179,333,0 chrIX 331384 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=7.325;HaplotypeScore=12.3023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.196;QD=22.80;ReadPosRankSum=2.362;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3854,426,0 chrIX 331927 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3861,420,0 chrIX 332173 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3512,393,0 chrIX 332459 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.68;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2982,315,0 chrIX 332541 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.02;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3430,378,0 chrIX 332714 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.74;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4428,474,0 chrIX 332947 . C A 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=205;Dels=0.00;FS=3.032;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.853;QD=19.77;ReadPosRankSum=1.698;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4053,426,0 chrIX 333073 . A C 3737.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=20.99;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3737,405,0 chrIX 333345 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=3.614;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.765;QD=24.43;ReadPosRankSum=1.710;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3762,408,0 chrIX 333452 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.46;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3308,348,0 chrIX 333801 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.09;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4337,454,0 chrIX 333942 . T C 6437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.3237;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.744;QD=23.24;ReadPosRankSum=1.720;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:6437,720,0 chrIX 334061 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.613;QD=22.23;ReadPosRankSum=1.687;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5179,582,0 chrIX 334096 . A T 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.0499;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.688;QD=21.89;ReadPosRankSum=1.717;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5013,520,0 chrIX 334155 . T A 2938 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=16.79;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2971,318,0 chrIX 334179 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=14.28;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1490,162,0 chrIX 334188 . T A 1189 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=14.50;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1222,135,0 chrIX 334194 . C T 707 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=11.40;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:740,78,0 chrIX 334200 . A T 375 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-0.962;QD=8.33;ReadPosRankSum=1.655;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:45:408,45,0 chrIX 334207 . T G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DP=45;Dels=0.00;FS=8.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.49;MQ0=0;MQRankSum=3.790;QD=0.58;ReadPosRankSum=-3.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,6:45:56:56,0,253 chrIX 334209 . C T 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=45;Dels=0.00;FS=10.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=4.201;QD=0.91;ReadPosRankSum=-2.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,8:45:71:71,0,158 chrIX 334221 . T A 691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=63;Dels=0.00;FS=3.318;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=2.661;QD=10.97;ReadPosRankSum=3.663;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:9,54:63:60:724,60,0 chrIX 334764 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=25.22;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2202,234,0 chrIX 334815 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=119;Dels=0.00;FS=5.948;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.248;QD=23.25;ReadPosRankSum=2.941;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2800,306,0 chrIX 334919 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.19;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3928,423,0 chrIX 334989 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.54;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2560,267,0 chrIX 335001 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=19.22;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2339,252,0 chrIX 335022 . T A 2347 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=15.86;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2380,255,0 chrIX 335035 . C A 2539 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=14.76;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2572,279,0 chrIX 335344 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.20;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2364,252,0 chrIX 335376 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.96;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2273,255,0 chrIX 335555 . T A 1724 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.30;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1757,192,0 chrIX 335581 . A T 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.485;QD=23.69;ReadPosRankSum=1.686;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1810,192,0 chrIX 335743 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5644;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.11;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2950,309,0 chrIX 335815 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.34;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2615,279,0 chrIX 335817 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=2.894;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.970;QD=21.11;ReadPosRankSum=2.370;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2629,279,0 chrIX 336156 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=7.973;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.835;QD=21.00;ReadPosRankSum=2.272;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3225,348,0 chrIX 336197 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8099;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.61;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3414,363,0 chrIX 336223 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.44;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3063,324,0 chrIX 336289 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.844;QD=20.63;ReadPosRankSum=2.901;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1498,168,0 chrIX 336325 . A C 1021 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.31;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1054,120,0 chrIX 336424 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=15.10;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:788,84,0 chrIX 336464 . T A 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.492;DP=50;Dels=0.00;FS=5.547;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.980;QD=20.26;ReadPosRankSum=2.819;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:99:1046,114,0 chrIX 336519 . C G 1678 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.32;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1711,186,0 chrIX 336546 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.77;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1721,180,0 chrIX 336672 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=89.2627;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1788,198,0 chrIX 336673 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=89.2627;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.463;QD=17.88;ReadPosRankSum=1.698;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1839,198,0 chrIX 336731 . T C 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.798;QD=18.93;ReadPosRankSum=1.693;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1737,189,0 chrIX 336770 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.92;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2378,261,0 chrIX 337002 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.80;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3546,378,0 chrIX 337034 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.12;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3144,333,0 chrIX 337083 . A T 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.321;QD=21.48;ReadPosRankSum=1.636;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2353,249,0 chrIX 337098 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.59;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2473,273,0 chrIX 337219 . T G 2570 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=114.8779;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.56;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2603,282,0 chrIX 337321 . C A 2061 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.08;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2094,225,0 chrIX 337478 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.86;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3256,366,0 chrIX 337519 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.7991;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.72;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4277,448,0 chrIX 337589 . C A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.15;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4565,489,0 chrIX 337621 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.54;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4283,456,0 chrIX 337721 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.832;QD=23.86;ReadPosRankSum=1.678;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3063,336,0 chrIX 337799 . C G 3572.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=10.0882;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.97;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3572,378,0 chrIX 337914 . A T 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=133;Dels=0.00;FS=10.274;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.629;QD=22.72;ReadPosRankSum=2.932;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3055,339,0 chrIX 337948 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.4223;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.59;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3590,390,0 chrIX 338032 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=0.222;QD=21.31;ReadPosRankSum=1.688;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3325,372,0 chrIX 338050 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.945;DP=158;Dels=0.00;FS=2.044;HaplotypeScore=139.7037;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.981;QD=16.77;ReadPosRankSum=3.268;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,152:158:99:2683,309,0 chrIX 338491 . C T 2404 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.80;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2437,258,0 chrIX 338765 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=22.53;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3097,327,0 chrIX 338777 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.91;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2860,312,0 chrIX 338787 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.52;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2906,312,0 chrIX 339383 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=5.708;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.569;QD=23.93;ReadPosRankSum=1.706;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3239,360,0 chrIX 339502 . T C 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=3.598;HaplotypeScore=13.4881;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.223;QD=23.22;ReadPosRankSum=1.704;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5759,642,0 chrIX 339595 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=172;Dels=0.00;FS=6.032;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.473;QD=22.94;ReadPosRankSum=2.947;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3945,438,0 chrIX 339714 . A T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.20;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4477,469,0 chrIX 340156 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.56;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3557,390,0 chrIX 340345 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3812,400,0 chrIX 340669 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.226;QD=21.42;ReadPosRankSum=1.656;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2968,336,0 chrIX 340684 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=151;Dels=0.00;FS=5.942;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.220;QD=21.84;ReadPosRankSum=2.887;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3298,366,0 chrIX 340768 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.2199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3829,408,0 chrIX 340813 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.03;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3502,369,0 chrIX 340927 . A C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.527;QD=22.10;ReadPosRankSum=1.673;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2641,285,0 chrIX 341117 . G T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.05;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3295,354,0 chrIX 341143 . A T 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=7.518;HaplotypeScore=5.1073;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.066;QD=23.34;ReadPosRankSum=2.393;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3067,330,0 chrIX 341215 . C A 2736 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.19;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2769,291,0 chrIX 341299 . T C 2971 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.77;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3004,327,0 chrIX 341595 . C A 736 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:84:769,84,0 chrIX 341662 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.16;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1726,186,0 chrIX 341674 . C T 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.542;QD=19.82;ReadPosRankSum=1.313;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1837,198,0 chrIX 341700 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.14;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2114,222,0 chrIX 341843 . T C 3128 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=26.07;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3161,327,0 chrIX 342312 . T A 2098 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=24.68;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2131,228,0 chrIX 342479 . C A 2947 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2980,315,0 chrIX 344691 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9043;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.81;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5048,538,0 chrIX 344740 . C A 5063.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.8776;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.77;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5063,523,0 chrIX 345129 . G C 3367.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.55;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3367,369,0 chrIX 345192 . A C 2688 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.85;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2721,297,0 chrIX 345247 . A C 3202 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.20;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3235,363,0 chrIX 345656 . A C 2356 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2389,261,0 chrIX 345705 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=126;Dels=0.00;FS=5.243;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.544;QD=20.83;ReadPosRankSum=2.944;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2657,303,0 chrIX 345745 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.646;QD=20.93;ReadPosRankSum=1.655;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2858,309,0 chrIX 345871 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=3.032;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.423;QD=25.01;ReadPosRankSum=2.386;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3876,411,0 chrIX 346096 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4143,456,0 chrIX 346836 . A G 2317 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2350,255,0 chrIX 348722 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=3.037;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.196;QD=23.23;ReadPosRankSum=2.418;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3647,387,0 chrIX 350044 . T C 157.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.71;ReadPosRankSum=1.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,9:10:21:190,21,0 chrIX 350262 . C A 1908 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1941,213,0 chrIX 354047 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=23.88;ReadPosRankSum=2.374;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3137,336,0 chrIX 355540 . C T 927 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:960,108,0 chrIX 360067 . A G 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.990;HaplotypeScore=12.2431;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.472;QD=24.46;ReadPosRankSum=1.697;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4892,537,0 chrIX 362654 . C T 105.26 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=1.35;SB=-5.693e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:15:138,15,0 chrIX 362714 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=13.34;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1940,210,0 chrIX 362718 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=13.67;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1933,213,0 chrIX 362775 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6733;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.76;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2662,288,0 chrIX 362828 . C G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=23.07;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3876,414,0 chrIX 363069 . G A 123.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=13.68;SB=-2.811e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:156,18,0 chrIX 363854 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=4.278;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.140;QD=24.21;ReadPosRankSum=1.666;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3825,405,0 chrIX 365655 . A T 5224.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.0411;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.43;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5224,565,0 chrIX 365725 . G A 5537.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=21.8779;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.87;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,227:232:99:5537,595,0 chrIX 366585 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.17;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2339,252,0 chrIX 366597 . A T 551.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DP=100;Dels=0.00;FS=12.328;HaplotypeScore=5.6015;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=-1.308;QD=5.51;ReadPosRankSum=-1.648;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:65,35:100:99:581,0,1282 chrIX 366602 . G A 457.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DP=98;Dels=0.00;FS=15.741;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-0.347;QD=4.66;ReadPosRankSum=-4.203;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:67,30:98:99:487,0,1461 chrIX 366603 . C T 471.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;DP=99;Dels=0.00;FS=17.914;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=-0.438;QD=4.76;ReadPosRankSum=-4.930;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:69,30:99:99:501,0,1461 chrIX 369589 . G A 5586.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.2691;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5586,618,0 chrIX 370336 . C G 1928 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.42;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1961,210,0 chrIX 370388 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.34;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1387,144,0 chrIX 370396 . T G 1478 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.09;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1511,162,0 chrIX 371957 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.8756;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.45;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2682,291,0 chrIX 372035 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8752;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.77;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3711,399,0 chrIX 372078 . C A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.26;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3372,354,0 chrIX 372095 . C G 3198 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.46;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3231,360,0 chrIX 372134 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=186;Dels=0.00;FS=8.206;HaplotypeScore=12.7579;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.657;QD=22.24;ReadPosRankSum=2.676;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:4,181:186:99:4137,433,0 chrIX 372296 . T C 4437.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.11;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4437,486,0 chrIX 372481 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=152;Dels=0.00;FS=3.016;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.106;QD=19.93;ReadPosRankSum=2.401;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3063,336,0 chrIX 372491 . T G 2748 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.35;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2781,309,0 chrIX 372590 . T A 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=4.426;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=21.21;ReadPosRankSum=1.680;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2854,297,0 chrIX 372678 . C A 2716 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.63;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2749,291,0 chrIX 373876 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3335,354,0 chrIX 374331 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.08;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2572,273,0 chrIX 375282 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1724,186,0 chrIX 377383 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.472;QD=24.18;ReadPosRankSum=1.697;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2427,261,0 chrIX 379276 . A C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.65;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3548,387,0 chrIX 379413 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3843,411,0 chrIX 383251 . A G 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.053;QD=17.11;ReadPosRankSum=2.862;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1658,183,0 chrIX 383339 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2773,294,0 chrIX 383395 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1711,189,0 chrIX 383846 . T C 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=224;Dels=0.00;FS=3.017;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.499;QD=22.44;ReadPosRankSum=2.406;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5026,546,0 chrIX 383892 . G C 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.447;DP=176;Dels=0.00;FS=221.087;HaplotypeScore=16.5847;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=0.425;QD=0.32;ReadPosRankSum=-6.708;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:130,40:176:86:86,0,2018 chrIX 384189 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.746;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.000;QD=22.15;ReadPosRankSum=1.597;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3477,384,0 chrIX 384344 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.680;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.067;QD=18.43;ReadPosRankSum=1.710;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2871,330,0 chrIX 384418 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.668;QD=24.01;ReadPosRankSum=1.707;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3410,366,0 chrIX 385546 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2756,291,0 chrIX 386051 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3524,381,0 chrIX 386249 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=136;Dels=0.00;FS=6.875;HaplotypeScore=13.6296;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.853;QD=22.19;ReadPosRankSum=2.395;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3051,345,0 chrIX 386511 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3274,357,0 chrIX 386682 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.45;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2794,300,0 chrIX 386758 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=23.87;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3390,363,0 chrIX 386815 . G A 2469 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=19.75;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2502,279,0 chrIX 386817 . C T 2209 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=0.196;QD=17.81;ReadPosRankSum=-0.028;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2242,255,0 chrIX 386823 . G A 2404 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=19.23;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2437,264,0 chrIX 386922 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=20.46;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2693,291,0 chrIX 386957 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=20.86;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2244,246,0 chrIX 386979 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=18.76;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1796,204,0 chrIX 386988 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=17.75;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1719,198,0 chrIX 386994 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=18.38;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1742,198,0 chrIX 387056 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=25.46;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2554,273,0 chrIX 387090 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.99;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2024,219,0 chrIX 387107 . A T 1414 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.42;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1447,153,0 chrIX 387109 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.73;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1401,150,0 chrIX 387142 . A G 544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=40;Dels=0.05;FS=10.039;HaplotypeScore=5.7484;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.235;QD=13.60;ReadPosRankSum=2.317;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:3,35:38:63:577,63,0 chrIX 387176 . G A 276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;DP=59;Dels=0.00;FS=2.785;HaplotypeScore=7.8802;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;MQRankSum=-0.337;QD=4.68;ReadPosRankSum=1.191;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:6,53:59:33:309,33,0 chrIX 387186 . C A 344 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=5.64;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:39:377,39,0 chrIX 387190 . G A 559 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=8.60;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:63:592,63,0 chrIX 387229 . T A 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.120;QD=16.85;ReadPosRankSum=1.698;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1735,189,0 chrIX 387314 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=100;Dels=0.00;FS=2.673;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.406;QD=23.04;ReadPosRankSum=2.351;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2337,255,0 chrIX 387368 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=4.046;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-0.735;QD=25.65;ReadPosRankSum=1.706;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3411,366,0 chrIX 387393 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.588;QD=24.88;ReadPosRankSum=2.395;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3384,369,0 chrIX 387419 . A C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=0.050;QD=22.64;ReadPosRankSum=1.707;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3202,354,0 chrIX 387502 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-1.536;QD=23.41;ReadPosRankSum=1.673;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4167,465,0 chrIX 387531 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-0.217;QD=23.20;ReadPosRankSum=1.715;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4825,525,0 chrIX 387587 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=1.645;QD=22.09;ReadPosRankSum=1.667;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3534,396,0 chrIX 387640 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=20.21;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1690,183,0 chrIX 387779 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=22.19;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3572,381,0 chrIX 387804 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=20.94;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2964,330,0 chrIX 387870 . G T 2347 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=21.53;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2380,258,0 chrIX 387908 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=0.541;QD=22.01;ReadPosRankSum=1.696;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2146,231,0 chrIX 387914 . C T 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.022;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-0.603;QD=20.46;ReadPosRankSum=0.681;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1854,213,0 chrIX 387959 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=17.77;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1206,132,0 chrIX 388008 . T C 234 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=21.7984;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=5.44;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:33:267,33,0 chrIX 388015 . T C 647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6729;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;MQRankSum=-1.832;QD=12.44;ReadPosRankSum=0.595;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:75:680,75,0 chrIX 388037 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=116.7697;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=15.64;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1112,120,0 chrIX 388158 . C A 1232 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=22.00;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1265,132,0 chrIX 388181 . G C 957 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=18.76;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:990,105,0 chrIX 388183 . G C 959 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=19.18;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:992,105,0 chrIX 388217 . T G 437 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=12.14;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:470,54,0 chrIX 388220 . A G 280 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=10.00;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:313,36,0 chrIX 388227 . C T 269 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=12.23;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:302,33,0 chrIX 388256 . G A 495 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=16.50;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:528,57,0 chrIX 388279 . T C 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=4.087;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.634;QD=21.51;ReadPosRankSum=1.564;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:915,99,0 chrIX 388304 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=23.10;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1419,150,0 chrIX 388426 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.55;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1348,150,0 chrIX 388444 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.22;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1204,129,0 chrIX 388455 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=15.79;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1186,126,0 chrIX 388464 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=13.07;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1013,117,0 chrIX 388520 . A C 1522 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.34;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1555,174,0 chrIX 388551 . A C 2127 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.17;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2160,231,0 chrIX 388645 . A C 2103 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=23.11;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2136,228,0 chrIX 388656 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.98;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1942,207,0 chrIX 388703 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=23.32;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2412,255,0 chrIX 388882 . C A 2346 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.34;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2379,252,0 chrIX 388951 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=84.7184;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=15.80;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1771,192,0 chrIX 388964 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=80.2412;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=15.56;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1558,171,0 chrIX 388981 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=15.23;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1602,174,0 chrIX 388987 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=15.36;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1707,183,0 chrIX 389094 . G T 2720 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=23.05;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2753,294,0 chrIX 389156 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.20;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2251,240,0 chrIX 389168 . T A 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.712;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.143;QD=24.20;ReadPosRankSum=2.372;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2332,243,0 chrIX 389212 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=0.390;QD=21.21;ReadPosRankSum=1.689;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1730,189,0 chrIX 389244 . C A 1220 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=17.18;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1253,135,0 chrIX 389250 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=126.0791;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.93;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1180,129,0 chrIX 389291 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=15.49;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1350,147,0 chrIX 389295 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=15.66;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1427,150,0 chrIX 389433 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.38;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1857,204,0 chrIX 389512 . T A 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.247;QD=24.13;ReadPosRankSum=1.699;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2567,270,0 chrIX 389745 . C T 5782.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=23.60;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5782,613,0 chrIX 389949 . T C 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=272;Dels=0.00;FS=3.023;HaplotypeScore=8.2381;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=1.109;QD=17.02;ReadPosRankSum=2.422;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:2,269:272:99:4629,510,0 chrIX 389968 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=15.00;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:3946,420,0 chrIX 390114 . C T 8161.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=13.3032;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.43;SB=-3.829e+03 GT:AD:DP:GQ:PL 1/1:0,331:334:99:8161,868,0 chrIX 390275 . A G 7832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=349;Dels=0.00;FS=2.956;HaplotypeScore=21.1512;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.806;QD=22.44;ReadPosRankSum=2.421;SB=-4.089e+03 GT:AD:DP:GQ:PL 1/1:2,346:349:99:7832,853,0 chrIX 390679 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.17;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4403,469,0 chrIX 390703 . T A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.29;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3427,384,0 chrIX 390718 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=2;QD=19.08;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2533,291,0 chrIX 390789 . C T 135.17 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.84;MQ0=0;QD=11.26;SB=5.89 GT:AD:DP:GQ:PL 1/1:0,11:12:18:168,18,0 chrIX 390811 . G A 466 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=0;QD=12.59;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:499,54,0 chrIX 390835 . T A 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;MQRankSum=-1.161;QD=14.55;ReadPosRankSum=2.376;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1008,114,0 chrIX 390856 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=16.82;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1917,210,0 chrIX 390876 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=19.63;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3096,321,0 chrIX 390899 . T G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.061;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.186;QD=19.93;ReadPosRankSum=2.424;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3807,408,0 chrIX 391028 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=196;Dels=0.00;FS=13.305;HaplotypeScore=8.5073;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-1.435;QD=22.86;ReadPosRankSum=3.334;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:4480,489,0 chrIX 391102 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=1;QD=21.10;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4747,522,0 chrIX 391105 . G A 4768.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=1;QD=21.10;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4768,522,0 chrIX 391198 . G A 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=3.074;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=1;MQRankSum=0.380;QD=15.10;ReadPosRankSum=1.715;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3144,348,0 chrIX 391213 . G A 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;DP=178;Dels=0.00;FS=1.340;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;MQRankSum=0.263;QD=13.83;ReadPosRankSum=0.137;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:8,170:178:99:2495,138,0 chrIX 391282 . T G 610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.787;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=38.8593;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=1.480;QD=10.70;ReadPosRankSum=0.598;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,54:57:75:643,75,0 chrIX 391315 . G A 666 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=1;QD=8.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:78:699,78,0 chrIX 391327 . G T 647 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=2;MQRankSum=-0.588;QD=7.19;ReadPosRankSum=-0.660;SB=1.19 GT:AD:DP:GQ:PL 1/1:8,82:90:35:680,35,0 chrIX 391340 . A G 698 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.164;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=67.7498;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=2;MQRankSum=-0.885;QD=7.05;ReadPosRankSum=-1.344;SB=0.326 GT:AD:DP:GQ:PL 1/1:8,91:99:41:731,41,0 chrIX 391345 . A T 422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=40.6875;MLEAC=1;MLEAF=0.500;MQ=19.18;MQ0=2;MQRankSum=-1.769;QD=3.80;ReadPosRankSum=-4.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,77:111:99:452,0,215 chrIX 391372 . G T 568.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.201;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=19.74;MQ0=8;MQRankSum=-0.732;QD=4.58;ReadPosRankSum=0.844;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,93:124:99:598,0,146 chrIX 391408 . G A 606.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.493;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=5;MQRankSum=-1.125;QD=6.66;ReadPosRankSum=2.863;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:14,77:91:10:636,0,10 chrIX 391428 . C T 566 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=5;MQRankSum=0.900;QD=9.93;ReadPosRankSum=0.869;SB=-6.332e-03 GT:AD:DP:GQ:PL 1/1:5,52:57:50:599,50,0 chrIX 391453 . G T 171.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.175;DP=39;Dels=0.00;FS=28.235;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=16.44;MQ0=2;MQRankSum=-0.772;QD=4.39;ReadPosRankSum=1.444;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:4,35:39:24:204,24,0 chrIX 391465 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=28;Dels=0.00;FS=6.702;HaplotypeScore=12.1447;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=1;MQRankSum=-1.342;QD=0.64;ReadPosRankSum=0.046;SB=1.65 GT:AD:DP:GQ:PL 1/1:3,25:28:6:49,6,0 chrIX 391466 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=28;Dels=0.00;FS=4.039;HaplotypeScore=13.1025;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=1;MQRankSum=-2.628;QD=0.64;ReadPosRankSum=1.945;SB=1.65 GT:AD:DP:GQ:PL 1/1:5,23:28:6:49,6,0 chrIX 391750 . G T 467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=9;MQRankSum=-0.869;QD=7.41;ReadPosRankSum=3.244;SB=-6.606e-03 GT:AD:DP:GQ:PL 0/1:21,42:63:44:497,0,44 chrIX 391786 . G A 1832 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=143;Dels=0.00;FS=4.868;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=11;MQRankSum=0.950;QD=12.81;ReadPosRankSum=-4.295;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:17,125:143:86:1865,86,0 chrIX 391797 . T A 329.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=184;Dels=0.00;FS=5.584;HaplotypeScore=33.3390;MLEAC=1;MLEAF=0.500;MQ=33.94;MQ0=11;MQRankSum=3.492;QD=1.79;ReadPosRankSum=-5.662;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:135,49:184:99:359,0,1884 chrIX 391806 . C T 1809.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DP=211;Dels=0.00;FS=10.071;HaplotypeScore=27.7982;MLEAC=1;MLEAF=0.500;MQ=35.19;MQ0=10;MQRankSum=-4.492;QD=8.57;ReadPosRankSum=4.194;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:65,144:211:99:1839,0,773 chrIX 391837 . G A 3354.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;DP=220;Dels=0.00;FS=1.413;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=6;MQRankSum=-0.424;QD=15.25;ReadPosRankSum=4.989;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:11,209:220:99:3354,224,0 chrIX 391849 . A T 1085.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980;DP=197;Dels=0.00;FS=51.095;HaplotypeScore=14.9861;MLEAC=1;MLEAF=0.500;MQ=37.29;MQ0=3;MQRankSum=4.166;QD=5.51;ReadPosRankSum=1.938;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:105,91:197:99:1115,0,1200 chrIX 391876 . T G 330.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;DP=133;Dels=0.05;FS=20.989;HaplotypeScore=49.9106;MLEAC=1;MLEAF=0.500;MQ=37.80;MQ0=2;MQRankSum=-6.108;QD=2.48;ReadPosRankSum=-0.775;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:73,54:127:99:360,0,1140 chrIX 391909 . A G 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;DP=77;Dels=0.00;FS=33.532;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=41.69;MQ0=3;MQRankSum=-1.083;QD=2.19;ReadPosRankSum=-1.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,14:77:99:199,0,765 chrIX 391921 . T G 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.783;DP=64;Dels=0.00;FS=82.467;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=3;MQRankSum=1.257;QD=14.75;ReadPosRankSum=-0.536;SB=-2.007e+00 GT:AD:DP:GQ:PL 1/1:10,54:64:90:977,90,0 chrIX 391933 . C T 1442 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=4;QD=14.87;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,91:97:99:1475,171,0 chrIX 391984 . G A 484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;DP=200;Dels=0.00;FS=37.702;HaplotypeScore=19.5477;MLEAC=1;MLEAF=0.500;MQ=33.75;MQ0=7;MQRankSum=-3.225;QD=2.42;ReadPosRankSum=1.215;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:139,61:200:99:514,0,1914 chrIX 391990 . A G 1481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.683;DP=186;Dels=0.00;FS=27.544;HaplotypeScore=15.4196;MLEAC=1;MLEAF=0.500;MQ=32.88;MQ0=7;MQRankSum=3.897;QD=7.96;ReadPosRankSum=1.535;SB=-7.810e+02 GT:AD:DP:GQ:PL 0/1:61,124:186:99:1511,0,504 chrIX 392002 . G T 280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.487;DP=163;Dels=0.00;FS=22.264;HaplotypeScore=8.8200;MLEAC=1;MLEAF=0.500;MQ=30.73;MQ0=6;MQRankSum=-4.130;QD=1.72;ReadPosRankSum=-6.359;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:114,47:163:99:310,0,1423 chrIX 392008 . A G 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;DP=153;Dels=0.00;FS=21.351;HaplotypeScore=6.3445;MLEAC=1;MLEAF=0.500;MQ=30.05;MQ0=6;MQRankSum=-4.274;QD=1.43;ReadPosRankSum=-6.568;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:111,42:153:99:249,0,1413 chrIX 392022 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=123;Dels=0.00;FS=40.663;HaplotypeScore=8.8055;MLEAC=1;MLEAF=0.500;MQ=30.76;MQ0=5;MQRankSum=-3.640;QD=0.54;ReadPosRankSum=-6.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,24:123:97:97,0,1336 chrIX 392025 . A T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.582;DP=117;Dels=0.00;FS=46.710;HaplotypeScore=10.3829;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=5;MQRankSum=-2.982;QD=0.42;ReadPosRankSum=-6.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,20:117:79:79,0,1331 chrIX 392041 . A G 746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.488;DP=76;Dels=0.00;FS=32.897;HaplotypeScore=8.5003;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=3;MQRankSum=3.000;QD=9.82;ReadPosRankSum=4.310;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:22,54:76:93:779,93,0 chrIX 392058 . C T 160.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.552;DP=41;Dels=0.00;FS=45.776;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=3;MQRankSum=-0.658;QD=3.90;ReadPosRankSum=2.967;SB=0.027 GT:AD:DP:GQ:PL 1/1:20,21:41:24:193,24,0 chrIX 392065 . G A 67.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=3;MQRankSum=0.747;QD=6.14;ReadPosRankSum=-0.747;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:3,8:11:12:100,12,0 chrIX 392074 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.03;MQ0=2;QD=7.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:9:82,9,0 chrIX 392077 . G A 99.26 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=2;QD=9.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:15:132,15,0 chrIX 392089 . G A 487 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=2;QD=17.39;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:57:520,57,0 chrIX 392167 . A G 342.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.695;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=14.4439;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=8;MQRankSum=2.841;QD=5.43;ReadPosRankSum=4.038;SB=-6.112e+01 GT:AD:DP:GQ:PL 1/1:29,34:63:5:373,5,0 chrIX 392184 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.278;DP=35;Dels=0.00;FS=15.453;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=7;MQRankSum=-0.905;QD=0.65;ReadPosRankSum=3.402;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:22,12:35:6:54,6,0 chrIX 392248 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=11;QD=1.56;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,8:14:6:53,6,0 chrIX 392265 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=11;QD=1.63;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:6:54,6,0 chrIX 392278 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=11;MQRankSum=-0.736;QD=1.56;ReadPosRankSum=-0.736;SB=1.26 GT:AD:DP:GQ:PL 1/1:8,6:14:6:53,6,0 chrIX 392518 . A G 562 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;MQRankSum=0.699;QD=14.05;ReadPosRankSum=2.818;SB=1.45 GT:AD:DP:GQ:PL 1/1:4,36:40:69:595,69,0 chrIX 392535 . C T 450.45 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.531;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;MQRankSum=2.706;QD=18.77;ReadPosRankSum=2.357;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,21:24:7:482,7,0 chrIX 392548 . A G 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9891;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=0;MQRankSum=2.824;QD=10.11;ReadPosRankSum=-1.713;SB=-6.540e-03 GT:AD:DP:GQ:PL 0/1:5,14:19:50:222,0,50 chrIX 392551 . G A 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=2.491;QD=9.93;ReadPosRankSum=-2.647;SB=-2.438e-03 GT:AD:DP:GQ:PL 0/1:3,11:14:32:169,0,32 chrIX 392571 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.16;MQ0=2;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:2,5:7:9:65,9,0 chrIX 392578 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=3;MQRankSum=0.358;QD=4.12;ReadPosRankSum=1.231;SB=2.11 GT:AD:DP:GQ:PL 1/1:5,3:8:9:65,9,0 chrIX 392635 . A G 110.13 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=3;QD=4.59;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:3,21:24:18:143,18,0 chrIX 392652 . C T 119.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=3;MQRankSum=-1.313;QD=4.77;ReadPosRankSum=2.227;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:2,23:25:18:152,18,0 chrIX 392665 . A G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=15.4604;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=2;MQRankSum=0.475;QD=1.64;ReadPosRankSum=3.117;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:22,11:33:25:84,0,25 chrIX 392697 . C T 501.08 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160;DP=65;Dels=0.00;FS=5.363;HaplotypeScore=44.8686;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=1.297;QD=7.71;ReadPosRankSum=0.314;SB=-2.951e+02 GT:AD:DP:GQ:PL 1/1:4,61:65:20:534,20,0 chrIX 392776 . A G 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=229;Dels=0.00;FS=16.352;HaplotypeScore=10.9847;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=2.066;QD=21.53;ReadPosRankSum=2.969;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:4930,578,0 chrIX 392833 . T A 1866 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=20.73;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1899,219,0 chrIX 392834 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;QD=22.60;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2044,219,0 chrIX 392873 . G C 344 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=6.04;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:45:377,45,0 chrIX 392929 . C T 1979.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.425;DP=177;Dels=0.00;FS=33.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.16;MQ0=1;MQRankSum=2.140;QD=11.18;ReadPosRankSum=7.115;SB=-1.534e+03 GT:AD:DP:GQ:PL 0/1:26,151:177:99:2009,0,140 chrIX 392932 . G T 2001.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.681;DP=193;Dels=0.00;FS=31.078;HaplotypeScore=138.0156;MLEAC=1;MLEAF=0.500;MQ=33.81;MQ0=1;MQRankSum=-0.032;QD=10.37;ReadPosRankSum=7.262;SB=-1.617e+03 GT:AD:DP:GQ:PL 0/1:37,156:193:99:2031,0,233 chrIX 392939 . C G 1945.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DP=187;Dels=0.01;FS=24.981;HaplotypeScore=149.4165;MLEAC=1;MLEAF=0.500;MQ=34.00;MQ0=1;MQRankSum=0.906;QD=10.40;ReadPosRankSum=6.347;SB=-1.636e+03 GT:AD:DP:GQ:PL 0/1:39,147:186:99:1975,0,252 chrIX 392968 . G A 194.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DP=216;Dels=0.00;FS=9.851;HaplotypeScore=50.3207;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=1;MQRankSum=-1.947;QD=0.90;ReadPosRankSum=7.624;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:174,42:216:99:224,0,2224 chrIX 392998 . G A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=209;Dels=0.02;FS=4.645;HaplotypeScore=228.7471;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=1;MQRankSum=1.630;QD=13.73;ReadPosRankSum=-0.136;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:2903,324,0 chrIX 393028 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=136.7067;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=15.93;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2677,297,0 chrIX 393067 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=204;Dels=0.00;FS=2.810;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;MQRankSum=-1.076;QD=16.85;ReadPosRankSum=2.413;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:3438,372,0 chrIX 393106 . C T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=24.3024;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=20.66;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3843,414,0 chrIX 393177 . G T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=21.11;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3906,417,0 chrIX 393181 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=22.87;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4093,429,0 chrIX 393280 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=6.089;HaplotypeScore=9.7141;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=2.119;QD=24.70;ReadPosRankSum=2.424;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4791,519,0 chrIX 393403 . C T 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=215;Dels=0.00;FS=3.155;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.707;QD=21.13;ReadPosRankSum=-1.456;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4544,472,0 chrIX 393406 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.10;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4297,465,0 chrIX 393415 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.2371;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=18.51;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4239,465,0 chrIX 393506 . T G 4893.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=210;Dels=0.00;FS=9.158;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=1.092;QD=23.30;ReadPosRankSum=2.947;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:3,204:210:99:4893,523,0 chrIX 393511 . C T 4741.01 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.90;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4741,508,0 chrIX 393516 . C T 4580.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=23.13;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4580,492,0 chrIX 393592 . T A 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.771;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.266;QD=23.68;ReadPosRankSum=1.710;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3694,402,0 chrIX 393622 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=25.25;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4318,462,0 chrIX 393738 . C T 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=20.31;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2064,219,0 chrIX 393745 . T G 1962 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;MQRankSum=-0.875;QD=19.43;ReadPosRankSum=1.698;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1995,216,0 chrIX 393746 . A T 1825 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=17.72;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1858,210,0 chrIX 393794 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=88.2471;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.13;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2027,213,0 chrIX 393829 . T C 3118 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.36;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3151,336,0 chrIX 393889 . A C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=127;Dels=0.00;FS=12.328;HaplotypeScore=15.9823;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.107;QD=22.87;ReadPosRankSum=3.773;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:5,120:127:99:2937,315,0 chrIX 393931 . T A 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=106;Dels=0.00;FS=12.636;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.041;QD=21.40;ReadPosRankSum=2.744;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:4,102:106:99:2301,243,0 chrIX 393945 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=21.70;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2680,282,0 chrIX 394019 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=24.44;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3470,372,0 chrIX 394156 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=25.24;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3357,354,0 chrIX 394211 . T G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.134;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=1.269;QD=20.73;ReadPosRankSum=1.708;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2977,333,0 chrIX 394214 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=20.97;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3115,333,0 chrIX 394293 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=167;Dels=0.01;FS=4.215;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-1.560;QD=19.11;ReadPosRankSum=1.711;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,160:166:99:3224,345,0 chrIX 394297 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-1.648;QD=20.67;ReadPosRankSum=1.669;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3431,363,0 chrIX 394357 . T A 2774 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=19.40;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2807,300,0 chrIX 394371 . C G 2670 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.86;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2703,291,0 chrIX 394403 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=22.73;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3079,330,0 chrIX 394423 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.820;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-0.365;QD=19.72;ReadPosRankSum=1.709;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2952,327,0 chrIX 394427 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=19.89;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2996,321,0 chrIX 394552 . T C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.243;QD=21.92;ReadPosRankSum=1.703;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2751,303,0 chrIX 394650 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=118;Dels=0.00;FS=13.522;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.751;QD=20.23;ReadPosRankSum=3.383;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:2420,261,0 chrIX 394651 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.84;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2374,258,0 chrIX 394680 . A G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.720;QD=19.66;ReadPosRankSum=1.701;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2274,252,0 chrIX 394739 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.01;FS=3.999;HaplotypeScore=11.7624;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.904;QD=21.54;ReadPosRankSum=-0.996;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2489,279,0 chrIX 394847 . T C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=11.1188;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.355;QD=19.28;ReadPosRankSum=2.368;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1826,201,0 chrIX 394916 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.135;QD=22.76;ReadPosRankSum=1.705;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2946,324,0 chrIX 394975 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.53;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2681,285,0 chrIX 395011 . T C 2871 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.61;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2904,309,0 chrIX 395073 . C A 2705 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=24.59;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2738,288,0 chrIX 395123 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.48;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2655,291,0 chrIX 395125 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=6.849;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.533;QD=20.02;ReadPosRankSum=2.353;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2596,285,0 chrIX 395274 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.19;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3143,327,0 chrIX 395275 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.97;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3089,333,0 chrIX 395303 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5413;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=17.93;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2597,279,0 chrIX 395356 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.14;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3246,357,0 chrIX 395561 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.25;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3136,342,0 chrIX 395574 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.046;QD=19.88;ReadPosRankSum=1.709;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3015,336,0 chrIX 395693 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.013;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.505;QD=23.04;ReadPosRankSum=2.387;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3641,411,0 chrIX 395873 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.97;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3764,399,0 chrIX 395916 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.85;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3504,372,0 chrIX 395990 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=25.13;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3544,367,0 chrIX 396021 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.30;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3300,360,0 chrIX 396038 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.93;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2903,324,0 chrIX 396045 . T G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.960;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.241;QD=19.31;ReadPosRankSum=2.383;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2891,315,0 chrIX 396138 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.78;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4090,450,0 chrIX 396227 . A T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=25.84;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3617,381,0 chrIX 396307 . C A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=25.02;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3528,369,0 chrIX 396434 . C G 2565 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=20.36;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2598,294,0 chrIX 396463 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=18.32;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2121,234,0 chrIX 396464 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=117;Dels=0.00;FS=8.089;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;MQRankSum=-2.459;QD=17.74;ReadPosRankSum=3.699;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:5,112:117:99:2109,228,0 chrIX 396489 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=15.76;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2145,234,0 chrIX 396504 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.1618;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=15.51;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2267,237,0 chrIX 396505 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.1618;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=15.23;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2241,237,0 chrIX 396557 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.90;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3516,393,0 chrIX 396639 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.452;QD=23.56;ReadPosRankSum=1.688;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3722,396,0 chrIX 396649 . G C 3317.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=22.26;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3317,372,0 chrIX 396753 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6008;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.15;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4396,466,0 chrIX 396851 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.5541;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.040;QD=21.31;ReadPosRankSum=1.705;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2825,315,0 chrIX 396906 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.3230;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.88;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3030,327,0 chrIX 396988 . T A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.18;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3837,426,0 chrIX 397027 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.88;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3478,366,0 chrIX 397058 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=145;Dels=0.00;FS=3.015;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.025;QD=18.12;ReadPosRankSum=2.382;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2661,285,0 chrIX 397063 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.43;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2576,279,0 chrIX 397090 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=17.34;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2495,267,0 chrIX 397230 . T A 2656 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7376;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.10;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2689,291,0 chrIX 397305 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.82;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2155,225,0 chrIX 397309 . A T 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.732;QD=22.16;ReadPosRankSum=1.589;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2183,225,0 chrIX 397392 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.37;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2650,294,0 chrIX 397426 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.70;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3166,339,0 chrIX 397439 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.08;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2844,306,0 chrIX 397547 . T A 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.133;QD=22.98;ReadPosRankSum=1.647;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3722,411,0 chrIX 397575 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.63;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3899,423,0 chrIX 397647 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.78;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4137,450,0 chrIX 397671 . G T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.0136;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.73;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4386,466,0 chrIX 397755 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.67;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3775,396,0 chrIX 397968 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=177;Dels=0.00;FS=2.711;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.672;QD=18.68;ReadPosRankSum=2.408;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3307,348,0 chrIX 397974 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.58;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3198,351,0 chrIX 398084 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.90;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4200,450,0 chrIX 398092 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.7421;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.23;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:4288,451,0 chrIX 398416 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0719;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.44;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3399,363,0 chrIX 398457 . G C 2680 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.10;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2713,303,0 chrIX 398466 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.85;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2852,303,0 chrIX 398482 . T G 2276 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.13;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2309,258,0 chrIX 398541 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.78;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2363,246,0 chrIX 398957 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.1166;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.740;QD=22.20;ReadPosRankSum=1.631;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4595,504,0 chrIX 399062 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.71;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4003,423,0 chrIX 399357 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=20.30;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2469,261,0 chrIX 399370 . A C 2043 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=19.09;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2076,225,0 chrIX 399384 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=17.56;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1701,180,0 chrIX 399393 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=14.39;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1386,150,0 chrIX 399396 . T A 1440 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=14.69;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1473,156,0 chrIX 399404 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=13.60;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1434,153,0 chrIX 399414 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=14.55;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1590,180,0 chrIX 399456 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=19.18;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2411,267,0 chrIX 399517 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=88.5631;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.19;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2355,252,0 chrIX 399532 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=19.57;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2107,225,0 chrIX 399838 . C G 4338.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5697;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=23.58;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4338,471,0 chrIX 399998 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=262;Dels=0.00;FS=6.078;HaplotypeScore=11.2835;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-2.088;QD=14.86;ReadPosRankSum=2.943;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:7,255:262:99:3893,420,0 chrIX 400007 . T A 3129 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=207.6439;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=12.88;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:3162,339,0 chrIX 400141 . A G 6049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=8.0545;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.911;QD=23.91;ReadPosRankSum=1.718;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6049,654,0 chrIX 400508 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=16.91;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2705,288,0 chrIX 400841 . G C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.14;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3864,429,0 chrIX 401177 . T G 3172 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3205,354,0 chrIX 401259 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.26;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2223,234,0 chrIX 401270 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.33;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2081,225,0 chrIX 401375 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2868,309,0 chrIX 402014 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.59;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4275,471,0 chrIX 402032 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.91;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4470,486,0 chrIX 402165 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3818;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.39;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3883,420,0 chrIX 402236 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.48;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4699,504,0 chrIX 402302 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=189;Dels=0.00;FS=12.046;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.473;QD=20.35;ReadPosRankSum=2.930;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:3,182:189:99:3846,420,0 chrIX 402533 . A T 3020 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3053,327,0 chrIX 402576 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.60;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3036,315,0 chrIX 402823 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2424,261,0 chrIX 403138 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4132,459,0 chrIX 403289 . A G 4584.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.6858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4584,492,0 chrIX 403447 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3755,396,0 chrIX 403510 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8195;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.74;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4392,466,0 chrIX 403760 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.55;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4356,465,0 chrIX 403814 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.171;QD=23.42;ReadPosRankSum=1.711;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3817,432,0 chrIX 403850 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3620,396,0 chrIX 403997 . G A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.8246;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.28;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5028,540,0 chrIX 404267 . G A 5218.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=2.6331;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.31;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5218,556,0 chrIX 404274 . A G 4878.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.80;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:4878,549,0 chrIX 404297 . G A 5316.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.05;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:5316,568,0 chrIX 404489 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.3035;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.52;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4583,510,0 chrIX 404597 . C G 4460.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.3781;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.64;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4460,486,0 chrIX 404738 . A T 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.517;QD=23.73;ReadPosRankSum=1.603;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3213,351,0 chrIX 404792 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.471;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.728;QD=18.86;ReadPosRankSum=1.712;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3239,345,0 chrIX 404802 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.63;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3219,348,0 chrIX 405135 . G T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4139,436,0 chrIX 405428 . T G 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=21.7548;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.335;QD=21.29;ReadPosRankSum=1.695;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4023,450,0 chrIX 405665 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.58;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4471,498,0 chrIX 405821 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.75;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4584,489,0 chrIX 405945 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=111;Dels=0.00;FS=2.473;HaplotypeScore=6.3460;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.991;QD=18.31;ReadPosRankSum=2.900;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2065,228,0 chrIX 405973 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.12;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2251,237,0 chrIX 406065 . G T 160.06 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=25.7560;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=4.00;SB=-5.807e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:21:193,21,0 chrIX 406070 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=25.0274;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=1.12;SB=-8.798e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:78,9,0 chrIX 406436 . T C 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.525;QD=23.56;ReadPosRankSum=1.619;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4335,474,0 chrIX 406590 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.506;DP=248;Dels=0.00;FS=17.958;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.106;QD=19.17;ReadPosRankSum=4.399;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:7,241:248:99:4754,534,0 chrIX 406596 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.61;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4962,532,0 chrIX 406941 . T C 4695.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.95;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4695,502,0 chrIX 407041 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.284;QD=23.00;ReadPosRankSum=1.715;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4622,501,0 chrIX 407154 . A C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=164;Dels=0.00;FS=2.942;HaplotypeScore=8.5906;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.872;QD=21.51;ReadPosRankSum=2.389;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3528,396,0 chrIX 407232 . C A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.0192;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.92;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4209,453,0 chrIX 407953 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5177;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.89;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4074,430,0 chrIX 408110 . T G 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.126;QD=24.41;ReadPosRankSum=1.694;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4467,501,0 chrIX 408521 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.80;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3646,399,0 chrIX 408614 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.72;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4483,489,0 chrIX 408637 . C G 4674.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.73;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4674,510,0 chrIX 408665 . C T 4666.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.45;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4666,496,0 chrIX 409106 . A T 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=3.018;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.144;QD=20.89;ReadPosRankSum=2.392;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2707,303,0 chrIX 409125 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.51;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2638,276,0 chrIX 409388 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=125;Dels=0.00;FS=2.583;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.764;QD=23.46;ReadPosRankSum=2.943;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2965,321,0 chrIX 409496 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.1541;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.787;QD=23.42;ReadPosRankSum=1.690;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3935,415,0 chrIX 409532 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.1373;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.30;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3612,379,0 chrIX 409601 . G T 2999 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.47;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3032,330,0 chrIX 409607 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.01;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3206,336,0 chrIX 409769 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.64;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3039,330,0 chrIX 409916 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=2.974;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.884;QD=24.18;ReadPosRankSum=2.382;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3530,387,0 chrIX 410027 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.698;HaplotypeScore=9.7621;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.011;QD=23.99;ReadPosRankSum=1.688;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3766,399,0 chrIX 410111 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.38;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3835,411,0 chrIX 410260 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.06;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3483,366,0 chrIX 410511 . C G 3013 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.15;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3046,345,0 chrIX 410521 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.22;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3158,336,0 chrIX 410727 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.46;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2549,273,0 chrIX 410784 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.170;QD=21.85;ReadPosRankSum=1.698;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2262,258,0 chrIX 410842 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.746;QD=23.76;ReadPosRankSum=1.704;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2956,327,0 chrIX 411193 . A G 5165.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.5423;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.69;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5165,573,0 chrIX 411273 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.95;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4107,444,0 chrIX 411481 . T A 5926.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.9200;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.99;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5926,637,0 chrIX 411553 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=208;Dels=0.00;FS=2.987;HaplotypeScore=10.5856;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.409;QD=22.20;ReadPosRankSum=2.402;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4617,525,0 chrIX 411811 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.46;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2351,258,0 chrIX 411837 . G T 2001 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.99;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2034,222,0 chrIX 411868 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.57;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1500,165,0 chrIX 411882 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.97;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1438,162,0 chrIX 411905 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.44;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1684,189,0 chrIX 412084 . A G 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=4.574;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.490;QD=24.34;ReadPosRankSum=1.692;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2126,228,0 chrIX 412153 . A T 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.890;QD=24.24;ReadPosRankSum=1.700;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2627,261,0 chrIX 412186 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.93;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2160,234,0 chrIX 412202 . T C 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=3.039;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=0.449;QD=18.93;ReadPosRankSum=2.398;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1850,201,0 chrIX 412218 . A G 1963 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.45;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1996,219,0 chrIX 412260 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.87;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2245,237,0 chrIX 412306 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=98;Dels=0.00;FS=7.420;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.344;QD=21.80;ReadPosRankSum=2.400;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2169,237,0 chrIX 412312 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.96;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2119,240,0 chrIX 412381 . A G 2276 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=23.71;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2309,255,0 chrIX 412585 . A G 2227 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.21;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2260,240,0 chrIX 412588 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.936;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.192;QD=20.92;ReadPosRankSum=1.662;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2104,222,0 chrIX 412645 . G T 2643 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.66;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2676,288,0 chrIX 412802 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.595;QD=22.39;ReadPosRankSum=0.880;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2899,324,0 chrIX 412923 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.841;QD=23.96;ReadPosRankSum=1.683;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3354,354,0 chrIX 412962 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=3.023;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.873;QD=22.84;ReadPosRankSum=2.356;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3025,336,0 chrIX 413129 . G T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3324,354,0 chrIX 414362 . T C 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.534;QD=23.87;ReadPosRankSum=1.714;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4535,492,0 chrIX 414531 . G C 5194.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.40;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5194,564,0 chrIX 414641 . T C 4851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.680;QD=24.26;ReadPosRankSum=1.662;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4851,543,0 chrIX 414735 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.03;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4781,519,0 chrIX 414918 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.11;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3858,414,0 chrIX 415204 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.865;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.268;QD=24.86;ReadPosRankSum=1.717;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5569,612,0 chrIX 415315 . C T 5257.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.00;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5257,550,0 chrIX 415367 . G C 4979.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.2667;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.94;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4979,532,0 chrIX 415528 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6055;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.54;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3584,393,0 chrIX 415609 . G T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9687;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.82;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3513,378,0 chrIX 415643 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.71;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3475,366,0 chrIX 415811 . A C 3011 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.35;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3044,327,0 chrIX 415834 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.11;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3129,342,0 chrIX 416075 . A T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.65;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4141,441,0 chrIX 416240 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.25;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5069,532,0 chrIX 416282 . T A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3564,393,0 chrIX 416339 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.79;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3470,366,0 chrIX 416543 . T C 2415 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2448,267,0 chrIX 416627 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.71;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2161,240,0 chrIX 416694 . C G 2368 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2401,255,0 chrIX 417992 . C T 5240.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.0258;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.68;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5240,567,0 chrIX 418028 . G A 4919.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.2353;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.65;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4919,546,0 chrIX 418265 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.13;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2809,309,0 chrIX 418524 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.238;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.316;QD=23.31;ReadPosRankSum=1.682;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3227,342,0 chrIX 418530 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=23.32;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3158,333,0 chrIX 418547 . T A 2671 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.87;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2704,285,0 chrIX 418607 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.26;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3561,381,0 chrIX 418859 . G T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.24;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4671,513,0 chrIX 418993 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4227,453,0 chrIX 419141 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2900,312,0 chrIX 419420 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1312,144,0 chrIX 419460 . A G 660 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;MQRankSum=-1.155;QD=18.33;ReadPosRankSum=1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:78:693,78,0 chrIX 419495 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=9;Dels=0.00;FS=13.222;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.495;QD=2.64;ReadPosRankSum=-0.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,5:9:6:55,6,0 chrIX 419726 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.81;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2086,222,0 chrIX 419999 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.693;QD=20.98;ReadPosRankSum=1.712;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3713,414,0 chrIX 420044 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=159;Dels=0.00;FS=6.565;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.636;QD=21.51;ReadPosRankSum=2.418;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3420,375,0 chrIX 420080 . T A 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3515;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.634;QD=23.71;ReadPosRankSum=1.713;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4197,445,0 chrIX 420167 . T G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=170;Dels=0.00;FS=8.415;HaplotypeScore=13.1984;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.838;QD=23.72;ReadPosRankSum=3.408;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:4032,432,0 chrIX 420215 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=177;Dels=0.00;FS=3.024;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.762;QD=21.41;ReadPosRankSum=2.365;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3789,414,0 chrIX 420376 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=185;Dels=0.00;FS=3.486;HaplotypeScore=15.6177;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.937;QD=22.44;ReadPosRankSum=1.713;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4152,450,0 chrIX 420518 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=221;Dels=0.00;FS=7.149;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.163;QD=22.10;ReadPosRankSum=2.427;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,216:221:99:4885,537,0 chrIX 420530 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.35;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4961,537,0 chrIX 420788 . C G 2961 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.46;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2994,318,0 chrIX 421122 . T A 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0316;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.428;QD=24.83;ReadPosRankSum=1.662;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3700,399,0 chrIX 421228 . T C 7273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=296;Dels=0.00;FS=7.892;HaplotypeScore=18.1027;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.084;QD=24.57;ReadPosRankSum=3.805;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:5,291:296:99:7273,772,0 chrIX 421278 . C T 6228.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=22.4222;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.57;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6228,687,0 chrIX 421475 . G A 6489.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.56;SB=-3.944e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:6489,700,0 chrIX 421490 . T G 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=7.0853;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.432;QD=20.18;ReadPosRankSum=1.637;SB=-3.735e+03 GT:AD:DP:GQ:PL 1/1:1,292:297:99:5994,669,0 chrIX 422134 . G A 5531.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.94;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5531,586,0 chrIX 422341 . C T 7199.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=15.3384;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.37;SB=-3.828e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:7199,784,0 chrIX 422694 . G A 6418.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=20.5782;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.70;SB=-3.925e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:6418,685,0 chrIX 422857 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.4768;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.26;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4465,475,0 chrIX 422867 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=203;Dels=0.00;FS=7.905;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.022;QD=21.51;ReadPosRankSum=2.341;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4366,454,0 chrIX 422955 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.26;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4698,513,0 chrIX 423054 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.59;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4770,516,0 chrIX 423451 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.74;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3561,375,0 chrIX 423556 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.0045;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.396;QD=23.42;ReadPosRankSum=1.683;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3279,363,0 chrIX 424069 . G C 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=213;Dels=0.00;FS=3.632;HaplotypeScore=13.6919;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.138;QD=22.27;ReadPosRankSum=-0.610;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:4743,519,0 chrIX 424253 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.101;QD=24.50;ReadPosRankSum=1.696;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4729,499,0 chrIX 424322 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.812;QD=23.37;ReadPosRankSum=1.713;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4137,447,0 chrIX 424438 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.613;QD=24.65;ReadPosRankSum=1.708;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3623,390,0 chrIX 424571 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.23;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3440,366,0 chrIX 424605 . T A 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6381;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.247;QD=24.87;ReadPosRankSum=1.710;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3904,411,0 chrIX 424642 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.33;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4636,493,0 chrIX 424776 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=6.697;HaplotypeScore=16.8632;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.690;QD=22.07;ReadPosRankSum=2.323;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4304,465,0 chrIX 424866 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2363;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.88;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4376,489,0 chrIX 424960 . G C 4641.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=23.92;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4641,507,0 chrIX 424980 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.169;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-1.661;QD=23.84;ReadPosRankSum=0.329;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4673,501,0 chrIX 425064 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=153;Dels=0.00;FS=9.293;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;MQRankSum=-0.782;QD=22.94;ReadPosRankSum=2.954;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3510,396,0 chrIX 425130 . A T 2653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-1.683;QD=18.95;ReadPosRankSum=1.707;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2686,297,0 chrIX 425132 . G A 2540 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=18.41;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2573,291,0 chrIX 425135 . C T 2567 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=18.34;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2600,288,0 chrIX 425137 . G T 2642 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=18.74;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2675,300,0 chrIX 425170 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=7.644;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-0.055;QD=17.10;ReadPosRankSum=2.418;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:2735,309,0 chrIX 425242 . G A 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.429;DP=174;Dels=0.00;FS=0.562;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;MQRankSum=3.047;QD=5.93;ReadPosRankSum=-11.009;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:79,95:174:98:1064,98,0 chrIX 425281 . G A 912 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=7.79;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:945,108,0 chrIX 425284 . T G 958 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=3.043;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;MQRankSum=-2.210;QD=7.79;ReadPosRankSum=2.210;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:991,117,0 chrIX 425287 . G A 1038 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=8.44;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1071,123,0 chrIX 425311 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=13.92;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1829,210,0 chrIX 425407 . G A 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.453;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.6088;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.058;QD=20.91;ReadPosRankSum=-1.569;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3149,321,0 chrIX 425460 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=4.160;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=1.229;QD=24.45;ReadPosRankSum=1.712;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4206,465,0 chrIX 425513 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.83;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3059,330,0 chrIX 425546 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.63;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2758,297,0 chrIX 425620 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.1261;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.34;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4365,463,0 chrIX 425664 . C A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=23.15;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3588,381,0 chrIX 425707 . T A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.79;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3402,357,0 chrIX 425741 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=24.05;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3183,351,0 chrIX 425781 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.02;FS=0.000;HaplotypeScore=4.6671;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=19.83;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2908,312,0 chrIX 425799 . T A 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.020;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-0.930;QD=20.09;ReadPosRankSum=2.336;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3086,333,0 chrIX 425817 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=6.769;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;MQRankSum=-1.609;QD=17.89;ReadPosRankSum=2.385;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2753,300,0 chrIX 425829 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=17.43;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2665,282,0 chrIX 425839 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=16.65;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2480,273,0 chrIX 425875 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.179;QD=19.94;ReadPosRankSum=1.684;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2925,327,0 chrIX 425933 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.75;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3367,369,0 chrIX 425941 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=20.47;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3185,348,0 chrIX 425954 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.84;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3221,345,0 chrIX 426001 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.80;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3370,378,0 chrIX 426032 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.461;HaplotypeScore=9.0812;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.366;QD=24.14;ReadPosRankSum=1.708;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3452,381,0 chrIX 426151 . T A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=25.40;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3328,357,0 chrIX 426346 . T C 1862 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=112;Dels=0.00;FS=5.579;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=1.392;QD=16.62;ReadPosRankSum=-0.711;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1895,216,0 chrIX 426348 . G A 1787 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DP=109;Dels=0.00;FS=5.603;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.588;QD=16.39;ReadPosRankSum=-0.779;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1820,210,0 chrIX 426350 . T C 1748 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.278;QD=15.47;ReadPosRankSum=1.670;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1781,213,0 chrIX 426351 . C G 1720 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=15.50;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1753,207,0 chrIX 426391 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.14;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1926,213,0 chrIX 426410 . G C 1449 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=13.17;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1482,165,0 chrIX 426423 . A C 1795 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=15.75;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1828,198,0 chrIX 426461 . C T 1938 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=17.62;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1971,213,0 chrIX 426462 . A G 1917 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=0.048;QD=17.59;ReadPosRankSum=1.700;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1950,213,0 chrIX 426471 . T C 1935 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=16.83;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1968,219,0 chrIX 426627 . C A 3183 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=23.93;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3216,336,0 chrIX 426830 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.16;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3706,399,0 chrIX 426856 . T A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.63;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3892,417,0 chrIX 426859 . T A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.91;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3703,399,0 chrIX 426874 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.183;QD=22.48;ReadPosRankSum=2.419;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3709,408,0 chrIX 427016 . A C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.116;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-1.261;QD=22.56;ReadPosRankSum=1.677;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2853,315,0 chrIX 427026 . C T 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=122;Dels=0.00;FS=3.346;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.129;QD=21.83;ReadPosRankSum=1.074;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2696,297,0 chrIX 427189 . A G 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.219;QD=22.33;ReadPosRankSum=1.692;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1976,216,0 chrIX 427341 . A T 1931 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.45;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1964,216,0 chrIX 427389 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.84;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3063,333,0 chrIX 427441 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.37;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3728,396,0 chrIX 427464 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.506;QD=24.86;ReadPosRankSum=2.949;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:3,174:177:99:4400,463,0 chrIX 427584 . A C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=2.933;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.160;QD=22.93;ReadPosRankSum=2.389;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3692,399,0 chrIX 427600 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.74;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3548,390,0 chrIX 427692 . G A 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=215;Dels=0.00;FS=4.554;HaplotypeScore=18.0563;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.631;QD=23.76;ReadPosRankSum=-1.246;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5108,518,0 chrIX 427818 . G A 120.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DP=114;Dels=0.00;FS=16.660;HaplotypeScore=45.9353;MLEAC=1;MLEAF=0.500;MQ=34.35;MQ0=0;MQRankSum=-0.229;QD=1.05;ReadPosRankSum=-4.939;SB=-7.130e+02 GT:AD:DP:GQ:PL 0/1:33,78:114:99:150,0,134 chrIX 427825 . T A 339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=119;Dels=0.00;FS=9.255;HaplotypeScore=30.4967;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;MQRankSum=-2.280;QD=2.85;ReadPosRankSum=2.941;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:39:372,39,0 chrIX 427863 . T C 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=147;Dels=0.00;FS=6.231;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=-0.376;QD=13.12;ReadPosRankSum=2.383;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:1962,207,0 chrIX 428035 . T A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=25.37;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4135,439,0 chrIX 428126 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.492;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=0.328;QD=21.62;ReadPosRankSum=0.936;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3254,348,0 chrIX 428138 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=21.82;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3264,348,0 chrIX 428190 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=-1.395;QD=13.58;ReadPosRankSum=1.708;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:1989,222,0 chrIX 428193 . T A 1983 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=14.27;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2016,216,0 chrIX 428213 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;MQRankSum=-1.686;QD=13.09;ReadPosRankSum=1.709;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:1984,216,0 chrIX 428221 . A T 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;MQRankSum=-1.379;QD=12.53;ReadPosRankSum=1.709;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1875,213,0 chrIX 428225 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=11.24;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1696,192,0 chrIX 428248 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=13.55;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1957,219,0 chrIX 428267 . T C 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=8.779;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;MQRankSum=-0.857;QD=14.47;ReadPosRankSum=2.415;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2088,237,0 chrIX 428297 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=18.94;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2400,255,0 chrIX 428303 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=0.284;QD=18.92;ReadPosRankSum=1.675;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2360,261,0 chrIX 428359 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=112;Dels=0.00;FS=9.644;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-2.202;QD=20.10;ReadPosRankSum=2.936;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:3,107:112:99:2284,261,0 chrIX 428394 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=22.70;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2598,285,0 chrIX 428399 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=21.66;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2546,276,0 chrIX 428473 . T G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.060;QD=18.66;ReadPosRankSum=1.702;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2198,246,0 chrIX 428479 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=117;Dels=0.00;FS=2.863;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.986;QD=20.38;ReadPosRankSum=2.407;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2418,264,0 chrIX 428519 . A C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.411;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=1.528;QD=19.43;ReadPosRankSum=1.707;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2675,288,0 chrIX 428609 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=14.97;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1485,162,0 chrIX 428656 . C G 1554 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=17.46;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1587,177,0 chrIX 428720 . T G 2439 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=119;Dels=0.00;FS=8.684;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.923;QD=20.50;ReadPosRankSum=2.365;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,114:119:99:2472,261,0 chrIX 428722 . A G 2339 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-1.344;QD=19.99;ReadPosRankSum=1.613;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2372,258,0 chrIX 428729 . C T 2391 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=20.61;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2424,258,0 chrIX 428913 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.72;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3172,351,0 chrIX 428948 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.782;QD=25.85;ReadPosRankSum=-0.196;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3238,325,0 chrIX 428983 . A C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.909;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.268;QD=24.54;ReadPosRankSum=1.704;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3076,342,0 chrIX 429037 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.339;QD=25.72;ReadPosRankSum=2.395;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3446,366,0 chrIX 429066 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.570;QD=24.64;ReadPosRankSum=1.662;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3671,402,0 chrIX 429213 . C T 2547 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.77;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2580,285,0 chrIX 429218 . G A 2463 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.61;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2496,267,0 chrIX 429223 . G A 2424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.699;QD=21.26;ReadPosRankSum=-1.033;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2457,264,0 chrIX 429241 . T G 2346 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.05;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2379,264,0 chrIX 429315 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.70;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2496,276,0 chrIX 429333 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.86;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2936,306,0 chrIX 429337 . T G 2766 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.80;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2799,306,0 chrIX 429462 . T A 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-1.312;QD=24.19;ReadPosRankSum=1.697;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2428,255,0 chrIX 429465 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=22.35;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2290,255,0 chrIX 429503 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=18.21;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1854,213,0 chrIX 429512 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=18.05;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1856,207,0 chrIX 429534 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=16.18;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1570,168,0 chrIX 429541 . T C 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=104;Dels=0.00;FS=6.104;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-0.913;QD=14.11;ReadPosRankSum=2.913;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1500,168,0 chrIX 429623 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.90;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2341,261,0 chrIX 429664 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.088;QD=22.99;ReadPosRankSum=1.703;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2769,297,0 chrIX 429743 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-1.485;QD=22.48;ReadPosRankSum=1.691;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1944,210,0 chrIX 429951 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=16.90;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1774,186,0 chrIX 429953 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=15.46;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1610,183,0 chrIX 430024 . C A 2037 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0680;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=16.97;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2070,219,0 chrIX 430092 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.29;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3540,378,0 chrIX 430199 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=141;Dels=0.00;FS=5.981;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=1.591;QD=23.36;ReadPosRankSum=2.891;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,135:141:99:3294,351,0 chrIX 430247 . G C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.75;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3321,354,0 chrIX 430295 . G C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.04;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3527,384,0 chrIX 430308 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.00;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3454,375,0 chrIX 430403 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6443;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=23.21;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2911,318,0 chrIX 430418 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=23.12;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3085,330,0 chrIX 430457 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.35;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2964,333,0 chrIX 430460 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.990;QD=21.40;ReadPosRankSum=1.707;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3051,333,0 chrIX 430567 . A G 2392 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.61;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2425,273,0 chrIX 430585 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.2257;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.26;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1968,228,0 chrIX 430586 . C G 2041 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7484;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.01;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2074,228,0 chrIX 430825 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.06;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3210,342,0 chrIX 430912 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.61;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4431,504,0 chrIX 431143 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.44;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4173,459,0 chrIX 431302 . T A 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=4.023;HaplotypeScore=8.0373;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.174;QD=23.82;ReadPosRankSum=1.709;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3549,375,0 chrIX 431389 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.82;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3400,366,0 chrIX 431611 . A C 6154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=255;Dels=0.00;FS=3.754;HaplotypeScore=18.6618;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.832;QD=24.13;ReadPosRankSum=1.691;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:1,253:255:99:6154,661,0 chrIX 431680 . T A 5958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.7748;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-0.092;QD=24.32;ReadPosRankSum=1.704;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5958,631,0 chrIX 431747 . A G 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=245;Dels=0.00;FS=6.183;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;MQRankSum=-1.544;QD=22.47;ReadPosRankSum=2.359;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5504,594,0 chrIX 431755 . T C 5335.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=1;QD=23.00;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5335,597,0 chrIX 431874 . A C 3710.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=1.710;QD=23.33;ReadPosRankSum=1.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3710,388,0 chrIX 431988 . A C 296 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=1;MQRankSum=-1.733;QD=11.38;ReadPosRankSum=1.595;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:1,25:26:36:329,36,0 chrIX 432192 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=13;MQRankSum=-0.727;QD=0.67;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,3:18:6:43,6,0 chrIX 432219 . C T 565 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=13;MQRankSum=-0.904;QD=13.45;ReadPosRankSum=0.732;SB=0.101 GT:AD:DP:GQ:PL 1/1:2,40:42:66:598,66,0 chrIX 432363 . G A 54.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=9;MQRankSum=1.231;QD=3.93;ReadPosRankSum=-1.231;SB=2.03 GT:AD:DP:GQ:PL 1/1:2,12:14:9:87,9,0 chrIX 432374 . C T 172.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.099;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=16;MQRankSum=2.451;QD=5.93;ReadPosRankSum=-1.606;SB=3.08 GT:AD:DP:GQ:PL 1/1:3,26:29:24:205,24,0 chrIX 432407 . A G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=22;MQRankSum=-3.840;QD=0.41;ReadPosRankSum=0.845;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:68,10:78:62:62,0,970 chrIX 432408 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=22;MQRankSum=-3.305;QD=0.20;ReadPosRankSum=0.892;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:69,10:79:46:46,0,924 chrIX 432568 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.67;MQ0=7;QD=2.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrIX 432630 . A T 397 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=9;QD=15.27;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:430,48,0 chrIX 432632 . T C 409 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=9;QD=15.73;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:442,48,0 chrIX 433012 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;MQRankSum=0.736;QD=7.50;ReadPosRankSum=-0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:77,9,0 chrIX 433015 . A G 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;MQRankSum=0.736;QD=6.66;ReadPosRankSum=-0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:72,9,0 chrIX 433016 . G A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;MQRankSum=0.736;QD=6.66;ReadPosRankSum=-0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:72,9,0 chrIX 433029 . A T 53.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=1.423;QD=4.91;ReadPosRankSum=-1.739;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:9:86,9,0 chrIX 433030 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=11;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=1.423;QD=4.63;ReadPosRankSum=-1.739;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:9:83,9,0 chrIX 433032 . C T 52.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=1.423;QD=4.82;ReadPosRankSum=-1.423;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:9:85,9,0 chrIX 433033 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=1.423;QD=4.63;ReadPosRankSum=-1.423;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:9:83,9,0 chrIX 433038 . T C 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=1.470;QD=3.92;ReadPosRankSum=-0.401;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:9:83,9,0 chrIX 433039 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=1.470;QD=3.54;ReadPosRankSum=-0.401;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:9:78,9,0 chrIX 433052 . C A 64.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.519;QD=4.03;ReadPosRankSum=0.868;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:12:97,12,0 chrIX 433053 . T C 64.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.519;QD=4.03;ReadPosRankSum=1.302;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:12:97,12,0 chrIX 433055 . G A 80.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.651;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.519;QD=5.03;ReadPosRankSum=1.519;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:12:113,12,0 chrIX 433072 . G A 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.51;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:143,15,0 chrIX 433075 . G A 115.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.76;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:148,15,0 chrIX 433080 . A G 113.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.66;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:146,15,0 chrIX 433095 . C T 106.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.59;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:139,15,0 chrIX 433099 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.43;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:57,6,0 chrIX 433102 . A T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.52;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:57,6,0 chrIX 433111 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.30;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:52,6,0 chrIX 433148 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.68;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:57,6,0 chrIX 433149 . C G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrIX 433213 . G A 341 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.31;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:39:374,39,0 chrIX 433253 . G A 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=2;MQRankSum=-0.890;QD=22.97;ReadPosRankSum=-0.796;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:929,99,0 chrIX 433359 . C A 1632 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=12;QD=18.13;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1665,177,0 chrIX 433373 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;DP=84;Dels=0.00;FS=28.328;HaplotypeScore=4.1223;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=13;MQRankSum=-0.855;QD=0.52;ReadPosRankSum=-4.087;SB=-1.304e+01 GT:AD:DP:GQ:PL 0/1:73,11:84:74:74,0,1107 chrIX 433414 . C T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;DP=77;Dels=0.00;FS=105.245;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=21;MQRankSum=4.811;QD=1.42;ReadPosRankSum=0.052;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:58,19:77:99:139,0,260 chrIX 433417 . T C 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;DP=79;Dels=0.00;FS=114.913;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=17.17;MQ0=23;MQRankSum=5.728;QD=1.51;ReadPosRankSum=1.079;SB=-3.006e+00 GT:AD:DP:GQ:PL 0/1:61,18:79:99:149,0,219 chrIX 433447 . T C 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710;DP=91;Dels=0.00;FS=99.405;HaplotypeScore=2.6102;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=31;MQRankSum=4.546;QD=0.82;ReadPosRankSum=0.623;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:63,28:91:99:105,0,401 chrIX 433455 . G C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;DP=100;Dels=0.00;FS=64.721;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=34;MQRankSum=2.499;QD=0.34;ReadPosRankSum=0.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,34:100:64:64,0,495 chrIX 433473 . G A 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;DP=104;Dels=0.00;FS=53.818;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=35;MQRankSum=2.028;QD=0.93;ReadPosRankSum=-0.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,27:104:99:127,0,550 chrIX 433482 . A G 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;DP=109;Dels=0.00;FS=49.886;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=34;MQRankSum=1.508;QD=1.61;ReadPosRankSum=-2.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,32:109:99:206,0,547 chrIX 433492 . A T 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=108;Dels=0.00;FS=28.048;HaplotypeScore=3.6750;MLEAC=1;MLEAF=0.500;MQ=20.67;MQ0=38;MQRankSum=0.611;QD=0.92;ReadPosRankSum=-0.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,26:108:99:129,0,614 chrIX 433493 . G A 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;DP=107;Dels=0.00;FS=7.848;HaplotypeScore=3.0966;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=38;MQRankSum=-0.789;QD=0.89;ReadPosRankSum=-0.828;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:78,29:107:99:125,0,581 chrIX 433498 . T C 672.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=119;Dels=0.00;FS=5.683;HaplotypeScore=3.0966;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=40;MQRankSum=0.716;QD=5.65;ReadPosRankSum=0.224;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:44,75:119:99:702,0,117 chrIX 433584 . T C 1680.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.825;DP=241;Dels=0.00;FS=256.602;HaplotypeScore=51.5704;MLEAC=1;MLEAF=0.500;MQ=19.99;MQ0=58;MQRankSum=0.325;QD=6.97;ReadPosRankSum=3.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,124:241:99:1710,0,711 chrIX 433656 . A T 998.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DP=145;Dels=0.00;FS=114.794;HaplotypeScore=8.1329;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=20;MQRankSum=2.516;QD=6.88;ReadPosRankSum=-2.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1028,0,441 chrIX 433660 . A G 311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.438;DP=125;Dels=0.00;FS=117.835;HaplotypeScore=12.5994;MLEAC=1;MLEAF=0.500;MQ=17.57;MQ0=20;MQRankSum=-2.240;QD=2.49;ReadPosRankSum=3.310;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:58,67:125:99:341,0,898 chrIX 433693 . G C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=8.28;MQ0=26;MQRankSum=0.234;QD=0.46;ReadPosRankSum=3.231;SB=-1.425e+01 GT:AD:DP:GQ:PL 0/1:36,8:44:34:50,0,34 chrIX 433718 . C T 75.26 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.41;MQ0=16;QD=3.14;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:10,14:24:15:108,15,0 chrIX 433724 . A T 99.13 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.89;MQ0=17;QD=3.81;SB=-6.417e+01 GT:AD:DP:GQ:PL 1/1:5,20:25:18:132,18,0 chrIX 433765 . T C 1788.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DP=182;Dels=0.00;FS=31.427;HaplotypeScore=12.6597;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=33;MQRankSum=4.078;QD=9.82;ReadPosRankSum=-4.759;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:42,140:182:99:1818,0,168 chrIX 433783 . C T 2423 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.592;DP=194;Dels=0.00;FS=5.852;HaplotypeScore=15.4331;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=33;MQRankSum=3.329;QD=12.49;ReadPosRankSum=5.363;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:27,167:194:99:2456,207,0 chrIX 433814 . T A 1828.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=191;Dels=0.00;FS=13.742;HaplotypeScore=41.1849;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=27;MQRankSum=5.353;QD=9.57;ReadPosRankSum=2.239;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:44,146:191:86:1858,0,86 chrIX 437544 . T C 64.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=8.83;MQ0=55;MQRankSum=-2.361;QD=0.79;ReadPosRankSum=2.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,80:82:12:97,12,0 chrIX 437803 . G A 25.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=19;Dels=0.00;FS=9.622;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.65;MQ0=8;MQRankSum=-0.118;QD=1.32;ReadPosRankSum=1.061;SB=-2.805e+00 GT:AD:DP:GQ:PL 0/1:8,11:19:16:55,0,16 chrIX 437810 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=2;QD=2.78;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:14:9:71,9,0 chrIX 437819 . T C 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=2;MQRankSum=-1.504;QD=4.09;ReadPosRankSum=1.504;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:1,16:17:12:102,12,0 chrIX 437834 . T A 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=0;QD=7.29;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:24:208,24,0 chrIX 437840 . C T 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=7.00;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:208,24,0 chrIX 437841 . G A 159.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=6.36;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:192,24,0 chrIX 437853 . A C 182.03 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=6.28;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:215,24,0 chrIX 437869 . G A 131.13 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;QD=5.04;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:164,18,0 chrIX 437889 . G A 108.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=4.71;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:141,15,0 chrIX 437902 . G A 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.89;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:143,15,0 chrIX 437905 . T C 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.90;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:106,12,0 chrIX 437909 . G A 83.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.97;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:116,12,0 chrIX 437979 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=3;QD=1.34;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrIX 437988 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=3;QD=1.34;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrIX 437994 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=3;QD=1.34;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrIX 438018 . T C 268 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=6;QD=11.17;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:36:301,36,0 chrIX 438138 . C T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:59,6,0 chrIX 438147 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrIX 438150 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIX 439072 . A T 88.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=9;MQRankSum=0.742;QD=5.53;ReadPosRankSum=-0.742;SB=-6.445e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:7:118,0,7 chrIX 439073 . G A 94.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=9;MQRankSum=0.742;QD=5.90;ReadPosRankSum=-0.742;SB=-6.537e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:7:124,0,7 chrIX 439097 . G A 98.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=9;MQRankSum=0.742;QD=6.15;ReadPosRankSum=0.742;SB=-6.537e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:7:128,0,7 chrIX 439102 . A T 89.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=9;MQRankSum=0.742;QD=5.59;ReadPosRankSum=0.742;SB=-6.537e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:7:119,0,7 chrIX 439103 . T A 91.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=9;MQRankSum=0.742;QD=5.71;ReadPosRankSum=0.742;SB=-6.537e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:7:121,0,7 chrIX 439158 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=1;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIX 439160 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=1;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:6:43,6,0 chrIX 439163 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=1;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIX 439208 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.55;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrIX 439210 . T C 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.747;QD=5.37;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:75,9,0 chrIX 439219 . G T 97.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;DP=13;Dels=0.00;FS=11.139;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=0;MQRankSum=1.470;QD=7.52;ReadPosRankSum=1.203;SB=-3.803e+00 GT:AD:DP:GQ:PL 0/1:1,12:13:4:127,0,4 chrIX 439226 . A G 137.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;QD=6.85;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:170,21,0 chrIX 439232 . T C 68.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=19;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=0;MQRankSum=1.156;QD=3.62;ReadPosRankSum=0.000;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:2,17:19:4:98,0,4 chrIX 439238 . C A 87.28 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=0;QD=4.85;SB=3.71 GT:AD:DP:GQ:PL 1/1:0,17:18:15:120,15,0 chrIX 439239 . G A 78.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=18;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=0;MQRankSum=1.156;QD=4.38;ReadPosRankSum=0.000;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:1,17:18:4:108,0,4 chrIX 439275 . G A 706 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=0;QD=6.99;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:87:739,87,0 chrIX 439278 . A G 746 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;QD=6.97;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,106:107:90:779,90,0 chrIX 439318 . C T 889 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.022;DP=150;Dels=0.00;FS=58.733;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;MQRankSum=3.675;QD=5.93;ReadPosRankSum=0.156;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:12,138:150:45:922,45,0 chrIX 439323 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=0;QD=7.13;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1095,132,0 chrIX 439331 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=0;QD=7.76;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1143,132,0 chrIX 439339 . T C 864 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.113;DP=137;Dels=0.00;FS=50.948;HaplotypeScore=94.5447;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=0;MQRankSum=3.760;QD=6.31;ReadPosRankSum=-1.299;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:15,122:137:39:897,39,0 chrIX 439381 . T C 168.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.126;DP=53;Dels=0.00;FS=18.086;HaplotypeScore=43.1123;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;MQRankSum=4.348;QD=3.17;ReadPosRankSum=-0.091;SB=2.94 GT:AD:DP:GQ:PL 1/1:14,39:53:21:201,21,0 chrIX 439385 . G A 158.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.190;DP=48;Dels=0.00;FS=6.812;HaplotypeScore=43.1461;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=3.084;QD=3.29;ReadPosRankSum=-2.780;SB=2.94 GT:AD:DP:GQ:PL 1/1:10,38:48:21:191,21,0 chrIX 439417 . G A 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=72;Dels=0.00;FS=50.160;HaplotypeScore=65.3747;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;MQRankSum=3.730;QD=11.49;ReadPosRankSum=-3.300;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:15,57:72:65:860,65,0 chrIX 439449 . C A 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=174;Dels=0.00;FS=7.818;HaplotypeScore=13.7487;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=0;MQRankSum=-0.749;QD=18.81;ReadPosRankSum=-1.548;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,167:174:99:3273,366,0 chrIX 439464 . T A 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.225;DP=239;Dels=0.00;FS=124.867;HaplotypeScore=30.4514;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;MQRankSum=4.314;QD=17.21;ReadPosRankSum=3.553;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:34,205:239:99:4114,465,0 chrIX 439556 . T A 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=223;Dels=0.00;FS=17.856;HaplotypeScore=36.2811;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=9;MQRankSum=2.388;QD=0.95;ReadPosRankSum=-2.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,40:223:99:241,0,2770 chrIX 439574 . A G 1118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=167;Dels=0.00;FS=36.022;HaplotypeScore=49.8022;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=11;MQRankSum=1.547;QD=6.69;ReadPosRankSum=-5.604;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:76,90:167:99:1148,0,937 chrIX 439583 . C G 548.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DP=160;Dels=0.00;FS=0.720;HaplotypeScore=24.1646;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=13;MQRankSum=0.916;QD=3.43;ReadPosRankSum=-3.328;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:101,51:160:99:578,0,1442 chrIX 439584 . A T 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=19.5881;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=13;MQRankSum=1.245;QD=1.59;ReadPosRankSum=-2.480;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:120,35:155:99:277,0,1708 chrIX 439585 . G C 520.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=152;Dels=0.00;FS=6.224;HaplotypeScore=25.1393;MLEAC=1;MLEAF=0.500;MQ=20.19;MQ0=13;MQRankSum=0.881;QD=3.42;ReadPosRankSum=-2.789;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:106,45:152:99:550,0,1491 chrIX 439595 . G A 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;DP=147;Dels=0.00;FS=29.473;HaplotypeScore=63.3662;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=14;MQRankSum=4.863;QD=1.39;ReadPosRankSum=-3.196;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:117,30:147:99:235,0,1642 chrIX 439600 . G A 618.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DP=128;Dels=0.00;FS=227.988;HaplotypeScore=84.2347;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=14;MQRankSum=1.573;QD=4.83;ReadPosRankSum=-4.897;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:77,51:128:99:648,0,995 chrIX 439602 . T G 233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.102;DP=130;Dels=0.00;FS=110.018;HaplotypeScore=84.2347;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=14;MQRankSum=-2.702;QD=1.79;ReadPosRankSum=-2.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,27:130:99:263,0,1163 chrIX 439606 . G A 221.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.109;DP=137;Dels=0.00;FS=49.995;HaplotypeScore=95.6832;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=14;MQRankSum=-4.358;QD=1.61;ReadPosRankSum=0.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,30:137:99:251,0,1410 chrIX 439608 . T C 1456.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.477;DP=137;Dels=0.00;FS=60.936;HaplotypeScore=99.5870;MLEAC=1;MLEAF=0.500;MQ=21.90;MQ0=14;MQRankSum=-2.321;QD=10.63;ReadPosRankSum=2.899;SB=-4.530e+02 GT:AD:DP:GQ:PL 0/1:37,100:137:99:1486,0,190 chrIX 439626 . G A 583.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DP=159;Dels=0.00;FS=202.280;HaplotypeScore=12.3692;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=5;MQRankSum=4.335;QD=3.67;ReadPosRankSum=-0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,53:159:99:613,0,1712 chrIX 439666 . C A 1568.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.963;DP=161;Dels=0.00;FS=94.038;HaplotypeScore=84.0187;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=6;MQRankSum=5.053;QD=9.74;ReadPosRankSum=3.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,99:161:99:1598,0,726 chrIX 439670 . G A 1531.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.718;DP=146;Dels=0.01;FS=91.668;HaplotypeScore=93.4639;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=2;MQRankSum=4.066;QD=10.49;ReadPosRankSum=4.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,95:144:99:1561,0,415 chrIX 439685 . C A 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=157;Dels=0.01;FS=5.536;HaplotypeScore=118.5600;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=1;MQRankSum=0.744;QD=16.10;ReadPosRankSum=-1.301;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:4,151:155:99:2560,282,0 chrIX 439700 . T G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.614;DP=174;Dels=0.00;FS=27.422;HaplotypeScore=163.1372;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=1;MQRankSum=2.560;QD=14.37;ReadPosRankSum=-0.748;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:6,168:174:99:2533,222,0 chrIX 439718 . G A 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=63.6673;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=1;MQRankSum=-1.733;QD=1.00;ReadPosRankSum=-0.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,26:168:99:198,0,1542 chrIX 439719 . G A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.889;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=63.6673;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=1;MQRankSum=1.262;QD=0.12;ReadPosRankSum=-1.531;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:153,15:168:50:50,0,1679 chrIX 439722 . G A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=41.2708;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=1;MQRankSum=0.248;QD=0.32;ReadPosRankSum=-0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,23:167:84:84,0,1523 chrIX 439728 . A G 1907 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=41.2708;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=1;MQRankSum=-0.289;QD=11.42;ReadPosRankSum=2.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:1940,225,0 chrIX 439739 . A G 1722 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=31.4750;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;MQRankSum=-1.644;QD=10.90;ReadPosRankSum=1.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:1755,204,0 chrIX 439742 . T G 228.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=30.6863;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=0;MQRankSum=1.877;QD=1.45;ReadPosRankSum=1.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,36:157:99:258,0,1032 chrIX 439744 . G A 415.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.459;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=29.7285;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=0;MQRankSum=4.862;QD=3.10;ReadPosRankSum=1.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,74:134:99:445,0,551 chrIX 439745 . G A,T 948.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.916;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3292;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.63;MQ0=0;MQRankSum=2.982;QD=7.07;ReadPosRankSum=1.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:8,52,74:134:99:1008,460,438,501,0,491 chrIX 439750 . A T 614 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=96.3471;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=4.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:81:647,81,0 chrIX 439767 . A G 369.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.039;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=33.8160;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=3.738;QD=3.15;ReadPosRankSum=-2.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,50:117:99:399,0,501 chrIX 439771 . G T 743.17 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=38.7491;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=0.230;QD=7.99;ReadPosRankSum=0.689;SB=12.82 GT:AD:DP:GQ:PL 1/1:1,82:93:74:776,74,0 chrIX 439772 . A G 620.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=43.6684;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=2.101;QD=6.67;ReadPosRankSum=1.788;SB=0.043 GT:AD:DP:GQ:PL 0/1:10,82:93:27:650,0,27 chrIX 439776 . A G 293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=49.5617;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=-0.465;QD=3.15;ReadPosRankSum=4.770;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,45:93:99:323,0,393 chrIX 439781 . A T 533 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=36.2516;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=7.51;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:69:566,69,0 chrIX 439783 . G C 218.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.402;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=68.7564;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=0;MQRankSum=0.383;QD=3.07;ReadPosRankSum=4.137;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,41:71:99:248,0,129 chrIX 439784 . G A 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=88.0518;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=-0.038;QD=3.53;ReadPosRankSum=4.101;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:23,47:70:70:277,0,70 chrIX 439786 . T C 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=33.8438;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=0;MQRankSum=-0.156;QD=3.74;ReadPosRankSum=3.526;SB=-6.537e-03 GT:AD:DP:GQ:PL 0/1:19,47:66:51:277,0,51 chrIX 439796 . G T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=81.7498;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=0;MQRankSum=-0.350;QD=1.65;ReadPosRankSum=-0.790;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:28:101,0,28 chrM 13967 . T A 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3080;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-0.179;QD=21.54;ReadPosRankSum=-1.186;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4416,516,0 chrM 13981 . T A 1937 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=24.21;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1970,219,0 chrM 13987 . G T 83.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.33;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:116,15,0 chrM 16426 . C T 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=6.9255;MLEAC=1;MLEAF=0.500;MQ=37.00;MQ0=0;MQRankSum=-0.362;QD=2.83;ReadPosRankSum=2.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,11:18:81:81,0,90 chrM 16430 . T A 384 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.442;DP=51;Dels=0.00;FS=88.040;HaplotypeScore=6.9193;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=-4.468;QD=7.53;ReadPosRankSum=3.976;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:8,43:51:45:417,45,0 chrM 16432 . C A 576 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9193;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=8.11;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:72:609,72,0 chrM 16861 . T C 16593.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=979;DS;Dels=0.00;FS=17.176;HaplotypeScore=73.7538;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.900;QD=16.95;ReadPosRankSum=2.705;SB=-5.274e+03 GT:AD:DP:GQ:PL 1/1:5,961:979:99:16593,2068,0 chrM 17675 . T C 2320 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.53;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2353,285,0 chrM 19234 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.96;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1777,216,0 chrM 19968 . T A 430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.445;QD=17.92;ReadPosRankSum=1.589;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:51:463,51,0 chrM 20195 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.49;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1043,117,0 chrM 20212 . T A 1007 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.56;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1040,111,0 chrM 20294 . G T 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.66;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrM 20372 . T A 268 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:301,33,0 chrM 20407 . T C 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.478;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=40.0004;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.367;QD=20.47;ReadPosRankSum=6.999;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:18,201:219:99:4483,513,0 chrM 20525 . A G 21670.01 filter AC=2;AF=1.00;AN=2;DP=973;Dels=0.00;FS=0.000;HaplotypeScore=93.1088;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.27;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,954:973:99:21670,2633,0 chrM 20934 . T G 12222.01 filter AC=2;AF=1.00;AN=2;DP=604;Dels=0.00;FS=0.000;HaplotypeScore=36.7808;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.24;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,599:604:99:12222,1442,0 chrM 22129 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=21.09;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2564,291,0 chrM 22175 . C A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.22;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3854,435,0 chrM 22176 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.68;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3924,441,0 chrM 22195 . T C 5019.01 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5019,631,0 chrM 22299 . G T 3367.01 filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=17.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3367,372,0 chrM 22327 . T G 452 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.76;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:60:485,60,0 chrM 22592 . C A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrM 22604 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 22732 . A T 161.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:194,21,0 chrM 22740 . C A 175.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:208,21,0 chrM 22959 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrM 23621 . C T 410 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=24.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:51:443,51,0 chrM 24467 . T G 608 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=23.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:78:641,78,0 chrM 24671 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrM 24681 . A T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrM 24821 . A G 872 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.22;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:905,99,0 chrM 24876 . C T 440 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.44;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:54:473,54,0 chrM 25344 . T A 332 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=25.54;SB=-8.000e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:39:365,39,0 chrM 25621 . A C 45.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.49;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:78,9,0 chrM 25673 . G A 126.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=21.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:159,18,0 chrM 26386 . T C 9941.01 filter AC=2;AF=1.00;AN=2;DP=448;Dels=0.00;FS=0.000;HaplotypeScore=21.2807;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.19;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,443:448:99:9941,1101,0 chrM 26539 . C T 586 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:66:619,66,0 chrM 29170 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=18.12;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1718,189,0 chrM 29179 . G T 2010 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=19.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2043,222,0 chrM 29200 . C T 1855 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1888,204,0 chrM 29203 . T C 1742 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1775,213,0 chrM 29206 . G A 1328 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1361,156,0 chrM 29207 . G T 1328 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1361,156,0 chrM 29208 . G C 1303 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1336,156,0 chrM 29209 . A T 1273 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1306,153,0 chrM 29215 . C T 1375 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1408,156,0 chrM 29218 . G A 1312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1345,156,0 chrM 29219 . G C 1302 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1335,156,0 chrM 29220 . C T 1272 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1305,153,0 chrM 29224 . T C 1431 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1464,156,0 chrM 36563 . G A 6829.01 filter AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,301:305:99:6829,736,0 chrM 36588 . A G 9346.01 filter AC=2;AF=1.00;AN=2;DP=466;Dels=0.00;FS=0.000;HaplotypeScore=32.2120;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,457:466:99:9346,1132,0 chrM 36677 . A T 13928.01 filter AC=2;AF=1.00;AN=2;DP=605;Dels=0.00;FS=0.000;HaplotypeScore=2.7658;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.02;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,603:605:99:13928,1593,0 chrM 36689 . G A 14488.01 filter AC=2;AF=1.00;AN=2;DP=644;Dels=0.00;FS=0.000;HaplotypeScore=10.6632;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.50;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,636:644:99:14488,1576,0 chrM 36803 . C T 14308.01 filter AC=2;AF=1.00;AN=2;DP=742;Dels=0.01;FS=0.000;HaplotypeScore=51.4628;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.28;SB=-3.979e+03 GT:AD:DP:GQ:PL 1/1:0,728:734:99:14308,1602,0 chrM 37513 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:79,9,0 chrM 37516 . A T 47.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrM 37636 . T A 55.97 PASS AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=18.66;SB=-2.821e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:88,9,0 chrM 37706 . G A 164.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=23.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:197,21,0 chrM 37743 . A T 109.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=15.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:142,15,0 chrM 37753 . C T 103.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=3.9663;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=20.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:136,15,0 chrM 37760 . A G 76.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=3.9663;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=15.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:109,12,0 chrM 40387 . G A 435 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=22.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:54:468,54,0 chrM 40901 . C T 10717.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;DP=479;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.139;QD=22.37;ReadPosRankSum=-0.184;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,478:479:99:10717,1192,0 chrM 40907 . T A 10259.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=466;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.914;QD=22.02;ReadPosRankSum=1.673;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,465:466:99:10259,1249,0 chrM 41214 . C A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=8.92;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrM 41309 . T A 84.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=1;QD=14.04;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:117,15,0 chrM 41316 . A G 85.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=17.05;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:118,15,0 chrM 41433 . C T 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.05;SB=-2.976e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:123,15,0 chrM 41440 . T A 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.54;SB=-4.876e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:126,15,0 chrM 41441 . A T 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.04;SB=-5.376e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:129,15,0 chrM 41630 . A T 2603 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.33;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2636,303,0 chrM 41832 . G T 1020 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.59;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1053,117,0 chrM 41882 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1148,120,0 chrM 42069 . G A 176.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.74;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:209,24,0 chrM 43513 . T A 9035.01 filter AC=2;AF=1.00;AN=2;DP=434;Dels=0.00;FS=0.000;HaplotypeScore=11.4538;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.82;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,434:434:99:9035,1046,0 chrM 43686 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrM 44456 . T C 149.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.63;SB=-7.781e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:182,21,0 chrM 44467 . G A 54.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.74;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:87,9,0 chrM 44508 . C T 69.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=13.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrM 46887 . C T 1102 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1135,141,0 chrM 58771 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 59511 . T A 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.380;QD=2.32;ReadPosRankSum=1.380;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,4:6:6:45,6,0 chrM 59512 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=0.248;QD=1.98;ReadPosRankSum=2.054;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:3,6:9:6:49,6,0 chrM 59514 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.450;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.150;QD=1.36;ReadPosRankSum=2.950;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,15:19:6:57,6,0 chrM 59794 . A T 11783.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=546;Dels=0.00;FS=9.039;HaplotypeScore=59.5990;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.315;QD=21.58;ReadPosRankSum=1.681;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,544:545:99:11783,1303,0 chrM 62466 . A T 42.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:75,9,0 chrM 62552 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.29;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrM 62563 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:79,9,0 chrM 62589 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:73,9,0 chrM 74415 . G C 16071.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=866;Dels=0.00;FS=0.000;HaplotypeScore=2.8562;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=18.56;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,859:866:99:16071,1938,0 chrM 74416 . C A 17307.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=859;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=20.15;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,859:859:99:17307,1947,0 chrM 74421 . T A 16800.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=866;Dels=0.00;FS=0.000;HaplotypeScore=130.2531;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=19.40;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,866:866:99:16800,1964,0 chrM 74422 . C G 17670.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=866;Dels=0.00;FS=0.000;HaplotypeScore=796.1772;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=20.40;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,866:866:99:17670,2001,0 chrM 74426 . G A 18405.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=948;Dels=0.00;FS=0.000;HaplotypeScore=751.0059;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=19.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,948:948:99:18405,2017,0 chrM 74441 . T A 183.77 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=952;Dels=0.00;FS=0.000;HaplotypeScore=753.9058;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.284;QD=0.19;ReadPosRankSum=1.419;SB=-4.778e+00 GT:AD:DP:GQ:PL 0/1:1,950:952:0:212,0,0 chrM 74447 . A C 13435.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=983;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.217;QD=13.67;ReadPosRankSum=-1.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,982:983:99:13435,1601,0 chrM 74450 . T C 13509.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=991;Dels=0.00;FS=0.000;HaplotypeScore=8.6461;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,991:991:99:13509,1633,0 chrM 74456 . A G 12158.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.967;DP=968;DS;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.073;QD=12.56;ReadPosRankSum=5.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,954:967:99:12158,1471,0 chrM 74462 . G A 12529.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=903;DS;Dels=0.00;FS=0.000;HaplotypeScore=5.7318;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,903:903:99:12529,1372,0 chrM 74465 . C T 10060.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=881;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.7414;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,881:881:99:10060,1266,0 chrM 74468 . A G 10068.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.992;DP=843;DS;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.094;QD=11.94;ReadPosRankSum=2.992;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,840:843:99:10068,1175,0 chrM 74521 . T A 823 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-1.264;QD=11.12;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:856,99,0 chrM 74522 . T A 831 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.468;QD=11.23;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:864,99,0 chrM 74524 . C T 808 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.936;QD=10.92;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:841,99,0 chrM 74527 . A G 806 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.6679;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=1.639;QD=10.89;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:839,99,0 chrM 74536 . A G 227 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=36;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-0.982;QD=6.31;ReadPosRankSum=3.196;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:4,32:36:30:260,30,0 chrM 74545 . T A 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=3.18;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:67,9,0 chrM 74550 . A T 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=-0.751;QD=3.89;ReadPosRankSum=0.751;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:9:67,9,0 chrM 74551 . A T 33.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=4.25;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:66,9,0 chrM 75065 . T A 45.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:78,9,0 chrM 75079 . A T 66.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:99,12,0 chrM 75083 . T G 77.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:110,12,0 chrM 75181 . T A 503 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=17.34;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:536,63,0 chrM 75236 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=7.60;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 chrM 75247 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrM 75248 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.21;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrM 75260 . A G 88.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.02;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:121,15,0 chrM 75262 . T A 92.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.39;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:125,15,0 chrM 75274 . T A 172.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.56;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:205,24,0 chrM 75287 . G A 315 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.75;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:348,36,0 chrM 75289 . A T 296 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.80;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:329,36,0 chrM 75294 . A C 322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=14.64;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:355,39,0 chrM 75307 . A T 379 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=14.58;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:45:412,45,0 chrM 75319 . A T 515 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=17.76;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:60:548,60,0 chrM 75326 . T A 489 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=17.46;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:522,57,0 chrM 75338 . A C 406 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=16.24;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:439,54,0 chrM 75403 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.20;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrM 79281 . T A 19693.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=858;Dels=0.00;FS=0.000;HaplotypeScore=43.6063;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-0.391;QD=22.95;ReadPosRankSum=3.419;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:4,854:858:99:19693,2437,0 chrM 79590 . C T 22364.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=51.6429;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.323;QD=22.36;ReadPosRankSum=-1.222;SB=-1.107e+04 GT:AD:DP:GQ:PL 1/1:1,998:1000:99:22364,2653,0 chrM 79752 . T C 20879.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.688;DP=996;DS;Dels=0.00;FS=23.280;HaplotypeScore=57.6868;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=2.100;QD=20.96;ReadPosRankSum=5.907;SB=-1.035e+04 GT:AD:DP:GQ:PL 1/1:12,979:996:99:20879,2449,0 chrM 79929 . T C 20235.01 filter AC=2;AF=1.00;AN=2;DP=965;DS;Dels=0.00;FS=0.000;HaplotypeScore=67.7007;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.97;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,957:965:99:20235,2406,0 chrM 79999 . G C 9049.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=430;DS;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=21.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,426:430:99:9049,964,0 chrM 80001 . C A 9091.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=420;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=21.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,420:420:99:9091,958,0 chrM 80004 . C T 8502.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=413;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=20.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,413:413:99:8502,954,0 chrM 80007 . C T 8141.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=413;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=19.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,413:413:99:8141,912,0 chrM 80016 . A T 5255.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.343;DP=329;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;MQRankSum=-0.640;QD=15.97;ReadPosRankSum=5.383;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,319:329:99:5255,667,0 chrM 80019 . C T 5734.01 filter AC=2;AF=1.00;AN=2;DP=294;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=19.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:5734,654,0 chrV 531 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.43;MQ0=29;MQRankSum=1.537;QD=0.57;ReadPosRankSum=-0.988;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:24,11:35:6:51,6,0 chrV 533 . C G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=28;MQRankSum=1.537;QD=0.50;ReadPosRankSum=0.406;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:23,11:34:6:48,6,0 chrV 548 . C G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=6.94;MQ0=24;MQRankSum=1.537;QD=0.66;ReadPosRankSum=1.537;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:20,10:30:6:51,6,0 chrV 575 . T G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.88;MQ0=5;QD=1.98;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:3,6:9:6:49,6,0 chrV 716 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.47;MQ0=51;MQRankSum=1.754;QD=0.21;ReadPosRankSum=-1.754;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:54,4:58:6:43,6,0 chrV 729 . T C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.937;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.01;MQ0=41;MQRankSum=1.754;QD=0.81;ReadPosRankSum=-1.754;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:41,7:48:9:71,9,0 chrV 732 . C T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.95;MQ0=42;MQRankSum=1.754;QD=0.82;ReadPosRankSum=-1.754;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:39,10:49:9:72,9,0 chrV 737 . A C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.21;MQ0=38;MQRankSum=1.754;QD=0.89;ReadPosRankSum=0.550;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:32,13:45:9:72,9,0 chrV 1486 . G A 3401.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=395;Dels=0.00;FS=6.653;HaplotypeScore=12.9086;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=105;MQRankSum=2.310;QD=8.61;ReadPosRankSum=-3.803;SB=-1.406e+03 GT:AD:DP:GQ:PL 0/1:143,250:395:99:3401,0,1336 chrV 1491 . A G 1119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DP=407;Dels=0.00;FS=12.889;HaplotypeScore=7.8756;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=104;MQRankSum=-1.951;QD=2.75;ReadPosRankSum=5.379;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/1:266,141:407:99:1149,0,3831 chrV 1544 . T C 931.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.282;DP=378;Dels=0.00;FS=57.093;HaplotypeScore=14.8499;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=35;MQRankSum=-2.398;QD=2.46;ReadPosRankSum=-4.145;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:262,114:378:99:961,0,4726 chrV 1590 . A T 1382 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=12;QD=17.06;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1415,147,0 chrV 1608 . T G 978 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=88;Dels=0.00;FS=3.827;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=16;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.683;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1011,108,0 chrV 1662 . A T 316.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DP=138;Dels=0.00;FS=86.852;HaplotypeScore=4.7836;MLEAC=1;MLEAF=0.500;MQ=12.13;MQ0=57;MQRankSum=-3.972;QD=2.30;ReadPosRankSum=5.526;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:22,116:138:3:346,0,3 chrV 1671 . A C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DP=163;Dels=0.00;FS=98.933;HaplotypeScore=17.3044;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=62;MQRankSum=4.175;QD=0.15;ReadPosRankSum=-4.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,28:163:54:54,0,372 chrV 1680 . T G 546 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=172;Dels=0.00;FS=3.021;HaplotypeScore=14.6218;MLEAC=2;MLEAF=1.00;MQ=13.48;MQ0=63;MQRankSum=-0.079;QD=3.17;ReadPosRankSum=2.405;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:2,170:172:63:579,63,0 chrV 1698 . A G 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;DP=169;Dels=0.00;FS=76.799;HaplotypeScore=10.3576;MLEAC=1;MLEAF=0.500;MQ=15.80;MQ0=59;MQRankSum=-4.330;QD=1.18;ReadPosRankSum=0.434;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:78,90:169:99:229,0,443 chrV 1717 . T C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.196;DP=152;Dels=0.00;FS=23.242;HaplotypeScore=17.9071;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=37;MQRankSum=-2.774;QD=1.11;ReadPosRankSum=-3.052;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:91,60:152:99:199,0,539 chrV 1726 . G A 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;DP=138;Dels=0.00;FS=13.587;HaplotypeScore=77.1873;MLEAC=1;MLEAF=0.500;MQ=19.69;MQ0=21;MQRankSum=-0.438;QD=0.79;ReadPosRankSum=-4.594;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:115,23:138:99:139,0,702 chrV 1730 . T C 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.656;DP=137;Dels=0.00;FS=11.107;HaplotypeScore=54.4510;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=18;MQRankSum=4.303;QD=2.34;ReadPosRankSum=5.923;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:87,50:137:99:351,0,525 chrV 1734 . A G 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DP=142;Dels=0.00;FS=5.636;HaplotypeScore=51.8363;MLEAC=1;MLEAF=0.500;MQ=19.81;MQ0=19;MQRankSum=-0.552;QD=1.67;ReadPosRankSum=0.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,41:142:99:267,0,533 chrV 1738 . A G 893 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.109;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=29.5930;MLEAC=2;MLEAF=1.00;MQ=19.95;MQ0=16;MQRankSum=-0.513;QD=6.71;ReadPosRankSum=4.109;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,127:133:99:926,99,0 chrV 1762 . A G 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.4853;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=11;MQRankSum=1.624;QD=2.36;ReadPosRankSum=-4.350;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,33:94:99:252,0,339 chrV 1769 . T C 681 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.0139;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=7;QD=8.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:81:714,81,0 chrV 1815 . C A 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.863;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=15.5192;MLEAC=2;MLEAF=1.00;MQ=15.68;MQ0=5;MQRankSum=0.755;QD=2.83;ReadPosRankSum=0.383;SB=2.94 GT:AD:DP:GQ:PL 1/1:23,29:52:21:180,21,0 chrV 1819 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=15.5192;MLEAC=1;MLEAF=0.500;MQ=15.60;MQ0=5;MQRankSum=0.681;QD=0.61;ReadPosRankSum=-5.668;SB=-6.656e-03 GT:AD:DP:GQ:PL 0/1:28,23:51:42:61,0,42 chrV 1824 . G C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=12.5449;MLEAC=1;MLEAF=0.500;MQ=14.56;MQ0=6;MQRankSum=0.271;QD=0.25;ReadPosRankSum=-5.268;SB=-6.656e-03 GT:AD:DP:GQ:PL 0/1:29,16:45:41:41,0,42 chrV 1851 . A C 16.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.21;MQ0=32;MQRankSum=1.468;QD=0.23;ReadPosRankSum=4.081;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:44,26:70:20:46,0,20 chrV 1887 . A C 276 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.243;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=10.53;MQ0=86;MQRankSum=2.061;QD=1.66;ReadPosRankSum=0.146;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:17,145:166:39:309,39,0 chrV 1983 . A G 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=123;Dels=0.00;FS=3.861;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=9.52;MQ0=54;MQRankSum=1.746;QD=0.38;ReadPosRankSum=-3.647;SB=1.617e-03 GT:AD:DP:GQ:PL 0/1:100,23:123:29:77,0,29 chrV 4482 . C A 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.937;DP=225;Dels=0.00;FS=10.708;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=9.90;MQ0=184;MQRankSum=1.533;QD=0.55;ReadPosRankSum=-2.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,48:225:99:153,0,536 chrV 4513 . C T 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=160;Dels=0.00;FS=10.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.74;MQ0=119;MQRankSum=1.619;QD=0.78;ReadPosRankSum=-1.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,44:160:99:155,0,535 chrV 4516 . T C 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;DP=156;Dels=0.00;FS=7.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.89;MQ0=116;MQRankSum=2.120;QD=0.74;ReadPosRankSum=1.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,47:156:99:145,0,538 chrV 4725 . A G 121.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=6.10;MQ0=216;MQRankSum=1.858;QD=0.50;ReadPosRankSum=1.858;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,86:241:23:151,0,23 chrV 5226 . T G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=11.66;MQ0=38;MQRankSum=-1.535;QD=0.57;ReadPosRankSum=1.634;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:9,64:73:9:74,9,0 chrV 5378 . G A 227 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.16;MQ0=18;QD=7.09;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:7,25:32:36:260,36,0 chrV 5383 . G C 227 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.70;MQ0=17;QD=6.68;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:6,28:34:36:260,36,0 chrV 5392 . G C 250 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.47;MQ0=12;QD=5.95;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:39:283,39,0 chrV 5406 . G C 474 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=18;QD=7.90;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:63:507,63,0 chrV 6011 . G T 53.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.24;MQ0=91;MQRankSum=0.727;QD=0.57;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:89,6:95:9:86,9,0 chrV 6194 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.84;MQ0=16;MQRankSum=0.067;QD=0.68;ReadPosRankSum=-0.762;SB=-5.437e-03 GT:AD:DP:GQ:PL 0/1:17,8:25:33:47,0,33 chrV 6566 . A C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=1.98;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:57,6,0 chrV 6570 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=1.83;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:55,6,0 chrV 6583 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=1.98;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:53,6,0 chrV 6586 . A G 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=3.20;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:60,6,0 chrV 6589 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=2.64;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrV 6594 . T C 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.35;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:58,6,0 chrV 6600 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrV 6729 . A G 431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=30;Dels=0.00;FS=32.898;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=0.868;QD=14.37;ReadPosRankSum=1.852;SB=-7.802e+01 GT:AD:DP:GQ:PL 0/1:8,22:30:48:461,0,48 chrV 6745 . G C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DP=27;Dels=0.00;FS=22.424;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=0;MQRankSum=0.156;QD=0.56;ReadPosRankSum=-1.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:27:45:45,0,466 chrV 6747 . A G 403.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DP=27;Dels=0.00;FS=22.424;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=0;MQRankSum=0.094;QD=14.93;ReadPosRankSum=1.092;SB=-8.702e+01 GT:AD:DP:GQ:PL 0/1:5,22:27:46:433,0,46 chrV 6758 . G T 355.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;DP=22;Dels=0.00;FS=12.632;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=0.287;QD=16.16;ReadPosRankSum=0.000;SB=-9.247e+01 GT:AD:DP:GQ:PL 0/1:3,19:22:1:384,0,1 chrV 6773 . T G 59.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.70;MQ0=0;QD=11.90;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:92,12,0 chrV 6920 . C T 225 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;QD=5.63;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:258,30,0 chrV 6921 . G A 212 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;QD=5.30;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:245,30,0 chrV 6939 . G A 166.06 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=0;QD=5.93;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:199,21,0 chrV 6996 . A G 50.97 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=4.25;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:83,9,0 chrV 7001 . T C 82.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=-2.775;QD=3.75;ReadPosRankSum=2.679;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:3,19:22:12:115,12,0 chrV 7021 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=11.35;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:521,66,0 chrV 7036 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=13.09;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:910,105,0 chrV 7047 . C T 983 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=12.93;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1016,117,0 chrV 7063 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=12.94;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1327,150,0 chrV 7069 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=13.60;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1488,168,0 chrV 7235 . C A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=27.20;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4189,421,0 chrV 7546 . T C 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=208;Dels=0.00;FS=7.304;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-0.136;QD=24.74;ReadPosRankSum=2.426;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:5145,544,0 chrV 7581 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.27;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4169,436,0 chrV 7660 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.3857;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.38;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4071,429,0 chrV 7846 . A C 1896 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1929,201,0 chrV 7941 . A G 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.249;QD=20.51;ReadPosRankSum=1.692;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1797,189,0 chrV 8258 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.327;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.903;QD=25.20;ReadPosRankSum=1.683;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1822,192,0 chrV 8315 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.82;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2176,219,0 chrV 8344 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.47;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1651,171,0 chrV 8786 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=4.582;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.065;QD=22.06;ReadPosRankSum=1.706;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3011,321,0 chrV 8932 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.45;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2120,222,0 chrV 8946 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.15;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1916,192,0 chrV 9542 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=4.401;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.937;QD=24.53;ReadPosRankSum=1.681;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3336,357,0 chrV 9601 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=7.232;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.210;QD=23.70;ReadPosRankSum=2.341;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3768,394,0 chrV 9746 . G T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.17;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4083,415,0 chrV 9859 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.83;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4597,463,0 chrV 9894 . A G 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=189;Dels=0.00;FS=9.145;HaplotypeScore=16.5720;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.079;QD=25.99;ReadPosRankSum=3.385;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:4,184:189:99:4913,511,0 chrV 10202 . A T 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.182;QD=21.47;ReadPosRankSum=1.667;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2330,249,0 chrV 10621 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.54;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4644,484,0 chrV 10653 . T A 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=169;Dels=0.00;FS=6.859;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.298;QD=25.86;ReadPosRankSum=2.362;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4371,439,0 chrV 10700 . T A 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.618;QD=23.33;ReadPosRankSum=1.641;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3546,375,0 chrV 10731 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0806;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.79;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4099,409,0 chrV 10779 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5934;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.67;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3741,399,0 chrV 10946 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.260;QD=24.72;ReadPosRankSum=1.638;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2752,291,0 chrV 11049 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.62;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3107,327,0 chrV 11100 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.266;QD=23.83;ReadPosRankSum=1.674;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2893,297,0 chrV 11186 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=24.68;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3801,402,0 chrV 11195 . T G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.708;QD=23.53;ReadPosRankSum=1.710;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3741,399,0 chrV 11230 . T G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.351;QD=22.18;ReadPosRankSum=1.707;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3116,330,0 chrV 11351 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=167;Dels=0.00;FS=14.340;HaplotypeScore=5.7660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.125;QD=23.03;ReadPosRankSum=3.407;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3846,408,0 chrV 11370 . C A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9021;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.99;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3934,415,0 chrV 11439 . C G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.92;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3683,393,0 chrV 11496 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.34;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3944,412,0 chrV 11575 . A G 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.750;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=1.210;QD=26.04;ReadPosRankSum=1.711;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4322,445,0 chrV 11741 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.82;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3648,372,0 chrV 11756 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=22.90;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3435,366,0 chrV 11776 . C G 3039 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.82;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3072,327,0 chrV 11785 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.21;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2854,300,0 chrV 11817 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.27;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1915,204,0 chrV 11847 . T G 1792 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.60;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1825,195,0 chrV 12024 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.05;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2224,234,0 chrV 12028 . A C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=4.040;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=0.238;QD=20.08;ReadPosRankSum=1.700;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2242,243,0 chrV 12036 . C A 2332 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=21.39;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2365,237,0 chrV 12071 . A C 2216 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.96;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2249,237,0 chrV 12186 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=27.41;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3646,370,0 chrV 12215 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.21;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3167,327,0 chrV 12258 . A C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.909;QD=23.40;ReadPosRankSum=1.704;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2888,303,0 chrV 12309 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.49;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2899,300,0 chrV 12413 . A T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.4302;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=24.85;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3405,357,0 chrV 12511 . T A 3189 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=22.62;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3222,345,0 chrV 12521 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.944;QD=22.78;ReadPosRankSum=1.708;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3326,343,0 chrV 12532 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=21.38;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3378,340,0 chrV 12571 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=16.06;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2410,243,0 chrV 12600 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=14.49;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2352,255,0 chrV 12612 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=124.0635;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=17.16;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2556,255,0 chrV 12625 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=16.62;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2509,255,0 chrV 12629 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=16.18;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2331,237,0 chrV 12869 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=26.17;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3952,403,0 chrV 12937 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1552;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.53;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4048,418,0 chrV 13004 . A C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=2.978;HaplotypeScore=126.5116;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.768;QD=20.71;ReadPosRankSum=2.401;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3202,342,0 chrV 13167 . T G 4119.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.52;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4119,441,0 chrV 13307 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=195;Dels=0.00;FS=3.078;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.915;QD=22.44;ReadPosRankSum=1.714;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4376,454,0 chrV 13446 . T A 2772 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=19.25;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2805,288,0 chrV 13447 . C T 2644 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=18.62;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2677,288,0 chrV 13449 . G T 2722 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=19.72;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2755,291,0 chrV 13454 . C T 2719 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=17.66;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2752,282,0 chrV 13502 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=3.303;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=-1.322;QD=16.02;ReadPosRankSum=1.712;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2740,288,0 chrV 13812 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=6.933;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.310;QD=24.36;ReadPosRankSum=2.390;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4043,429,0 chrV 14025 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3971,423,0 chrV 14061 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=6.294;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.210;QD=22.68;ReadPosRankSum=2.332;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3312,348,0 chrV 14175 . A T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.19;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3980,400,0 chrV 14408 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=27.46;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3026,307,0 chrV 14438 . T A 2593 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=25.67;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2626,267,0 chrV 14476 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.55;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1950,201,0 chrV 14482 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-1.688;QD=23.24;ReadPosRankSum=1.688;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1869,198,0 chrV 14512 . C G 1452 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.80;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1485,159,0 chrV 14579 . T A 1244 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=23.04;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1277,129,0 chrV 14592 . A G 1069 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.82;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1102,114,0 chrV 14610 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.311;QD=23.59;ReadPosRankSum=1.644;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:953,99,0 chrV 14660 . T A 278 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=21.38;SB=-9.198e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:311,33,0 chrV 14676 . A G 223 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=18.58;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:256,30,0 chrV 15032 . T C 406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;MQRankSum=-0.766;QD=9.44;ReadPosRankSum=1.571;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:45:439,45,0 chrV 15052 . G A 727 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=15.47;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:78:760,78,0 chrV 15174 . C T 84.51 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=71.9341;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=1.02;SB=-8.645e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:12:117,12,0 chrV 15229 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=21.80;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1886,198,0 chrV 15412 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.325;QD=25.11;ReadPosRankSum=0.043;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4018,423,0 chrV 15479 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.126;QD=24.69;ReadPosRankSum=1.675;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4518,478,0 chrV 15608 . C T 5472.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.45;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5472,547,0 chrV 15698 . T A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.42;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4306,436,0 chrV 15826 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.02;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4528,486,0 chrV 15966 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.8828;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4043,412,0 chrV 17311 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.67;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3016,304,0 chrV 17320 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.68;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3159,319,0 chrV 17400 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=10.335;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.077;QD=23.54;ReadPosRankSum=2.935;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3978,418,0 chrV 17824 . A G 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.537;QD=24.34;ReadPosRankSum=1.683;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1761,186,0 chrV 17871 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.57;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1360,138,0 chrV 17918 . T A 359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=22;Dels=0.00;FS=5.643;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.261;QD=16.32;ReadPosRankSum=1.419;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:42:392,42,0 chrV 18031 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=23.61;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1119,111,0 chrV 18035 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=22.64;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1029,105,0 chrV 18138 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=20.59;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1824,195,0 chrV 18162 . T A 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=2.662;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;MQRankSum=-1.154;QD=17.12;ReadPosRankSum=2.398;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1659,165,0 chrV 18174 . A T 1412 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=14.41;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1445,156,0 chrV 18178 . A C 1348 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=13.48;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1381,147,0 chrV 18182 . T C 1333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=107;Dels=0.00;FS=2.602;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;MQRankSum=-2.689;QD=12.46;ReadPosRankSum=2.746;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1366,150,0 chrV 18193 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=14.69;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1517,162,0 chrV 18224 . C T 1630 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=15.67;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1663,171,0 chrV 18229 . C T 1777 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=15.32;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1810,186,0 chrV 18232 . G A 1794 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=15.60;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1827,189,0 chrV 18285 . A T 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=7.021;HaplotypeScore=11.8218;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.662;QD=22.16;ReadPosRankSum=2.381;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3202,327,0 chrV 18609 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3128,327,0 chrV 18949 . T C 643 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.48;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:676,69,0 chrV 18960 . T C 239 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.24;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:272,30,0 chrV 18961 . T G 232 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.00;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:265,30,0 chrV 18962 . T C 238 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.21;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:271,30,0 chrV 18963 . G A 238 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.21;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:271,30,0 chrV 18965 . G T 250 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.62;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:283,30,0 chrV 18979 . G A 160.06 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=3.48;SB=-3.561e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:21:193,21,0 chrV 18986 . A C 137.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.586;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-0.226;QD=2.98;ReadPosRankSum=1.657;SB=-4.061e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:18:170,18,0 chrV 18988 . C T 256.01 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=4.92;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:27:289,27,0 chrV 18994 . G A 542 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=8.34;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:57:575,57,0 chrV 19144 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9923;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=23.32;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2971,315,0 chrV 19236 . C A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.49;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4334,442,0 chrV 19307 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.81;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3090,321,0 chrV 19431 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=58.1221;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.64;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1595,162,0 chrV 19504 . T C 496 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=18.37;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:54:529,54,0 chrV 19513 . C T 266 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=12.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:22:30:299,30,0 chrV 19517 . A T 191.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=12.74;SB=-3.004e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:224,24,0 chrV 19588 . T A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=2;MQRankSum=1.516;QD=0.57;ReadPosRankSum=-2.971;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,4:20:41:41,0,133 chrV 19816 . G A 717 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=46;QD=7.39;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:81:750,81,0 chrV 19915 . C T 1148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DP=361;Dels=0.00;FS=261.090;HaplotypeScore=15.9935;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=8;MQRankSum=0.395;QD=3.18;ReadPosRankSum=1.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:274,87:361:99:1178,0,5982 chrV 20557 . C T 1467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.350;DP=493;Dels=0.00;FS=15.166;HaplotypeScore=12.1337;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=55;MQRankSum=-0.552;QD=2.98;ReadPosRankSum=-0.143;SB=-8.460e+02 GT:AD:DP:GQ:PL 0/1:266,224:493:99:1497,0,2485 chrV 20575 . G A 1071.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.797;DP=441;Dels=0.00;FS=19.883;HaplotypeScore=23.6057;MLEAC=1;MLEAF=0.500;MQ=16.99;MQ0=79;MQRankSum=-1.337;QD=2.43;ReadPosRankSum=1.421;SB=-5.820e+02 GT:AD:DP:GQ:PL 0/1:244,197:441:99:1101,0,1954 chrV 20912 . C G 310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.257;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=15.80;MQ0=48;MQRankSum=0.041;QD=2.17;ReadPosRankSum=-0.831;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,72:143:99:340,0,445 chrV 21110 . A T 197.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=17.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:24:230,24,0 chrV 21226 . T G 334 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.24;MQ0=27;QD=7.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:39:367,39,0 chrV 21381 . A G 1971 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=24;QD=18.08;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2004,207,0 chrV 21406 . C T 2258 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=39;QD=17.37;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2291,237,0 chrV 21440 . T G 1791 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=37;MQRankSum=0.023;QD=15.99;ReadPosRankSum=1.640;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1824,192,0 chrV 21454 . T C 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=95;Dels=0.00;FS=4.161;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.02;MQ0=34;MQRankSum=-3.901;QD=1.62;ReadPosRankSum=1.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,33:95:99:184,0,1052 chrV 21521 . C A 1844 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=21;QD=20.04;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1877,189,0 chrV 21547 . T C 1529 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=23;QD=17.78;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1562,162,0 chrV 21548 . T C 1537 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=23;QD=17.87;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1570,162,0 chrV 21608 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;DP=108;Dels=0.00;FS=29.207;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=46.84;MQ0=12;MQRankSum=-3.613;QD=0.10;ReadPosRankSum=3.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,24:108:41:41,0,1626 chrV 21741 . A T 1700 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=19;QD=17.71;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1733,180,0 chrV 21762 . C A 1106 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=12;QD=16.76;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:8,58:66:99:1139,120,0 chrV 21768 . A G 1119 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=9;QD=17.48;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:5,59:64:99:1152,120,0 chrV 21771 . A G 1193 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=9;QD=18.35;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:5,60:65:99:1226,129,0 chrV 21951 . A G 1084 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=82;Dels=0.00;FS=12.816;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=5;MQRankSum=-1.585;QD=13.22;ReadPosRankSum=2.226;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1117,123,0 chrV 21954 . A T 868 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=74;Dels=0.00;FS=6.084;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=5;MQRankSum=-1.531;QD=11.73;ReadPosRankSum=1.582;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:96:901,96,0 chrV 21990 . A G 112.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=8;QD=2.74;SB=-2.293e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:145,15,0 chrV 21993 . A T 110.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=10;QD=2.69;SB=-2.633e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:143,15,0 chrV 21999 . G A 281 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=10;QD=5.85;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:33:314,33,0 chrV 22026 . C T 720 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=10;QD=7.91;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:87:753,87,0 chrV 22188 . A C 104.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=52;Dels=0.00;FS=3.087;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=5;MQRankSum=-2.082;QD=2.01;ReadPosRankSum=2.345;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,50:52:15:137,15,0 chrV 22191 . G A 102.26 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.34;MQ0=4;QD=2.01;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:15:135,15,0 chrV 22200 . A G 106.26 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.74;MQ0=5;QD=1.83;SB=-5.576e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:15:139,15,0 chrV 22302 . T G 409 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DP=66;Dels=0.00;FS=6.198;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=41;MQRankSum=-0.901;QD=6.20;ReadPosRankSum=1.595;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:51:442,51,0 chrV 22305 . A G 354 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=42;QD=5.45;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:45:387,45,0 chrV 22341 . C T 616 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=29;QD=9.19;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:66:649,66,0 chrV 22464 . C A 199.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=14;QD=7.65;SB=-1.149e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:232,27,0 chrV 22506 . G A 813 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=26;QD=13.33;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:846,90,0 chrV 22542 . G C 972 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=26;QD=14.09;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1005,111,0 chrV 22614 . C G 161.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=6;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:21:194,21,0 chrV 22641 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.90;MQ0=4;QD=3.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:56,6,0 chrV 22644 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.90;MQ0=4;QD=2.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:50,6,0 chrV 22665 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.68;MQ0=9;QD=1.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:6:56,6,0 chrV 22692 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.88;MQ0=11;QD=1.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:6:52,6,0 chrV 22812 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.04;MQ0=24;QD=1.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:6:58,6,0 chrV 22863 . G A 884 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=22;QD=16.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:93:917,93,0 chrV 22917 . G A 1161 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=18;QD=15.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,65:73:99:1194,123,0 chrV 23192 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.54;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2601,273,0 chrV 23309 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=132;Dels=0.00;FS=7.651;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.406;QD=22.69;ReadPosRankSum=2.412;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3028,312,0 chrV 23494 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.26;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3815,388,0 chrV 23825 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=14.33;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2355,249,0 chrV 23976 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=24.65;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3894,400,0 chrV 24002 . G T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=24.10;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3615,364,0 chrV 24025 . G C 3393.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.03;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3393,349,0 chrV 24122 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=25.14;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3520,358,0 chrV 24163 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=24.65;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3213,328,0 chrV 24165 . C G 3095 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=24.56;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3128,322,0 chrV 24232 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=24.94;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2976,301,0 chrV 24259 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=24.89;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2771,280,0 chrV 24354 . A G 2400 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=21.62;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2433,264,0 chrV 24380 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=21.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2018,216,0 chrV 24388 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-0.784;QD=20.29;ReadPosRankSum=1.696;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1961,213,0 chrV 24392 . A T 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=1.218;QD=19.76;ReadPosRankSum=1.629;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2029,225,0 chrV 24419 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=20.47;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2039,210,0 chrV 24446 . T C 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-1.485;QD=22.27;ReadPosRankSum=1.701;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2527,264,0 chrV 24575 . T C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=2.855;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-1.134;QD=20.71;ReadPosRankSum=2.373;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2725,297,0 chrV 24581 . C A 2421 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.34;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2454,270,0 chrV 24596 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=18.98;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2500,267,0 chrV 24650 . T G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.58;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3625,376,0 chrV 24661 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.67;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3597,378,0 chrV 24670 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.72;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3540,372,0 chrV 24749 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.43;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3330,354,0 chrV 24754 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=167;Dels=0.00;FS=9.511;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.090;QD=19.83;ReadPosRankSum=2.958;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3312,348,0 chrV 24870 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=24.83;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4097,418,0 chrV 24902 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=24.77;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4211,427,0 chrV 24966 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=25.70;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4266,427,0 chrV 25051 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.20;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3043,330,0 chrV 25095 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1078;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=19.06;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2778,291,0 chrV 25103 . A T 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.726;QD=18.26;ReadPosRankSum=1.709;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2735,276,0 chrV 25106 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.929;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-1.040;QD=17.49;ReadPosRankSum=2.415;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2534,267,0 chrV 25120 . T A 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.629;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-1.223;QD=16.95;ReadPosRankSum=1.708;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2457,261,0 chrV 25188 . G T 2539 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.64;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2572,273,0 chrV 25194 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.114;QD=19.60;ReadPosRankSum=1.705;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2561,270,0 chrV 25237 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.37;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2404,249,0 chrV 25332 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=21.53;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1691,180,0 chrV 25369 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.17;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1557,159,0 chrV 25407 . G A 116.26 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=39.2644;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=2.37;SB=-2.123e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:15:149,15,0 chrV 25571 . A T 2681 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.29;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2714,279,0 chrV 25685 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.63;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3756,408,0 chrV 25874 . A C 4525.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.5581;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.59;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4525,481,0 chrV 25914 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.94;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4262,448,0 chrV 26265 . A C 5918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=5.151;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.515;QD=24.25;ReadPosRankSum=1.703;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,238:244:99:5918,634,0 chrV 26313 . G T 5486.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.78;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5486,574,0 chrV 26322 . C G 5452.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=14.6502;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.90;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,269:274:99:5452,577,0 chrV 26413 . A G 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=262;Dels=0.00;FS=2.910;HaplotypeScore=11.9830;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.522;QD=23.61;ReadPosRankSum=2.403;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:6186,637,0 chrV 26594 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.52;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5411,541,0 chrV 26678 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.45;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3862,391,0 chrV 26685 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.75;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3942,406,0 chrV 27044 . C T 5494.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.31;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,220:226:99:5494,574,0 chrV 27119 . A G 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.793;QD=22.78;ReadPosRankSum=2.409;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:5580,580,0 chrV 27260 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.9960;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=23.21;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4016,412,0 chrV 27272 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.37;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3489,366,0 chrV 27604 . C T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5725,580,0 chrV 27636 . C A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.8499;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.59;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4913,496,0 chrV 27912 . T C 6307.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.61;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:6307,658,0 chrV 27980 . A T 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=257;Dels=0.00;FS=2.572;HaplotypeScore=20.4350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.738;QD=20.19;ReadPosRankSum=2.957;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:5188,517,0 chrV 28167 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.6536;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3730,388,0 chrV 28312 . A G 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.00;FS=7.085;HaplotypeScore=9.8742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.427;QD=25.81;ReadPosRankSum=2.397;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4826,493,0 chrV 28427 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.88;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4131,436,0 chrV 28622 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.23;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:4216,450,0 chrV 28649 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.22;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3802,402,0 chrV 28694 . T G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.451;QD=22.03;ReadPosRankSum=1.624;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3547,375,0 chrV 28988 . C T 4716.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.95;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4716,472,0 chrV 29072 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.69;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4016,412,0 chrV 29269 . C G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=3.612;HaplotypeScore=5.0810;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.589;QD=25.25;ReadPosRankSum=1.426;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4293,425,0 chrV 29294 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.306;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.094;QD=24.35;ReadPosRankSum=1.664;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3726,385,0 chrV 29909 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.94;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3683,376,0 chrV 29962 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.59;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4453,477,0 chrV 30054 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=6.525;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.589;QD=24.13;ReadPosRankSum=2.421;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4126,433,0 chrV 30664 . G A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4603,492,0 chrV 31093 . A C 3137 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3304;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.24;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3170,330,0 chrV 31263 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=24.20;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2187,222,0 chrV 31273 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.53;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2038,207,0 chrV 31626 . G T 2066 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.51;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2099,222,0 chrV 31663 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.02;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2411,246,0 chrV 31867 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=158;Dels=0.00;FS=6.096;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.389;QD=24.81;ReadPosRankSum=2.892;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3920,414,0 chrV 33002 . A C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=163;Dels=0.00;FS=4.033;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.304;QD=24.42;ReadPosRankSum=1.240;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3980,399,0 chrV 33344 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.47;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3018,321,0 chrV 33551 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=23.90;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1993,210,0 chrV 33782 . C A 1923 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.99;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1956,195,0 chrV 33814 . A G 2738 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=26.33;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2771,291,0 chrV 34040 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.50;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2507,267,0 chrV 34050 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=24.94;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2427,243,0 chrV 34052 . T A 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.201;QD=24.42;ReadPosRankSum=1.659;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2353,237,0 chrV 34127 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.92;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2780,285,0 chrV 34350 . T C 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=106;Dels=0.02;FS=7.445;HaplotypeScore=20.7416;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.896;QD=21.37;ReadPosRankSum=2.402;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2298,243,0 chrV 34493 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3507;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.34;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2297,231,0 chrV 34622 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2183,228,0 chrV 34811 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2982,304,0 chrV 35048 . C T 4977.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.89;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4977,508,0 chrV 35588 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.475;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.402;QD=23.80;ReadPosRankSum=1.657;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3285,337,0 chrV 35699 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3379,340,0 chrV 35917 . C G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3294,348,0 chrV 36053 . A C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.47;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3621,381,0 chrV 36245 . T A 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.344;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.382;QD=20.70;ReadPosRankSum=1.693;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1875,198,0 chrV 36420 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2104,222,0 chrV 36559 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0769;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.60;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3865,394,0 chrV 36687 . G A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4792,484,0 chrV 37036 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.42;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3125,313,0 chrV 37221 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.22;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1833,195,0 chrV 37407 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.199;QD=25.33;ReadPosRankSum=1.619;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1578,165,0 chrV 37441 . A T 1665 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.75;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1698,174,0 chrV 37539 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1701,177,0 chrV 37747 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1844,189,0 chrV 38676 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.190;QD=24.28;ReadPosRankSum=1.713;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4346,445,0 chrV 38716 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=19.2175;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.27;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3956,397,0 chrV 38956 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.61;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3208,342,0 chrV 39238 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=15.81;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1819,180,0 chrV 39304 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.46;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3302,331,0 chrV 39493 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.25;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2361,243,0 chrV 39580 . C A 1719 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.21;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1752,177,0 chrV 39651 . T A 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=2.937;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.858;QD=25.20;ReadPosRankSum=2.253;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1923,192,0 chrV 39664 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.51;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1889,189,0 chrV 40307 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=157;Dels=0.00;FS=12.808;HaplotypeScore=9.5599;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.490;QD=25.92;ReadPosRankSum=2.916;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:4069,427,0 chrV 40520 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.0052;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.40;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5475,583,0 chrV 40622 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.345;QD=18.29;ReadPosRankSum=1.662;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3621,387,0 chrV 40623 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=2.964;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.709;QD=17.44;ReadPosRankSum=2.425;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:3505,390,0 chrV 40835 . A G 6863.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.34;SB=-3.219e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6863,739,0 chrV 40988 . A G 6263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.8368;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.125;QD=22.53;ReadPosRankSum=2.361;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:6263,655,0 chrV 41075 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.39;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3615,367,0 chrV 41138 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3915;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.92;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4171,421,0 chrV 41273 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.44;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2977,301,0 chrV 41275 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=2.967;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.092;QD=18.85;ReadPosRankSum=2.416;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2823,294,0 chrV 41357 . G A 4969.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.79;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4969,528,0 chrV 41366 . G A 5182.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.4232;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.15;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5182,526,0 chrV 41432 . C G 4623.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.70;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4623,490,0 chrV 41545 . T C 6552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=295;Dels=0.00;FS=5.937;HaplotypeScore=22.0896;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.452;QD=22.21;ReadPosRankSum=2.859;SB=-3.751e+03 GT:AD:DP:GQ:PL 1/1:3,288:295:99:6552,676,0 chrV 41687 . A C 6859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=11.4279;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.683;QD=24.15;ReadPosRankSum=1.720;SB=-3.454e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6859,703,0 chrV 41711 . C G 6320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=9.4639;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.670;QD=22.41;ReadPosRankSum=1.583;SB=-3.490e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:6320,664,0 chrV 42051 . C A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3599,361,0 chrV 42238 . A T 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.4294;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.819;QD=21.13;ReadPosRankSum=1.701;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2378,258,0 chrV 42418 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.35;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3065,330,0 chrV 42780 . C G 5780.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.2002;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.79;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5780,592,0 chrV 43070 . G A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.30;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4684,498,0 chrV 43074 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.59;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4608,484,0 chrV 43494 . A G 6629.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=22.6529;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.40;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6629,700,0 chrV 43578 . A G 7432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=303;Dels=0.00;FS=10.896;HaplotypeScore=28.6843;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.890;QD=24.53;ReadPosRankSum=2.937;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:3,298:303:99:7432,772,0 chrV 43817 . C T 7252.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=21.3520;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.39;SB=-3.342e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:7252,772,0 chrV 43959 . G A 5498.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.90;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5498,541,0 chrV 44019 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2785;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.81;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4548,486,0 chrV 44304 . T C 5431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.016;QD=26.11;ReadPosRankSum=1.699;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5431,571,0 chrV 44529 . A G 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=219;Dels=0.00;FS=2.978;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.298;QD=22.53;ReadPosRankSum=2.404;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4935,529,0 chrV 44601 . T G 4514.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.80;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4514,475,0 chrV 44613 . T C 4632.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.16;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4632,493,0 chrV 44641 . A G 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.7363;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.252;QD=21.63;ReadPosRankSum=2.365;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4435,446,0 chrV 44763 . A G 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=3.023;HaplotypeScore=9.9383;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.373;QD=23.87;ReadPosRankSum=2.376;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4821,502,0 chrV 44860 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.235;QD=23.34;ReadPosRankSum=1.606;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4481,475,0 chrV 44999 . C G 2600 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.64;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2633,279,0 chrV 45023 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.06;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2795,285,0 chrV 45606 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.79;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3149,319,0 chrV 45702 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.470;QD=24.42;ReadPosRankSum=1.703;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2964,309,0 chrV 45816 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.74;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3095,330,0 chrV 45963 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=146;Dels=0.00;FS=5.990;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.607;QD=23.40;ReadPosRankSum=2.952;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3417,360,0 chrV 46022 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=22.58;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3239,336,0 chrV 46030 . C G 2901 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.15;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2934,312,0 chrV 46084 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7146;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.02;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2156,231,0 chrV 46142 . T C 2442 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.05;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2475,255,0 chrV 46329 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.25;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2570,267,0 chrV 46348 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.79;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2081,213,0 chrV 46749 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=118.7042;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.70;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2807,297,0 chrV 46840 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.02;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.94;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3476,346,0 chrV 46866 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.81;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2884,300,0 chrV 46910 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.332;QD=23.21;ReadPosRankSum=1.679;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3074,321,0 chrV 46984 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.58;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3794,397,0 chrV 47089 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=2.586;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.319;QD=19.30;ReadPosRankSum=2.356;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3101,324,0 chrV 47091 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.81;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3182,333,0 chrV 47165 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=185;Dels=0.00;FS=6.089;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=2.445;QD=20.56;ReadPosRankSum=2.918;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:3804,402,0 chrV 47764 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.9026;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.702;QD=24.44;ReadPosRankSum=1.710;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3911,414,0 chrV 48016 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6090;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.09;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4516,469,0 chrV 48081 . C G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.77;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4329,457,0 chrV 48099 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=218;Dels=0.00;FS=6.330;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.273;QD=17.86;ReadPosRankSum=2.427;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:3894,406,0 chrV 48112 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.07;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3776,382,0 chrV 48124 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=199;Dels=0.00;FS=3.010;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.169;QD=17.60;ReadPosRankSum=2.399;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:3502,361,0 chrV 48175 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.07;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3995,400,0 chrV 48289 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=2.467;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.325;QD=21.70;ReadPosRankSum=2.927;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3298,345,0 chrV 48384 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=134;Dels=0.00;FS=6.121;HaplotypeScore=11.9288;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.680;QD=22.59;ReadPosRankSum=2.412;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:3060,318,0 chrV 48555 . T C 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=184;Dels=0.00;FS=2.554;HaplotypeScore=8.6460;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.585;QD=24.91;ReadPosRankSum=2.831;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4584,484,0 chrV 48609 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.08;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4287,453,0 chrV 48636 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.9924;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.34;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4089,406,0 chrV 48663 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.53;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3742,379,0 chrV 48745 . A G 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3604;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.184;QD=23.53;ReadPosRankSum=2.422;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4236,445,0 chrV 48831 . A G 2910 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=23.10;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2943,318,0 chrV 48849 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=21.20;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2832,309,0 chrV 48856 . A G 2806 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.26;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2839,297,0 chrV 48897 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=3.043;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.584;QD=20.07;ReadPosRankSum=2.391;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2542,273,0 chrV 48972 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.69;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3777,379,0 chrV 49043 . T G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.371;QD=25.39;ReadPosRankSum=1.711;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4265,448,0 chrV 49056 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=7.767;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.095;QD=22.83;ReadPosRankSum=2.362;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3836,411,0 chrV 49185 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.7524;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.81;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4813,484,0 chrV 49341 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6553;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.89;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2753,282,0 chrV 49397 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=5.336;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.211;QD=18.04;ReadPosRankSum=1.690;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2992,312,0 chrV 49411 . T G 2703 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.14;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2736,288,0 chrV 49751 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2768,279,0 chrV 49908 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.1015;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.610;QD=23.92;ReadPosRankSum=1.708;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3397,357,0 chrV 50125 . A T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.39;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4265,430,0 chrV 50151 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.835;QD=22.98;ReadPosRankSum=1.691;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3906,420,0 chrV 50218 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3253,342,0 chrV 50818 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.15;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2690,276,0 chrV 50835 . C T 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5249;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.521;QD=23.38;ReadPosRankSum=0.075;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2722,285,0 chrV 50918 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2431,264,0 chrV 51087 . T C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.284;QD=24.18;ReadPosRankSum=2.396;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2233,234,0 chrV 51366 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2916,306,0 chrV 51423 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7692;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.70;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3508,355,0 chrV 51780 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=10.4553;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.845;QD=23.70;ReadPosRankSum=2.381;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3437,366,0 chrV 51822 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3846,388,0 chrV 51919 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.82;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3772,402,0 chrV 51959 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.06;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4060,432,0 chrV 52028 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.5045;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.57;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4029,409,0 chrV 52092 . G T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7584;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.49;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4333,445,0 chrV 52448 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.202;DP=78;Dels=0.00;FS=3.550;HaplotypeScore=72.6967;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.192;QD=0.23;ReadPosRankSum=1.507;SB=-8.418e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:6:49,6,0 chrV 53237 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.15;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2556,253,0 chrV 53456 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.92;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3493,355,0 chrV 53463 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8564;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.54;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3178,328,0 chrV 53537 . G T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4187,415,0 chrV 53618 . T G 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=223;Dels=0.00;FS=6.364;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.731;QD=23.87;ReadPosRankSum=2.371;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:2,218:223:99:5324,556,0 chrV 53704 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.40;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4301,451,0 chrV 54500 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.613;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.128;QD=24.00;ReadPosRankSum=1.700;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2649,279,0 chrV 55841 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.74;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4298,433,0 chrV 56129 . A C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=23.51;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3926,415,0 chrV 56149 . A C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.663;QD=23.01;ReadPosRankSum=1.692;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4026,424,0 chrV 56166 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.60;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3563,355,0 chrV 56171 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=2.995;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.638;QD=19.11;ReadPosRankSum=2.381;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3439,366,0 chrV 56315 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.626;QD=26.32;ReadPosRankSum=1.711;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4369,460,0 chrV 56577 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4504,457,0 chrV 57203 . C T 4755.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.56;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4755,481,0 chrV 57448 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=180;Dels=0.00;FS=1.970;HaplotypeScore=3.7049;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.786;QD=20.03;ReadPosRankSum=3.274;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:5,175:180:99:3605,384,0 chrV 57449 . T A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=2.9162;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.93;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3608,387,0 chrV 57614 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6071;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.72;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3986,400,0 chrV 57806 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.225;QD=23.52;ReadPosRankSum=2.385;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4516,475,0 chrV 57836 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2926;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.86;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3164,342,0 chrV 57855 . T A 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=6.939;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.288;QD=19.45;ReadPosRankSum=2.365;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3404,369,0 chrV 57900 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.149;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.011;QD=21.44;ReadPosRankSum=1.710;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3431,366,0 chrV 58022 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.42;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4030,424,0 chrV 58103 . C A 2714 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.37;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2747,279,0 chrV 58114 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.370;QD=19.18;ReadPosRankSum=1.703;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2296,240,0 chrV 58183 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.347;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.344;QD=22.61;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3063,327,0 chrV 58245 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=119;Dels=0.00;FS=2.806;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.469;QD=23.45;ReadPosRankSum=2.366;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2823,294,0 chrV 59261 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.38;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1141,120,0 chrV 59426 . T C 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.985;QD=19.75;ReadPosRankSum=1.664;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1040,108,0 chrV 59461 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.81;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1333,141,0 chrV 59504 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.24;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:99:930,99,0 chrV 59555 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.95;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1590,168,0 chrV 60057 . A G 5944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.718;QD=24.36;ReadPosRankSum=1.718;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5944,631,0 chrV 60147 . G C 4451.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.94;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,188:194:99:4451,477,0 chrV 60162 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.85;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4615,504,0 chrV 61028 . T C 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=113;Dels=0.00;FS=8.098;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.563;QD=21.38;ReadPosRankSum=1.829;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2449,264,0 chrV 62154 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.75;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:946,99,0 chrV 63695 . T C 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.474;QD=24.41;ReadPosRankSum=1.695;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4590,487,0 chrV 63847 . A C 3911.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=196;Dels=0.00;FS=3.021;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=6;MQRankSum=0.738;QD=19.95;ReadPosRankSum=2.423;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:3911,409,0 chrV 64150 . A C 246.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.184;DP=121;Dels=0.00;FS=1.469;HaplotypeScore=141.4681;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=2;MQRankSum=-0.051;QD=2.03;ReadPosRankSum=-3.091;SB=-3.861e+02 GT:AD:DP:GQ:PL 1/1:72,49:121:18:279,18,0 chrV 64152 . C A 226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.439;DP=117;Dels=0.00;FS=3.434;HaplotypeScore=141.4681;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=2;MQRankSum=-0.885;QD=1.93;ReadPosRankSum=-4.605;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:70,47:117:33:259,33,0 chrV 64237 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=1;QD=23.15;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2603,270,0 chrV 64421 . A T 4822.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.98;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4822,511,0 chrV 64504 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4398,439,0 chrV 68702 . C G 6143.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=21.3236;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.10;SB=-3.627e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:6143,672,0 chrV 69871 . C T 5098.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=19.6972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.12;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5098,517,0 chrV 72069 . A G 4439.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.37;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4439,463,0 chrV 72582 . G A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.8966;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.31;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4973,496,0 chrV 72694 . T G 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=2.883;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=2.165;QD=23.28;ReadPosRankSum=2.415;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:5074,538,0 chrV 72800 . C G 6246.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.30;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:6246,652,0 chrV 72942 . C T 7725.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=17.3238;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.22;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,317:319:99:7725,820,0 chrV 72990 . T G 6908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=308;Dels=0.00;FS=3.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.428;QD=22.43;ReadPosRankSum=2.378;SB=-3.980e+03 GT:AD:DP:GQ:PL 1/1:2,305:308:99:6908,721,0 chrV 73003 . T A 6730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=306;Dels=0.00;FS=3.018;HaplotypeScore=9.2744;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.127;QD=21.99;ReadPosRankSum=2.401;SB=-4.205e+03 GT:AD:DP:GQ:PL 1/1:2,304:306:99:6730,670,0 chrV 73131 . G A 6609.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.0322;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.30;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6609,673,0 chrV 73422 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.01;FS=3.699;HaplotypeScore=7.5080;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.162;QD=22.33;ReadPosRankSum=1.594;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1730,186,0 chrV 73592 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.65;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1822,183,0 chrV 73600 . G C 1740 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.48;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1773,186,0 chrV 73670 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.96;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2421,240,0 chrV 73686 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3023;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.83;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2500,264,0 chrV 74271 . T G 4795.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4795,508,0 chrV 75225 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.564;QD=25.45;ReadPosRankSum=1.712;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4480,469,0 chrV 75516 . A C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.261;QD=22.29;ReadPosRankSum=1.699;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2418,255,0 chrV 75539 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4195;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.78;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2443,264,0 chrV 75589 . G A 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.471;QD=21.43;ReadPosRankSum=-0.458;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2326,214,0 chrV 75594 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.74;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2316,231,0 chrV 75731 . T G 1418 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.85;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1451,150,0 chrV 75745 . A G 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.577;QD=21.13;ReadPosRankSum=1.677;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1364,141,0 chrV 75860 . A C 1936 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.47;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1969,207,0 chrV 76029 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.740;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.124;QD=26.39;ReadPosRankSum=1.707;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3694,382,0 chrV 76040 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.68;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3544,358,0 chrV 76078 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.76;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2956,292,0 chrV 76107 . G C 2767 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.50;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2800,294,0 chrV 76232 . C A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.8868;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.43;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3396,357,0 chrV 76273 . A C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.790;QD=24.32;ReadPosRankSum=1.671;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2806,297,0 chrV 76357 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=6.603;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.025;QD=24.99;ReadPosRankSum=2.416;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3673,390,0 chrV 76382 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=143;Dels=0.00;FS=6.559;HaplotypeScore=6.2431;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.424;QD=24.80;ReadPosRankSum=1.948;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3546,378,0 chrV 76472 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.515;DP=142;Dels=0.00;FS=11.340;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.078;QD=22.61;ReadPosRankSum=3.762;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:5,135:142:99:3243,348,0 chrV 76636 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.34;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3173,316,0 chrV 76912 . A G 4821.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.11;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4821,505,0 chrV 77032 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=181;Dels=0.00;FS=2.579;HaplotypeScore=13.7989;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.050;QD=24.13;ReadPosRankSum=2.928;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4368,468,0 chrV 77098 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=4.627;HaplotypeScore=9.5417;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.515;QD=22.06;ReadPosRankSum=1.709;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3287,357,0 chrV 77310 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.49;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3339,331,0 chrV 77423 . G T 3097 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.11;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3130,316,0 chrV 77444 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.147;QD=22.79;ReadPosRankSum=1.710;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3533,364,0 chrV 77500 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.92;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3233,339,0 chrV 77558 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3393,343,0 chrV 77918 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1968,207,0 chrV 78595 . C G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.23;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:3783,405,0 chrV 78787 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.3063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4323,442,0 chrV 78833 . A G 4993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=6.760;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.200;QD=23.12;ReadPosRankSum=2.427;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4993,552,0 chrV 78893 . T G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=215;Dels=0.00;FS=11.225;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.883;QD=21.35;ReadPosRankSum=2.939;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4591,484,0 chrV 78895 . C G 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-0.696;QD=21.21;ReadPosRankSum=1.603;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4582,484,0 chrV 79059 . T C 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3987;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.941;QD=24.25;ReadPosRankSum=-0.910;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5384,543,0 chrV 79285 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=258;Dels=0.00;FS=3.236;HaplotypeScore=14.2013;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.166;QD=18.62;ReadPosRankSum=1.692;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:4803,502,0 chrV 79309 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.49;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4408,439,0 chrV 79396 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.95;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3665,396,0 chrV 79416 . G A 4446.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.43;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4446,448,0 chrV 79508 . T A 964 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:997,102,0 chrV 79544 . T C 281 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.42;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:314,33,0 chrV 79549 . C T 260 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=23.64;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:293,30,0 chrV 79621 . C G 216.01 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=6.75;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:27:249,27,0 chrV 79626 . A G 379 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=10.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:42:412,42,0 chrV 79648 . C T 831 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=14.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:87:864,87,0 chrV 80081 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=21.31;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2398,243,0 chrV 80083 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.04;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2277,240,0 chrV 80096 . A G 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=106;Dels=0.00;FS=7.139;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.959;QD=19.23;ReadPosRankSum=2.402;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:2071,219,0 chrV 80128 . A C 1981 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=73.3739;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=19.23;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2014,207,0 chrV 80182 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=16.8085;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.62;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2563,270,0 chrV 80303 . T A 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=143;Dels=0.00;FS=6.061;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.895;QD=23.97;ReadPosRankSum=2.937;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3428,366,0 chrV 80437 . G C 5041.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.3573;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.47;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,200:206:99:5041,532,0 chrV 80485 . C T 4793.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.2775;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.09;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4793,481,0 chrV 80509 . G A 5197.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.3247;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.75;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5197,558,0 chrV 80557 . T G 5612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.7947;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.965;QD=23.00;ReadPosRankSum=1.718;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5612,592,0 chrV 80633 . A G 5801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=239;Dels=0.00;FS=6.016;HaplotypeScore=18.8619;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.042;QD=24.27;ReadPosRankSum=2.945;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:5801,613,0 chrV 80671 . G A 5135.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.7912;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.00;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5135,549,0 chrV 80717 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.1191;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=24.86;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5419,544,0 chrV 80728 . C G 4608.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.15;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4608,478,0 chrV 80737 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.91;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4098,430,0 chrV 81049 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.82;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2749,276,0 chrV 81128 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.220;QD=22.44;ReadPosRankSum=2.411;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2905,303,0 chrV 81181 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.016;QD=20.38;ReadPosRankSum=2.386;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1602,171,0 chrV 81333 . T A 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9559;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.163;QD=23.00;ReadPosRankSum=1.355;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2103,237,0 chrV 81356 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.11;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2017,210,0 chrV 81713 . G A 7474.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=24.7107;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.43;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:7474,760,0 chrV 82262 . T A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.9412;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.01;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4233,433,0 chrV 82641 . T A 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.795;QD=23.48;ReadPosRankSum=1.667;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3734,396,0 chrV 82669 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.52;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3899,394,0 chrV 82782 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.564;DP=124;Dels=0.00;FS=10.880;HaplotypeScore=5.7744;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.517;QD=20.66;ReadPosRankSum=3.706;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:5,117:124:99:2595,279,0 chrV 82875 . T G 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=3.265;HaplotypeScore=12.7374;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.155;QD=13.76;ReadPosRankSum=1.704;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:1739,186,0 chrV 82923 . A T 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.01;FS=3.761;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=1.512;QD=22.64;ReadPosRankSum=1.705;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2908,286,0 chrV 82928 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.35;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2616,276,0 chrV 82970 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=3.714;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.832;QD=21.19;ReadPosRankSum=1.678;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2745,288,0 chrV 83138 . G A 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.9026;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.827;QD=24.37;ReadPosRankSum=0.026;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4874,473,0 chrV 83167 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.60;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4625,466,0 chrV 83329 . G T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.81;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4645,487,0 chrV 83473 . G A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.98;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4891,499,0 chrV 83512 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.67;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4398,471,0 chrV 83548 . C T 5724.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.7641;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.11;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5724,589,0 chrV 83617 . T C 6474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=21.4955;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.667;QD=24.25;ReadPosRankSum=1.680;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:6474,685,0 chrV 83692 . G A 6566.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=20.1337;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.79;SB=-3.818e+03 GT:AD:DP:GQ:PL 1/1:1,273:276:99:6566,667,0 chrV 85693 . T C 6719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=287;Dels=0.00;FS=2.941;HaplotypeScore=31.0488;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.137;QD=23.41;ReadPosRankSum=2.415;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:2,284:287:99:6719,718,0 chrV 89243 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=218;Dels=0.00;FS=13.632;HaplotypeScore=21.3358;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.741;QD=24.54;ReadPosRankSum=3.362;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:4,209:218:99:5350,565,0 chrV 89642 . A G 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=199;Dels=0.00;FS=2.574;HaplotypeScore=19.8669;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.591;QD=23.25;ReadPosRankSum=2.924;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4627,481,0 chrV 89783 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2620,276,0 chrV 89953 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.10;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2995,318,0 chrV 90719 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.26;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3235,322,0 chrV 90720 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.28;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3153,322,0 chrV 90830 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.382;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=24.87;ReadPosRankSum=1.704;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3092,321,0 chrV 91208 . A G 5327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.7006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.010;QD=24.55;ReadPosRankSum=0.241;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5327,544,0 chrV 91322 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.47;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4942,496,0 chrV 91496 . A T 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.433;QD=26.02;ReadPosRankSum=1.693;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4580,454,0 chrV 91637 . C T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.97;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4869,499,0 chrV 91715 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.27;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5029,517,0 chrV 91751 . G A 4912.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4912,528,0 chrV 96109 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.3507;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.38;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2647,273,0 chrV 96439 . G T 2603 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2636,264,0 chrV 97239 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.71;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3628,364,0 chrV 97416 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2914,312,0 chrV 97629 . C A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3950,420,0 chrV 97695 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=4.602;HaplotypeScore=10.6788;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.693;QD=26.11;ReadPosRankSum=1.712;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4596,487,0 chrV 98040 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=7.194;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=1.247;QD=26.01;ReadPosRankSum=2.326;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3616,381,0 chrV 98574 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3955,394,0 chrV 98997 . C T 6077.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.9839;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.70;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:6077,619,0 chrV 99314 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.7082;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.94;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5188,523,0 chrV 99489 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.45;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3682,385,0 chrV 103136 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.548;QD=22.75;ReadPosRankSum=1.703;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2718,279,0 chrV 103389 . G T 2667 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2700,276,0 chrV 103569 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.552;QD=26.06;ReadPosRankSum=1.665;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4013,412,0 chrV 104404 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.46;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4159,447,0 chrV 104442 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.95;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3792,397,0 chrV 105743 . G A 4396.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4396,433,0 chrV 106439 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=19.65;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2764,279,0 chrV 106481 . A G 1911 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.399;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;MQRankSum=-1.287;QD=13.65;ReadPosRankSum=1.707;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1944,204,0 chrV 106489 . G C 1698 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=12.49;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:1731,186,0 chrV 106491 . T A 1869 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=13.95;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1902,192,0 chrV 106493 . G C 1831 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=13.56;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1864,192,0 chrV 106501 . C T 1935 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=13.44;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1968,213,0 chrV 107341 . C G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.06;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4222,433,0 chrV 107580 . G T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=21.0272;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4375,454,0 chrV 109956 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.71;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3295,331,0 chrV 111431 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.75;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3932,394,0 chrV 113079 . C T 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.420;QD=23.55;ReadPosRankSum=1.233;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3141,316,0 chrV 113148 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=17.3269;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3083,310,0 chrV 113394 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.946;QD=25.01;ReadPosRankSum=1.609;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3552,372,0 chrV 113457 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.796;QD=22.13;ReadPosRankSum=1.672;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3851,408,0 chrV 113919 . A C 2852 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.63;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2885,303,0 chrV 113925 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.25;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2992,321,0 chrV 113964 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.72;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2726,279,0 chrV 114444 . C T 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.332;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.835;QD=25.44;ReadPosRankSum=1.701;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2882,284,0 chrV 115024 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.509;QD=22.33;ReadPosRankSum=1.664;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2311,243,0 chrV 115035 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.76;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2332,237,0 chrV 115090 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.06;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1924,192,0 chrV 115202 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.22;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4186,427,0 chrV 115542 . G C 2773 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.50;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2806,303,0 chrV 115795 . G T 1987 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.84;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2020,216,0 chrV 117072 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.4119;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.81;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2702,273,0 chrV 117134 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=132;Dels=0.00;FS=2.593;HaplotypeScore=14.3467;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.664;QD=23.49;ReadPosRankSum=2.946;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:3,126:132:99:3134,336,0 chrV 117705 . T A 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5542;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.772;QD=25.96;ReadPosRankSum=1.638;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3868,382,0 chrV 117889 . C T 5011.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.2844;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.56;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5011,514,0 chrV 118304 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.324;QD=25.46;ReadPosRankSum=1.563;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3164,339,0 chrV 118974 . C T 7457.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=15.2649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-4.228e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7457,784,0 chrV 119169 . T A 5755.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5755,583,0 chrV 119313 . C A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.80;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4081,418,0 chrV 123378 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=154;Dels=0.00;FS=10.481;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.770;QD=22.25;ReadPosRankSum=2.954;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3427,355,0 chrV 124912 . C A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.3922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4783,508,0 chrV 125141 . A G 5453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=239;Dels=0.00;FS=7.433;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.057;QD=22.82;ReadPosRankSum=2.429;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:2,235:239:99:5453,571,0 chrV 125211 . A T 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.381;QD=23.30;ReadPosRankSum=1.645;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3705,393,0 chrV 127286 . T C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5929;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.694;QD=24.23;ReadPosRankSum=1.694;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4410,466,0 chrV 127516 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.26;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4490,483,0 chrV 127548 . G T 5294.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.97;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5294,535,0 chrV 127837 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=161;Dels=0.00;FS=5.972;HaplotypeScore=12.4023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.862;QD=24.34;ReadPosRankSum=2.944;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3918,420,0 chrV 128035 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=6.501;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.867;QD=24.23;ReadPosRankSum=2.408;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4313,454,0 chrV 128183 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=176;Dels=0.00;FS=8.461;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.671;QD=24.36;ReadPosRankSum=2.379;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4287,456,0 chrV 129112 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3356,343,0 chrV 130174 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3655,384,0 chrV 130887 . G A 1183 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1216,135,0 chrV 131540 . C A 1556 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.52;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1589,162,0 chrV 132567 . T C 367.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010;DP=44;Dels=0.00;FS=21.357;HaplotypeScore=18.0665;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.373;QD=8.36;ReadPosRankSum=-3.273;SB=-3.971e+00 GT:AD:DP:GQ:PL 0/1:4,37:44:3:397,0,3 chrV 132767 . T A 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.050;QD=27.84;ReadPosRankSum=2.369;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:3397,340,0 chrV 139492 . T G 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=209;Dels=0.00;FS=10.021;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=24.68;ReadPosRankSum=2.937;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:3,204:209:99:5158,532,0 chrV 139791 . A G 824 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.16;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:857,90,0 chrV 140700 . C T 5960.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.0139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.21;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5960,589,0 chrV 141061 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.69;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3135,330,0 chrV 141117 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.463;QD=20.47;ReadPosRankSum=1.698;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,100:105:99:2182,234,0 chrV 141189 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6826;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3534,358,0 chrV 141400 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=3.001;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.541;QD=22.92;ReadPosRankSum=2.390;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3781,402,0 chrV 141521 . T A 2990 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.73;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3023,315,0 chrV 141779 . T C 5318.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.20;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5318,559,0 chrV 142607 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1786,180,0 chrV 143848 . A G 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.255;QD=23.13;ReadPosRankSum=1.705;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3017,324,0 chrV 145503 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2399,252,0 chrV 146380 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.2032;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.18;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3675,390,0 chrV 147449 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2704;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.33;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2780,300,0 chrV 147672 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.75;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2289,246,0 chrV 148485 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=8.976;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.954;QD=21.96;ReadPosRankSum=2.413;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2976,315,0 chrV 148773 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.91;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3912,423,0 chrV 150005 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.35;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2773,279,0 chrV 150086 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2353,249,0 chrV 150304 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2572,270,0 chrV 150355 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=3.903;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.395;QD=24.41;ReadPosRankSum=1.701;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2791,297,0 chrV 151441 . A G 1102 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.45;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1135,120,0 chrV 151454 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.43;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1228,120,0 chrV 151518 . T G 1424 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.55;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1457,153,0 chrV 151653 . T A 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.550;QD=24.91;ReadPosRankSum=2.383;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1901,189,0 chrV 151723 . T C 1713 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=20.15;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1746,180,0 chrV 151728 . T C 1681 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=0.066;QD=18.27;ReadPosRankSum=2.924;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1714,180,0 chrV 151731 . C T 1689 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.16;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1722,174,0 chrV 151736 . A G 1764 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.97;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1797,192,0 chrV 152072 . A T 321 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.40;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:354,36,0 chrV 152115 . G A 930 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:93:963,93,0 chrV 152132 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=56.4119;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=0.27;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,62:62:6:48,6,0 chrV 152168 . C A 1457 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1490,147,0 chrV 152206 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.39;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1960,192,0 chrV 152275 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.742;QD=25.63;ReadPosRankSum=1.703;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3083,321,0 chrV 152616 . G A 5109.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=25.17;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5109,511,0 chrV 152630 . A T 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.907;QD=24.15;ReadPosRankSum=1.714;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4565,457,0 chrV 152800 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.41;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2991,312,0 chrV 152924 . G A 299 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=23.5690;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=3.32;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:33:332,33,0 chrV 153129 . A C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=6.752;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.744;QD=24.11;ReadPosRankSum=2.422;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4364,460,0 chrV 153241 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.596;QD=24.84;ReadPosRankSum=1.664;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3825,400,0 chrV 153284 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=24.46;ReadPosRankSum=1.710;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3865,400,0 chrV 153551 . A G 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=4.771;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.475;QD=23.25;ReadPosRankSum=1.655;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3218,342,0 chrV 153804 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.8181;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-1.659;QD=19.27;ReadPosRankSum=1.677;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3680,388,0 chrV 153808 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=190;Dels=0.00;FS=3.002;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.860;QD=19.86;ReadPosRankSum=2.411;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3773,405,0 chrV 153840 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.01;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3077,310,0 chrV 153844 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.04;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2879,291,0 chrV 153951 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.75;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3420,357,0 chrV 153952 . G C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.94;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3423,357,0 chrV 153989 . G T 3207 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3205;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.58;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3240,328,0 chrV 154107 . C A 3042 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.78;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3075,313,0 chrV 154354 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=112;Dels=0.00;FS=6.071;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.766;QD=24.76;ReadPosRankSum=2.163;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2806,291,0 chrV 154390 . C G 2893 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.16;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2926,306,0 chrV 154437 . C A 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.00;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3081,315,0 chrV 154531 . T A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.79;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3355,357,0 chrV 154915 . A C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.884;QD=25.78;ReadPosRankSum=1.708;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3712,393,0 chrV 155130 . G C 4221.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:4221,445,0 chrV 155613 . A T 2785 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=27.04;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2818,285,0 chrV 155647 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=24.05;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2919,306,0 chrV 155848 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=143.0913;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=21.28;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1778,189,0 chrV 155933 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.61;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1459,153,0 chrV 155963 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.46;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1138,114,0 chrV 156015 . G A 487 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=16.79;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:54:520,54,0 chrV 156020 . T G 272 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=11.33;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:33:305,33,0 chrV 156027 . G A 232.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=14.50;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:265,27,0 chrV 156076 . T A 118.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;MQRankSum=-1.741;QD=11.83;ReadPosRankSum=1.393;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:1,9:10:15:151,15,0 chrV 156077 . C A 118.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;QD=11.83;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:15:151,15,0 chrV 156109 . G A 135.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=9.65;SB=-1.401e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:18:168,18,0 chrV 156151 . G A 626 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=20.19;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:659,69,0 chrV 156159 . T C 550 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=13.10;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:60:583,60,0 chrV 156174 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=18.66;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:966,99,0 chrV 156209 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=18.39;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1118,117,0 chrV 156215 . A G 1070 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=18.14;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1103,117,0 chrV 156250 . G A 928 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.09;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:961,96,0 chrV 156290 . G T 1021 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.02;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1054,108,0 chrV 156762 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.883;QD=23.77;ReadPosRankSum=2.350;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2386,246,0 chrV 156775 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.48;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2639,276,0 chrV 157039 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.0792;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.72;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4795,519,0 chrV 157149 . G A 5208.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.04;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5208,538,0 chrV 157238 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.02;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4866,493,0 chrV 157328 . A T 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.786;QD=24.04;ReadPosRankSum=2.394;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3230,331,0 chrV 157488 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.19;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1702,180,0 chrV 157503 . A G 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.028;QD=22.80;ReadPosRankSum=1.674;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1378,144,0 chrV 157537 . A T 882 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.94;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:93:915,93,0 chrV 158386 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=7.880;HaplotypeScore=6.4337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.989;QD=24.03;ReadPosRankSum=2.414;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3340,357,0 chrV 158705 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.232;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.220;QD=24.66;ReadPosRankSum=1.694;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4464,469,0 chrV 159092 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.87;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2343,252,0 chrV 159413 . G A 6259.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.4876;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=25.24;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6259,625,0 chrV 159422 . T C 5703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.122;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.8456;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.997;QD=21.68;ReadPosRankSum=3.897;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:6,254:263:99:5703,589,0 chrV 159426 . G A 5714.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=7.5249;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.93;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,267:273:99:5714,610,0 chrV 159475 . C A 5758.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.92;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:5758,624,0 chrV 159556 . T C 6605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=266;Dels=0.00;FS=7.089;HaplotypeScore=13.7655;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.813;QD=24.83;ReadPosRankSum=2.403;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:2,262:266:99:6605,691,0 chrV 159624 . G A 7200.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=24.6150;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.49;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:7200,733,0 chrV 159810 . G A 5778.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.80;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5778,580,0 chrV 160010 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=202;Dels=0.00;FS=6.087;HaplotypeScore=18.0809;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.010;QD=23.49;ReadPosRankSum=2.925;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4745,493,0 chrV 161419 . C A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.47;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4086,435,0 chrV 161946 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.8813;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.34;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3927,409,0 chrV 163187 . G A 5394.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.97;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5394,544,0 chrV 163290 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.8541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=26.06;ReadPosRankSum=1.711;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4352,445,0 chrV 163466 . A C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=3.704;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.975;QD=24.56;ReadPosRankSum=1.656;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4543,486,0 chrV 164225 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.452;QD=22.59;ReadPosRankSum=1.707;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3173,339,0 chrV 164498 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.059;QD=21.87;ReadPosRankSum=1.698;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2286,240,0 chrV 164516 . T G 2288 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9444;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.99;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2321,252,0 chrV 165183 . T A 2716 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.71;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2749,279,0 chrV 165294 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2787,288,0 chrV 165547 . T G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=158;Dels=0.00;FS=2.514;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.376;QD=24.16;ReadPosRankSum=2.917;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3817,411,0 chrV 165924 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.26;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3460,366,0 chrV 166192 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.43;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2891,303,0 chrV 166422 . A G 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=215;Dels=0.00;FS=3.028;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.170;QD=24.31;ReadPosRankSum=2.380;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5226,550,0 chrV 166670 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3566,375,0 chrV 169109 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.18;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3450,354,0 chrV 170070 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.23;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2844,306,0 chrV 170319 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3550,378,0 chrV 170706 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4348,433,0 chrV 171267 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.84;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2542,267,0 chrV 171444 . A T 2393 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.23;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2426,252,0 chrV 171463 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.503;QD=24.12;ReadPosRankSum=1.667;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2590,270,0 chrV 173056 . T G 5411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=229;Dels=0.00;FS=6.934;HaplotypeScore=13.6300;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.038;QD=23.63;ReadPosRankSum=1.928;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:5411,565,0 chrV 173645 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.88;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2440,246,0 chrV 173651 . C A 2092 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.12;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2125,216,0 chrV 173763 . T A 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=102;Dels=0.00;FS=6.023;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.416;QD=20.99;ReadPosRankSum=2.753;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2174,234,0 chrV 174633 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.42;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3699,399,0 chrV 181705 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.935;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.352;QD=25.45;ReadPosRankSum=1.685;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3715,379,0 chrV 183025 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3668,370,0 chrV 183957 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2359;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4275,442,0 chrV 186788 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4173,424,0 chrV 187838 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.768;QD=25.02;ReadPosRankSum=1.706;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3327,345,0 chrV 189375 . C T 85.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.25;SB=-3.226e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:118,12,0 chrV 190283 . A G 5440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=223;Dels=0.00;FS=5.972;HaplotypeScore=14.2168;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.384;QD=24.39;ReadPosRankSum=2.968;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:3,217:223:99:5440,580,0 chrV 190553 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.57;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4902,493,0 chrV 190754 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2168;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4230,430,0 chrV 190838 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.769;QD=23.46;ReadPosRankSum=1.691;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4011,426,0 chrV 190997 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3334,343,0 chrV 192065 . G T 8104.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.40;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:8104,820,0 chrV 192377 . T G 8806.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=391;Dels=0.00;FS=8.122;HaplotypeScore=39.5940;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.526;QD=22.52;ReadPosRankSum=2.412;SB=-4.097e+03 GT:AD:DP:GQ:PL 1/1:2,387:391:99:8806,940,0 chrV 192719 . G A 4862.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.7537;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=1;QD=23.95;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4862,502,0 chrV 193011 . T C 6027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=3.305;HaplotypeScore=16.3322;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.596;QD=24.60;ReadPosRankSum=1.675;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:6027,640,0 chrV 193525 . T C 7556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=314;Dels=0.00;FS=2.895;HaplotypeScore=20.0191;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.081;QD=24.06;ReadPosRankSum=2.394;SB=-3.655e+03 GT:AD:DP:GQ:PL 1/1:2,311:314:99:7556,796,0 chrV 193624 . T C 8717.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=376;Dels=0.00;FS=3.995;HaplotypeScore=30.9124;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.297;QD=23.18;ReadPosRankSum=3.213;SB=-4.230e+03 GT:AD:DP:GQ:PL 1/1:5,370:376:99:8717,931,0 chrV 193678 . A G 9290.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.061;DP=375;Dels=0.00;FS=4.677;HaplotypeScore=30.4346;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.720;QD=24.77;ReadPosRankSum=3.243;SB=-4.602e+03 GT:AD:DP:GQ:PL 1/1:4,369:375:99:9290,973,0 chrV 193876 . G A 7883.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=19.8568;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.05;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:7883,805,0 chrV 193912 . C A 7370.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.41;SB=-3.594e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:7370,742,0 chrV 194101 . C A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.3125;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.52;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3435,352,0 chrV 194166 . T G 4511.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.2560;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.90;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4511,475,0 chrV 194498 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.32;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3883,391,0 chrV 194501 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.53;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3790,402,0 chrV 194540 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.28;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3554,367,0 chrV 194625 . T A 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=4.555;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.049;QD=24.22;ReadPosRankSum=1.707;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3343,337,0 chrV 194646 . T G 2685 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.78;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2718,285,0 chrV 194686 . A G 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=136;Dels=0.00;FS=5.284;HaplotypeScore=122.8130;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-0.889;QD=12.17;ReadPosRankSum=2.654;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:5,131:136:99:1688,183,0 chrV 194707 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9523;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=10.40;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:1396,138,0 chrV 194719 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=11.36;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:1510,153,0 chrV 194739 . C T 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=127;Dels=0.00;FS=3.114;HaplotypeScore=4.2669;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=-0.068;QD=13.98;ReadPosRankSum=-1.378;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1809,186,0 chrV 194881 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=24.12;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3193,325,0 chrV 195272 . G A 6620.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=21.4997;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.07;SB=-3.529e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6620,667,0 chrV 195341 . G A 8723.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=17.0611;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.37;SB=-4.634e+03 GT:AD:DP:GQ:PL 1/1:0,354:358:99:8723,878,0 chrV 195368 . C G 8551.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=11.9361;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.17;SB=-4.627e+03 GT:AD:DP:GQ:PL 1/1:0,364:369:99:8551,901,0 chrV 195425 . T C 7092.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=367;Dels=0.00;FS=3.022;HaplotypeScore=11.0298;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.250;QD=19.32;ReadPosRankSum=2.389;SB=-4.696e+03 GT:AD:DP:GQ:PL 1/1:2,365:367:99:7092,748,0 chrV 195440 . A G 6970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=340;Dels=0.00;FS=3.006;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.353;QD=20.50;ReadPosRankSum=2.369;SB=-4.442e+03 GT:AD:DP:GQ:PL 1/1:2,336:340:99:6970,736,0 chrV 195529 . A G 7209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=298;Dels=0.00;FS=5.257;HaplotypeScore=17.4462;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.503;QD=24.19;ReadPosRankSum=2.943;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:3,294:298:99:7209,754,0 chrV 195746 . A G 6056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=3.257;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.955;QD=23.66;ReadPosRankSum=1.678;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:6056,637,0 chrV 195765 . A G 5592.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.5923;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.46;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5592,589,0 chrV 195830 . T G 5810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=20.1774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.716;QD=21.60;ReadPosRankSum=1.719;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:2,265:269:99:5810,628,0 chrV 195975 . T C 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=267;Dels=0.00;FS=7.131;HaplotypeScore=18.9480;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.313;QD=22.51;ReadPosRankSum=2.356;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:2,261:267:99:6009,625,0 chrV 196190 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=192;Dels=0.00;FS=2.965;HaplotypeScore=18.7199;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.761;QD=22.83;ReadPosRankSum=2.347;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4384,457,0 chrV 196271 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.50;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4921,499,0 chrV 196326 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=168;Dels=0.00;FS=8.704;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-0.550;QD=21.52;ReadPosRankSum=3.407;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3616,384,0 chrV 196352 . T C 2463 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=17.72;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2496,273,0 chrV 196355 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.814;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.683;QD=16.99;ReadPosRankSum=1.708;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2445,267,0 chrV 196385 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=2.667;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.789;QD=14.28;ReadPosRankSum=2.413;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1946,207,0 chrV 196391 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=15.28;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1989,204,0 chrV 196526 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=22.15;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2004,210,0 chrV 196548 . T C 1514 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=20.74;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1547,171,0 chrV 196553 . C T 1139 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=17.80;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1172,144,0 chrV 196554 . T C 1126 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=17.59;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1159,144,0 chrV 196708 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.02;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1559,165,0 chrV 196794 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=26.94;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1784,183,0 chrV 196832 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.37;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2299,243,0 chrV 196983 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.100;QD=21.01;ReadPosRankSum=1.705;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2722,279,0 chrV 196986 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.36;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2783,282,0 chrV 197102 . A T 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.324;QD=22.20;ReadPosRankSum=1.648;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2763,285,0 chrV 197103 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.894;QD=21.65;ReadPosRankSum=1.676;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2717,288,0 chrV 197145 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.93;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3268,325,0 chrV 197322 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.50;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3229,342,0 chrV 197352 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.62;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3234,339,0 chrV 197415 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=119;Dels=0.00;FS=3.043;HaplotypeScore=12.2298;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.783;QD=23.87;ReadPosRankSum=2.366;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2873,309,0 chrV 197493 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.65;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4206,415,0 chrV 197751 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.34;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3310,345,0 chrV 197916 . C A 3069 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.17;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3102,330,0 chrV 198077 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.91;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2988,312,0 chrV 198082 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.73;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3118,313,0 chrV 198126 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.91;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3218,328,0 chrV 198538 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.10;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1067,114,0 chrV 198629 . A G 760 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:793,84,0 chrV 198669 . G T 1237 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.4009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1270,138,0 chrV 198865 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=3.441;HaplotypeScore=6.5415;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=-0.686;QD=25.16;ReadPosRankSum=1.699;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2700,282,0 chrV 198962 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3349,354,0 chrV 199099 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.9974;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.709;QD=26.98;ReadPosRankSum=-1.025;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3966,415,0 chrV 199140 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.70;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4072,406,0 chrV 199370 . A G 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.893;QD=24.72;ReadPosRankSum=1.714;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4821,502,0 chrV 200053 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.459;QD=26.05;ReadPosRankSum=1.623;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3308,348,0 chrV 200737 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.84;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3502,352,0 chrV 200759 . T G 3190 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.28;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3223,342,0 chrV 200851 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4903,490,0 chrV 200908 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.055;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.643;QD=23.83;ReadPosRankSum=1.679;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4647,493,0 chrV 201228 . A T 7669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=294;Dels=0.00;FS=10.389;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.017;QD=26.09;ReadPosRankSum=2.901;SB=-3.701e+03 GT:AD:DP:GQ:PL 1/1:3,291:294:99:7669,781,0 chrV 201468 . C T 6801.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=16.8453;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.55;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6801,697,0 chrV 201582 . T G 6020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=270;Dels=0.00;FS=7.370;HaplotypeScore=19.0106;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.323;QD=22.30;ReadPosRankSum=2.422;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:2,266:270:99:6020,643,0 chrV 201726 . G A 5827.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5827,586,0 chrV 201879 . C T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.4657;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.91;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4448,474,0 chrV 201988 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=5.458;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.281;QD=20.97;ReadPosRankSum=1.704;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2654,282,0 chrV 202172 . T A 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.520;QD=24.34;ReadPosRankSum=1.697;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2443,258,0 chrV 202232 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1904;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.17;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3481,352,0 chrV 202285 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.169;QD=24.71;ReadPosRankSum=2.307;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3435,357,0 chrV 202314 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=2.603;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.522;QD=24.30;ReadPosRankSum=2.414;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3402,357,0 chrV 202470 . C T 6123.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.30;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6123,622,0 chrV 202512 . C T 5583.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.9001;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.06;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5583,583,0 chrV 202835 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.112;QD=25.75;ReadPosRankSum=1.680;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3502,358,0 chrV 203211 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.49;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3689,390,0 chrV 203226 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.517;QD=19.95;ReadPosRankSum=1.712;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3432,372,0 chrV 203238 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.21;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3658,376,0 chrV 203277 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=217;Dels=0.00;FS=12.091;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.716;QD=19.72;ReadPosRankSum=2.930;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4279,454,0 chrV 203553 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.75;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4182,442,0 chrV 203839 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4505,469,0 chrV 203996 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=3.018;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.358;QD=24.36;ReadPosRankSum=2.407;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4263,439,0 chrV 204261 . T C 5454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=238;Dels=0.00;FS=9.134;HaplotypeScore=15.0657;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.670;QD=22.92;ReadPosRankSum=3.358;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:4,234:238:99:5454,554,0 chrV 204510 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.24;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3869,397,0 chrV 204525 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.46;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3750,379,0 chrV 205014 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.70;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4171,430,0 chrV 205038 . T G 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.297;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.461;QD=22.02;ReadPosRankSum=1.695;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4140,433,0 chrV 205045 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.76;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3830,405,0 chrV 205086 . T G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.59;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3498,366,0 chrV 206003 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.07;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4862,499,0 chrV 206288 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4061,435,0 chrV 206666 . G T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.11;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4002,417,0 chrV 206836 . G C 3096 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.63;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3129,333,0 chrV 207156 . A G 2535 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=22.43;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2568,267,0 chrV 207179 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=20.80;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1988,207,0 chrV 207187 . A G 1528 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=20.37;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,168,0 chrV 207222 . C A 1170 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=19.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1203,123,0 chrV 207241 . A C 1287 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=18.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1320,141,0 chrV 207276 . A G 1780 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=18.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1813,198,0 chrV 207285 . A C 1721 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=0;MQRankSum=-2.949;QD=17.56;ReadPosRankSum=2.928;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1754,186,0 chrV 207299 . T C 1707 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1740,186,0 chrV 207304 . C G 1657 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=19.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1690,180,0 chrV 207322 . T C 1514 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=19.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1547,168,0 chrV 207328 . C T 1540 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1573,162,0 chrV 207338 . T C 920 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=15.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:953,123,0 chrV 207464 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=19.37;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:808,84,0 chrV 207479 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=21.12;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:899,90,0 chrV 207516 . A G 790 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.27;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:823,84,0 chrV 207565 . T C 518 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=19.92;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:551,57,0 chrV 207773 . T G 2818 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.85;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2851,303,0 chrV 207821 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.62;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2537,276,0 chrV 207968 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=179;Dels=0.00;FS=3.622;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.168;QD=23.88;ReadPosRankSum=1.712;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:4274,448,0 chrV 208040 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=168;Dels=0.00;FS=3.089;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.421;QD=22.77;ReadPosRankSum=1.711;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3826,394,0 chrV 208304 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.47;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2159,216,0 chrV 208343 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.68;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1711,174,0 chrV 208385 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.01;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2014,201,0 chrV 208450 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.18;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1433,147,0 chrV 208688 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=145;Dels=0.00;FS=5.237;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.521;QD=23.45;ReadPosRankSum=2.813;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3400,363,0 chrV 208703 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.77;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3518,366,0 chrV 208850 . C G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.29;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4052,432,0 chrV 209424 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=208;Dels=0.00;FS=6.976;HaplotypeScore=15.7499;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.445;QD=21.91;ReadPosRankSum=2.355;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4558,484,0 chrV 209836 . G A 6446.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.61;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6446,661,0 chrV 209849 . T C 5803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=257;Dels=0.00;FS=3.455;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.557;QD=22.58;ReadPosRankSum=1.665;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5803,610,0 chrV 210140 . G T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.90;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4184,421,0 chrV 210179 . G C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4255,450,0 chrV 210347 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.82;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3287,337,0 chrV 210480 . G T 2448 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7384;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.31;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2481,264,0 chrV 210504 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=11.0367;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.41;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2864,288,0 chrV 210614 . C A 2721 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.67;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2754,279,0 chrV 210770 . A C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=22.88;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3615,373,0 chrV 210777 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=21.93;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3334,342,0 chrV 210793 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=161;Dels=0.00;FS=2.617;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=0.237;QD=19.74;ReadPosRankSum=2.373;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3211,333,0 chrV 210833 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=197;Dels=0.00;FS=6.270;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.195;QD=20.67;ReadPosRankSum=2.424;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4071,432,0 chrV 210930 . G T 5052.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.28;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5052,520,0 chrV 210995 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.38;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3701,411,0 chrV 210996 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.52;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3729,408,0 chrV 211091 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.2470;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.91;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4558,484,0 chrV 211171 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=7.087;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.752;QD=24.64;ReadPosRankSum=2.381;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4386,451,0 chrV 211284 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.69;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4377,439,0 chrV 211340 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.388;HaplotypeScore=9.5080;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.196;QD=23.15;ReadPosRankSum=1.711;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3890,420,0 chrV 211386 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1764;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.93;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3900,403,0 chrV 211413 . G T 3182 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.27;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3215,328,0 chrV 211419 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.61;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3415,360,0 chrV 211526 . A G 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=202;Dels=0.00;FS=6.963;HaplotypeScore=11.8015;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.694;QD=24.44;ReadPosRankSum=2.425;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4936,514,0 chrV 211559 . G A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.92;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4880,528,0 chrV 211741 . T G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6653;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.58;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3485,369,0 chrV 211760 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=16.92;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2757,291,0 chrV 211770 . C A 2577 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.41;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2610,276,0 chrV 212255 . C A 2080 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.37;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2113,213,0 chrV 212373 . A C 2443 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=24.19;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2476,261,0 chrV 212393 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.22;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2099,216,0 chrV 212430 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=24.10;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1768,186,0 chrV 212442 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=56.5253;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=20.77;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1362,144,0 chrV 212499 . C A 1559 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.49;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1592,159,0 chrV 212585 . C A 2704 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.51;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2737,276,0 chrV 212901 . A G 4029.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.27;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4029,426,0 chrV 213076 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.15;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3058,333,0 chrV 213080 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.33;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2981,318,0 chrV 213244 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.09;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1903,198,0 chrV 213423 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1674,174,0 chrV 213535 . A G 4965.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.3888;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.86;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4965,511,0 chrV 213822 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.416;QD=23.02;ReadPosRankSum=0.223;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4121,421,0 chrV 213865 . T A 580 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=3.54;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:60:613,60,0 chrV 213896 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=12.74;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1562,168,0 chrV 214187 . G A 5412.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.02;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5412,544,0 chrV 214893 . C T 4990.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.8925;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.70;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4990,520,0 chrV 216589 . C G 4229.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4229,448,0 chrV 217039 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.109;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.690;QD=21.60;ReadPosRankSum=1.680;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2906,312,0 chrV 217242 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.643;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.525;QD=24.35;ReadPosRankSum=1.710;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3774,399,0 chrV 219768 . T C 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.0200;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.880;QD=24.88;ReadPosRankSum=1.677;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4678,487,0 chrV 220108 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1431;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4317,436,0 chrV 220175 . T A 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=208;Dels=0.00;FS=3.023;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.350;QD=24.54;ReadPosRankSum=2.426;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:5105,541,0 chrV 220210 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7318;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.84;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4455,454,0 chrV 220516 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3923,415,0 chrV 222087 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=20.6996;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.40;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4891,505,0 chrV 222207 . A G 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=4.433;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.016;QD=25.45;ReadPosRankSum=1.638;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5651,592,0 chrV 222592 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=1.114;QD=27.88;ReadPosRankSum=1.678;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3597,358,0 chrV 222643 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.69;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3960,403,0 chrV 223618 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=208;Dels=0.00;FS=9.156;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.481;QD=23.74;ReadPosRankSum=3.410;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:4,204:208:99:4938,520,0 chrV 223768 . A G 5692.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.8001;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.82;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5692,601,0 chrV 224276 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3655,387,0 chrV 225229 . C T 1889 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=22.22;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1922,207,0 chrV 225233 . G A 1804 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.73;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1837,189,0 chrV 225238 . G T 1622 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.53;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1655,180,0 chrV 225494 . G A 1386 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.00;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1419,156,0 chrV 225496 . A G 1426 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.28;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1459,153,0 chrV 225499 . T C 1373 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.594;QD=19.61;ReadPosRankSum=1.683;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1406,150,0 chrV 225668 . T G 1240 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1273,132,0 chrV 225778 . A G 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.493;QD=5.96;ReadPosRankSum=2.073;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:2,11:13:12:110,12,0 chrV 225827 . C T 611 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:66:644,66,0 chrV 226491 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.33;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3190,339,0 chrV 226500 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.35;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3001,301,0 chrV 226861 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.5755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2389,240,0 chrV 227640 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=3.391;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.489;QD=23.40;ReadPosRankSum=1.706;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3145,336,0 chrV 228104 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.62;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3246,336,0 chrV 228468 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.42;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2411,249,0 chrV 229119 . A G 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.6978;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.376;QD=23.88;ReadPosRankSum=1.716;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5062,529,0 chrV 229595 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.1673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3963,420,0 chrV 229778 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=10.8449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4624,481,0 chrV 230512 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.958;QD=21.09;ReadPosRankSum=1.714;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4008,426,0 chrV 231027 . A T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4073,415,0 chrV 231721 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.4223;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2848,300,0 chrV 232364 . G C 2083 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2116,222,0 chrV 234239 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3508,355,0 chrV 234299 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2888,306,0 chrV 234408 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.5205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.441;QD=21.51;ReadPosRankSum=1.684;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3109,324,0 chrV 234626 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=173;Dels=0.00;FS=2.652;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.250;QD=25.39;ReadPosRankSum=2.307;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4393,457,0 chrV 234669 . G T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.79;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3322,337,0 chrV 234739 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.83;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3198,325,0 chrV 234749 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.66;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2988,309,0 chrV 234931 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.85;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1726,174,0 chrV 235302 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3315,343,0 chrV 235505 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1904,192,0 chrV 235773 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3150,330,0 chrV 237481 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1922,204,0 chrV 238313 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2532,255,0 chrV 238917 . T A 2989 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3022,321,0 chrV 239206 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2935,306,0 chrV 239875 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.24;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3635,381,0 chrV 240029 . C G 2760 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.73;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2793,291,0 chrV 240035 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.83;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2804,288,0 chrV 240100 . T G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.391;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.383;QD=18.06;ReadPosRankSum=1.706;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2435,255,0 chrV 240112 . G C 2648 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.06;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2681,285,0 chrV 240371 . G T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.7636;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.90;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4304,433,0 chrV 240446 . G A 5427.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5060;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.60;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5427,541,0 chrV 240504 . G A 5856.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.03;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5856,589,0 chrV 240598 . C T 4914.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.86;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4914,499,0 chrV 240731 . G A 6589.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6589,661,0 chrV 241047 . A G 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=255;Dels=0.00;FS=2.553;HaplotypeScore=19.8724;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.427;QD=18.36;ReadPosRankSum=2.917;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:4683,484,0 chrV 241059 . G A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.65;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4419,466,0 chrV 241084 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.04;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4069,412,0 chrV 241109 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.71;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4493,466,0 chrV 241166 . A G 4519.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.5833;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.04;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4519,472,0 chrV 241256 . A G 3046 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.76;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3079,339,0 chrV 241358 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.08;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3804,379,0 chrV 241371 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=149;Dels=0.00;FS=6.061;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.291;QD=23.43;ReadPosRankSum=2.953;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3491,366,0 chrV 241688 . T A 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.330;QD=25.48;ReadPosRankSum=1.568;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1103,117,0 chrV 241698 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=28.42;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:971,96,0 chrV 241759 . C T 592 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=23.68;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:63:625,63,0 chrV 241799 . C A 748 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=25.79;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:75:781,75,0 chrV 241800 . C G 720 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=25.71;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:75:753,75,0 chrV 241849 . G A 609 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.00;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:642,66,0 chrV 241868 . T A 289 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=0;QD=12.57;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:322,33,0 chrV 241873 . T A 263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=25;Dels=0.00;FS=3.128;HaplotypeScore=19.8993;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-2.154;QD=10.52;ReadPosRankSum=2.254;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,23:25:30:296,30,0 chrV 241980 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3982,400,0 chrV 242043 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.3368;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.51;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3606,370,0 chrV 242167 . G A 5666.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.7875;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.07;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5666,565,0 chrV 242286 . G T 5559.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.17;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5559,553,0 chrV 242361 . C T 7664.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=13.6369;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.46;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7664,796,0 chrV 242413 . T C 6377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=296;Dels=0.02;FS=0.000;HaplotypeScore=10.6263;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=1.637;QD=21.54;ReadPosRankSum=1.696;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:6377,658,0 chrV 242428 . T G 5828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=284;Dels=0.00;FS=2.907;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.767;QD=20.52;ReadPosRankSum=2.406;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:5828,613,0 chrV 242456 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=1.678;QD=18.16;ReadPosRankSum=0.518;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:4612,478,0 chrV 242461 . T A 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=242;Dels=0.00;FS=5.849;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-1.054;QD=18.05;ReadPosRankSum=2.921;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:4367,442,0 chrV 242472 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=2.972;HaplotypeScore=10.1635;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-1.430;QD=16.72;ReadPosRankSum=2.360;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:4147,444,0 chrV 242693 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=0.06;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:6:47,6,0 chrV 242752 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=216;Dels=0.00;FS=5.933;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.416;QD=21.06;ReadPosRankSum=2.967;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4550,481,0 chrV 242945 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.98;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4599,469,0 chrV 243107 . C T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.25;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4293,436,0 chrV 243157 . A C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.793;QD=23.69;ReadPosRankSum=1.711;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3932,415,0 chrV 243299 . T C 4610.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8342;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.40;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4610,478,0 chrV 243350 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=6.749;HaplotypeScore=7.3006;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.764;QD=20.87;ReadPosRankSum=2.418;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3297,363,0 chrV 243372 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=165;Dels=0.00;FS=9.191;HaplotypeScore=10.2178;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.665;QD=22.15;ReadPosRankSum=2.958;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3655,387,0 chrV 243452 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.67;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4564,469,0 chrV 243656 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=1.13;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:55,6,0 chrV 243719 . G T 81.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=11.64;SB=-3.039e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:114,12,0 chrV 243816 . A G 110.26 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=4.08;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:15:143,15,0 chrV 243825 . T C 139.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;MQRankSum=-0.932;QD=3.86;ReadPosRankSum=2.314;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,34:36:18:172,18,0 chrV 243828 . G A 142.13 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=3.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,37:38:18:175,18,0 chrV 243885 . G A 911 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=11.99;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:944,102,0 chrV 243892 . A T 1227 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=15.94;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1260,126,0 chrV 243981 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=26.31;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3085,316,0 chrV 244092 . A T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=24.89;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4654,492,0 chrV 244113 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.83;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4361,436,0 chrV 244116 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=2.986;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.196;QD=20.89;ReadPosRankSum=2.386;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4011,415,0 chrV 244404 . T G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.91;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4360,463,0 chrV 244512 . G T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9672;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.33;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3633,381,0 chrV 244596 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.91;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3515,366,0 chrV 244650 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.87;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3120,316,0 chrV 245593 . G C 4067.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.92;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4067,430,0 chrV 245855 . G C 5101.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.29;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5101,547,0 chrV 245951 . C G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=24.12;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4269,445,0 chrV 246143 . G A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9908;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=26.15;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5334,538,0 chrV 246158 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=26.07;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4927,499,0 chrV 246194 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;DP=196;Dels=0.00;FS=9.097;HaplotypeScore=4.2923;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.093;QD=17.28;ReadPosRankSum=2.740;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:3386,393,0 chrV 246195 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=194;Dels=0.00;FS=9.082;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-2.727;QD=16.92;ReadPosRankSum=2.510;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:4,189:194:99:3282,368,0 chrV 246282 . G A 6282.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.64;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6282,634,0 chrV 246498 . A C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7851;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.127;QD=24.96;ReadPosRankSum=1.707;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3395,351,0 chrV 246542 . C G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.84;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3337,348,0 chrV 246588 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=6.303;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.546;QD=22.42;ReadPosRankSum=1.670;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2544,270,0 chrV 246604 . T C 2063 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.63;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2096,225,0 chrV 246716 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.01;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1667,168,0 chrV 246845 . G C 2079 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.17;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2112,225,0 chrV 247147 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.56;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4453,469,0 chrV 247282 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.28;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2892,306,0 chrV 247354 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.69;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3333,343,0 chrV 248286 . A G 4600.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1543;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=23.96;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4600,501,0 chrV 248691 . T G 2309 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.10;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2342,255,0 chrV 248822 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=6.552;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.302;QD=24.23;ReadPosRankSum=2.360;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2698,279,0 chrV 248843 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.63;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1980,213,0 chrV 248941 . A G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=102;Dels=0.00;FS=2.830;HaplotypeScore=8.9048;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.719;QD=23.96;ReadPosRankSum=2.377;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2477,261,0 chrV 248998 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.48;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2655,276,0 chrV 249123 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.65;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2770,274,0 chrV 249376 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.322;QD=24.60;ReadPosRankSum=1.629;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3370,354,0 chrV 249511 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.522;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.525;QD=22.93;ReadPosRankSum=1.703;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2762,300,0 chrV 249613 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=24.19;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2645,279,0 chrV 249616 . T A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=-0.955;QD=25.03;ReadPosRankSum=1.667;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2711,276,0 chrV 249629 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=24.04;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2389,246,0 chrV 249705 . C A 2683 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7326;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=25.80;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2716,285,0 chrV 249787 . G A 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;DP=101;Dels=0.00;FS=4.240;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=34.66;MQ0=0;MQRankSum=-1.674;QD=0.93;ReadPosRankSum=-6.065;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:84,15:101:99:124,0,1418 chrV 249834 . T A 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=-0.346;QD=22.08;ReadPosRankSum=1.694;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2020,210,0 chrV 249909 . A T 1031 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=21.94;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1064,105,0 chrV 249919 . G C 811 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=24.8558;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=1;QD=20.27;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:844,90,0 chrV 250329 . C A 1144 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=1;QD=17.07;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1177,120,0 chrV 250455 . A T 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=0.000;QD=24.67;ReadPosRankSum=1.619;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2303,234,0 chrV 250528 . C A 2096 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.4300;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.66;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2129,216,0 chrV 250573 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=26.90;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2642,267,0 chrV 250605 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.493;QD=23.75;ReadPosRankSum=1.676;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2954,303,0 chrV 250625 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.16;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2860,288,0 chrV 250852 . G T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.28;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3742,396,0 chrV 251006 . C G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.47;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3238,339,0 chrV 251267 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.69;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3244,339,0 chrV 251309 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.21;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3210,330,0 chrV 251651 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2170,219,0 chrV 251721 . G A 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.130;QD=25.40;ReadPosRankSum=-1.658;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2421,227,0 chrV 251756 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.73;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2439,246,0 chrV 251925 . T A 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=3.007;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.295;QD=23.41;ReadPosRankSum=2.412;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3123,330,0 chrV 252072 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6667;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.27;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4445,451,0 chrV 252103 . C A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.0104;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.36;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3854,405,0 chrV 252647 . A C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.45;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3487,366,0 chrV 254274 . T A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3349,354,0 chrV 254385 . C A 3049 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.47;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3082,310,0 chrV 254391 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.30;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3300,328,0 chrV 255332 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.98;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3355,342,0 chrV 255344 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.96;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3294,337,0 chrV 255489 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.03;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:3000,303,0 chrV 256159 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.97;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1627,171,0 chrV 256289 . A G 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.236;QD=21.25;ReadPosRankSum=2.360;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1202,126,0 chrV 256376 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.58;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2024,210,0 chrV 256810 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=196;Dels=0.00;FS=3.288;HaplotypeScore=11.1280;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.607;QD=23.82;ReadPosRankSum=1.679;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4669,507,0 chrV 256999 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4701,499,0 chrV 257927 . T G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=6.868;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.708;QD=23.30;ReadPosRankSum=1.708;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3285,340,0 chrV 258078 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1179,120,0 chrV 258579 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2624,264,0 chrV 258666 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.8427;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.87;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3160,342,0 chrV 259743 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=54.7827;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.69;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1810,183,0 chrV 260054 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=1.234;QD=19.73;ReadPosRankSum=1.709;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3051,321,0 chrV 260078 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.39;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3673,385,0 chrV 260511 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.99;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2480,246,0 chrV 261193 . A T 2514 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.41;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2547,258,0 chrV 261299 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=23.47;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2380,255,0 chrV 261333 . A T 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-1.393;QD=19.00;ReadPosRankSum=2.290;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1496,153,0 chrV 261338 . T A 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=6.347;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-1.381;QD=20.10;ReadPosRankSum=1.431;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1420,150,0 chrV 261345 . A C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-1.267;QD=22.10;ReadPosRankSum=1.681;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1514,159,0 chrV 261462 . T A 445 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=13.48;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:48:478,48,0 chrV 261787 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.10;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2943,295,0 chrV 262042 . C T 5026.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.88;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5026,508,0 chrV 262066 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.95;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5423,547,0 chrV 262212 . A G 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.242;QD=23.17;ReadPosRankSum=1.685;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5097,526,0 chrV 262352 . G T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0538;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.95;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3511,372,0 chrV 262462 . A T 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=2.548;HaplotypeScore=9.1450;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.254;QD=22.38;ReadPosRankSum=2.886;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2607,279,0 chrV 262797 . T C 3164 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.72;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3197,336,0 chrV 263456 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.90;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2749,285,0 chrV 263549 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=2.990;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.097;QD=24.31;ReadPosRankSum=0.898;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2731,276,0 chrV 263652 . T C 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=7.217;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.457;QD=23.45;ReadPosRankSum=2.368;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2870,300,0 chrV 264790 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2037,216,0 chrV 265185 . T C 5781.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.0280;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5781,610,0 chrV 265533 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.2631;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4346,468,0 chrV 265623 . C T 5343.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.81;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:5343,535,0 chrV 265651 . T G 5050.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.75;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5050,520,0 chrV 265690 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.206;QD=20.87;ReadPosRankSum=2.942;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3297,348,0 chrV 265875 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.70;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2500,261,0 chrV 265876 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.31;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2488,264,0 chrV 265937 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.53;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1182,126,0 chrV 266216 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1393,147,0 chrV 266308 . A C 1986 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.13;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:2019,210,0 chrV 266991 . T C 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=212;Dels=0.00;FS=6.083;HaplotypeScore=18.1110;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.356;QD=24.75;ReadPosRankSum=2.345;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:5247,553,0 chrV 267318 . T C 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.5191;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.783;QD=24.37;ReadPosRankSum=1.702;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,229:233:99:5678,615,0 chrV 267673 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.0863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5305,538,0 chrV 267773 . A T 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=4.698;HaplotypeScore=8.2860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.029;QD=25.89;ReadPosRankSum=1.673;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4583,481,0 chrV 268009 . T A 3103 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.16;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3136,330,0 chrV 268219 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=16.55;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:960,99,0 chrV 268231 . C T 836 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.00;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:869,93,0 chrV 268451 . A C 2766 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.38;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2799,291,0 chrV 268713 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.35;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2827,280,0 chrV 268771 . A T 2855 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.40;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2888,291,0 chrV 268978 . G T 2555 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=24.33;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2588,267,0 chrV 269034 . A C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.173;QD=23.12;ReadPosRankSum=1.646;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2807,291,0 chrV 269057 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.229;QD=22.36;ReadPosRankSum=1.703;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2694,276,0 chrV 269239 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.49;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2012,207,0 chrV 269894 . T C 2347 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=24.20;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2380,255,0 chrV 269910 . G T 2344 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.42;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2377,246,0 chrV 269950 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.657;QD=22.09;ReadPosRankSum=1.672;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2595,276,0 chrV 270049 . A T 2374 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.0454;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.78;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2407,252,0 chrV 270213 . A T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8044;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=24.87;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3755,382,0 chrV 270233 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=24.31;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3379,354,0 chrV 270283 . G T 2999 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.07;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3032,312,0 chrV 270466 . C A 2522 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.19;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2555,261,0 chrV 270473 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.188;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.097;QD=20.84;ReadPosRankSum=1.677;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2638,276,0 chrV 271135 . T A 4954.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=25.28;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4954,499,0 chrV 271156 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=23.58;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4481,451,0 chrV 271177 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=23.50;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3831,394,0 chrV 271202 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.106;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.594;QD=21.96;ReadPosRankSum=1.656;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3063,318,0 chrV 271319 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=21.13;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1829,195,0 chrV 271332 . A G 1421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;MQRankSum=0.378;QD=18.95;ReadPosRankSum=-0.773;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1454,171,0 chrV 271333 . T A 1455 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=6.2793;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=19.40;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1488,171,0 chrV 271334 . T C 1490 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=1.003;QD=19.61;ReadPosRankSum=-1.048;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1523,171,0 chrV 271367 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=20.16;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1404,147,0 chrV 271374 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=22.26;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1547,162,0 chrV 271409 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.79;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1742,177,0 chrV 271934 . T C 5728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=246;Dels=0.00;FS=11.108;HaplotypeScore=19.2098;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.318;QD=23.28;ReadPosRankSum=2.389;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:5728,604,0 chrV 272025 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3807,402,0 chrV 272169 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=119;Dels=0.00;FS=6.086;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.381;QD=22.64;ReadPosRankSum=2.890;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2727,285,0 chrV 272259 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.536;QD=24.59;ReadPosRankSum=2.415;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3442,363,0 chrV 272511 . C T 2982 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=25.06;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3015,307,0 chrV 272517 . T C 2757 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=4.376;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.467;QD=21.88;ReadPosRankSum=1.622;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2790,288,0 chrV 272521 . G A 2925 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=23.21;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2958,300,0 chrV 272655 . C A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.14;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3854,382,0 chrV 273721 . T A 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0761;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.882;QD=23.60;ReadPosRankSum=1.711;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3846,391,0 chrV 274390 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.38;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2620,279,0 chrV 276619 . G T 3135 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.23;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3168,345,0 chrV 276799 . A C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=3.165;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.659;QD=22.01;ReadPosRankSum=1.708;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3224,339,0 chrV 281160 . G A 4838.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.9815;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.87;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4838,493,0 chrV 283424 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=7.037;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.254;QD=23.20;ReadPosRankSum=2.417;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3480,360,0 chrV 283533 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.63;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3462,355,0 chrV 283807 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.92;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3599,358,0 chrV 283977 . C G 2649 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2682,288,0 chrV 286762 . G A 4768.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.83;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4768,481,0 chrV 288745 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.262;QD=22.47;ReadPosRankSum=1.653;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3021,315,0 chrV 288900 . C G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.2321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3619,378,0 chrV 289034 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.83;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4675,478,0 chrV 289447 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.274;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.039;QD=24.81;ReadPosRankSum=1.671;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4242,445,0 chrV 289889 . G A 3159 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=11;QD=23.40;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3192,330,0 chrV 290339 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=2;QD=23.27;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3351,340,0 chrV 290603 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.297;QD=23.63;ReadPosRankSum=1.714;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4514,483,0 chrV 293301 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0348;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.36;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3855,388,0 chrV 294112 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=197;Dels=0.00;FS=3.456;HaplotypeScore=16.3601;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.199;QD=21.61;ReadPosRankSum=1.714;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4257,450,0 chrV 298190 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1386,144,0 chrV 298538 . T C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.393;QD=24.05;ReadPosRankSum=1.706;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3232,334,0 chrV 298743 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.650;QD=24.34;ReadPosRankSum=1.705;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3124,324,0 chrV 298831 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3027,321,0 chrV 300055 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3336,334,0 chrV 300738 . G A 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.482;QD=24.43;ReadPosRankSum=1.607;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4788,513,0 chrV 301990 . T C 3107 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.09;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3140,330,0 chrV 302655 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3642,379,0 chrV 308135 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=25.85;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2876,294,0 chrV 308710 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.07;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2055,213,0 chrV 309995 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.666;QD=25.19;ReadPosRankSum=1.673;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2980,303,0 chrV 310175 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4210,430,0 chrV 311950 . G A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.02;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4780,490,0 chrV 312465 . A G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.695;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.613;QD=23.97;ReadPosRankSum=1.660;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2358,246,0 chrV 312677 . G A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.46;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4657,475,0 chrV 313206 . C A 7260.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=19.5984;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.86;SB=-3.967e+03 GT:AD:DP:GQ:PL 1/1:0,289:292:99:7260,730,0 chrV 314857 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.21;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3390,357,0 chrV 315976 . T A 2715 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2748,279,0 chrV 317740 . G T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.65;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3525,361,0 chrV 317884 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3366,351,0 chrV 318142 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.21;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3757,376,0 chrV 318325 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.62;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3484,352,0 chrV 320971 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.18;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3273,337,0 chrV 321624 . G T 2769 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2802,285,0 chrV 321717 . C A 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2036;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.03;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2346,249,0 chrV 322554 . G C 2622 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.00;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2655,285,0 chrV 322797 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3796,379,0 chrV 326897 . T C 5260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=3.089;HaplotypeScore=18.8030;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.052;QD=23.48;ReadPosRankSum=1.717;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5260,553,0 chrV 327363 . A C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=177;Dels=0.00;FS=10.965;HaplotypeScore=13.2941;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.431;QD=22.01;ReadPosRankSum=2.914;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:3,172:177:99:3896,406,0 chrV 327970 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.99;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2346,231,0 chrV 328271 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=26.74;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2680,270,0 chrV 331977 . G A 4919.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4919,499,0 chrV 332072 . G C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.1065;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.65;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4313,451,0 chrV 332139 . G A 5368.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.71;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5368,538,0 chrV 332272 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0422;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=25.51;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4464,457,0 chrV 332460 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.92;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2883,294,0 chrV 332482 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.77;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3242,322,0 chrV 332507 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3551;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.88;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3053,310,0 chrV 332539 . C G 2662 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.30;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2695,291,0 chrV 333114 . A G 958 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.0641;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.28;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:991,105,0 chrV 333160 . A T 1438 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=6.5486;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.70;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1471,153,0 chrV 333164 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.630;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8829;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.909;QD=18.70;ReadPosRankSum=3.613;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:7,76:83:99:1585,168,0 chrV 333251 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=26.94;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3394,337,0 chrV 333273 . G T 2508 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.44;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2541,258,0 chrV 333437 . A G 5762.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.52;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5762,613,0 chrV 333575 . C T 5229.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.9856;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.24;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5229,573,0 chrV 333619 . C T 4832.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.57;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4832,493,0 chrV 333669 . C G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.89;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3885,403,0 chrV 333688 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.54;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3985,421,0 chrV 333779 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.85;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4218,450,0 chrV 334031 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.624;QD=24.99;ReadPosRankSum=1.689;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4024,424,0 chrV 334132 . C T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.53;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5459,559,0 chrV 334139 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.36;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4805,510,0 chrV 334216 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.73;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4523,472,0 chrV 334274 . T G 6165.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.26;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6165,655,0 chrV 334331 . T C 6309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=264;Dels=0.00;FS=8.894;HaplotypeScore=18.2250;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.277;QD=23.90;ReadPosRankSum=3.381;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:4,257:264:99:6309,670,0 chrV 334416 . G T 9082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=24.0132;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.618;QD=26.71;ReadPosRankSum=1.681;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:1,338:340:99:9082,937,0 chrV 334487 . G A 8837.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=20.7376;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.32;SB=-4.278e+03 GT:AD:DP:GQ:PL 1/1:0,346:349:99:8837,907,0 chrV 334623 . G C 9135.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=13.0049;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.39;SB=-4.309e+03 GT:AD:DP:GQ:PL 1/1:0,402:408:99:9135,952,0 chrV 334650 . C A 9513.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.09;SB=-4.298e+03 GT:AD:DP:GQ:PL 1/1:0,409:412:99:9513,988,0 chrV 334750 . C T 7199.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=14.5013;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.49;SB=-3.648e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:7199,769,0 chrV 334787 . A G 6723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=314;Dels=0.00;FS=9.098;HaplotypeScore=27.4406;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.854;QD=21.41;ReadPosRankSum=3.373;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:4,310:314:99:6723,727,0 chrV 335537 . C A 5410.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=25.89;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5410,547,0 chrV 335604 . T C 5703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=271;Dels=0.00;FS=7.467;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.535;QD=21.04;ReadPosRankSum=2.413;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:2,269:271:99:5703,592,0 chrV 335632 . G A 6693.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=11.3399;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.38;SB=-3.828e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6693,694,0 chrV 335812 . T C 6767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=284;Dels=0.00;FS=2.935;HaplotypeScore=28.2425;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.065;QD=23.83;ReadPosRankSum=2.424;SB=-3.311e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:6767,697,0 chrV 336529 . C G 6358.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.4777;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.47;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:6358,673,0 chrV 337672 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.03;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1378,144,0 chrV 343502 . C A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.88;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3871,391,0 chrV 343588 . T G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.97;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3396,357,0 chrV 346707 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.07;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4061,409,0 chrV 349236 . C T 4923.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.01;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4923,505,0 chrV 349582 . T C 7741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=297;Dels=0.00;FS=5.692;HaplotypeScore=9.8932;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.247;QD=26.06;ReadPosRankSum=2.936;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:3,294:297:99:7741,790,0 chrV 349661 . C T 6775.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.47;SB=-3.634e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:6775,679,0 chrV 349710 . G A 7166.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.46;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7166,724,0 chrV 350741 . C T 5797.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.20;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5797,583,0 chrV 350876 . G A 5819.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.6680;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.15;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5819,586,0 chrV 352394 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.647;QD=24.36;ReadPosRankSum=2.362;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:4190,436,0 chrV 352574 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.860;QD=26.78;ReadPosRankSum=1.635;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3829,388,0 chrV 353481 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.55;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2955,309,0 chrV 353583 . C A 2147 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.47;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2180,231,0 chrV 353654 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6558;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.21;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2575,255,0 chrV 353854 . C A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.94;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3244,348,0 chrV 354174 . T A 2481 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.81;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2514,258,0 chrV 354761 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=24.59;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3763,373,0 chrV 354793 . T G 4117.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=24.65;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4117,430,0 chrV 355019 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.483;QD=19.99;ReadPosRankSum=1.682;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2812,285,0 chrV 355336 . C G 2908 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.84;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2941,315,0 chrV 355397 . A G 2772 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.80;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2805,303,0 chrV 356079 . G T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.69;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3417,346,0 chrV 356220 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=129;Dels=0.00;FS=3.748;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.487;QD=25.47;ReadPosRankSum=1.678;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3285,337,0 chrV 356363 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3622,364,0 chrV 356837 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.77;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3659,384,0 chrV 357010 . C A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.18;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4716,499,0 chrV 357876 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.82;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2093,210,0 chrV 359292 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.22;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3911,417,0 chrV 360247 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.420;QD=22.66;ReadPosRankSum=1.697;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2299,234,0 chrV 360409 . C A 1671 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.94;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1704,174,0 chrV 360424 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.607;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.489;QD=23.61;ReadPosRankSum=1.688;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1898,201,0 chrV 360939 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.330;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.941;QD=23.95;ReadPosRankSum=1.705;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3122,333,0 chrV 360974 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.604;QD=27.01;ReadPosRankSum=1.706;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3646,376,0 chrV 361243 . T C 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=219;Dels=0.00;FS=6.327;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.470;QD=23.92;ReadPosRankSum=2.404;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:5238,565,0 chrV 362294 . T A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1435;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.81;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3308,357,0 chrV 362559 . T C 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=194;Dels=0.00;FS=3.102;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.920;QD=23.80;ReadPosRankSum=-1.425;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4618,465,0 chrV 362609 . C T 5657.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.18;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5657,607,0 chrV 362832 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4118,418,0 chrV 363002 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.39;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3439,343,0 chrV 363470 . A G 1872 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=19.79;MQ0=121;QD=9.27;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:61,140:202:99:1905,201,0 chrV 363833 . T C 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=1.345;QD=24.43;ReadPosRankSum=2.393;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2158,240,0 chrV 364042 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.56;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2831,288,0 chrV 364059 . T A 2883 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.70;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2916,292,0 chrV 364082 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.44;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2772,303,0 chrV 364150 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2810,280,0 chrV 364536 . C G 3136 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3169,330,0 chrV 366285 . G A 4727.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.86;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4727,472,0 chrV 366348 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5328;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.81;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4217,430,0 chrV 367786 . G A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4212,421,0 chrV 368184 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3062,312,0 chrV 368706 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=145;Dels=0.00;FS=3.015;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.992;QD=25.07;ReadPosRankSum=2.416;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3635,376,0 chrV 368771 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2871,300,0 chrV 368857 . T G 2773 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.32;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2806,297,0 chrV 369120 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2393;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.86;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3698,382,0 chrV 369257 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=7.9549;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.956;QD=22.30;ReadPosRankSum=1.702;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2620,276,0 chrV 369931 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.55;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2611,267,0 chrV 370893 . A T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=25.23;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3456,352,0 chrV 370904 . A G 3099 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.79;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3132,336,0 chrV 371216 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.25;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3130,313,0 chrV 371457 . T G 3070 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3103,330,0 chrV 371849 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.4949;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.74;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3544,358,0 chrV 371859 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.9288;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.25;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3017,306,0 chrV 371903 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5904;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=16.83;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2355,255,0 chrV 371929 . T C 2305 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5672;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=16.82;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2338,249,0 chrV 372057 . T C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=7.830;HaplotypeScore=11.0160;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.047;QD=20.87;ReadPosRankSum=1.694;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1953,210,0 chrV 372248 . T A 1191 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.81;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1224,123,0 chrV 372263 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=53.6029;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.84;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1144,120,0 chrV 372487 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=25.72;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2554,264,0 chrV 372581 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2838,300,0 chrV 372742 . A T 2170 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.66;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2203,228,0 chrV 372989 . A C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.054;QD=24.99;ReadPosRankSum=1.694;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2332,243,0 chrV 373736 . A G 5318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=229;Dels=0.00;FS=5.483;HaplotypeScore=8.4102;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.335;QD=23.22;ReadPosRankSum=2.899;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5318,544,0 chrV 374698 . G C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3262,345,0 chrV 374954 . C G 2234 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.48;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2267,243,0 chrV 375017 . C T 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.319;QD=24.52;ReadPosRankSum=0.440;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1676,154,0 chrV 375862 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3671,387,0 chrV 376468 . A C 2679 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2712,288,0 chrV 377190 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.57;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4422,469,0 chrV 377358 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.69;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4518,451,0 chrV 378140 . A T 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=23.64;ReadPosRankSum=1.684;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3404,343,0 chrV 378586 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.51;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3530,358,0 chrV 378702 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=97;Dels=0.00;FS=6.148;HaplotypeScore=6.7546;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;MQRankSum=2.011;QD=23.75;ReadPosRankSum=2.841;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:3,92:97:99:2337,249,0 chrV 379332 . C A 5200.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5200,526,0 chrV 382369 . C A 640 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.19;MQ0=0;QD=18.82;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:673,69,0 chrV 382808 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=2.997;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.310;QD=24.49;ReadPosRankSum=2.270;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:3070,321,0 chrV 383543 . T G 2480 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2513,261,0 chrV 384503 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.342;QD=25.07;ReadPosRankSum=1.666;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3936,420,0 chrV 386503 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2918,295,0 chrV 386623 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.13;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3262,325,0 chrV 387695 . T A 2215 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.10;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2248,225,0 chrV 389009 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.425;QD=23.74;ReadPosRankSum=1.689;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3775,396,0 chrV 389531 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.617;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.312;QD=24.25;ReadPosRankSum=1.689;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3929,412,0 chrV 389576 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6317;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.07;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3310,369,0 chrV 389821 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=3.076;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.026;QD=21.81;ReadPosRankSum=0.879;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4341,439,0 chrV 389822 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.99;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4267,445,0 chrV 389845 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.00;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3990,406,0 chrV 390163 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.43;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2859,300,0 chrV 390437 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1599,162,0 chrV 390625 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2806,288,0 chrV 392282 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.238;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.454;QD=22.97;ReadPosRankSum=1.682;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3180,342,0 chrV 392305 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.36;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2883,306,0 chrV 393496 . T A 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.043;QD=25.68;ReadPosRankSum=1.695;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4777,481,0 chrV 393768 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.40;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2986,298,0 chrV 393855 . A G 2801 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.18;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2834,291,0 chrV 394021 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4046;MLEAC=2;MLEAF=1.00;MQ=61.59;MQ0=0;QD=26.50;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3027,309,0 chrV 394151 . C G 2378 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=25.30;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2411,252,0 chrV 394357 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.11;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4168,447,0 chrV 394911 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.55;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2536,270,0 chrV 395447 . C T 5496.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.00;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5496,547,0 chrV 395449 . G T 5293.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.33;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5293,535,0 chrV 396860 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.779;DP=133;Dels=0.00;FS=11.242;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.906;QD=23.95;ReadPosRankSum=3.743;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:5,127:133:99:3219,339,0 chrV 397753 . T G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.132;QD=24.62;ReadPosRankSum=1.686;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1904,201,0 chrV 398975 . T G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=145;Dels=0.00;FS=3.033;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.743;QD=25.64;ReadPosRankSum=2.398;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3718,390,0 chrV 399140 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4005,403,0 chrV 399487 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0217;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.36;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4007,406,0 chrV 399921 . T C 5613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=254;Dels=0.00;FS=2.555;HaplotypeScore=18.3716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=22.10;ReadPosRankSum=2.948;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:5613,598,0 chrV 400318 . A G 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=256;Dels=0.00;FS=6.027;HaplotypeScore=20.0681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.201;QD=24.86;ReadPosRankSum=2.957;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:3,252:256:99:6365,661,0 chrV 400481 . T C 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=233;Dels=0.00;FS=12.386;HaplotypeScore=19.6673;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.868;QD=22.32;ReadPosRankSum=3.408;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:4,227:233:99:5200,547,0 chrV 400656 . G T 6480.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=26.4080;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.74;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:6480,664,0 chrV 400856 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.9715;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.68;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,262:267:99:5788,586,0 chrV 400882 . A G 5813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=257;Dels=0.00;FS=2.979;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.196;QD=22.62;ReadPosRankSum=2.402;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5813,610,0 chrV 400915 . T C 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=275;Dels=0.00;FS=3.355;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.027;QD=21.23;ReadPosRankSum=1.719;SB=-3.554e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5838,622,0 chrV 401106 . G T 5682.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.60;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5682,580,0 chrV 401545 . A G 4785.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.1613;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.45;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4785,505,0 chrV 402468 . G A 4876.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.6966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4876,493,0 chrV 403502 . G C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.27;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3421,366,0 chrV 403529 . T C 3706.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.74;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3706,385,0 chrV 403557 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=179;Dels=0.00;FS=3.031;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-2.326;QD=22.69;ReadPosRankSum=2.408;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4062,435,0 chrV 404023 . A C 3200 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.06;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3233,342,0 chrV 404317 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.14;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3717,388,0 chrV 406154 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=169;Dels=0.00;FS=7.222;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.272;QD=24.68;ReadPosRankSum=2.405;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:4171,439,0 chrV 407658 . C A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.7666;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.14;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3698,373,0 chrV 407664 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.67;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3679,384,0 chrV 407957 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.76;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3920,397,0 chrV 408422 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.002;QD=24.74;ReadPosRankSum=1.709;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3661,384,0 chrV 408686 . C G 2564 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.74;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2597,273,0 chrV 409170 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.35;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3075,321,0 chrV 409510 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.58;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3007,303,0 chrV 409900 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2697,276,0 chrV 410293 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.29;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2851,289,0 chrV 410311 . C G 2700 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.13;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2733,285,0 chrV 410317 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.43;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2690,270,0 chrV 410473 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.29;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4123,444,0 chrV 410732 . T A 6543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.118;QD=24.14;ReadPosRankSum=1.719;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:6543,712,0 chrV 410808 . G A 6602.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=15.6692;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.61;SB=-3.839e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:6602,673,0 chrV 410863 . A G 6466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=20.4687;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=-1.699;QD=20.40;ReadPosRankSum=1.699;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:1,314:317:99:6466,676,0 chrV 410947 . G A 6950.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.56;SB=-3.764e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6950,712,0 chrV 412759 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.54;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1701,174,0 chrV 412969 . T G 225 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.5140;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=15.00;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:258,30,0 chrV 413281 . T A 2283 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2316,246,0 chrV 415310 . T C 5430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=231;Dels=0.00;FS=7.653;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=23.51;ReadPosRankSum=2.386;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5430,580,0 chrV 416792 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2610,267,0 chrV 416841 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3113,313,0 chrV 416905 . T G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.485;QD=23.79;ReadPosRankSum=1.704;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3007,321,0 chrV 417320 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=153;Dels=0.00;FS=17.136;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.134;QD=24.79;ReadPosRankSum=2.953;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:3,147:153:99:3793,408,0 chrV 417388 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.01;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3850,397,0 chrV 417511 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.73;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4414,445,0 chrV 417748 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.24;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3137,316,0 chrV 417790 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.841;QD=24.71;ReadPosRankSum=1.699;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2652,282,0 chrV 417952 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2318,234,0 chrV 418504 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8847;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.44;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2893,303,0 chrV 418792 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.22;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3881,388,0 chrV 418874 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8900;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.52;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4517,460,0 chrV 418981 . T C 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=3.188;HaplotypeScore=11.8265;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.450;QD=24.13;ReadPosRankSum=1.715;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4875,511,0 chrV 419536 . T G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.173;QD=24.60;ReadPosRankSum=1.703;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3010,318,0 chrV 419568 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.60;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2465,249,0 chrV 419631 . T G 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.083;QD=17.96;ReadPosRankSum=1.701;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2045,213,0 chrV 420040 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=11.1491;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.146;QD=21.98;ReadPosRankSum=2.334;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3319,354,0 chrV 420266 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.9894;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.64;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3852,397,0 chrV 420277 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-1.485;QD=20.93;ReadPosRankSum=1.691;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3516,355,0 chrV 420279 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.328;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.183;QD=20.39;ReadPosRankSum=1.671;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3467,363,0 chrV 420292 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.21;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3420,366,0 chrV 420376 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.9273;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.14;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4998,534,0 chrV 420432 . A G 4818.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.58;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4818,493,0 chrV 420478 . C A 4920.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8509;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=25.63;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4920,496,0 chrV 420596 . C A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=24.86;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4822,484,0 chrV 420619 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.22;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3888,409,0 chrV 421040 . C T 1417 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1450,150,0 chrV 421193 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3324,366,0 chrV 422000 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.45;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3541,349,0 chrV 422021 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.81;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3559,367,0 chrV 422226 . A C 4771.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.16;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4771,490,0 chrV 422255 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=4.842;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.173;QD=22.65;ReadPosRankSum=1.695;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4213,445,0 chrV 422511 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4119,421,0 chrV 422613 . G C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.97;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3643,390,0 chrV 423233 . G C 2569 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.73;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2602,279,0 chrV 423827 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.651;QD=24.91;ReadPosRankSum=1.708;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3512,375,0 chrV 424461 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.24;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1476,150,0 chrV 424638 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=25.49;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2276,228,0 chrV 425002 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1451,150,0 chrV 425334 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.10;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3976,406,0 chrV 425833 . G C 2815 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2848,303,0 chrV 425902 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.58;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3216,336,0 chrV 425923 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.030;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.382;QD=23.46;ReadPosRankSum=1.249;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3083,310,0 chrV 426331 . C A 2498 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.92;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2531,270,0 chrV 426332 . A T 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.653;DP=129;Dels=0.00;FS=11.718;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.898;QD=18.94;ReadPosRankSum=3.530;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:5,124:129:99:2476,270,0 chrV 426357 . G T 2401 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.44;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2434,243,0 chrV 426433 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=23.41;ReadPosRankSum=1.687;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3605,381,0 chrV 426583 . C A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.47;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4380,465,0 chrV 426778 . G T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4025,409,0 chrV 426961 . T C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4097,427,0 chrV 427684 . A G 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.288;QD=21.99;ReadPosRankSum=1.714;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4310,457,0 chrV 427920 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.76;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,149:155:99:3683,393,0 chrV 428227 . G A 4342.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.27;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4342,483,0 chrV 428251 . T G 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=189;Dels=0.00;FS=5.222;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.086;QD=23.55;ReadPosRankSum=2.887;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:3,183:189:99:4450,469,0 chrV 428507 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.74;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3513,361,0 chrV 428593 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.96;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2357,249,0 chrV 428611 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.00;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2310,237,0 chrV 428644 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=3.865;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.247;QD=22.89;ReadPosRankSum=1.701;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2643,282,0 chrV 428691 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.600;QD=26.15;ReadPosRankSum=1.679;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3452,357,0 chrV 428860 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.01;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3694,370,0 chrV 428948 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.789;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.975;QD=23.48;ReadPosRankSum=2.397;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3287,351,0 chrV 429094 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.520;QD=25.69;ReadPosRankSum=1.697;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2602,279,0 chrV 429408 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=27.29;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4530,451,0 chrV 429460 . A C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.014;QD=21.02;ReadPosRankSum=1.946;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3552,348,0 chrV 429466 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5967;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.95;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4119,409,0 chrV 429589 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2241;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.156;QD=21.31;ReadPosRankSum=1.693;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3794,394,0 chrV 429823 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.454;HaplotypeScore=10.5862;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.492;QD=24.07;ReadPosRankSum=1.684;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3466,363,0 chrV 430009 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=26.57;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3933,394,0 chrV 430033 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.25;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3589,381,0 chrV 430454 . A T 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=2.833;HaplotypeScore=7.2486;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.088;QD=21.03;ReadPosRankSum=2.372;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2683,285,0 chrV 430574 . A G 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.341;DP=99;Dels=0.00;FS=4.286;HaplotypeScore=11.3659;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.375;QD=10.32;ReadPosRankSum=1.063;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:5,94:99:84:1055,84,0 chrV 430597 . A G 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=71;Dels=0.00;FS=6.874;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.639;QD=15.58;ReadPosRankSum=2.309;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,68:71:99:1139,126,0 chrV 430620 . T G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=3.007;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.913;QD=19.37;ReadPosRankSum=2.322;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1544,168,0 chrV 430652 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.12;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2623,270,0 chrV 430822 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=8.648;HaplotypeScore=7.0356;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.274;QD=24.41;ReadPosRankSum=2.416;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3613,375,0 chrV 430837 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=23.32;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2901,309,0 chrV 430852 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=4.234;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.304;QD=20.82;ReadPosRankSum=1.702;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2427,261,0 chrV 430899 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.538;QD=20.09;ReadPosRankSum=1.653;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1781,183,0 chrV 430927 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=4.702;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.810;QD=24.64;ReadPosRankSum=1.620;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3088,313,0 chrV 430967 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=13.864;HaplotypeScore=10.6246;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.232;QD=21.81;ReadPosRankSum=2.909;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3174,336,0 chrV 431050 . C A 2379 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.1932;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.03;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2412,258,0 chrV 431114 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4329;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.03;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2974,295,0 chrV 431224 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.82;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3796,397,0 chrV 431454 . G T 2108 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=21.96;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2141,237,0 chrV 431836 . C T 189.03 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=2.63;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,72:72:24:222,24,0 chrV 435043 . G C 2921 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=23.00;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2954,315,0 chrV 435863 . A T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=26.89;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3307,340,0 chrV 436312 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=76;Dels=0.00;FS=7.874;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.795;QD=26.50;ReadPosRankSum=2.385;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:2047,213,0 chrV 436868 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2852,288,0 chrV 438230 . T A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.98;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3947,423,0 chrV 438396 . G A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.0086;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.83;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4544,466,0 chrV 438514 . G C 2373 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.18;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2406,258,0 chrV 438684 . C A 986 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=17.61;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1019,102,0 chrV 438837 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=28.26;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2576,253,0 chrV 439255 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3752;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.82;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4390,466,0 chrV 439285 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.0153;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.87;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4327,436,0 chrV 442211 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.314;QD=21.69;ReadPosRankSum=1.716;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4707,499,0 chrV 442543 . A G 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=194;Dels=0.00;FS=10.382;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.016;QD=23.47;ReadPosRankSum=2.871;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4554,466,0 chrV 442568 . T G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.366;QD=23.02;ReadPosRankSum=1.674;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4190,445,0 chrV 442769 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2967;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.60;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3175,325,0 chrV 449626 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.59;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrV 449629 . C T 56.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:89,9,0 chrV 449630 . A T 70.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=11.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:103,12,0 chrV 450386 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2882,309,0 chrV 451448 . T G 3059 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3092,327,0 chrV 455676 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.146;QD=25.35;ReadPosRankSum=1.708;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3599,378,0 chrV 456087 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3439,360,0 chrV 458086 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3270,334,0 chrV 460028 . C G 5310.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.65;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5310,559,0 chrV 460661 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3783,405,0 chrV 462226 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=110.1819;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=22.35;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2939,306,0 chrV 462249 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.07;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2625,270,0 chrV 462407 . A T 2439 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=24.15;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2472,249,0 chrV 462446 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=21.08;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2120,219,0 chrV 462447 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=21.01;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2113,219,0 chrV 463250 . G A 6883.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=26.1314;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.59;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6883,688,0 chrV 464103 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4343,451,0 chrV 464192 . A G 5844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=3.026;HaplotypeScore=13.3990;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.286;QD=23.38;ReadPosRankSum=2.361;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5844,601,0 chrV 464291 . T C 5912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=242;Dels=0.00;FS=2.947;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.362;QD=24.43;ReadPosRankSum=2.419;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5912,628,0 chrV 464494 . G A 6386.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.3248;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.28;SB=-3.363e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6386,652,0 chrV 464549 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.0255;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.91;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4759,505,0 chrV 465301 . T G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=138;Dels=0.00;FS=2.822;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.529;QD=24.54;ReadPosRankSum=2.378;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3387,354,0 chrV 467553 . T C 5720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=246;Dels=0.00;FS=9.968;HaplotypeScore=18.2896;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.531;QD=23.25;ReadPosRankSum=2.963;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:5720,592,0 chrV 467724 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=201;Dels=0.00;FS=2.570;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.996;QD=23.35;ReadPosRankSum=2.401;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4694,499,0 chrV 468178 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.04;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2325,246,0 chrV 468183 . C G 2232 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.78;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2265,234,0 chrV 468194 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.80;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2300,240,0 chrV 468269 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.28;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3060,310,0 chrV 468307 . G T 3015 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.67;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3048,318,0 chrV 468390 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1600;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.64;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4513,460,0 chrV 468645 . T C 6632.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=17.4293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.18;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6632,709,0 chrV 469150 . T G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.15;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4341,454,0 chrV 469424 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.782;QD=22.76;ReadPosRankSum=1.701;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2605,282,0 chrV 470796 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3232,342,0 chrV 471259 . T C 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7626;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.661;QD=23.68;ReadPosRankSum=1.643;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4617,484,0 chrV 473821 . G T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.0359;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.22;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5572,574,0 chrV 478724 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2860,291,0 chrV 479188 . C A 2245 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2278,225,0 chrV 480036 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.71;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2291,240,0 chrV 480047 . G C 2041 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.07;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2074,219,0 chrV 480402 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.31;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3847,403,0 chrV 480677 . A T 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=22.70;ReadPosRankSum=1.707;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3166,339,0 chrV 480891 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.04;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3280,345,0 chrV 481233 . A G 2768 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8287;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.50;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2801,297,0 chrV 481268 . C A 2577 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.61;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2610,276,0 chrV 481400 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.674;QD=25.87;ReadPosRankSum=1.703;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3112,321,0 chrV 481448 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=131;Dels=0.00;FS=6.102;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=23.05;ReadPosRankSum=2.900;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3053,324,0 chrV 481570 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=159;Dels=0.00;FS=8.492;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.354;QD=24.92;ReadPosRankSum=2.418;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3962,412,0 chrV 481740 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=7.524;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.381;QD=22.37;ReadPosRankSum=2.404;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3646,384,0 chrV 481764 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=166;Dels=0.00;FS=3.583;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.428;QD=20.15;ReadPosRankSum=1.647;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,161:166:99:3345,360,0 chrV 481769 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.69;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3414,352,0 chrV 481967 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.36;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4928,525,0 chrV 482268 . C T 6894.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.4894;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.25;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6894,691,0 chrV 482384 . G C 5839.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.54;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5839,622,0 chrV 482408 . A G 5679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=243;Dels=0.00;FS=2.810;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.702;QD=23.37;ReadPosRankSum=2.429;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5679,586,0 chrV 482513 . A T 6962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=293;Dels=0.00;FS=5.711;HaplotypeScore=17.2820;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.134;QD=23.76;ReadPosRankSum=2.949;SB=-3.615e+03 GT:AD:DP:GQ:PL 1/1:3,290:293:99:6962,697,0 chrV 482536 . G A 5949.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.2526;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.20;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5949,634,0 chrV 483215 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.93;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2601,270,0 chrV 483316 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=27.35;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3719,382,0 chrV 483439 . C T 4156.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.64;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4156,427,0 chrV 483535 . A T 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.012;QD=23.28;ReadPosRankSum=1.629;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4702,478,0 chrV 483550 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.02;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4667,475,0 chrV 483728 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.5160;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.425;QD=23.56;ReadPosRankSum=0.939;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5041,482,0 chrV 484002 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.072;DP=209;Dels=0.00;FS=9.255;HaplotypeScore=15.4017;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.777;QD=22.37;ReadPosRankSum=3.045;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:6,203:209:99:4676,493,0 chrV 484306 . T A 2718 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2751,294,0 chrV 484412 . G C 3091 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.96;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3124,324,0 chrV 484537 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8478;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.48;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3337,340,0 chrV 484694 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.41;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3194,342,0 chrV 484787 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=163;Dels=0.00;FS=3.926;HaplotypeScore=8.6151;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.457;QD=24.38;ReadPosRankSum=0.733;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3974,378,0 chrV 484851 . T G 3152 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.18;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3185,336,0 chrV 484910 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.52;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2848,297,0 chrV 484935 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.993;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.834;QD=24.75;ReadPosRankSum=2.381;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3539,372,0 chrV 485053 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.417;QD=24.73;ReadPosRankSum=1.707;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3388,357,0 chrV 485264 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.183;QD=24.23;ReadPosRankSum=2.419;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3973,421,0 chrV 485288 . C G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=25.08;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3661,382,0 chrV 485312 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.138;QD=23.14;ReadPosRankSum=1.711;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3772,396,0 chrV 485333 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.64;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3555,375,0 chrV 485396 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8720;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.45;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3681,370,0 chrV 485579 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=24.13;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3267,339,0 chrV 485599 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.26;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2848,297,0 chrV 485875 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.84;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3424,340,0 chrV 485936 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2953,318,0 chrV 485993 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.140;QD=22.60;ReadPosRankSum=1.643;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2677,276,0 chrV 487817 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.86;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2228,240,0 chrV 488516 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=23.83;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2440,255,0 chrV 488527 . T G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.304;QD=23.08;ReadPosRankSum=1.696;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2272,234,0 chrV 488534 . A G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.516;QD=21.90;ReadPosRankSum=1.695;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2092,216,0 chrV 488556 . G C 2029 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.30;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2062,213,0 chrV 488644 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.86;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1725,174,0 chrV 488650 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.97;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1664,168,0 chrV 488666 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.75;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1403,147,0 chrV 488835 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.40;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1265,126,0 chrV 488899 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=26.69;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2195,219,0 chrV 488982 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.37;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3349,340,0 chrV 489026 . A G 4435.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.56;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4435,466,0 chrV 489169 . C A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3534;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.40;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4538,463,0 chrV 489262 . C G 4404.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.58;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4404,457,0 chrV 489341 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0482;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.95;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4366,442,0 chrV 489427 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.61;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4764,475,0 chrV 489637 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2961,301,0 chrV 491806 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.567;QD=23.99;ReadPosRankSum=1.685;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3550,378,0 chrV 492129 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8423;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.75;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1512,153,0 chrV 492146 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=6.0681;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.95;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1374,147,0 chrV 492457 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=2;QD=16.29;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1043,108,0 chrV 498534 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.66;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2059,207,0 chrV 498570 . C A 2026 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.01;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:2059,210,0 chrV 499617 . A G 5456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=241;Dels=0.00;FS=2.565;HaplotypeScore=15.0689;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.029;QD=22.64;ReadPosRankSum=2.946;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5456,571,0 chrV 499745 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.38;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4145,430,0 chrV 500063 . G T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4135,415,0 chrV 500524 . C G 1735 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.44;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1768,183,0 chrV 500567 . G T 1462 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.15;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1495,156,0 chrV 500606 . T A 2450 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.50;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2483,261,0 chrV 500680 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.59;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3060,318,0 chrV 500783 . G T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=24.43;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4617,463,0 chrV 500797 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=4.453;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.017;QD=21.06;ReadPosRankSum=1.412;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3875,423,0 chrV 500798 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.266;QD=20.44;ReadPosRankSum=1.640;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3863,429,0 chrV 501338 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3363,343,0 chrV 501604 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.93;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2211,228,0 chrV 501719 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=4.742;HaplotypeScore=12.1522;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.214;QD=22.11;ReadPosRankSum=1.637;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3261,348,0 chrV 501764 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.000;QD=24.08;ReadPosRankSum=1.670;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4070,424,0 chrV 501989 . T G 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=224;Dels=0.00;FS=18.368;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.058;QD=23.22;ReadPosRankSum=3.788;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:5,216:224:99:5201,559,0 chrV 502082 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.97;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3931,391,0 chrV 502721 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.3605;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.03;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4097,418,0 chrV 502911 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.46;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3402,360,0 chrV 502929 . T A 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.380;QD=21.77;ReadPosRankSum=1.685;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3211,339,0 chrV 502939 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.563;QD=21.37;ReadPosRankSum=1.708;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3089,321,0 chrV 502995 . T A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.24;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3685,370,0 chrV 503046 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.4166;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.78;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4311,439,0 chrV 503099 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.43;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3926,417,0 chrV 503231 . G C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.83;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5116,535,0 chrV 503447 . G A 5399.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.7063;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.04;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5399,547,0 chrV 503456 . C T 5352.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.49;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5352,532,0 chrV 503618 . T C 5171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.5290;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.277;QD=23.50;ReadPosRankSum=1.685;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5171,535,0 chrV 503711 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.38;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4793,507,0 chrV 503840 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=4.593;HaplotypeScore=9.6589;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.612;QD=21.20;ReadPosRankSum=1.691;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3604,393,0 chrV 503864 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.72;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3279,342,0 chrV 503909 . T A 1918 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.5285;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.93;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1951,207,0 chrV 504013 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=4.137;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.569;QD=25.85;ReadPosRankSum=1.707;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3670,384,0 chrV 504050 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=26.29;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3576,358,0 chrV 504112 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7018;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.84;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4238,427,0 chrV 504185 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.70;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4360,439,0 chrV 504211 . A C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.37;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3331,345,0 chrV 504218 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0640;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.33;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3355,346,0 chrV 504280 . G C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.46;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3991,421,0 chrV 504324 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9998;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.98;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3397,372,0 chrV 504333 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.72;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3089,318,0 chrV 504390 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.48;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3565,364,0 chrV 504471 . T A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.53;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4370,468,0 chrV 504506 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=175;Dels=0.00;FS=12.631;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.535;QD=24.71;ReadPosRankSum=2.960;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4324,457,0 chrV 504710 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=2.923;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.233;QD=20.49;ReadPosRankSum=2.337;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3585,381,0 chrV 504711 . A T 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=2.923;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.247;QD=21.40;ReadPosRankSum=2.421;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3724,385,0 chrV 504723 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.71;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3915,397,0 chrV 504739 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.56;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3560,370,0 chrV 504934 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=25.07;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3635,384,0 chrV 505198 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2797,285,0 chrV 506069 . C T 6751.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.4843;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=26.47;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6751,685,0 chrV 506330 . T C 6269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=263;Dels=0.00;FS=9.816;HaplotypeScore=14.1219;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.346;QD=23.84;ReadPosRankSum=2.412;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,257:263:99:6269,640,0 chrV 506405 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=3.628;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.565;QD=23.93;ReadPosRankSum=1.690;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4020,418,0 chrV 506534 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=169;Dels=0.00;FS=6.973;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.763;QD=23.72;ReadPosRankSum=2.406;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4009,429,0 chrV 506573 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=177;Dels=0.00;FS=5.503;HaplotypeScore=19.7090;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.347;QD=22.71;ReadPosRankSum=2.925;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:3,171:177:99:4020,429,0 chrV 506669 . A G 3593.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.18;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3593,367,0 chrV 506670 . C T 3465.01 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.52;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3465,360,0 chrV 506678 . C T 3401.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.01;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3401,363,0 chrV 507153 . C A 3129 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.19;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3162,319,0 chrV 507407 . C A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.96;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3330,354,0 chrV 507644 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7147;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.06;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4065,412,0 chrV 507906 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.4171;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.37;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3948,400,0 chrV 508179 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.995;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.584;QD=24.52;ReadPosRankSum=2.374;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3997,423,0 chrV 508274 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=139;Dels=0.00;FS=10.853;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.920;QD=24.06;ReadPosRankSum=2.950;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3345,354,0 chrV 508304 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=142;Dels=0.00;FS=6.018;HaplotypeScore=14.1754;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.748;QD=21.06;ReadPosRankSum=2.921;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3023,324,0 chrV 508632 . C G 2598 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2631,273,0 chrV 508911 . A G 3064 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.11;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3097,327,0 chrV 509188 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.25;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2684,273,0 chrV 509583 . A G 5214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.5369;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.083;QD=23.07;ReadPosRankSum=1.717;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5214,544,0 chrV 509654 . G A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3816;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.84;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4677,475,0 chrV 509938 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3276,348,0 chrV 510191 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1679,177,0 chrV 511800 . T C 5173.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.39;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5173,567,0 chrV 511824 . C T 4963.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.2038;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.77;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4963,511,0 chrV 513424 . A T 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=7.644;HaplotypeScore=11.3950;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.024;QD=21.81;ReadPosRankSum=2.402;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3403,357,0 chrV 514323 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.48;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3203,322,0 chrV 514855 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.61;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3445,355,0 chrV 514906 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4041,412,0 chrV 515086 . T G 2910 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2430;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.56;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2943,312,0 chrV 515785 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3599,381,0 chrV 515797 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.31;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3566,378,0 chrV 515827 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.55;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2919,306,0 chrV 515950 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7949;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.92;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3938,414,0 chrV 516091 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=5.441;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.231;QD=24.61;ReadPosRankSum=1.684;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5341,568,0 chrV 516235 . A T 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.572;QD=23.61;ReadPosRankSum=1.619;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5124,520,0 chrV 516328 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=22.9203;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.04;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3939,414,0 chrV 516427 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.02;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4354,465,0 chrV 516916 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.2392;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.05;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4749,516,0 chrV 516964 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=236;Dels=0.00;FS=5.295;HaplotypeScore=18.7579;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.272;QD=23.69;ReadPosRankSum=2.953;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:5592,583,0 chrV 517529 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=19.14;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1717,183,0 chrV 517605 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.43;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2037,216,0 chrV 518374 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.58;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3375,357,0 chrV 518390 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=178;Dels=0.00;FS=8.095;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.492;QD=22.24;ReadPosRankSum=2.408;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3958,423,0 chrV 518464 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8119;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.72;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4103,412,0 chrV 518749 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3863,391,0 chrV 518973 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.099;QD=24.26;ReadPosRankSum=1.660;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4706,490,0 chrV 519649 . C T 5209.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.18;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5209,550,0 chrV 519704 . C A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.59;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4376,436,0 chrV 519742 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4182,444,0 chrV 520026 . T C 6377.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.82;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6377,667,0 chrV 520271 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.98;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4044,429,0 chrV 520333 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=3.511;HaplotypeScore=11.9534;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.696;QD=23.59;ReadPosRankSum=1.696;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4552,481,0 chrV 520666 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.19;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2141,216,0 chrV 520669 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.25;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2102,213,0 chrV 520790 . A G 61.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.465;DP=60;Dels=0.00;FS=7.449;HaplotypeScore=233.5393;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-2.269;QD=1.03;ReadPosRankSum=-4.306;SB=2.49 GT:AD:DP:GQ:PL 1/1:51,8:60:12:94,12,0 chrV 520795 . A G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=0.25;SB=-4.038e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:44,6,0 chrV 520891 . A T 652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=5.911;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=-0.666;QD=16.72;ReadPosRankSum=1.555;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:69:685,69,0 chrV 520915 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=15.51;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:762,78,0 chrV 521007 . T A 2062 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=25.15;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2095,213,0 chrV 521119 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=26.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2048,204,0 chrV 521308 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2320,246,0 chrV 521398 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=83;Dels=0.00;FS=4.260;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.602;QD=24.48;ReadPosRankSum=1.689;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,79:83:99:2065,219,0 chrV 521557 . T A 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.902;QD=23.59;ReadPosRankSum=1.660;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2298,246,0 chrV 522010 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.91;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4119,418,0 chrV 522133 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=168;Dels=0.00;FS=9.155;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.035;QD=22.83;ReadPosRankSum=3.345;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3835,402,0 chrV 522683 . C A 2641 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=20.80;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2674,285,0 chrV 522685 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=7.272;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.154;QD=19.63;ReadPosRankSum=2.375;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2605,285,0 chrV 522702 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=4.5211;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=15.29;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2280,267,0 chrV 522704 . A T 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6010;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=0.421;QD=15.27;ReadPosRankSum=2.285;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2308,270,0 chrV 522739 . A C 2789 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.88;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2822,300,0 chrV 522841 . C G 1672 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.59;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1705,180,0 chrV 522899 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=18.71;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1792,201,0 chrV 522900 . C A 1714 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=18.23;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1747,198,0 chrV 523179 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.538;QD=25.09;ReadPosRankSum=1.693;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2266,237,0 chrV 523260 . C A 2723 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.69;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2756,282,0 chrV 523488 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.09;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3462,366,0 chrV 523683 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=127;Dels=0.00;FS=6.413;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.620;QD=24.72;ReadPosRankSum=2.410;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:3172,330,0 chrV 523812 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1137;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.73;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2951,312,0 chrV 523845 . C G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.87;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3492,369,0 chrV 524124 . A C 2852 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.77;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2885,306,0 chrV 524247 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9229;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.65;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3335,343,0 chrV 524394 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.70;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3764,379,0 chrV 524520 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.8014;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.30;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3682,396,0 chrV 524779 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.6118;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.25;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3783,397,0 chrV 525075 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3841,411,0 chrV 525282 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.500;QD=22.48;ReadPosRankSum=1.714;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4384,460,0 chrV 525390 . T G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.156;DP=174;Dels=0.00;FS=4.936;HaplotypeScore=10.3785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.116;QD=19.04;ReadPosRankSum=2.247;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3313,354,0 chrV 525755 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.226;QD=22.75;ReadPosRankSum=1.656;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3150,330,0 chrV 525802 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.67;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2889,300,0 chrV 526092 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.91;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3388,363,0 chrV 526682 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7883;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.58;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2368,252,0 chrV 526712 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7866;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.83;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2130,216,0 chrV 526906 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.42;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1042,114,0 chrV 527192 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2844;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.172;QD=26.73;ReadPosRankSum=1.701;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:3027,312,0 chrV 527435 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.35;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3549,361,0 chrV 527504 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2393,249,0 chrV 527771 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=26.09;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3242,337,0 chrV 528995 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4411,448,0 chrV 529484 . G T 2069 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0553;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.06;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2102,213,0 chrV 529707 . T G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.41;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3532,378,0 chrV 530174 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=6.016;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.920;QD=24.77;ReadPosRankSum=2.949;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3418,360,0 chrV 530348 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.32;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3728,376,0 chrV 530349 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.40;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3552,375,0 chrV 530754 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=25.20;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3453,349,0 chrV 530762 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.28;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3351,340,0 chrV 531061 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.9518;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.07;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3731,373,0 chrV 531187 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.28;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4260,453,0 chrV 531723 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.40;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2852,288,0 chrV 532002 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.40;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2375,240,0 chrV 532191 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.20;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3057,310,0 chrV 532205 . T A 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.171;QD=22.67;ReadPosRankSum=2.332;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2867,297,0 chrV 532386 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.51;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4107,415,0 chrV 532674 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4286,433,0 chrV 532728 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3997,421,0 chrV 532772 . A T 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.551;QD=23.93;ReadPosRankSum=1.709;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3662,384,0 chrV 533214 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.34;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3676,390,0 chrV 533244 . C A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.32;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3696,373,0 chrV 533265 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.23;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3785,379,0 chrV 533502 . T G 5100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=203;Dels=0.00;FS=5.748;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.807;QD=25.12;ReadPosRankSum=2.946;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:5100,532,0 chrV 534290 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=128;Dels=0.00;FS=6.008;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.457;QD=23.93;ReadPosRankSum=2.914;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3096,327,0 chrV 534723 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3075,315,0 chrV 534777 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.6237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.900;QD=23.83;ReadPosRankSum=1.678;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3107,327,0 chrV 535092 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.347;QD=23.37;ReadPosRankSum=1.689;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1926,201,0 chrV 535431 . T A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.7932;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.56;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3954,403,0 chrV 535583 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=155;Dels=0.00;FS=8.275;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.778;QD=23.26;ReadPosRankSum=3.323;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:4,150:155:99:3606,378,0 chrV 535647 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.52;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3803,379,0 chrV 535681 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.30;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3516,358,0 chrV 535805 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2675,268,0 chrV 536075 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.43;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2720,273,0 chrV 537193 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3913,394,0 chrV 537259 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.048;QD=23.94;ReadPosRankSum=1.708;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3447,360,0 chrV 537415 . G T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4394,460,0 chrV 537539 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.75;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3347,337,0 chrV 537745 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=127;Dels=0.00;FS=7.245;HaplotypeScore=8.4685;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.825;QD=24.24;ReadPosRankSum=2.411;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3111,330,0 chrV 537801 . A C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.905;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.627;QD=24.99;ReadPosRankSum=1.697;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2507,264,0 chrV 537978 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.639;HaplotypeScore=13.6231;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.070;QD=25.60;ReadPosRankSum=-0.603;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4582,466,0 chrV 538329 . A T 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.365;QD=21.34;ReadPosRankSum=1.641;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:90:844,90,0 chrV 538361 . A T 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.552;QD=14.63;ReadPosRankSum=1.552;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:33:311,33,0 chrV 538371 . A T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.380;QD=4.63;ReadPosRankSum=1.380;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,4:6:6:59,6,0 chrV 538885 . G C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.40;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3652,379,0 chrV 538899 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.55;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3750,396,0 chrV 538956 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.08;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2921,297,0 chrV 538976 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8946;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.70;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2995,309,0 chrV 539053 . G C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.79;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3378,349,0 chrV 539207 . A T 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.283;QD=23.92;ReadPosRankSum=1.700;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2616,276,0 chrV 539462 . T G 3103 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:3136,336,0 chrV 539540 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.20;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3384,337,0 chrV 539935 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.898;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.063;QD=22.56;ReadPosRankSum=2.378;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3146,339,0 chrV 540004 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=166;Dels=0.00;FS=7.117;HaplotypeScore=12.3315;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.261;QD=24.37;ReadPosRankSum=2.390;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:4045,429,0 chrV 540205 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.690;QD=24.72;ReadPosRankSum=1.706;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3288,345,0 chrV 540352 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.918;QD=22.59;ReadPosRankSum=2.383;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2541,267,0 chrV 540409 . C A 3187 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.91;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3220,330,0 chrV 540722 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.334;QD=22.92;ReadPosRankSum=1.637;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2531,261,0 chrV 540957 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=26.68;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3522,352,0 chrV 541039 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.63;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2890,292,0 chrV 541074 . C G 2576 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7605;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.30;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2609,276,0 chrV 541157 . G C 2809 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2842,300,0 chrV 541279 . C A 2585 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=26.11;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2618,267,0 chrV 541352 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=24.34;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2175,222,0 chrV 541421 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=25.88;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2776,294,0 chrV 541474 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=1.524;QD=20.23;ReadPosRankSum=1.697;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2056,216,0 chrV 541487 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=20.72;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2001,201,0 chrV 541518 . T C 440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;MQRankSum=-1.014;QD=3.96;ReadPosRankSum=1.701;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:60:473,60,0 chrV 541537 . A G 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;MQRankSum=-1.636;QD=13.05;ReadPosRankSum=1.636;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:1939,210,0 chrV 541538 . T A 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=3.4849;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;MQRankSum=-1.708;QD=13.58;ReadPosRankSum=1.708;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2029,216,0 chrV 541549 . T A 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=2.664;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-1.938;QD=14.58;ReadPosRankSum=2.420;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2483,252,0 chrV 541579 . T G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=2.636;HaplotypeScore=7.4896;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=-1.972;QD=16.91;ReadPosRankSum=2.410;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3161,342,0 chrV 541650 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=25.49;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3543,384,0 chrV 541859 . G C 3681.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.86;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3681,399,0 chrV 541873 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.91;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4089,412,0 chrV 541972 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.66;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2740,279,0 chrV 541980 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.60;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2970,300,0 chrV 542049 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.480;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.688;QD=25.04;ReadPosRankSum=1.688;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3907,397,0 chrV 545025 . G T 1579 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.63;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1612,159,0 chrV 547317 . T C 5741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=240;Dels=0.00;FS=8.227;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.679;QD=23.92;ReadPosRankSum=2.429;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5741,601,0 chrV 547434 . G A 5108.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=24.3954;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.54;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5108,514,0 chrV 547620 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.164;QD=25.19;ReadPosRankSum=1.675;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4685,496,0 chrV 548061 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.52;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3692,390,0 chrV 548133 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.94;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2877,294,0 chrV 548298 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=8.624;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.684;QD=22.98;ReadPosRankSum=2.400;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2308,237,0 chrV 548318 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.17;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1949,195,0 chrV 548325 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.23;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1894,195,0 chrV 548345 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.02;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1835,192,0 chrV 548501 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=25.71;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2424,258,0 chrV 548562 . A T 1998 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.07;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2031,216,0 chrV 548672 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.21;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2418,246,0 chrV 548869 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3504,363,0 chrV 549055 . A G 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.080;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.559;QD=25.25;ReadPosRankSum=1.714;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4823,516,0 chrV 549124 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.851;QD=25.25;ReadPosRankSum=1.671;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4318,460,0 chrV 549289 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4491,480,0 chrV 549370 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0830;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.643;QD=22.54;ReadPosRankSum=1.710;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3538,375,0 chrV 549585 . C T 920 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.17;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:953,96,0 chrV 549631 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.928;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.238;QD=22.60;ReadPosRankSum=1.650;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:982,105,0 chrV 549645 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=53;Dels=0.00;FS=2.612;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.471;QD=21.34;ReadPosRankSum=2.865;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:3,49:53:99:1164,123,0 chrV 549677 . A T 1437 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.18;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1470,147,0 chrV 549690 . A C 1365 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.33;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1398,147,0 chrV 549802 . A T 1601 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.25;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1634,165,0 chrV 549929 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=27.35;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3260,328,0 chrV 550011 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.66;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2419,246,0 chrV 550177 . G T 2577 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.51;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2610,276,0 chrV 550210 . A G 2220 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.42;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2253,234,0 chrV 550227 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=23.01;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2058,204,0 chrV 550261 . G T 1857 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.18;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1890,201,0 chrV 550284 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-1.628;QD=18.77;ReadPosRankSum=1.697;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1910,201,0 chrV 550287 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=17.63;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1831,183,0 chrV 550341 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.227;QD=20.70;ReadPosRankSum=1.696;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2041,210,0 chrV 550381 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.727;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.301;QD=26.83;ReadPosRankSum=1.694;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2528,261,0 chrV 550566 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.21;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2599,258,0 chrV 550744 . G C 1967 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.90;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2000,213,0 chrV 550785 . T A 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.377;QD=24.87;ReadPosRankSum=1.694;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2321,237,0 chrV 550834 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.69;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2700,270,0 chrV 551369 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.01;FS=6.973;HaplotypeScore=25.0570;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.109;QD=21.82;ReadPosRankSum=2.362;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3710,396,0 chrV 551411 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.590;QD=21.23;ReadPosRankSum=1.693;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3736,396,0 chrV 551439 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=19.17;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3757,402,0 chrV 551444 . A C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.836;QD=19.16;ReadPosRankSum=1.715;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:3870,414,0 chrV 551815 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=125;Dels=0.00;FS=3.027;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.160;QD=23.84;ReadPosRankSum=2.410;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3013,318,0 chrV 551830 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.30;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3216,336,0 chrV 552374 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.37;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3177,336,0 chrV 552479 . C A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.42;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3329,334,0 chrV 552597 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.87;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3771,382,0 chrV 552602 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3392,357,0 chrV 552684 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=207;Dels=0.00;FS=9.158;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.564;QD=23.67;ReadPosRankSum=3.401;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:4900,511,0 chrV 553016 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=27.31;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4370,439,0 chrV 553226 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=22.28;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1615,174,0 chrV 553237 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=22.97;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1480,150,0 chrV 553261 . T C 792 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=21.41;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:84:825,84,0 chrV 553262 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.9369;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=20.14;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:84:778,84,0 chrV 553466 . A G 2969 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.99;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3002,315,0 chrV 553660 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=174;Dels=0.00;FS=6.961;HaplotypeScore=13.6641;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.510;QD=22.16;ReadPosRankSum=2.421;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,169:174:99:3855,414,0 chrV 553849 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=3.680;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.665;QD=25.02;ReadPosRankSum=-0.022;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3853,368,0 chrV 553933 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.91;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2574,267,0 chrV 554060 . G T 1685 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.06;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1718,183,0 chrV 554139 . G T 1252 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;QD=22.76;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1285,138,0 chrV 554157 . C T 901 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=21.45;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:934,99,0 chrV 554160 . G A 809 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=19.73;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:842,93,0 chrV 554162 . A G 777 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=0.044;QD=19.92;ReadPosRankSum=1.644;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:90:810,90,0 chrV 554170 . G A 598 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.59;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:631,66,0 chrV 554189 . A G 557 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=15.91;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:590,63,0 chrV 554200 . C T 549 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=17.16;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:582,60,0 chrV 554219 . T C 535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=3.854;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=0.917;QD=15.74;ReadPosRankSum=1.529;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:60:568,60,0 chrV 554237 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=18.80;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:691,72,0 chrV 554292 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=17.67;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:987,102,0 chrV 554301 . T C 821 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=37.6605;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=16.76;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:93:854,93,0 chrV 554319 . A G 681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=7.286;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=1.691;QD=8.73;ReadPosRankSum=2.387;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:78:714,78,0 chrV 554324 . A G 653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.007;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=0.266;QD=8.37;ReadPosRankSum=1.688;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:75:686,75,0 chrV 554330 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=7.37;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:69:637,69,0 chrV 554406 . T G 568 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;MQRankSum=1.576;QD=5.12;ReadPosRankSum=1.701;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:63:601,63,0 chrV 554409 . G A 615 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=5.69;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:66:648,66,0 chrV 554414 . C T 604 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=5.75;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:66:637,66,0 chrV 554416 . A G 592 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=5.64;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:66:625,66,0 chrV 554422 . C A 637 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=5.49;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:66:670,66,0 chrV 554437 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=8.10;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1029,105,0 chrV 554500 . C A 2744 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=20.33;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2777,303,0 chrV 554536 . A T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1046;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=25.84;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4161,424,0 chrV 554683 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=24.77;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3839,394,0 chrV 554720 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.80;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3618,367,0 chrV 554734 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.95;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3489,366,0 chrV 554819 . A T 2974 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.6992;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.838;QD=23.98;ReadPosRankSum=1.676;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3007,303,0 chrV 554822 . A C 2681 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5467;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.34;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2714,279,0 chrV 554823 . T C 2669 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5467;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.43;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2702,276,0 chrV 554883 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.460;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.028;QD=21.48;ReadPosRankSum=1.704;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2675,285,0 chrV 554931 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=22.50;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2688,285,0 chrV 554949 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.99;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2470,252,0 chrV 554977 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=99;Dels=0.00;FS=3.051;HaplotypeScore=5.8412;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.062;QD=22.30;ReadPosRankSum=2.102;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2241,237,0 chrV 555084 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.73;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3071,304,0 chrV 555089 . A T 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=8.180;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.463;QD=22.17;ReadPosRankSum=2.355;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2915,295,0 chrV 555117 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.87;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2986,304,0 chrV 555177 . T A 2559 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.37;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2592,279,0 chrV 555234 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.20;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2377,237,0 chrV 555415 . A T 1052 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.04;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1085,108,0 chrV 555535 . T C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.543;QD=22.85;ReadPosRankSum=1.681;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1564,165,0 chrV 555788 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.39;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2700,285,0 chrV 555914 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=2.917;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.719;QD=26.00;ReadPosRankSum=2.340;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3536,364,0 chrV 555951 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.40;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4197,430,0 chrV 556026 . G A 4571.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.71;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4571,489,0 chrV 556205 . A C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3712,376,0 chrV 556281 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3711,379,0 chrV 556443 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2502,249,0 chrV 556662 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6235;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.82;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4095,421,0 chrV 556734 . C T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4390;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.25;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4545,460,0 chrV 556791 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.73;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4501,475,0 chrV 556815 . A G 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.956;QD=24.47;ReadPosRankSum=1.696;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4699,493,0 chrV 557030 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.32;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2622,264,0 chrV 557037 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.371;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.027;QD=23.09;ReadPosRankSum=1.701;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2642,270,0 chrV 557054 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.21;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2748,279,0 chrV 557076 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=129;Dels=0.00;FS=9.555;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.016;QD=21.71;ReadPosRankSum=2.945;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2833,300,0 chrV 557148 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=2.956;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.693;QD=24.00;ReadPosRankSum=2.408;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2841,303,0 chrV 557265 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.85;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2569,258,0 chrV 557490 . T A 4720.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.58;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4720,472,0 chrV 557616 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1890;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.11;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3968,426,0 chrV 557877 . T C 4861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.209;QD=25.32;ReadPosRankSum=1.678;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4861,499,0 chrV 558228 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.91;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3513,367,0 chrV 558324 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=25.64;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4153,421,0 chrV 558366 . T A 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=6.454;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.514;QD=23.13;ReadPosRankSum=2.119;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3133,330,0 chrV 558368 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.61;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3079,321,0 chrV 558441 . T A 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.572;HaplotypeScore=14.1077;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.350;QD=25.10;ReadPosRankSum=1.692;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4343,436,0 chrV 558514 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.9551;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.40;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2743,282,0 chrV 558633 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=26.30;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3366,337,0 chrV 558993 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.08;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4565,454,0 chrV 559099 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.9460;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.88;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4966,531,0 chrV 559138 . T C 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=249;Dels=0.00;FS=7.325;HaplotypeScore=20.0781;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-2.044;QD=21.62;ReadPosRankSum=2.420;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5384,577,0 chrV 559376 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.76;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4210,447,0 chrV 559384 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.09;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3998,409,0 chrV 559405 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.11;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3377,357,0 chrV 559558 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3524;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.95;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4192,424,0 chrV 559696 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.148;QD=23.38;ReadPosRankSum=1.707;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3273,348,0 chrV 559831 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6407;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=21.46;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3369,360,0 chrV 559837 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=22.41;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3519,357,0 chrV 559859 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=5.637;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-1.265;QD=20.13;ReadPosRankSum=2.955;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3173,339,0 chrV 559862 . T C 3085 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.65;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3118,327,0 chrV 560011 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.95;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3328,348,0 chrV 560026 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=22.95;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3443,360,0 chrV 560290 . A C 2713 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.88;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2746,294,0 chrV 560376 . T C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=3.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.162;QD=25.05;ReadPosRankSum=2.400;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2513,258,0 chrV 560680 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.690;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-1.657;QD=21.17;ReadPosRankSum=1.707;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2997,315,0 chrV 560686 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=20.55;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2745,288,0 chrV 560715 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=132;Dels=0.00;FS=2.082;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-1.492;QD=11.82;ReadPosRankSum=3.391;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:4,127:132:99:1593,203,0 chrV 560716 . G A 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=138;Dels=0.01;FS=6.114;HaplotypeScore=9.3281;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-1.326;QD=11.38;ReadPosRankSum=2.872;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,130:137:99:1604,203,0 chrV 560810 . A C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=7.339;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.035;QD=24.94;ReadPosRankSum=2.361;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3467,375,0 chrV 560836 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.14;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3099,316,0 chrV 561097 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=24.65;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2572,261,0 chrV 561145 . C T 1207 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=18.57;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1240,126,0 chrV 561154 . G A 1193 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=18.08;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1226,126,0 chrV 561160 . C T 969 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5082;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=13.84;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1002,114,0 chrV 561163 . A G 1034 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;MQRankSum=1.273;QD=15.67;ReadPosRankSum=2.374;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:99:1067,111,0 chrV 561166 . G A 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7196;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=15.69;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1084,111,0 chrV 561193 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=14.28;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1275,138,0 chrV 561211 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;QD=15.06;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1479,153,0 chrV 561220 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=0.995;QD=14.24;ReadPosRankSum=1.695;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1372,144,0 chrV 561227 . T C 1186 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=12.62;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1219,132,0 chrV 561263 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-1.537;QD=0.35;ReadPosRankSum=-1.293;SB=-8.418e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:6:56,6,0 chrV 561269 . G A 843 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=12.22;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:876,90,0 chrV 561292 . C G 469 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=12.34;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:502,54,0 chrV 561299 . C T 341 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=10.66;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:39:374,39,0 chrV 561309 . T C 242 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=9.31;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:275,30,0 chrV 561353 . C T 369 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=17.57;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:402,54,0 chrV 561355 . C T 341 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=16.24;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:374,51,0 chrV 561364 . T A 504 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;QD=18.00;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:537,69,0 chrV 561373 . T C 497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=33;Dels=0.00;FS=3.590;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;MQRankSum=-1.516;QD=15.06;ReadPosRankSum=1.625;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,31:33:69:530,69,0 chrV 561379 . C T 708 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=16.86;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:741,93,0 chrV 561430 . A T 1039 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=21.20;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1072,111,0 chrV 561461 . A G 818 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=21.53;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:851,90,0 chrV 561500 . A G 103.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=8.3429;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-0.579;QD=8.59;ReadPosRankSum=1.448;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:18:136,18,0 chrV 561510 . A G 54.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.271;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;MQRankSum=-1.733;QD=5.45;ReadPosRankSum=1.733;SB=-4.826e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:12:87,12,0 chrV 561524 . T A 119.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=13.23;SB=-3.304e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:152,21,0 chrV 561529 . C T 119.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=13.23;SB=-3.204e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:152,21,0 chrV 561538 . A G 119.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:152,21,0 chrV 561541 . C G 148.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=16.45;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:181,24,0 chrV 561545 . T C 149.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=14.90;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:182,24,0 chrV 561555 . A C 237 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=19.75;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:270,33,0 chrV 561569 . C T 308 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=20.53;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:341,39,0 chrV 561578 . C T 342 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=18.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:375,42,0 chrV 561590 . G A 475 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=23.75;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:54:508,54,0 chrV 561678 . G A 596 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=19.23;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:629,69,0 chrV 561690 . G A 466 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=15.53;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:60:499,60,0 chrV 561692 . T A 421 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=14.52;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:454,57,0 chrV 561717 . C T 430 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=11.94;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:54:463,54,0 chrV 561736 . G A 304 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=8.44;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:36:337,36,0 chrV 561746 . G A 408 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=9.49;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:45:441,45,0 chrV 561766 . A G 480 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=8.14;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:54:513,54,0 chrV 561802 . C A 762 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=10.44;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:81:795,81,0 chrV 561809 . T C 767 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=9.59;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:87:800,87,0 chrV 561858 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=16.32;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1306,144,0 chrV 561877 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=18.54;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1590,165,0 chrV 561906 . C A 1656 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=19.71;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1689,174,0 chrV 561915 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=18.47;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1806,195,0 chrV 562072 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=2.920;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.128;QD=24.63;ReadPosRankSum=2.330;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3546,369,0 chrV 562097 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.350;QD=21.34;ReadPosRankSum=2.417;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3256,342,0 chrV 562113 . C A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.38;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3782,385,0 chrV 562155 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.86;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3211,325,0 chrV 562173 . T G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=152;Dels=0.00;FS=5.615;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.742;QD=20.59;ReadPosRankSum=2.954;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3162,330,0 chrV 562264 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.021;QD=23.95;ReadPosRankSum=1.711;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3951,417,0 chrV 562315 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=23.14;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3911,414,0 chrV 562359 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.5426;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.20;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3841,394,0 chrV 562436 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.13;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3269,331,0 chrV 562473 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=7.226;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.529;QD=19.24;ReadPosRankSum=2.417;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:2977,303,0 chrV 562518 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.81;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3882,414,0 chrV 562559 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.7527;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.87;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4446,448,0 chrV 562570 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=202;Dels=0.00;FS=7.104;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.556;QD=20.65;ReadPosRankSum=2.352;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4171,427,0 chrV 562582 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.06;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3911,409,0 chrV 562610 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.86;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3794,399,0 chrV 562667 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.5036;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=24.15;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4058,406,0 chrV 562683 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.23;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4361,442,0 chrV 562846 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.986;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=0.615;QD=23.53;ReadPosRankSum=2.380;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3365,363,0 chrV 562873 . T A 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-0.027;QD=22.79;ReadPosRankSum=1.678;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2996,303,0 chrV 562888 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=22.52;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2938,318,0 chrV 562916 . G C 2708 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.57;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2741,291,0 chrV 563000 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=25.37;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2900,297,0 chrV 563005 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=2.974;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=-0.781;QD=23.85;ReadPosRankSum=2.407;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2776,297,0 chrV 563017 . A C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=2.941;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=-1.116;QD=22.91;ReadPosRankSum=2.404;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2507,264,0 chrV 563018 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=22.84;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2477,261,0 chrV 563066 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=22.16;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2094,228,0 chrV 563074 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=22.91;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2232,237,0 chrV 563104 . A G 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=0.706;QD=22.90;ReadPosRankSum=1.700;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2529,273,0 chrV 563174 . A G 3116 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=25.54;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3149,330,0 chrV 563249 . T G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=85;Dels=0.00;FS=2.595;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;MQRankSum=-0.695;QD=22.18;ReadPosRankSum=2.867;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:3,80:85:99:1918,204,0 chrV 563275 . A C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=7.132;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-1.453;QD=20.48;ReadPosRankSum=1.676;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1344,144,0 chrV 563299 . T A 924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=10.27;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:957,99,0 chrV 563318 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=8.57;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:710,75,0 chrV 563320 . A G 692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;MQRankSum=0.174;QD=8.76;ReadPosRankSum=2.355;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:78:725,78,0 chrV 563347 . A G 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;MQRankSum=-1.175;QD=14.25;ReadPosRankSum=1.692;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1273,138,0 chrV 563414 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=21.43;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2047,207,0 chrV 563421 . T A 1889 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=79.2537;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=20.53;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1922,204,0 chrV 563452 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=18.20;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1707,183,0 chrV 563474 . T G 1492 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=17.35;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1525,165,0 chrV 563507 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=17.11;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1248,135,0 chrV 563513 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=19.94;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1329,150,0 chrV 563545 . G T 1582 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.09;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1615,171,0 chrV 563565 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=20.46;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1649,174,0 chrV 563580 . G T 1613 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=17.34;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1646,180,0 chrV 563607 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=19.61;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1935,210,0 chrV 563620 . T A 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=102;Dels=0.00;FS=2.732;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-1.340;QD=18.60;ReadPosRankSum=2.401;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1930,195,0 chrV 563665 . A T 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.523;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=1.562;QD=23.39;ReadPosRankSum=1.698;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2419,246,0 chrV 563747 . C A 2395 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=8.1271;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=23.95;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2428,246,0 chrV 563781 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=24.39;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2887,292,0 chrV 563807 . A G 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.372;QD=22.56;ReadPosRankSum=1.700;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2492,264,0 chrV 563882 . T A 2025 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=8.2226;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=23.28;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2058,213,0 chrV 563956 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=24.74;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2730,285,0 chrV 563964 . C G 2695 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=24.50;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2728,291,0 chrV 564006 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=24.61;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2642,270,0 chrV 564048 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=23.66;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2257,252,0 chrV 564065 . A G 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;MQRankSum=-0.285;QD=19.78;ReadPosRankSum=1.688;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1596,186,0 chrV 564074 . T A 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=19.68;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1548,177,0 chrV 564097 . T C 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=7.033;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=1.244;QD=21.11;ReadPosRankSum=2.193;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2060,225,0 chrV 564135 . C A 2110 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=21.53;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2143,225,0 chrV 564147 . C T 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;MQRankSum=1.452;QD=21.25;ReadPosRankSum=1.592;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2137,225,0 chrV 564195 . C A 1385 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=17.53;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1418,165,0 chrV 564197 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=17.14;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1370,162,0 chrV 564206 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=12.97;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:928,111,0 chrV 564212 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=14.12;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1007,120,0 chrV 564252 . C T 1227 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=18.59;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1260,152,0 chrV 564265 . T C 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=6.163;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=0.000;QD=17.68;ReadPosRankSum=1.676;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1147,143,0 chrV 564272 . A T 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=18.72;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1119,135,0 chrV 564300 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=16.82;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1042,126,0 chrV 564304 . C A 1034 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=17.83;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1067,126,0 chrV 564343 . A T 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-1.687;QD=10.22;ReadPosRankSum=1.687;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:93:820,93,0 chrV 564355 . T C 713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.719;DP=81;Dels=0.00;FS=7.684;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;MQRankSum=0.206;QD=8.80;ReadPosRankSum=3.719;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:87:746,87,0 chrV 564360 . T C 855 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=10.43;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:888,102,0 chrV 564372 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=10.63;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:990,111,0 chrV 564381 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=10.54;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:929,105,0 chrV 564395 . T G 621 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.51;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:654,84,0 chrV 564396 . G A 627 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.59;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:660,84,0 chrV 564397 . C T 622 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.52;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:655,84,0 chrV 564403 . A G 763 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=12.929;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=-1.185;QD=9.78;ReadPosRankSum=2.387;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:87:796,87,0 chrV 564406 . T G 728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=-1.244;QD=9.33;ReadPosRankSum=1.688;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:87:761,87,0 chrV 564431 . G A 718 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=12.60;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:751,81,0 chrV 564461 . G A 301 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=9.12;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:334,39,0 chrV 564462 . T A 310 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=9.39;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:343,39,0 chrV 564472 . T G 288 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=8.47;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:39:321,39,0 chrV 564485 . T C 486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;MQRankSum=0.408;QD=14.29;ReadPosRankSum=1.631;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:57:519,57,0 chrV 564486 . G C 484 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;QD=13.83;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:57:517,57,0 chrV 564535 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=22.12;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1493,162,0 chrV 564567 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;QD=22.62;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2001,210,0 chrV 564590 . T C 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=1.107;QD=22.14;ReadPosRankSum=1.588;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1649,177,0 chrV 564680 . T C 623 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=19.47;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:69:656,69,0 chrV 564701 . A C 358 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.37;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:391,42,0 chrV 564705 . T C 366 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.87;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:399,42,0 chrV 564717 . G A 382 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.87;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:415,42,0 chrV 564723 . C A 383 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.94;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:416,42,0 chrV 564730 . A G 325 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.67;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:358,39,0 chrV 564732 . T C 321 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.40;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:354,36,0 chrV 564809 . C T 654 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=24.22;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:687,72,0 chrV 564814 . T C 648 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=21.60;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:681,75,0 chrV 564841 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=21.83;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:928,93,0 chrV 564865 . A G 539 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=14.57;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:60:572,60,0 chrV 564880 . A C 388 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=12.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:45:421,45,0 chrV 564894 . A G 323 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=9.50;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:39:356,39,0 chrV 564898 . T C 284 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=8.35;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:36:317,36,0 chrV 564904 . A G 286 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=7.94;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:36:319,36,0 chrV 564935 . A C 136.06 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=0;QD=4.39;SB=-8.907e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:21:169,21,0 chrV 564937 . T C 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=0;QD=4.36;SB=-8.707e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:21:168,21,0 chrV 564938 . T C 134.06 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=0;QD=4.32;SB=-8.507e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:21:167,21,0 chrV 564945 . C T 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;QD=5.38;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:232,27,0 chrV 564949 . A C 185.01 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=4.87;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:27:218,27,0 chrV 564968 . T C 475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;MQRankSum=-1.393;QD=9.31;ReadPosRankSum=1.664;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:57:508,57,0 chrV 565013 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.19;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1850,195,0 chrV 565036 . G C 2641 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;QD=24.23;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2674,282,0 chrV 565093 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=23.01;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2702,306,0 chrV 565120 . T A 1735 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-0.882;QD=19.72;ReadPosRankSum=2.226;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1768,218,0 chrV 565122 . T G 1700 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;MQRankSum=-0.836;QD=19.54;ReadPosRankSum=2.393;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1733,206,0 chrV 565125 . A G 1756 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=19.95;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1789,207,0 chrV 565208 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=25.68;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3467,372,0 chrV 565243 . G T 2801 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=23.74;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2834,300,0 chrV 565254 . T A 2332 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=22.21;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2365,252,0 chrV 565289 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=78.4666;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;QD=18.36;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1759,201,0 chrV 565315 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=17.27;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1812,195,0 chrV 565361 . A G 1696 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.01;FS=2.581;HaplotypeScore=36.4581;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;MQRankSum=-1.597;QD=14.02;ReadPosRankSum=2.942;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:1729,186,0 chrV 565365 . T C 1588 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.449;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=-0.725;QD=13.57;ReadPosRankSum=1.703;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1621,174,0 chrV 565371 . A G 1538 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=14.11;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1571,171,0 chrV 565372 . A C 1525 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=-0.747;QD=13.99;ReadPosRankSum=0.397;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1558,171,0 chrV 565382 . A C 1582 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=15.21;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1615,174,0 chrV 565388 . C G 1486 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=14.86;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1519,162,0 chrV 565436 . C G 969 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=18.63;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1002,111,0 chrV 565441 . G C 945 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=18.53;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:978,108,0 chrV 565475 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=19.37;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:866,96,0 chrV 565488 . T C 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-0.377;QD=18.52;ReadPosRankSum=1.657;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:885,105,0 chrV 565507 . C T 860 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=0;QD=17.92;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:893,108,0 chrV 565512 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=0;MQRankSum=0.530;QD=20.04;ReadPosRankSum=1.591;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1035,117,0 chrV 565539 . A C 1738 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=24.48;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1771,195,0 chrV 565639 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=26.65;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2671,276,0 chrV 565651 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=25.73;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2297,243,0 chrV 565675 . G T 1705 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=26.23;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1738,177,0 chrV 565711 . G A 411 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=20.55;SB=-8.700e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:444,48,0 chrV 565722 . A T 502 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=21.83;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:535,54,0 chrV 565729 . T C 505 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=20.20;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:538,57,0 chrV 565731 . A G 538 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=21.52;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:571,60,0 chrV 565737 . A T 620 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.37;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:66:653,66,0 chrV 565740 . T A 600 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.35;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:633,66,0 chrV 565742 . G A 614 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.81;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:647,66,0 chrV 565746 . T A 636 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:669,66,0 chrV 565749 . A C 612 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.74;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:645,66,0 chrV 565750 . G T 644 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.77;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:677,66,0 chrV 565761 . C T 782 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=15.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:81:815,81,0 chrV 565764 . C T 807 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=15.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:84:840,84,0 chrV 565775 . C T 615 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.98;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:66:648,66,0 chrV 565777 . G A 609 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.87;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:66:642,66,0 chrV 565780 . C T 666 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=11.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:69:699,69,0 chrV 565783 . G A 645 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=11.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:69:678,69,0 chrV 565785 . A G 618 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=11.04;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:69:651,69,0 chrV 565788 . G C 640 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=10.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:69:673,69,0 chrV 565791 . A T 641 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=9.86;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:69:674,69,0 chrV 565794 . T C 632 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=18.451;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=1.485;QD=9.03;ReadPosRankSum=1.683;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,69:70:72:665,72,0 chrV 565800 . A G 642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;MQRankSum=1.039;QD=8.56;ReadPosRankSum=1.686;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,74:75:72:675,72,0 chrV 565808 . C G 649 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=9.01;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:75:682,75,0 chrV 565834 . T G 552 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=9.52;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:63:585,63,0 chrV 565880 . C T 375 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=15.62;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:45:408,45,0 chrV 565885 . A C 335 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=17.63;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:368,42,0 chrV 565891 . T A 243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=18.69;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:276,30,0 chrV 565893 . C T 243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=18.69;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:276,30,0 chrV 565894 . A G 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=18.00;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:267,30,0 chrV 565901 . G A 78.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:111,15,0 chrV 565902 . A G 78.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:111,15,0 chrV 565903 . A G 103.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=17.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:136,18,0 chrV 565905 . A G 125.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=20.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:158,18,0 chrV 565909 . T G 119.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=19.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:152,18,0 chrV 565932 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrV 566328 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=1.20;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrV 566353 . A G 196.01 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=0;QD=7.00;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:229,27,0 chrV 566354 . G A 202.01 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=0;QD=7.21;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:235,27,0 chrV 566373 . G T 335 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;QD=8.37;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:42:368,42,0 chrV 566376 . A G 323 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;QD=8.07;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:42:356,42,0 chrV 566388 . G A 340 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.80;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:42:373,42,0 chrV 566400 . T C 395 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;MQRankSum=-0.804;QD=7.05;ReadPosRankSum=1.670;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:48:428,48,0 chrV 566416 . G A 387 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.204;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=1.380;QD=6.56;ReadPosRankSum=1.439;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:48:420,48,0 chrV 566427 . T G 524 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;MQRankSum=1.079;QD=9.89;ReadPosRankSum=1.667;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:63:557,63,0 chrV 566434 . A G 484 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=9.31;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:54:517,54,0 chrV 566463 . G A 372 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=9.54;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:42:405,42,0 chrV 566466 . T C 365 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=9.36;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:42:398,42,0 chrV 566472 . A G 355 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=10.44;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:42:388,42,0 chrV 566499 . A G 196.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=12.25;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:229,24,0 chrV 566501 . A G 192.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=12.00;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:225,24,0 chrV 566502 . C T 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=11.38;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:215,24,0 chrV 566512 . C A 178.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=11.87;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:211,24,0 chrV 566542 . G C 724 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=19.57;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:757,93,0 chrV 566565 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=19.35;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1136,129,0 chrV 566568 . T G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=7.993;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=-1.512;QD=18.59;ReadPosRankSum=1.622;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1204,138,0 chrV 566580 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=19.20;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1569,186,0 chrV 566672 . C G 317 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=10.93;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,27:29:36:350,36,0 chrV 566696 . G T 42.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=10.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:75,9,0 chrV 567098 . G T 88.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=17.70;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:121,12,0 chrV 567115 . T G 283 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;QD=21.77;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:33:316,33,0 chrV 567180 . A G 251 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=19.31;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:284,30,0 chrV 567198 . A T 56.97 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=9.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:89,9,0 chrV 567283 . G A 62.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=8.93;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:95,12,0 chrV 567296 . T C 120.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=10.92;SB=-6.511e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:153,18,0 chrV 567300 . T C 122.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=11.10;SB=-6.511e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:155,18,0 chrV 567324 . A G 163.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=9.59;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:196,24,0 chrV 567339 . G C 188.01 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=9.90;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:221,27,0 chrV 567354 . A T 188.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=8.95;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:221,24,0 chrV 567355 . T G 180.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=8.57;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:213,24,0 chrV 567375 . A G 268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=-0.248;QD=9.57;ReadPosRankSum=1.609;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:36:301,36,0 chrV 567388 . C G 243 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=8.68;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:33:276,33,0 chrV 567395 . G A 283 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.43;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:36:316,36,0 chrV 567403 . C T 250 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.35;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:33:283,33,0 chrV 567436 . T C 205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=-1.733;QD=6.61;ReadPosRankSum=1.621;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:27:238,27,0 chrV 567461 . A G 188.03 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=6.96;SB=-6.504e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:24:221,24,0 chrV 567466 . A C 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=6.04;SB=-6.507e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:21:184,21,0 chrV 567470 . G A 159.06 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=6.12;SB=-6.507e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:21:192,21,0 chrV 567473 . T C 122.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=-0.366;QD=5.09;ReadPosRankSum=2.246;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:2,22:24:18:155,18,0 chrV 567475 . C T 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=5.09;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:160,18,0 chrV 567560 . T G 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-2.137;QD=18.08;ReadPosRankSum=2.372;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1172,126,0 chrV 567575 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=20.59;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1474,150,0 chrV 567597 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=18.64;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1524,162,0 chrV 567642 . G T 2378 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=24.02;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2411,252,0 chrV 567681 . A T 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=4.586;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=1.092;QD=24.86;ReadPosRankSum=1.694;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2320,243,0 chrV 567699 . T G 1527 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=19.83;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1560,177,0 chrV 567720 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=16.61;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1179,138,0 chrV 567724 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=16.62;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1113,126,0 chrV 567741 . G C 928 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=15.47;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:961,105,0 chrV 567743 . A C 953 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=15.13;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:986,111,0 chrV 567757 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=17.21;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1358,144,0 chrV 567867 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=18.83;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1577,165,0 chrV 567885 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=18.56;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1351,144,0 chrV 567899 . C A 1299 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=19.10;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1332,144,0 chrV 567958 . G T 2413 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=19.62;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2446,255,0 chrV 567960 . T A 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=125;Dels=0.00;FS=5.291;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;MQRankSum=-2.981;QD=19.91;ReadPosRankSum=3.360;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2522,258,0 chrV 567994 . T C 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=0.192;QD=16.69;ReadPosRankSum=1.711;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:2787,294,0 chrV 568004 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=15.78;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2605,261,0 chrV 568023 . T G 145.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.953;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=-2.205;QD=0.86;ReadPosRankSum=2.205;SB=-8.914e+01 GT:AD:DP:GQ:PL 1/1:2,18:167:18:178,18,0 chrV 568073 . T A 1957 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=10.25;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:1990,219,0 chrV 568074 . C T 1954 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=10.23;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:1987,219,0 chrV 568077 . A G 2043 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=9.59;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,211:213:99:2076,225,0 chrV 568090 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.8690;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=-2.214;QD=10.85;ReadPosRankSum=2.429;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,238:240:99:2637,285,0 chrV 568123 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.97;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3532,375,0 chrV 568132 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=236;Dels=0.00;FS=5.367;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=1.688;QD=15.89;ReadPosRankSum=1.688;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,233:236:99:3750,396,0 chrV 568152 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=225;Dels=0.00;FS=13.462;HaplotypeScore=10.3413;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=-0.050;QD=20.42;ReadPosRankSum=2.969;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:3,220:225:99:4595,475,0 chrV 568309 . G A 7922.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=11.6639;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=25.23;SB=-3.624e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7922,805,0 chrV 568351 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=24.30;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3888,396,0 chrV 568377 . T C 2415 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=20.12;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2448,267,0 chrV 568378 . G A 2515 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=21.50;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2548,264,0 chrV 568383 . A G 2227 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=1.068;QD=18.56;ReadPosRankSum=1.703;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2260,243,0 chrV 568387 . C T 2295 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=18.81;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2328,234,0 chrV 568407 . A G 2654 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.513;QD=18.18;ReadPosRankSum=2.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2687,276,0 chrV 568408 . C T 2520 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2553,276,0 chrV 568423 . C T 3001 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3034,301,0 chrV 568461 . G A 2667 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=15.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2700,282,0 chrV 568469 . G A 2600 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=16.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2633,282,0 chrV 568471 . T C 2524 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=16.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2557,282,0 chrV 568484 . A G 2100 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;MQRankSum=-2.181;QD=15.11;ReadPosRankSum=2.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2133,240,0 chrV 569519 . C T 390.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=3;MQRankSum=1.004;QD=17.73;ReadPosRankSum=1.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,18:22:29:423,29,0 chrV 569562 . A T 41.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.16;MQ0=3;QD=4.66;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:74,9,0 chrV 569619 . C T 150.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.8150;MLEAC=2;MLEAF=1.00;MQ=20.25;MQ0=2;QD=6.25;SB=-8.294e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:21:183,21,0 chrV 569663 . G A 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DP=50;Dels=0.00;FS=59.079;HaplotypeScore=25.9975;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=4;MQRankSum=3.244;QD=5.44;ReadPosRankSum=1.176;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:25,25:50:67:302,0,67 chrV 569670 . T C 351.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=53;Dels=0.00;FS=31.529;HaplotypeScore=30.7958;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=5;MQRankSum=2.695;QD=6.63;ReadPosRankSum=2.522;SB=-2.456e+02 GT:AD:DP:GQ:PL 0/1:19,34:53:5:381,0,5 chrV 569674 . A T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.411;DP=52;Dels=0.00;FS=17.767;HaplotypeScore=33.7042;MLEAC=1;MLEAF=0.500;MQ=22.06;MQ0=5;MQRankSum=0.014;QD=0.24;ReadPosRankSum=0.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,8:52:42:42,0,354 chrV 569681 . A G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DP=53;Dels=0.00;FS=28.693;HaplotypeScore=14.8512;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=6;MQRankSum=-0.061;QD=0.30;ReadPosRankSum=0.769;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,12:53:46:46,0,386 chrV 569691 . A G 266.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.209;DP=60;Dels=0.00;FS=61.840;HaplotypeScore=27.2640;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=6;MQRankSum=3.417;QD=4.43;ReadPosRankSum=2.533;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:33,27:60:99:296,0,216 chrV 569706 . A T 539 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5601;MLEAC=2;MLEAF=1.00;MQ=20.87;MQ0=5;QD=10.78;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:66:572,66,0 chrV 569712 . G T 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;DP=48;Dels=0.00;FS=17.803;HaplotypeScore=11.4570;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=5;MQRankSum=2.332;QD=6.67;ReadPosRankSum=2.612;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:16,32:48:64:350,0,64 chrV 569719 . A C 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;DP=45;Dels=0.00;FS=25.586;HaplotypeScore=11.4570;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=6;MQRankSum=2.947;QD=4.53;ReadPosRankSum=0.488;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:16,23:45:99:234,0,188 chrV 569735 . T C 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=46;Dels=0.00;FS=21.355;HaplotypeScore=8.7374;MLEAC=1;MLEAF=0.500;MQ=17.12;MQ0=14;MQRankSum=-2.077;QD=3.50;ReadPosRankSum=3.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,16:46:99:191,0,219 chrV 569746 . G A 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=47;Dels=0.00;FS=27.587;HaplotypeScore=6.5093;MLEAC=1;MLEAF=0.500;MQ=14.17;MQ0=19;MQRankSum=-0.746;QD=3.81;ReadPosRankSum=3.575;SB=0.037 GT:AD:DP:GQ:PL 0/1:23,23:47:65:209,0,65 chrV 569767 . G A 215.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=57;Dels=0.00;FS=8.172;HaplotypeScore=9.0054;MLEAC=1;MLEAF=0.500;MQ=13.09;MQ0=17;MQRankSum=3.069;QD=3.77;ReadPosRankSum=1.756;SB=-2.390e+01 GT:AD:DP:GQ:PL 0/1:38,18:57:16:245,0,16 chrV 569778 . A G 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DP=89;Dels=0.00;FS=9.852;HaplotypeScore=25.1027;MLEAC=1;MLEAF=0.500;MQ=12.00;MQ0=17;MQRankSum=2.668;QD=1.03;ReadPosRankSum=1.713;SB=1.18 GT:AD:DP:GQ:PL 0/1:74,11:89:62:122,0,62 chrV 569806 . G A 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;DP=140;Dels=0.00;FS=7.209;HaplotypeScore=13.0793;MLEAC=1;MLEAF=0.500;MQ=13.85;MQ0=28;MQRankSum=0.242;QD=0.44;ReadPosRankSum=-2.239;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:118,16:140:91:91,0,161 chrV 569821 . A G 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=168;Dels=0.01;FS=7.410;HaplotypeScore=23.7846;MLEAC=1;MLEAF=0.500;MQ=14.63;MQ0=30;MQRankSum=-3.800;QD=0.50;ReadPosRankSum=8.143;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:69,96:166:99:114,0,460 chrV 569838 . A G 513.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DP=169;Dels=0.00;FS=18.918;HaplotypeScore=5.6767;MLEAC=1;MLEAF=0.500;MQ=15.64;MQ0=22;MQRankSum=3.871;QD=3.04;ReadPosRankSum=1.653;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:95,74:169:99:543,0,267 chrV 569875 . G A 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;DP=124;Dels=0.00;FS=4.865;HaplotypeScore=34.8877;MLEAC=1;MLEAF=0.500;MQ=17.19;MQ0=21;MQRankSum=0.588;QD=0.56;ReadPosRankSum=-0.642;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:91,33:124:99:99,0,893 chrV 569889 . T G 375.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.401;DP=103;Dels=0.00;FS=1.815;HaplotypeScore=41.0081;MLEAC=1;MLEAF=0.500;MQ=18.45;MQ0=14;MQRankSum=-2.104;QD=3.64;ReadPosRankSum=2.554;SB=-2.240e+02 GT:AD:DP:GQ:PL 0/1:51,51:103:99:405,0,542 chrV 569890 . T A 381.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DP=102;Dels=0.00;FS=2.886;HaplotypeScore=43.7817;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=13;MQRankSum=-1.736;QD=3.74;ReadPosRankSum=2.466;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:51,51:102:99:411,0,516 chrV 569904 . C T 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=62;Dels=0.00;FS=27.482;HaplotypeScore=22.0900;MLEAC=1;MLEAF=0.500;MQ=16.37;MQ0=10;MQRankSum=-1.702;QD=2.27;ReadPosRankSum=-0.611;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:37,25:62:99:171,0,370 chrV 569911 . G T 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;DP=46;Dels=0.00;FS=1.543;HaplotypeScore=13.5575;MLEAC=1;MLEAF=0.500;MQ=16.56;MQ0=5;MQRankSum=1.622;QD=1.67;ReadPosRankSum=-1.654;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:36,10:46:99:107,0,321 chrV 569916 . A G 242.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;DP=45;Dels=0.00;FS=24.381;HaplotypeScore=24.8661;MLEAC=1;MLEAF=0.500;MQ=16.29;MQ0=4;MQRankSum=1.476;QD=5.38;ReadPosRankSum=0.989;SB=-5.700e+01 GT:AD:DP:GQ:PL 0/1:15,30:45:99:272,0,123 chrV 569918 . G A 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DP=44;Dels=0.00;FS=27.105;HaplotypeScore=23.8714;MLEAC=1;MLEAF=0.500;MQ=15.89;MQ0=4;MQRankSum=-0.398;QD=2.18;ReadPosRankSum=-1.520;SB=-2.700e+01 GT:AD:DP:GQ:PL 0/1:29,15:44:99:126,0,250 chrV 569922 . G A 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DP=44;Dels=0.00;FS=24.395;HaplotypeScore=17.1290;MLEAC=1;MLEAF=0.500;MQ=15.35;MQ0=4;MQRankSum=0.922;QD=1.84;ReadPosRankSum=4.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,14:44:99:111,0,224 chrV 569993 . A C 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.381;DP=106;Dels=0.00;FS=11.897;HaplotypeScore=20.3175;MLEAC=1;MLEAF=0.500;MQ=14.28;MQ0=17;MQRankSum=-2.263;QD=0.75;ReadPosRankSum=3.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,66:106:99:110,0,186 chrV 569994 . G A 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=106;Dels=0.00;FS=13.598;HaplotypeScore=17.4060;MLEAC=1;MLEAF=0.500;MQ=14.28;MQ0=17;MQRankSum=-1.297;QD=0.94;ReadPosRankSum=3.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,70:106:99:130,0,165 chrV 569995 . G A 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DP=116;Dels=0.00;FS=9.815;HaplotypeScore=17.4060;MLEAC=1;MLEAF=0.500;MQ=14.33;MQ0=18;MQRankSum=-2.860;QD=0.71;ReadPosRankSum=4.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,66:116:99:112,0,188 chrV 570003 . T C 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.494;DP=129;Dels=0.00;FS=9.784;HaplotypeScore=45.3725;MLEAC=1;MLEAF=0.500;MQ=14.92;MQ0=19;MQRankSum=-2.322;QD=0.76;ReadPosRankSum=1.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,74:129:99:128,0,197 chrV 570028 . G A 131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;DP=124;Dels=0.00;FS=12.085;HaplotypeScore=106.1848;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=21;MQRankSum=-0.846;QD=1.06;ReadPosRankSum=2.911;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:77,47:124:99:161,0,130 chrV 570039 . C T 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.1803;MLEAC=2;MLEAF=1.00;MQ=14.99;MQ0=21;QD=3.29;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:42:365,42,0 chrV 570041 . C T 338 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.1803;MLEAC=2;MLEAF=1.00;MQ=14.99;MQ0=21;QD=3.35;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:42:371,42,0 chrV 570042 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.1803;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=21;MQRankSum=1.741;QD=1.03;ReadPosRankSum=-2.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,54:101:99:134,0,156 chrV 570069 . A G 72.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.788;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=33.0134;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=10;MQRankSum=-1.967;QD=1.11;ReadPosRankSum=3.170;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:34,31:65:12:102,0,12 chrV 570100 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.612;DP=22;Dels=0.00;FS=3.245;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=14.68;MQ0=3;MQRankSum=-0.531;QD=0.55;ReadPosRankSum=1.592;SB=1.37 GT:AD:DP:GQ:PL 1/1:11,11:22:6:43,6,0 chrV 570125 . G A 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=10;Dels=0.00;FS=8.451;HaplotypeScore=5.1252;MLEAC=1;MLEAF=0.500;MQ=12.45;MQ0=3;MQRankSum=0.937;QD=2.32;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,3:10:10:53,0,10 chrV 570134 . T C 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.3918;MLEAC=1;MLEAF=0.500;MQ=11.85;MQ0=5;MQRankSum=0.736;QD=2.11;ReadPosRankSum=0.736;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:2,9:11:10:53,0,10 chrV 570144 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=11;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.69;MQ0=6;MQRankSum=1.231;QD=3.00;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,3:11:9:65,9,0 chrV 570147 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=6;QD=3.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrV 570209 . G T 54.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.086;DP=43;Dels=0.00;FS=15.194;HaplotypeScore=19.6703;MLEAC=2;MLEAF=1.00;MQ=14.44;MQ0=11;MQRankSum=3.742;QD=1.28;ReadPosRankSum=-1.907;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:33,10:43:9:87,9,0 chrV 570218 . G A 109.26 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=21.0745;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=11;QD=2.23;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:15:142,15,0 chrV 570269 . G A 30.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8295;MLEAC=1;MLEAF=0.500;MQ=13.73;MQ0=3;MQRankSum=2.862;QD=0.56;ReadPosRankSum=2.342;SB=-2.253e+00 GT:AD:DP:GQ:PL 0/1:51,3:54:10:60,0,10 chrV 570270 . A T 30.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=45;Dels=0.00;FS=10.000;HaplotypeScore=1.9628;MLEAC=1;MLEAF=0.500;MQ=14.34;MQ0=2;MQRankSum=1.231;QD=0.67;ReadPosRankSum=1.231;SB=-2.253e+00 GT:AD:DP:GQ:PL 0/1:4,3:45:10:60,0,10 chrV 570271 . C G 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=14.34;MQ0=2;QD=1.48;SB=-4.655e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:12:99,12,0 chrV 570291 . A G 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.182;DP=38;Dels=0.00;FS=26.251;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=0;MQRankSum=3.823;QD=2.38;ReadPosRankSum=0.220;SB=-6.430e+01 GT:AD:DP:GQ:PL 1/1:32,6:38:15:123,15,0 chrV 570667 . T A 208.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.095;DP=125;Dels=0.00;FS=28.587;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.500;MQ=9.97;MQ0=65;MQRankSum=4.050;QD=1.67;ReadPosRankSum=4.035;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/1:75,50:125:1:237,0,1 chrV 570668 . A T 226.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.741;DP=124;Dels=0.00;FS=28.353;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=10.17;MQ0=63;MQRankSum=4.178;QD=1.82;ReadPosRankSum=4.047;SB=-2.066e+02 GT:AD:DP:GQ:PL 1/1:75,49:124:1:255,1,0 chrV 570672 . C G 399.05 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.910;DP=119;Dels=0.00;FS=23.588;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=10.17;MQ0=62;MQRankSum=3.840;QD=3.35;ReadPosRankSum=4.400;SB=-2.025e+02 GT:AD:DP:GQ:PL 1/1:64,52:119:22:432,22,0 chrV 571862 . C T 17.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=4.90;MQ0=104;MQRankSum=0.736;QD=0.16;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,34:108:20:47,0,20 chrVI 4568 . C A 182.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=19;Dels=0.00;FS=11.761;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.77;MQ0=4;MQRankSum=0.116;QD=9.58;ReadPosRankSum=-0.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:24:215,24,0 chrVI 4686 . C A 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=62;Dels=0.02;FS=1.269;HaplotypeScore=58.6447;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=11;MQRankSum=-3.021;QD=0.90;ReadPosRankSum=1.454;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:39,21:61:86:86,0,248 chrVI 4870 . T C 70.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=53.7208;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=0;MQRankSum=-2.030;QD=1.28;ReadPosRankSum=0.677;SB=2.49 GT:AD:DP:GQ:PL 1/1:6,27:55:12:103,12,0 chrVI 4871 . C A 40.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=54;Dels=0.00;FS=46.632;HaplotypeScore=51.2226;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=0;MQRankSum=0.634;QD=0.74;ReadPosRankSum=0.777;SB=-9.212e-02 GT:AD:DP:GQ:PL 0/1:29,24:54:14:70,0,14 chrVI 4892 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=13.6313;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=1.13;SB=-9.198e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:9:74,9,0 chrVI 4897 . C T 43.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=7.8025;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=0;MQRankSum=-0.948;QD=1.79;ReadPosRankSum=0.118;SB=-6.070e-02 GT:AD:DP:GQ:PL 0/1:3,15:24:16:73,0,16 chrVI 4993 . G A 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=65;Dels=0.00;FS=22.686;HaplotypeScore=39.2038;MLEAC=1;MLEAF=0.500;MQ=17.62;MQ0=14;MQRankSum=3.463;QD=0.91;ReadPosRankSum=-0.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,7:65:89:89,0,204 chrVI 4995 . C T 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DP=66;Dels=0.00;FS=35.161;HaplotypeScore=42.1782;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=14;MQRankSum=2.763;QD=0.97;ReadPosRankSum=1.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,5:66:94:94,0,191 chrVI 4999 . A C 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;DP=66;Dels=0.00;FS=43.690;HaplotypeScore=19.6633;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=14;MQRankSum=2.574;QD=1.00;ReadPosRankSum=0.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,8:66:96:96,0,188 chrVI 5000 . C A 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;DP=66;Dels=0.00;FS=52.277;HaplotypeScore=19.6633;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=14;MQRankSum=2.735;QD=1.00;ReadPosRankSum=0.912;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,7:66:96:96,0,191 chrVI 5001 . C T 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;DP=66;Dels=0.00;FS=52.277;HaplotypeScore=19.6633;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=14;MQRankSum=2.225;QD=1.00;ReadPosRankSum=0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,7:66:96:96,0,189 chrVI 5027 . T C 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;DP=64;Dels=0.00;FS=81.822;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=17.24;MQ0=12;MQRankSum=1.970;QD=0.94;ReadPosRankSum=0.794;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,14:64:90:90,0,205 chrVI 5028 . G A 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DP=64;Dels=0.00;FS=81.822;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=17.24;MQ0=12;MQRankSum=1.413;QD=1.00;ReadPosRankSum=1.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,14:64:94:94,0,185 chrVI 5169 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.749;DP=11;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.387;QD=2.16;ReadPosRankSum=0.717;SB=-5.376e+01 GT:AD:DP:GQ:PL 1/1:5,6:11:6:55,6,0 chrVI 5207 . T C 136.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=14;Dels=0.00;FS=4.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=1;MQRankSum=-1.203;QD=9.72;ReadPosRankSum=1.470;SB=-9.804e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:21:169,21,0 chrVI 5211 . C T 133.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DP=18;Dels=0.00;FS=6.422;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=1;MQRankSum=-0.567;QD=7.39;ReadPosRankSum=0.567;SB=-9.806e+01 GT:AD:DP:GQ:PL 1/1:3,15:18:21:166,21,0 chrVI 5225 . G A 272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=2;MQRankSum=-1.004;QD=12.95;ReadPosRankSum=1.187;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:36:305,36,0 chrVI 5243 . G C 240 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=2;QD=12.00;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:273,33,0 chrVI 5257 . C T 240 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.00;MQ0=5;QD=10.43;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:2,21:23:33:273,33,0 chrVI 5311 . G C 45.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=3.28;SB=-2.991e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:9:78,9,0 chrVI 5318 . T G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=3;QD=1.98;SB=-3.164e+01 GT:AD:DP:GQ:PL 1/1:2,10:12:6:55,6,0 chrVI 5323 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=3;QD=1.91;SB=-5.664e+01 GT:AD:DP:GQ:PL 1/1:2,11:13:6:56,6,0 chrVI 5344 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=1;QD=2.16;SB=-6.064e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:55,6,0 chrVI 5352 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;QD=2.53;SB=-5.251e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:54,6,0 chrVI 5357 . C G 17.45 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=0;QD=1.74;SB=18.59 GT:AD:DP:GQ:PL 1/1:0,3:10:6:48,6,0 chrVI 5360 . G A 10.46 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=0;MQRankSum=0.895;QD=1.05;ReadPosRankSum=0.546;SB=-2.085e+00 GT:AD:DP:GQ:PL 0/1:7,3:10:17:40,0,17 chrVI 5367 . A G 10.47 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=0;MQRankSum=0.296;QD=1.05;ReadPosRankSum=0.296;SB=-2.096e+00 GT:AD:DP:GQ:PL 0/1:7,3:10:16:40,0,16 chrVI 5379 . A C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=0;QD=4.36;SB=-9.972e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:80,9,0 chrVI 5382 . C T 11.36 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DP=11;Dels=0.00;FS=25.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=0;MQRankSum=0.278;QD=1.03;ReadPosRankSum=1.769;SB=-2.069e+00 GT:AD:DP:GQ:PL 0/1:7,4:11:19:41,0,19 chrVI 5383 . C T 11.36 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=10;Dels=0.00;FS=23.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=0;MQRankSum=0.365;QD=1.14;ReadPosRankSum=2.072;SB=-2.528e+00 GT:AD:DP:GQ:PL 0/1:6,4:10:19:41,0,19 chrVI 5404 . T A 96.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=13.75;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:129,15,0 chrVI 5410 . T G 117.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=16.73;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:150,18,0 chrVI 5415 . G A 119.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=17.02;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:152,18,0 chrVI 5438 . T C 139.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=17.38;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:172,21,0 chrVI 5448 . C T 122.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=2;QD=12.21;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:18:155,18,0 chrVI 5459 . A G 230 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=2;QD=13.53;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:263,30,0 chrVI 5466 . C T 271.08 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=21;Dels=0.00;FS=14.065;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=3;MQRankSum=1.616;QD=12.91;ReadPosRankSum=2.178;SB=-4.709e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:20:304,20,0 chrVI 5541 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DP=34;Dels=0.00;FS=45.171;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=6;MQRankSum=0.639;QD=1.97;ReadPosRankSum=-3.935;SB=-4.750e+00 GT:AD:DP:GQ:PL 0/1:23,11:34:97:97,0,321 chrVI 5554 . G C 343 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=6;QD=12.70;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,25:27:45:376,45,0 chrVI 5581 . C T 37.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.9765;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=3;MQRankSum=-1.271;QD=2.85;ReadPosRankSum=1.271;SB=-1.126e-01 GT:AD:DP:GQ:PL 0/1:2,11:13:13:67,0,13 chrVI 5761 . A C 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=53;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=3;MQRankSum=0.693;QD=18.75;ReadPosRankSum=1.663;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1027,114,0 chrVI 5764 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=3;QD=19.19;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1031,114,0 chrVI 5801 . A G 59.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;MQRankSum=0.751;QD=6.61;ReadPosRankSum=0.751;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:12:92,12,0 chrVI 5804 . A G 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=0.727;QD=9.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:69,9,0 chrVI 5857 . T C 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrVI 5862 . G T 56.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=18.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:89,9,0 chrVI 5864 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrVI 5865 . T A 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=17.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:84,9,0 chrVI 5879 . T C 179.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=12.79;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:212,24,0 chrVI 5883 . A G 244 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=15.25;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:277,30,0 chrVI 5892 . G T 238 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=13.22;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:271,33,0 chrVI 6763 . G A 105.26 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.42;MQ0=26;QD=2.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:15:138,15,0 chrVI 6776 . G T 105.26 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.42;MQ0=26;QD=2.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:15:138,15,0 chrVI 7037 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.03;MQ0=17;QD=0.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:68:6:53,6,0 chrVI 7397 . G T 384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;DP=349;Dels=0.00;FS=2.771;HaplotypeScore=29.4101;MLEAC=1;MLEAF=0.500;MQ=15.70;MQ0=138;MQRankSum=0.961;QD=1.10;ReadPosRankSum=3.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,77:349:99:414,0,1831 chrVI 7414 . T A 709.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.277;DP=265;Dels=0.00;FS=18.252;HaplotypeScore=25.0040;MLEAC=1;MLEAF=0.500;MQ=20.18;MQ0=100;MQRankSum=-0.893;QD=2.68;ReadPosRankSum=3.362;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:177,88:265:99:739,0,1483 chrVI 7415 . T C 2459 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.981;DP=266;Dels=0.00;FS=2.987;HaplotypeScore=25.6945;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=98;MQRankSum=-0.192;QD=9.24;ReadPosRankSum=0.894;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:11,253:266:99:2492,155,0 chrVI 7418 . C T 1025.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.054;DP=255;Dels=0.00;FS=18.047;HaplotypeScore=24.2813;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=89;MQRankSum=-0.018;QD=4.02;ReadPosRankSum=1.414;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:157,97:255:99:1055,0,1327 chrVI 7511 . A G 1050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;DP=292;Dels=0.00;FS=22.452;HaplotypeScore=10.2963;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=65;MQRankSum=-0.201;QD=3.60;ReadPosRankSum=2.588;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:164,127:292:99:1080,0,1799 chrVI 7520 . T C 3354.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=74;MQRankSum=1.082;QD=11.69;ReadPosRankSum=1.163;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:2,285:287:99:3354,395,0 chrVI 7532 . G A 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DP=261;Dels=0.00;FS=12.089;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=78;MQRankSum=-0.148;QD=0.43;ReadPosRankSum=0.717;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:224,37:261:99:141,0,1810 chrVI 7619 . A T 916 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=19;QD=12.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:949,122,0 chrVI 7643 . G C 909 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=8;QD=14.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:942,117,0 chrVI 7656 . C T 918 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=9;QD=14.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:951,111,0 chrVI 7684 . C G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=19;MQRankSum=-1.346;QD=0.21;ReadPosRankSum=-0.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,8:50:40:40,0,336 chrVI 7692 . A G 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9202;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=21;MQRankSum=-0.520;QD=0.36;ReadPosRankSum=1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,5:47:47:47,0,206 chrVI 7693 . G A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9202;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=21;MQRankSum=-0.335;QD=0.34;ReadPosRankSum=1.603;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,5:44:45:45,0,193 chrVI 7698 . C T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9202;MLEAC=1;MLEAF=0.500;MQ=17.41;MQ0=27;MQRankSum=2.327;QD=1.78;ReadPosRankSum=-0.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,12:46:99:112,0,105 chrVI 7699 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9202;MLEAC=1;MLEAF=0.500;MQ=17.41;MQ0=27;MQRankSum=-0.219;QD=0.29;ReadPosRankSum=1.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,11:46:43:43,0,143 chrVI 7701 . T C 244 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=49;Dels=0.00;FS=31.875;HaplotypeScore=6.2863;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=27;MQRankSum=1.818;QD=4.98;ReadPosRankSum=2.679;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:3,46:49:30:277,30,0 chrVI 7740 . C T 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.43;MQ0=43;QD=2.73;SB=-1.028e+02 GT:AD:DP:GQ:PL 1/1:28,26:55:21:183,21,0 chrVI 7745 . A T 95.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=47;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.12;MQ0=38;MQRankSum=-1.666;QD=2.03;ReadPosRankSum=1.666;SB=-5.276e+01 GT:AD:DP:GQ:PL 1/1:2,45:47:15:128,15,0 chrVI 7746 . G A 94.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.55;MQ0=43;QD=1.89;SB=-5.676e+01 GT:AD:DP:GQ:PL 1/1:28,22:50:15:127,15,0 chrVI 7752 . G A 91.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.00;MQ0=50;QD=1.60;SB=-5.076e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:15:124,15,0 chrVI 8094 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.41;MQ0=54;QD=0.35;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:6:51,6,0 chrVI 8893 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.37;MQ0=18;QD=2.09;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:78,9,0 chrVI 9959 . G A 2620.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.535;DP=421;Dels=0.00;FS=0.883;HaplotypeScore=12.7420;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=117;MQRankSum=0.988;QD=6.22;ReadPosRankSum=-0.872;SB=-1.076e+03 GT:AD:DP:GQ:PL 0/1:224,194:421:99:2650,0,3189 chrVI 11006 . A G 178.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.060;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=1;MQRankSum=1.898;QD=7.12;ReadPosRankSum=2.905;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:4,21:25:24:211,24,0 chrVI 11104 . G A 891.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=130;Dels=0.00;FS=2.420;HaplotypeScore=6.3851;MLEAC=1;MLEAF=0.500;MQ=34.14;MQ0=15;MQRankSum=0.532;QD=6.85;ReadPosRankSum=-0.589;SB=-5.800e+02 GT:AD:DP:GQ:PL 0/1:60,68:130:99:921,0,765 chrVI 11211 . G T 217.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=3;QD=13.56;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:250,27,0 chrVI 11314 . G A 696 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.04;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=6;QD=13.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:50:81:729,81,0 chrVI 11941 . C G 5588.01 filter AC=2;AF=1.00;AN=2;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=146;QD=12.67;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,439:441:99:5588,624,0 chrVI 12139 . C T 10013.01 filter AC=2;AF=1.00;AN=2;DP=471;Dels=0.00;FS=0.000;HaplotypeScore=33.5628;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=21.26;SB=-5.500e+03 GT:AD:DP:GQ:PL 1/1:0,467:471:99:10013,1084,0 chrVI 12289 . G T 1769.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.487;DP=317;Dels=0.00;FS=14.327;HaplotypeScore=26.0836;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=27;MQRankSum=1.323;QD=5.58;ReadPosRankSum=0.791;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:168,144:316:99:1799,0,2444 chrVI 12416 . T A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=23.12;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4671,531,0 chrVI 12436 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=1;QD=24.32;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4718,510,0 chrVI 12453 . T C 3816.01 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=20;QD=21.68;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3816,414,0 chrVI 12495 . A T 441 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=73;Dels=0.00;FS=3.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=49;MQRankSum=-1.306;QD=6.04;ReadPosRankSum=1.306;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:54:474,54,0 chrVI 12663 . T C 731 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=38;QD=9.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:77:87:764,87,0 chrVI 12665 . C T 724 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=37;QD=9.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:73:87:757,87,0 chrVI 14675 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrVI 14680 . T C 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrVI 14683 . C T 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:83,9,0 chrVI 14696 . T C 105.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.16;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:138,15,0 chrVI 14704 . A G 159.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.91;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:192,21,0 chrVI 14713 . A G 145.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.16;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:178,21,0 chrVI 14722 . G A 152.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.14;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:185,21,0 chrVI 14734 . G A 169.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.27;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:202,21,0 chrVI 14737 . G T 163.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.87;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:196,21,0 chrVI 14749 . G A 168.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.20;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:201,21,0 chrVI 14755 . C T 156.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:189,21,0 chrVI 14758 . A T 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.22;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:162,18,0 chrVI 14770 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.54;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:99,12,0 chrVI 14773 . A C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.59;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:105,12,0 chrVI 14779 . T C 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.82;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:58,6,0 chrVI 14782 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrVI 14788 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrVI 14884 . C T 130.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.46;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:163,18,0 chrVI 14922 . C G 142.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.47;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:175,21,0 chrVI 14925 . T A 223.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.87;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:256,27,0 chrVI 14931 . G A 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=10.45;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,19:20:27:242,27,0 chrVI 14991 . T A 184 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=18.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:30:217,30,0 chrVI 15003 . A G 141.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-1.741;QD=14.12;ReadPosRankSum=-1.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,9:10:8:173,8,0 chrVI 15021 . G A 121.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.751;QD=13.46;ReadPosRankSum=-0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:9:5:152,5,0 chrVI 15030 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrVI 15147 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:65,9,0 chrVI 15150 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:65,9,0 chrVI 15177 . G A 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.00;MQ0=0;MQRankSum=-0.751;QD=2.58;ReadPosRankSum=0.751;SB=-1.100e+00 GT:AD:DP:GQ:PL 0/1:1,8:9:10:53,0,10 chrVI 15201 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrVI 15204 . A G 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.00;MQ0=0;MQRankSum=0.736;QD=3.87;ReadPosRankSum=-0.736;SB=0.570 GT:AD:DP:GQ:PL 0/1:1,5:6:10:53,0,10 chrVI 16594 . A G 66.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=7.39;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:99,12,0 chrVI 16603 . G A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=7.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:96,12,0 chrVI 16605 . G C 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=6.61;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:92,12,0 chrVI 16606 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=1.87;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:48,6,0 chrVI 16609 . G T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=1.87;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:48,6,0 chrVI 16611 . G T 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=7.28;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:98,12,0 chrVI 16618 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=6.83;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:94,12,0 chrVI 16620 . G A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=7.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:96,12,0 chrVI 16688 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=0.71;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:54,6,0 chrVI 16689 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=0.62;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:51,6,0 chrVI 16696 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=0.74;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:57,6,0 chrVI 16699 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=0.62;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:53,6,0 chrVI 16722 . C T 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=2.04;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:104,12,0 chrVI 16723 . T C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=2.04;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:104,12,0 chrVI 16726 . A C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=2.07;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:105,12,0 chrVI 16727 . A G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=1.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:35:12:102,12,0 chrVI 16730 . G A 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=1.96;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:12:115,12,0 chrVI 16733 . T A 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=1.69;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:107,12,0 chrVI 16736 . T C 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=1.72;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:108,12,0 chrVI 16759 . C G 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=3.14;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:24:215,24,0 chrVI 16763 . T C 185.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=45.4259;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=3.19;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:24:218,24,0 chrVI 16769 . C T 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=227.1294;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.53;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:220,24,0 chrVI 16770 . G C 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=227.1294;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.42;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:214,24,0 chrVI 16803 . G C 273 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=3.25;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:36:306,36,0 chrVI 16818 . A C 412 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=4.53;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:54:445,54,0 chrVI 16824 . A C 569 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=6.18;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:75:602,75,0 chrVI 16826 . G C 588 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=6.26;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:75:621,75,0 chrVI 16830 . T C 642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;MQRankSum=-1.606;QD=5.84;ReadPosRankSum=1.669;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:81:675,81,0 chrVI 16896 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=20.24;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2806,306,0 chrVI 16918 . A C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=13.251;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=1.475;QD=20.46;ReadPosRankSum=2.936;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2959,321,0 chrVI 16931 . A T 2932 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=19.29;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2965,318,0 chrVI 17148 . G A 5466.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=24.08;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5466,589,0 chrVI 17210 . A C 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=224;Dels=0.00;FS=2.987;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.691;QD=21.36;ReadPosRankSum=2.405;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4784,532,0 chrVI 17394 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.24;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3694,402,0 chrVI 17399 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=6.234;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.403;QD=17.53;ReadPosRankSum=2.344;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3296,381,0 chrVI 17653 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=3.222;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.567;QD=21.04;ReadPosRankSum=1.591;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3147,348,0 chrVI 17723 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.32;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2756,291,0 chrVI 17807 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=24.58;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4031,441,0 chrVI 17843 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.343;QD=21.78;ReadPosRankSum=1.712;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3702,411,0 chrVI 17852 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=3.142;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.902;QD=19.91;ReadPosRankSum=1.711;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,166:171:99:3404,375,0 chrVI 17963 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.84;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4613,510,0 chrVI 17987 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.13;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4404,492,0 chrVI 18017 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.3582;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.28;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4097,471,0 chrVI 18212 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.33;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4095,453,0 chrVI 18304 . T G 4041.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.58;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4041,444,0 chrVI 18339 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.41;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3202,363,0 chrVI 18358 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.49;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3148,357,0 chrVI 18380 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.14;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3467,378,0 chrVI 18546 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=3.027;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.639;QD=20.61;ReadPosRankSum=2.416;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3083,357,0 chrVI 18618 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.48;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2866,312,0 chrVI 18651 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5549;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.07;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2824,315,0 chrVI 18719 . C A 2444 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=20.03;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2477,276,0 chrVI 18731 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=110.1819;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=20.69;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2578,285,0 chrVI 18775 . G C 2605 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3654;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.30;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2638,288,0 chrVI 18810 . G C 3007 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.60;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3040,345,0 chrVI 19068 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.252;QD=23.57;ReadPosRankSum=1.631;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2484,279,0 chrVI 19129 . A T 2403 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.56;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2436,273,0 chrVI 19184 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=24.52;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2657,288,0 chrVI 19202 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.88;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2618,288,0 chrVI 19219 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.51;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2216,240,0 chrVI 19333 . T A 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.547;QD=22.66;ReadPosRankSum=1.702;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2616,282,0 chrVI 19346 . C T 2703 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.62;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2736,306,0 chrVI 19414 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7662;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.57;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2147,249,0 chrVI 19460 . T A 1611 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.31;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1644,189,0 chrVI 19466 . A C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=88;Dels=0.00;FS=6.909;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.266;QD=18.20;ReadPosRankSum=2.394;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1635,183,0 chrVI 19604 . A T 2127 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.85;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2160,246,0 chrVI 19616 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1394;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.70;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2206,240,0 chrVI 19711 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=24.75;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2186,234,0 chrVI 19827 . G T 2112 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=23.73;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2145,243,0 chrVI 19853 . C G 1813 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=21.33;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1846,213,0 chrVI 19876 . A T 1545 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=17.76;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1578,186,0 chrVI 19914 . A T 881 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=13.55;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:914,108,0 chrVI 19919 . C T 1011 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=15.55;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1044,114,0 chrVI 19923 . T C 849 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=1.679;QD=13.06;ReadPosRankSum=1.679;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:882,99,0 chrVI 19942 . A G 876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;MQRankSum=-1.312;QD=13.27;ReadPosRankSum=1.680;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:909,105,0 chrVI 19952 . C A 745 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.42;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:778,87,0 chrVI 19961 . C A 706 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:87:739,87,0 chrVI 19969 . G C 707 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=11.22;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:87:740,87,0 chrVI 19972 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=10.48;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:87:735,87,0 chrVI 19980 . C T 997 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=12.46;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1030,123,0 chrVI 20043 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=15.78;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1485,165,0 chrVI 20049 . A G 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;MQRankSum=-0.456;QD=15.05;ReadPosRankSum=1.696;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1493,174,0 chrVI 20087 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=13.99;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1180,141,0 chrVI 20096 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=11.11;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:922,111,0 chrVI 20103 . T C 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;MQRankSum=-0.917;QD=10.80;ReadPosRankSum=1.651;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:951,117,0 chrVI 20134 . T C 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=2.845;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=-1.465;QD=16.75;ReadPosRankSum=2.376;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1708,201,0 chrVI 20162 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=17.57;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2071,237,0 chrVI 20170 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.802;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=1.443;QD=17.98;ReadPosRankSum=1.703;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2191,249,0 chrVI 20226 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.2328;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.597;QD=19.47;ReadPosRankSum=1.702;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2292,261,0 chrVI 20296 . C A 2186 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=22.77;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2219,252,0 chrVI 20333 . T G 1842 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=21.42;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1875,204,0 chrVI 20335 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;MQRankSum=-1.690;QD=21.18;ReadPosRankSum=1.690;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1770,201,0 chrVI 20390 . A G 1479 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.13;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1512,168,0 chrVI 20451 . A G 688 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.59;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:721,81,0 chrVI 20567 . A C 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.02;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:137,15,0 chrVI 20569 . G A 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.96;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:110,12,0 chrVI 20573 . T A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=3.92;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:83,9,0 chrVI 20719 . C G 766 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=47.6401;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=13.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:87:799,87,0 chrVI 20748 . G A 396 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=6.19;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:48:429,48,0 chrVI 20752 . A C 394 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=6.06;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:48:427,48,0 chrVI 20756 . A T 431 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=6.63;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:51:464,51,0 chrVI 20768 . C T 561 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.221;QD=9.20;ReadPosRankSum=1.675;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:63:594,63,0 chrVI 20769 . G C 499 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.32;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:60:532,60,0 chrVI 20770 . G A 550 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=8.73;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:63:583,63,0 chrVI 20774 . T C 679 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=9.70;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:712,78,0 chrVI 20817 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=16.88;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1451,159,0 chrVI 20952 . A T 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.948;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.461;QD=20.91;ReadPosRankSum=1.682;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2939,330,0 chrVI 21060 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6680;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.10;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4193,456,0 chrVI 21267 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3473,384,0 chrVI 21408 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.40;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3158,363,0 chrVI 21492 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5199;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.64;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3398,372,0 chrVI 21549 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.53;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3418,384,0 chrVI 21552 . C A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.98;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3303,375,0 chrVI 21881 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.11;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3670,399,0 chrVI 21975 . G A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.73;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4432,486,0 chrVI 21999 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.38;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3912,429,0 chrVI 22012 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.351;DP=182;Dels=0.00;FS=17.692;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.133;QD=16.12;ReadPosRankSum=4.070;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:7,173:182:99:2967,333,0 chrVI 22035 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=17.39;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3305,378,0 chrVI 22065 . A T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.58;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3524,384,0 chrVI 22204 . C G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9181;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.99;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,206:213:99:4470,510,0 chrVI 22274 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=3.025;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.059;QD=17.39;ReadPosRankSum=2.199;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3408,384,0 chrVI 22395 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.267;QD=19.64;ReadPosRankSum=1.715;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4007,456,0 chrVI 22414 . A C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.374;QD=18.87;ReadPosRankSum=1.716;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4076,456,0 chrVI 22525 . G C 3884.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.19;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3884,450,0 chrVI 22632 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.837;QD=21.70;ReadPosRankSum=1.675;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3950,453,0 chrVI 22715 . T G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.62;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3395,387,0 chrVI 22833 . T G 3020 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.23;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3053,342,0 chrVI 22905 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=22.24;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2457,261,0 chrVI 22923 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=110;Dels=0.00;FS=2.695;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-0.541;QD=20.01;ReadPosRankSum=2.404;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,105:110:99:2234,240,0 chrVI 22927 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=-0.497;QD=18.61;ReadPosRankSum=-1.732;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2173,218,0 chrVI 23085 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.33;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2311,258,0 chrVI 23172 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.00;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1375,156,0 chrVI 23305 . T G 2094 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.37;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2127,243,0 chrVI 23330 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.507;QD=23.73;ReadPosRankSum=1.642;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1860,204,0 chrVI 23356 . G T 1952 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.77;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1985,216,0 chrVI 23390 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.40;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2644,303,0 chrVI 23608 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.83;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4279,468,0 chrVI 23620 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.56;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4291,468,0 chrVI 24214 . G T 5251.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=21.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5251,576,0 chrVI 26594 . A T 2996 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3029,333,0 chrVI 27338 . G C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0043;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=23.19;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3687,414,0 chrVI 27371 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=22.46;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3481,393,0 chrVI 27376 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=22.88;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3523,393,0 chrVI 27436 . T A 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.206;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.340;QD=22.30;ReadPosRankSum=1.710;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3546,393,0 chrVI 27484 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.06;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:3972,444,0 chrVI 27574 . T C 832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=2.887;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;MQRankSum=-1.324;QD=5.37;ReadPosRankSum=2.418;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:865,99,0 chrVI 27592 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.277;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=1.204;QD=10.19;ReadPosRankSum=1.640;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:1571,171,0 chrVI 27660 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.338;QD=21.81;ReadPosRankSum=1.712;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3838,435,0 chrVI 27763 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.707;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;MQRankSum=-0.642;QD=22.22;ReadPosRankSum=1.689;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3622,417,0 chrVI 27878 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=136;Dels=0.00;FS=7.624;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.615;QD=19.26;ReadPosRankSum=2.358;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2652,300,0 chrVI 27960 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=89.0168;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.056;QD=21.03;ReadPosRankSum=1.705;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2767,312,0 chrVI 28033 . T G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.480;QD=19.37;ReadPosRankSum=1.679;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2570,294,0 chrVI 28051 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.12;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2758,312,0 chrVI 28146 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.390;QD=21.99;ReadPosRankSum=0.220;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3155,354,0 chrVI 28283 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.1179;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.90;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3143,351,0 chrVI 28318 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7495;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.38;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3483,381,0 chrVI 28542 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=2.962;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=23.10;ReadPosRankSum=2.394;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4089,456,0 chrVI 28662 . T A 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=3.491;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.287;QD=23.96;ReadPosRankSum=1.633;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5055,543,0 chrVI 28916 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=163;Dels=0.00;FS=2.926;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.372;QD=21.90;ReadPosRankSum=2.389;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3570,402,0 chrVI 29620 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4482,495,0 chrVI 29691 . G T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.16;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3745,411,0 chrVI 29732 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.232;QD=21.52;ReadPosRankSum=1.666;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3378,384,0 chrVI 29751 . T A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.39;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3851,417,0 chrVI 29907 . G T 2877 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.1772;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=24.80;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2910,315,0 chrVI 30085 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=61;Dels=0.00;FS=29.655;HaplotypeScore=4.1534;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=-2.491;QD=15.67;ReadPosRankSum=1.734;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:4,57:61:99:989,111,0 chrVI 30187 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.26;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1903,225,0 chrVI 30312 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.970;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;MQRankSum=-0.898;QD=19.99;ReadPosRankSum=2.405;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2252,258,0 chrVI 30322 . G C 2169 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=18.38;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2202,243,0 chrVI 30348 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;MQRankSum=-1.181;QD=16.05;ReadPosRankSum=1.680;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2152,246,0 chrVI 30357 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=15.37;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2139,246,0 chrVI 30382 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=15.09;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2281,249,0 chrVI 30393 . G T 2142 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=14.98;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2175,237,0 chrVI 30510 . G C 2463 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.02;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2496,279,0 chrVI 30544 . A T 2522 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=22.32;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2555,294,0 chrVI 30616 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=110;Dels=0.00;FS=9.791;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.886;QD=22.30;ReadPosRankSum=2.404;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:2,105:110:99:2486,279,0 chrVI 30834 . T A 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.046;QD=23.01;ReadPosRankSum=1.607;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2587,291,0 chrVI 30954 . T A 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=115;Dels=0.02;FS=3.810;HaplotypeScore=18.1517;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.138;QD=19.81;ReadPosRankSum=1.701;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2311,249,0 chrVI 31117 . T A 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.30;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1951,222,0 chrVI 31360 . G T 1396 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.12;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1429,156,0 chrVI 31448 . G C 1852 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.79;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1885,204,0 chrVI 31484 . G C 1687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=14.18;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1720,192,0 chrVI 31506 . A C 1924 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.8184;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=14.36;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1957,216,0 chrVI 31522 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=11.69;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1681,195,0 chrVI 31531 . C G 1616 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=128.5456;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=10.92;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1649,180,0 chrVI 31596 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=15.12;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1485,162,0 chrVI 31613 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=89.7141;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=16.34;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1830,207,0 chrVI 31648 . A G 2298 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=1;QD=17.28;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2331,261,0 chrVI 31669 . T G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=7.092;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=-1.605;QD=19.16;ReadPosRankSum=2.404;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3099,345,0 chrVI 31855 . T A 2889 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.72;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2922,321,0 chrVI 31946 . A C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;MQRankSum=-1.021;QD=22.53;ReadPosRankSum=1.709;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3424,387,0 chrVI 31980 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;QD=20.61;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2959,336,0 chrVI 32162 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2183,234,0 chrVI 32204 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2215,240,0 chrVI 32259 . T G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=103;Dels=0.00;FS=6.596;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.591;QD=22.32;ReadPosRankSum=2.401;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2332,258,0 chrVI 32438 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=16.4119;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.36;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1777,201,0 chrVI 32484 . C G 880 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=22.00;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:913,102,0 chrVI 32508 . T C 513 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=19.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:546,60,0 chrVI 32754 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=1.91;SB=-5.398e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:74,9,0 chrVI 32800 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=18.56;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1369,153,0 chrVI 32818 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=21.51;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1775,195,0 chrVI 32886 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.18;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1297,141,0 chrVI 32918 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=20.69;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1088,120,0 chrVI 32931 . T G 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=0.333;QD=18.62;ReadPosRankSum=1.333;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1001,117,0 chrVI 32955 . A C 1015 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=15.62;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1048,120,0 chrVI 32964 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=18.15;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1213,132,0 chrVI 33008 . A T 1674 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.81;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1707,195,0 chrVI 33158 . T A 1734 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=20.16;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1767,192,0 chrVI 33177 . C A 1526 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=17.95;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1559,174,0 chrVI 33187 . A C 1443 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=17.39;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1476,171,0 chrVI 33222 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.76;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1910,213,0 chrVI 33267 . T A 2365 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=24.38;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2398,255,0 chrVI 33328 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.62;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2013,225,0 chrVI 33340 . T C 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4258;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.377;QD=19.07;ReadPosRankSum=1.657;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1787,204,0 chrVI 33496 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.59;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2235,240,0 chrVI 33689 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.48;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2824,309,0 chrVI 33797 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=132;Dels=0.00;FS=2.923;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.736;QD=22.05;ReadPosRankSum=2.394;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2944,336,0 chrVI 33886 . A C 4896.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.00;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4896,561,0 chrVI 34508 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.74;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2233,249,0 chrVI 34741 . T G 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.875;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=19.9084;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.589;QD=21.86;ReadPosRankSum=-1.125;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2153,246,0 chrVI 34775 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.58;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2215,255,0 chrVI 34780 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.95;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2358,258,0 chrVI 34881 . T C 2533 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.892;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-1.389;QD=21.84;ReadPosRankSum=2.407;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2566,282,0 chrVI 34884 . G A 2415 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=21.00;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2448,267,0 chrVI 34886 . A G 2295 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.924;HaplotypeScore=5.2857;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-0.239;QD=19.45;ReadPosRankSum=1.643;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2328,270,0 chrVI 34967 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.39;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3604,405,0 chrVI 35042 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=203;Dels=0.00;FS=2.561;HaplotypeScore=6.6383;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=1.076;QD=19.66;ReadPosRankSum=2.377;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:3990,456,0 chrVI 35048 . T G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=210;Dels=0.00;FS=2.572;HaplotypeScore=11.3015;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.589;QD=19.45;ReadPosRankSum=2.928;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4084,471,0 chrVI 35114 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=194;Dels=0.00;FS=2.891;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;MQRankSum=1.203;QD=17.75;ReadPosRankSum=2.411;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3443,372,0 chrVI 35118 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.694;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-0.601;QD=17.25;ReadPosRankSum=1.680;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3432,384,0 chrVI 35261 . T C 5706.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.53;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5706,651,0 chrVI 35310 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=20.46;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4623,504,0 chrVI 35313 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.39;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,215:221:99:4286,468,0 chrVI 35368 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.695;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.384;QD=17.21;ReadPosRankSum=1.695;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3216,372,0 chrVI 35370 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.37;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3454,378,0 chrVI 35385 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.5425;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=18.25;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3431,384,0 chrVI 35514 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=190;Dels=0.00;FS=5.788;HaplotypeScore=17.3621;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.133;QD=20.24;ReadPosRankSum=2.899;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3845,423,0 chrVI 35586 . G A 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.104;DP=160;Dels=0.00;FS=3.176;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-0.693;QD=15.93;ReadPosRankSum=1.624;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2582,263,0 chrVI 35589 . A G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=145;Dels=0.00;FS=9.216;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=1.149;QD=16.70;ReadPosRankSum=3.313;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:2455,285,0 chrVI 35604 . A C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.027;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.008;QD=17.12;ReadPosRankSum=2.403;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2738,303,0 chrVI 35661 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.82;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3518,378,0 chrVI 35729 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=24.16;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3334,357,0 chrVI 35794 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.89;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2337,258,0 chrVI 35807 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=126;Dels=0.00;FS=8.189;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.187;QD=18.47;ReadPosRankSum=2.410;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2360,264,0 chrVI 35855 . G C 2245 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.19;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2278,255,0 chrVI 35905 . A C 2011 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=17.49;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2044,234,0 chrVI 35915 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=18.06;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2038,219,0 chrVI 35920 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=17.56;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2017,216,0 chrVI 35940 . A T 2010 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.79;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2043,222,0 chrVI 36181 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.548;QD=23.31;ReadPosRankSum=1.671;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2714,297,0 chrVI 36247 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.14;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3355,363,0 chrVI 36301 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.44;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4172,459,0 chrVI 36358 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.35;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3642,411,0 chrVI 36394 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.35;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3503,378,0 chrVI 36423 . T G 3162 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.67;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3195,366,0 chrVI 36462 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8528;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.22;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3046,333,0 chrVI 36552 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.121;QD=21.64;ReadPosRankSum=1.698;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2262,255,0 chrVI 36642 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.37;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1465,159,0 chrVI 36795 . A T 1887 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.01;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1920,216,0 chrVI 36857 . G C 2059 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.94;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2092,237,0 chrVI 36925 . G T 2431 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4022;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.15;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2464,288,0 chrVI 37000 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.88;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3343,375,0 chrVI 37039 . G C 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.2359;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.52;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3118,354,0 chrVI 37159 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.33;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2870,324,0 chrVI 37497 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1773,198,0 chrVI 37537 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2510,279,0 chrVI 37670 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=115;Dels=0.00;FS=12.405;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.009;QD=21.74;ReadPosRankSum=2.939;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2533,288,0 chrVI 37852 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=24.39;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3609,393,0 chrVI 37951 . A T 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.854;QD=20.45;ReadPosRankSum=1.708;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3019,339,0 chrVI 38005 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.42;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3318,357,0 chrVI 38029 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=18.61;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2564,294,0 chrVI 38035 . C T 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.046;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=0.157;QD=18.75;ReadPosRankSum=1.470;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2508,270,0 chrVI 38041 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=18.27;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2371,270,0 chrVI 38588 . G T 2265 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2298,246,0 chrVI 38681 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1949,219,0 chrVI 38909 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.01;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1754,201,0 chrVI 38918 . T C 1843 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.82;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1876,213,0 chrVI 39269 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.02;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1735,195,0 chrVI 39419 . G T 2149 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.36;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2182,237,0 chrVI 39488 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.28;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2679,291,0 chrVI 39521 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3258,354,0 chrVI 39566 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=3.042;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.286;QD=22.75;ReadPosRankSum=2.375;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3013,339,0 chrVI 39674 . C G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.61;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3392,384,0 chrVI 39808 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.66;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3455,381,0 chrVI 39950 . C A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4191,450,0 chrVI 40027 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.33;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3041,348,0 chrVI 40189 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=22.70;ReadPosRankSum=2.366;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2712,300,0 chrVI 40232 . A C 2059 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2092,231,0 chrVI 40338 . A T 2487 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2520,276,0 chrVI 40564 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.49;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3333,369,0 chrVI 40603 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.59;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3272,366,0 chrVI 40630 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=150;Dels=0.00;FS=3.573;HaplotypeScore=10.5098;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.351;QD=17.78;ReadPosRankSum=1.685;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2700,312,0 chrVI 40771 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6106;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.42;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3363,360,0 chrVI 40841 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.48;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2596,285,0 chrVI 41032 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.54;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2622,282,0 chrVI 41221 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.35;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2368,261,0 chrVI 41296 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3341,363,0 chrVI 41461 . A C 3797.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3797,429,0 chrVI 41500 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.59;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4176,462,0 chrVI 41563 . G T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.08;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3854,420,0 chrVI 41688 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.56;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3120,342,0 chrVI 41722 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.19;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2653,294,0 chrVI 41791 . A G 2119 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.26;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2152,240,0 chrVI 41842 . T C 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.98;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2605,291,0 chrVI 41899 . T G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.699;QD=20.66;ReadPosRankSum=1.666;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2182,252,0 chrVI 41939 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.17;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2049,222,0 chrVI 42070 . C G 2657 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.33;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2690,312,0 chrVI 42167 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.51;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3048,327,0 chrVI 42240 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.304;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.469;QD=21.81;ReadPosRankSum=1.700;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2389,273,0 chrVI 42346 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=127;Dels=0.00;FS=5.276;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.703;QD=18.73;ReadPosRankSum=3.360;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:4,122:127:99:2412,282,0 chrVI 42349 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.27;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2466,270,0 chrVI 42633 . G A 824 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:96:857,96,0 chrVI 42684 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.12;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1432,162,0 chrVI 42772 . T A 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.039;QD=22.73;ReadPosRankSum=1.693;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2033,234,0 chrVI 42955 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.61;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3306,366,0 chrVI 42970 . T G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=6.397;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.221;QD=18.98;ReadPosRankSum=2.418;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:2994,339,0 chrVI 42992 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.87;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3402,366,0 chrVI 43072 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.698;QD=23.30;ReadPosRankSum=2.325;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2782,306,0 chrVI 43129 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.84;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3354,369,0 chrVI 43169 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.96;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3307,357,0 chrVI 43198 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.5869;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.708;QD=21.82;ReadPosRankSum=1.254;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3219,357,0 chrVI 43492 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.90;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2918,321,0 chrVI 43673 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2521,273,0 chrVI 43907 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.25;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3103,345,0 chrVI 44192 . A G 2981 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.5752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3014,342,0 chrVI 44552 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.690;QD=20.91;ReadPosRankSum=1.708;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3044,339,0 chrVI 44748 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=21.33;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4160,462,0 chrVI 44754 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=20.57;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4113,441,0 chrVI 44763 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=210;Dels=0.00;FS=6.467;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.386;QD=18.56;ReadPosRankSum=2.403;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:3898,444,0 chrVI 44772 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.25;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3657,411,0 chrVI 45217 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.844;QD=22.73;ReadPosRankSum=1.697;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4433,492,0 chrVI 45282 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.98;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4004,462,0 chrVI 45764 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=3.012;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.268;QD=22.96;ReadPosRankSum=2.371;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3605,405,0 chrVI 45822 . C A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.91;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3409,381,0 chrVI 45896 . C A 3181 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.88;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3214,348,0 chrVI 45929 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.1398;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.661;QD=16.94;ReadPosRankSum=3.324;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:4,164:170:99:2912,327,0 chrVI 45941 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.206;QD=18.25;ReadPosRankSum=1.691;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3136,351,0 chrVI 46010 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=201;Dels=0.00;FS=5.537;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.040;QD=21.19;ReadPosRankSum=2.965;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4260,492,0 chrVI 46185 . T C 5365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=236;Dels=0.00;FS=6.188;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.151;QD=22.73;ReadPosRankSum=2.398;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5365,612,0 chrVI 46215 . A G 4835.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.88;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4835,531,0 chrVI 46302 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4090,444,0 chrVI 46380 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=2.704;HaplotypeScore=8.9302;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=2.365;QD=22.47;ReadPosRankSum=2.141;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3932,441,0 chrVI 46872 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.04;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3916,420,0 chrVI 46902 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.275;QD=22.05;ReadPosRankSum=-0.381;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3528,405,0 chrVI 47103 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.31;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3647,408,0 chrVI 47317 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.1968;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.82;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3731,420,0 chrVI 47484 . G C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.43;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,163:168:99:3769,435,0 chrVI 47620 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.6762;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.52;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4536,504,0 chrVI 47625 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.1870;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.45;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4581,504,0 chrVI 47639 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.88;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4059,468,0 chrVI 48049 . G C 5270.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.2642;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.60;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:5270,603,0 chrVI 48220 . G A 5484.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.16;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5484,592,0 chrVI 48275 . T G 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=236;Dels=0.00;FS=9.370;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.979;QD=20.38;ReadPosRankSum=2.962;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:3,232:236:99:4809,552,0 chrVI 48282 . C T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=22.22;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5177,561,0 chrVI 48454 . C T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.19;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4910,531,0 chrVI 48469 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.69;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4186,471,0 chrVI 48535 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3010;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.73;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3387,396,0 chrVI 48548 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=6.416;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.791;QD=17.87;ReadPosRankSum=1.713;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3324,390,0 chrVI 48613 . A G 3064 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9739;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.70;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3097,351,0 chrVI 48712 . T C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.083;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.837;QD=23.50;ReadPosRankSum=1.674;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2853,318,0 chrVI 48771 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.52;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2037,219,0 chrVI 48940 . G T 1378 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1411,159,0 chrVI 49181 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.59;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2883,336,0 chrVI 49201 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.22;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2516,288,0 chrVI 49360 . T A 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=2.886;HaplotypeScore=12.3315;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.732;QD=22.34;ReadPosRankSum=2.380;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4759,519,0 chrVI 49381 . T C 5029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3449;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.349;QD=21.22;ReadPosRankSum=1.717;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5029,576,0 chrVI 49453 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.3481;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.09;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5149,570,0 chrVI 49819 . T C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.515;QD=21.24;ReadPosRankSum=1.638;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2391,267,0 chrVI 49826 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.45;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2500,267,0 chrVI 50137 . G A 5497.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.1229;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5497,603,0 chrVI 50320 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.763;QD=21.35;ReadPosRankSum=1.714;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4121,471,0 chrVI 50414 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=7.242;HaplotypeScore=10.2958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.150;QD=23.64;ReadPosRankSum=2.407;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4089,465,0 chrVI 50685 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=7.460;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=22.40;ReadPosRankSum=2.365;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3943,432,0 chrVI 50825 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3569,378,0 chrVI 51009 . T A 2041 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.01;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2074,228,0 chrVI 51067 . A G 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.93;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2234,258,0 chrVI 51257 . A G 2518 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.45;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2551,285,0 chrVI 51333 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.39;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2133,240,0 chrVI 51343 . A G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=8.421;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.146;QD=20.37;ReadPosRankSum=2.401;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2111,243,0 chrVI 51603 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.18;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3023,345,0 chrVI 51748 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.35;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3336,357,0 chrVI 51781 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=2.807;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.472;QD=22.63;ReadPosRankSum=2.420;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3711,426,0 chrVI 51970 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.637;DP=179;Dels=0.00;FS=16.094;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.418;QD=22.26;ReadPosRankSum=4.679;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:8,170:179:99:3985,447,0 chrVI 52024 . A T 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.295;QD=21.54;ReadPosRankSum=1.709;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3200,372,0 chrVI 52423 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4645,516,0 chrVI 52550 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.3586;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.52;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3788,420,0 chrVI 52648 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3084,357,0 chrVI 52738 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.67;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2776,312,0 chrVI 52838 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1169,126,0 chrVI 53035 . C T 221.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-1.148e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:254,27,0 chrVI 53077 . T A 622 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.21;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:655,72,0 chrVI 53989 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3619,402,0 chrVI 54487 . T A 1153 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.8923;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=14.97;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1186,129,0 chrVI 54858 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.09;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1903,216,0 chrVI 54904 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.665;QD=20.55;ReadPosRankSum=2.385;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1595,180,0 chrVI 54932 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.82;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1386,156,0 chrVI 55127 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.67;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1273,144,0 chrVI 55132 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.77;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1279,144,0 chrVI 55480 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:3655,420,0 chrVI 55594 . C A 6287.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=23.0004;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.98;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6287,684,0 chrVI 55864 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.3682;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.252;QD=19.21;ReadPosRankSum=1.715;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3958,453,0 chrVI 55876 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.51;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3862,429,0 chrVI 56298 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.71;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3115,336,0 chrVI 56854 . G A 5658.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.6220;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.54;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5658,615,0 chrVI 57460 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.248;DP=190;Dels=0.00;FS=5.251;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.245;QD=21.74;ReadPosRankSum=3.414;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:4131,459,0 chrVI 57672 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.449;QD=20.01;ReadPosRankSum=1.433;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1654,186,0 chrVI 57870 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrVI 58170 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.45;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1560,177,0 chrVI 58233 . G T 1323 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.75;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1356,150,0 chrVI 58319 . C G 1913 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.72;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1946,219,0 chrVI 58327 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.25;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1767,201,0 chrVI 58653 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.71;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2190,249,0 chrVI 58715 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.17;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2848,324,0 chrVI 58949 . A G 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=135;Dels=0.00;FS=5.772;HaplotypeScore=7.4906;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.090;QD=16.44;ReadPosRankSum=2.948;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:2253,264,0 chrVI 58952 . A G 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=132;Dels=0.00;FS=3.007;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.773;QD=16.05;ReadPosRankSum=2.412;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2152,249,0 chrVI 58994 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=140;Dels=0.00;FS=6.099;HaplotypeScore=9.8445;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.123;QD=18.31;ReadPosRankSum=2.950;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2597,297,0 chrVI 59811 . C A 1350 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1383,150,0 chrVI 59951 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.19;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1772,198,0 chrVI 60218 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.10;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2817,306,0 chrVI 60234 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.30;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2843,309,0 chrVI 61110 . T A 2506 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2539,291,0 chrVI 61214 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.87;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2278,249,0 chrVI 61226 . T C 2307 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.06;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2340,264,0 chrVI 61419 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.5455;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.75;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3595,390,0 chrVI 61610 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.97;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4480,483,0 chrVI 61686 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.66;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4258,456,0 chrVI 61694 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.31;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3794,435,0 chrVI 61808 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3734,423,0 chrVI 62743 . T C 740 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.97;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:90:773,90,0 chrVI 62831 . C T 943 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:976,108,0 chrVI 62852 . A G 726 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.051;QD=18.15;ReadPosRankSum=2.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,37:40:84:759,84,0 chrVI 62990 . A G 735 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:32:87:768,87,0 chrVI 63014 . C T 791 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:90:824,90,0 chrVI 63394 . C G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3377,390,0 chrVI 64052 . T G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=108;Dels=0.00;FS=10.943;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.493;QD=18.88;ReadPosRankSum=2.404;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2072,231,0 chrVI 64249 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.60;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1475,162,0 chrVI 65504 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3374,393,0 chrVI 65802 . T G 3079 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.99;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3112,348,0 chrVI 66782 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.37;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3270,357,0 chrVI 67184 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=149;Dels=0.01;FS=2.959;HaplotypeScore=22.2997;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.338;QD=19.14;ReadPosRankSum=2.382;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2885,324,0 chrVI 69778 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.224;QD=22.01;ReadPosRankSum=1.686;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3301,384,0 chrVI 69817 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=3.030;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=21.59;ReadPosRankSum=2.424;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4189,477,0 chrVI 70009 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.80;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3248,354,0 chrVI 70057 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.67;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3132,336,0 chrVI 70279 . A T 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=3.038;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.205;QD=20.60;ReadPosRankSum=2.377;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2134,234,0 chrVI 70295 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.74;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1825,204,0 chrVI 70309 . T C 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=6.697;HaplotypeScore=5.7147;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.054;QD=17.25;ReadPosRankSum=2.363;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2017,234,0 chrVI 70348 . T A 2850 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.43;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2883,312,0 chrVI 70408 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.89;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2561,294,0 chrVI 70639 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.76;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2423,264,0 chrVI 70822 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.30;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2137,243,0 chrVI 70827 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5226;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.83;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2085,222,0 chrVI 70891 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.46;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1997,216,0 chrVI 70957 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.73;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2293,255,0 chrVI 71011 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.95;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2275,261,0 chrVI 71083 . A G 3116 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.42;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3149,369,0 chrVI 71197 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.3843;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.33;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3710,414,0 chrVI 71471 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.47;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4764,525,0 chrVI 71500 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.93;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3521,396,0 chrVI 71518 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.906;QD=19.28;ReadPosRankSum=1.692;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3316,375,0 chrVI 71932 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.22;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2431,276,0 chrVI 71950 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.97;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1911,210,0 chrVI 71959 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.66;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1920,207,0 chrVI 72261 . T A 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.918;QD=23.81;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3953,426,0 chrVI 72514 . C G 4644.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.4835;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.80;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4644,522,0 chrVI 72603 . T A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.62;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4343,471,0 chrVI 72607 . T G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.09;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:3964,459,0 chrVI 72636 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.292;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.376;QD=18.83;ReadPosRankSum=1.673;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3296,387,0 chrVI 72876 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9892;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.75;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:2921,312,0 chrVI 72886 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.20;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2894,315,0 chrVI 73033 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=141;Dels=0.00;FS=10.404;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.064;QD=18.63;ReadPosRankSum=2.865;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2660,303,0 chrVI 73237 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.12;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1321,150,0 chrVI 73357 . G A 588 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=10.5510;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=15.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:621,72,0 chrVI 73540 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.57;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2079,228,0 chrVI 73633 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=184;Dels=0.00;FS=3.106;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.377;QD=23.07;ReadPosRankSum=1.619;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4244,471,0 chrVI 73933 . G A 7381.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=16.9538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.50;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,359:360:99:7381,857,0 chrVI 73981 . T C 7431.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=374;Dels=0.00;FS=12.156;HaplotypeScore=19.4695;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.603;QD=19.87;ReadPosRankSum=3.760;SB=-4.558e+03 GT:AD:DP:GQ:PL 1/1:5,368:374:99:7431,843,0 chrVI 74035 . G A 7374.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=12.9636;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.05;SB=-4.337e+03 GT:AD:DP:GQ:PL 1/1:0,384:387:99:7374,819,0 chrVI 74044 . A G 7381.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.775;DP=413;Dels=0.00;FS=11.013;HaplotypeScore=14.2350;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.858;QD=17.87;ReadPosRankSum=3.741;SB=-4.281e+03 GT:AD:DP:GQ:PL 1/1:5,407:413:99:7381,846,0 chrVI 74155 . A G 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=289;Dels=0.00;FS=5.437;HaplotypeScore=25.3111;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.367;QD=21.40;ReadPosRankSum=2.934;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:3,284:289:99:6186,702,0 chrVI 74817 . G C 1320 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=16.71;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1353,153,0 chrVI 74858 . A G 1043 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=12.88;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1076,123,0 chrVI 74862 . A G 1082 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=13.04;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1115,126,0 chrVI 74864 . A G 1123 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=13.53;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1156,132,0 chrVI 75052 . G A 724 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=13.66;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:757,84,0 chrVI 75054 . A G 713 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=53;Dels=0.00;FS=16.215;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;MQRankSum=-1.328;QD=13.45;ReadPosRankSum=2.868;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:3,50:53:84:746,84,0 chrVI 75055 . A T 741 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=14.25;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:87:774,87,0 chrVI 75101 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=10.79;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:1188,135,0 chrVI 75322 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.09;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3689,414,0 chrVI 75397 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.094;DP=201;Dels=0.00;FS=8.849;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-1.174;QD=19.77;ReadPosRankSum=3.416;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:3974,447,0 chrVI 75434 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=17.92;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3924,423,0 chrVI 75446 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=16.56;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:3610,393,0 chrVI 75453 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=15.26;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3312,366,0 chrVI 75463 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=14.59;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3023,342,0 chrVI 75514 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.06;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3527,405,0 chrVI 76018 . G A 926 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=164.3064;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=13.42;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:959,111,0 chrVI 76126 . T C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=6.871;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.476;QD=20.60;ReadPosRankSum=2.359;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1702,198,0 chrVI 76175 . T A 27.15 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.999;DP=100;Dels=0.00;FS=1.473;HaplotypeScore=85.9912;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=1.351;QD=0.27;ReadPosRankSum=4.134;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:7,93:100:12:57,0,12 chrVI 76268 . G T 2199 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=23.65;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2232,243,0 chrVI 76442 . G A 1436 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1469,165,0 chrVI 76481 . G A 587 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=15.86;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:69:620,69,0 chrVI 76487 . T C 431 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DP=28;Dels=0.00;FS=25.775;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-1.740;QD=15.39;ReadPosRankSum=-0.045;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:2,26:28:51:464,51,0 chrVI 76495 . A C 301.98 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DP=23;Dels=0.00;FS=32.482;HaplotypeScore=6.5338;MLEAC=1;MLEAF=0.500;MQ=32.88;MQ0=0;MQRankSum=-2.237;QD=13.13;ReadPosRankSum=-1.050;SB=-3.988e+00 GT:AD:DP:GQ:PL 0/1:3,20:23:3:331,0,3 chrVI 76499 . A C 229.09 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;DP=24;Dels=0.00;FS=32.048;HaplotypeScore=3.8340;MLEAC=1;MLEAF=0.500;MQ=37.63;MQ0=0;MQRankSum=-1.848;QD=9.55;ReadPosRankSum=1.670;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:9,15:24:14:259,0,14 chrVI 76503 . T C 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=12;Dels=0.00;FS=26.946;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=49.50;MQ0=0;MQRankSum=-2.637;QD=2.42;ReadPosRankSum=0.600;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:8,4:12:59:59,0,107 chrVI 76505 . T A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DP=15;Dels=0.00;FS=31.351;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-2.938;QD=1.87;ReadPosRankSum=0.065;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:58:58,0,118 chrVI 76507 . T A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DP=20;Dels=0.00;FS=36.853;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-3.071;QD=0.71;ReadPosRankSum=0.236;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:16,4:20:44:44,0,160 chrVI 76682 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.10;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1889,213,0 chrVI 76783 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.120;HaplotypeScore=12.2304;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.866;QD=22.39;ReadPosRankSum=1.710;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3582,396,0 chrVI 76851 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.45;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3547,393,0 chrVI 76860 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.78;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3372,360,0 chrVI 76866 . C T 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=20.82;ReadPosRankSum=1.664;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3197,333,0 chrVI 76914 . T C 3101 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.67;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3134,348,0 chrVI 76992 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.46;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3600,414,0 chrVI 77004 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=18.19;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3510,378,0 chrVI 77007 . T G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.400;QD=16.78;ReadPosRankSum=1.714;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3272,366,0 chrVI 77340 . G A 5394.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.7435;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;QD=21.32;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5394,591,0 chrVI 77928 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2443,273,0 chrVI 77976 . G A 1057 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1090,117,0 chrVI 78202 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3710,435,0 chrVI 78244 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4407,513,0 chrVI 78307 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.2682;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.273;QD=18.26;ReadPosRankSum=1.648;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:4510,507,0 chrVI 78568 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=20.1067;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.051;QD=21.54;ReadPosRankSum=1.718;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5169,588,0 chrVI 78613 . A T 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.644;QD=22.40;ReadPosRankSum=1.715;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4636,501,0 chrVI 78750 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3597,393,0 chrVI 78805 . G T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.50;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3455,381,0 chrVI 78930 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=3.979;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.369;QD=23.87;ReadPosRankSum=1.710;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3724,411,0 chrVI 79343 . G C 2499 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.72;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2532,282,0 chrVI 79488 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.98;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2758,309,0 chrVI 79515 . A G 2758 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.38;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2791,312,0 chrVI 79638 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3324,360,0 chrVI 79755 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.55;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2889,324,0 chrVI 79758 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=3.029;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.164;QD=18.53;ReadPosRankSum=2.371;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2961,321,0 chrVI 79809 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=166;Dels=0.00;FS=10.273;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.709;QD=18.15;ReadPosRankSum=2.849;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3046,351,0 chrVI 80049 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.11;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3315,366,0 chrVI 80160 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.32;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2691,300,0 chrVI 80232 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2435,267,0 chrVI 80328 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1865,201,0 chrVI 80524 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.34;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2764,315,0 chrVI 80683 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.58;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3416,372,0 chrVI 80830 . A T 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.406;QD=21.15;ReadPosRankSum=1.703;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2508,282,0 chrVI 80860 . G C 2492 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.30;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2525,288,0 chrVI 81019 . C T 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.408;QD=23.98;ReadPosRankSum=0.136;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2479,270,0 chrVI 81060 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.301;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.452;QD=22.96;ReadPosRankSum=-0.301;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2145,224,0 chrVI 81445 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.42;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2353,267,0 chrVI 81673 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=21.35;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2296,264,0 chrVI 81686 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.97;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2270,255,0 chrVI 81803 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.08;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3804,408,0 chrVI 81869 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=20.69;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2847,306,0 chrVI 81877 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=132;Dels=0.00;FS=9.647;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.254;QD=17.64;ReadPosRankSum=2.931;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2361,270,0 chrVI 81880 . C G 2337 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=18.12;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2370,270,0 chrVI 81945 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=3.148;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.299;QD=19.82;ReadPosRankSum=1.705;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2609,291,0 chrVI 82265 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.49;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3739,423,0 chrVI 82679 . T A 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.196;QD=22.08;ReadPosRankSum=1.576;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2396,261,0 chrVI 82990 . T G 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.635;QD=22.55;ReadPosRankSum=1.617;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2762,309,0 chrVI 83044 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.796;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.458;QD=22.04;ReadPosRankSum=1.657;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3119,363,0 chrVI 83101 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.56;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3392,360,0 chrVI 83105 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.47;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3290,372,0 chrVI 83181 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7874;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.35;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3501,387,0 chrVI 83323 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.11;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3094,348,0 chrVI 83368 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.58;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3952,423,0 chrVI 83410 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4524,516,0 chrVI 83560 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=166;Dels=0.00;FS=12.545;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.327;QD=22.54;ReadPosRankSum=2.824;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3742,414,0 chrVI 83611 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=2.666;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.541;QD=22.88;ReadPosRankSum=2.348;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4416,501,0 chrVI 83687 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.32;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2621,285,0 chrVI 83894 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.01;FS=2.811;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.232;QD=19.00;ReadPosRankSum=2.379;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1363,150,0 chrVI 83900 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.36;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1388,156,0 chrVI 84102 . C G 1971 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7437;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.19;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2004,228,0 chrVI 84193 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.22;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2796,312,0 chrVI 84235 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.188;QD=24.23;ReadPosRankSum=1.683;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3465,378,0 chrVI 84382 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.83;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2866,324,0 chrVI 84403 . G T 3041 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.86;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3074,333,0 chrVI 84512 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=2.812;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.096;QD=23.09;ReadPosRankSum=2.407;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2688,297,0 chrVI 84689 . T A 2729 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2762,303,0 chrVI 84736 . A T 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.822;QD=21.36;ReadPosRankSum=1.703;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2554,285,0 chrVI 85406 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.1800;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.378;QD=22.34;ReadPosRankSum=1.596;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2893,324,0 chrVI 85688 . G C 3916.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.64;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3916,438,0 chrVI 85718 . T A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.0139;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.64;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3357,369,0 chrVI 85912 . C G 2075 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=19.21;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2108,240,0 chrVI 86322 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.62;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2671,300,0 chrVI 86374 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.88;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2641,297,0 chrVI 86446 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.708;QD=20.80;ReadPosRankSum=1.683;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3007,345,0 chrVI 86452 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.84;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3134,336,0 chrVI 86499 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.54;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2445,267,0 chrVI 86631 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.10;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3029,327,0 chrVI 86721 . G T 2851 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.81;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2884,309,0 chrVI 86925 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=6.925;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.709;QD=22.92;ReadPosRankSum=2.324;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3196,354,0 chrVI 87106 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.90;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3011,342,0 chrVI 87400 . C T 2284 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.96;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2317,252,0 chrVI 87438 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7976;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.75;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2240,249,0 chrVI 87634 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.22;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1752,192,0 chrVI 87650 . T C 1474 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.14;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1507,171,0 chrVI 88006 . T C 650 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=4.92;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:75:683,75,0 chrVI 88009 . T C 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.627;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-1.256;QD=5.25;ReadPosRankSum=2.397;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:84:768,84,0 chrVI 88398 . C A 1910 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1943,210,0 chrVI 88711 . A T 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.815;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.346;QD=21.30;ReadPosRankSum=1.652;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2802,303,0 chrVI 88726 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.88;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2726,297,0 chrVI 88828 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=4.374;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.467;QD=21.87;ReadPosRankSum=1.670;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3652,423,0 chrVI 88843 . T A 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=1.408;QD=21.60;ReadPosRankSum=1.611;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3694,399,0 chrVI 88861 . G T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.92;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3286,357,0 chrVI 89086 . A T 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7551;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.477;QD=16.38;ReadPosRankSum=1.709;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2473,270,0 chrVI 89089 . T A 2319 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=16.45;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2352,258,0 chrVI 89110 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=15.46;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2383,258,0 chrVI 89149 . G C 2300 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.74;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:2333,267,0 chrVI 89173 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.17;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2377,267,0 chrVI 89605 . T A 1917 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.07;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1950,216,0 chrVI 89727 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2126,234,0 chrVI 90217 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.594;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.401;QD=21.94;ReadPosRankSum=1.709;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3335,378,0 chrVI 90244 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=168;Dels=0.00;FS=6.092;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.503;QD=18.02;ReadPosRankSum=2.862;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3061,351,0 chrVI 90257 . T A 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.464;QD=19.11;ReadPosRankSum=2.273;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3224,345,0 chrVI 90286 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8102;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=15.55;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2755,318,0 chrVI 90659 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3918,435,0 chrVI 90755 . T C 2562 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.33;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2595,294,0 chrVI 90767 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.57;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2812,300,0 chrVI 90772 . T G 2571 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.90;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2604,297,0 chrVI 90851 . C A 2998 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.72;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3031,336,0 chrVI 91116 . A G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=126;Dels=0.00;FS=7.668;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.194;QD=23.16;ReadPosRankSum=2.332;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2951,327,0 chrVI 91475 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.5321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4050,435,0 chrVI 91573 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.25;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2707,291,0 chrVI 91902 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.17;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2574,276,0 chrVI 92092 . G T 2384 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.37;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2417,270,0 chrVI 92105 . A G 2300 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.33;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2333,258,0 chrVI 92119 . A G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3229;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=1.242;QD=20.59;ReadPosRankSum=1.634;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2216,249,0 chrVI 92208 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.261;QD=21.46;ReadPosRankSum=1.701;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2480,273,0 chrVI 92586 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.85;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2021,225,0 chrVI 94351 . C G 3835.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.53;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3835,426,0 chrVI 94477 . A G 2218 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.64;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2251,258,0 chrVI 94480 . G A 2272 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.76;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2305,252,0 chrVI 94481 . T C 2246 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=6.998;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.615;QD=19.03;ReadPosRankSum=2.304;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2279,255,0 chrVI 94726 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.48;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3265,357,0 chrVI 94729 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.67;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3207,360,0 chrVI 94981 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.29;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1042,117,0 chrVI 95387 . G C 1908 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=23.85;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1941,210,0 chrVI 95585 . T A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.07;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4245,492,0 chrVI 95632 . G A 4788.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.36;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4788,514,0 chrVI 95849 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8476;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.19;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3473,390,0 chrVI 96038 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;DP=15;Dels=0.00;FS=3.424;HaplotypeScore=7.1000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.322;QD=0.80;ReadPosRankSum=-2.256;SB=-2.125e+01 GT:AD:DP:GQ:PL 1/1:2,10:15:6:43,6,0 chrVI 96502 . T C 2115 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2148,246,0 chrVI 96678 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;QD=23.15;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2603,291,0 chrVI 96802 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.25;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2625,282,0 chrVI 96814 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=16.42;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2545,285,0 chrVI 96832 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.02;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2970,336,0 chrVI 96955 . G T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.98;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3881,429,0 chrVI 96991 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.52;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4189,465,0 chrVI 97103 . G C 5373.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.11;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:5373,600,0 chrVI 97235 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.9840;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.23;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4330,498,0 chrVI 97308 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=17.45;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3280,357,0 chrVI 97737 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1194,135,0 chrVI 97944 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.89;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2756,297,0 chrVI 98071 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.13;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2932,327,0 chrVI 98138 . G T 3102 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.16;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3135,342,0 chrVI 98152 . A T 3091 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.92;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3124,342,0 chrVI 98252 . G C 2768 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.46;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2801,312,0 chrVI 98281 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.21;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2720,309,0 chrVI 98282 . C A 2655 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.76;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2688,303,0 chrVI 98330 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.55;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2640,285,0 chrVI 98578 . A T 2569 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.14;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2602,288,0 chrVI 98654 . C G 1366 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=15.35;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1399,159,0 chrVI 98744 . T C 708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;DP=92;Dels=0.00;FS=2.289;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;MQRankSum=-0.242;QD=7.70;ReadPosRankSum=2.550;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:3,89:92:84:741,84,0 chrVI 98747 . A T 667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;MQRankSum=0.055;QD=7.02;ReadPosRankSum=1.696;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:75:700,75,0 chrVI 98785 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=10.38;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:915,99,0 chrVI 98835 . T A 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.789;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.181;QD=18.87;ReadPosRankSum=1.629;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1297,141,0 chrVI 98867 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=22.09;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1513,162,0 chrVI 99817 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.8283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3954,432,0 chrVI 100276 . G T 2529 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.99;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2562,297,0 chrVI 100367 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;MQRankSum=-0.948;QD=20.70;ReadPosRankSum=1.699;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2227,246,0 chrVI 100382 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=147.8237;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=20.49;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1980,213,0 chrVI 100428 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.10;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1809,204,0 chrVI 100449 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.38;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2021,228,0 chrVI 100481 . C G 2623 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.33;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2656,309,0 chrVI 100526 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=15.24;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1907,219,0 chrVI 100551 . C G 1172 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=11.49;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1205,138,0 chrVI 100558 . A G 916 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=6.849;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;MQRankSum=-2.301;QD=11.04;ReadPosRankSum=2.391;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:949,108,0 chrVI 100560 . T C 863 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=10.92;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:896,102,0 chrVI 100561 . A G 842 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=10.52;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:875,99,0 chrVI 100566 . T C 885 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=10.54;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:918,102,0 chrVI 100594 . T G 1004 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=12.87;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1037,117,0 chrVI 100633 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.17;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1643,186,0 chrVI 100677 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.27;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2266,258,0 chrVI 100932 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.72;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2419,279,0 chrVI 100946 . A C 2682 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.17;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2715,309,0 chrVI 101264 . A T 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.279;QD=19.60;ReadPosRankSum=1.650;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1679,180,0 chrVI 101280 . C A 1433 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.36;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1466,159,0 chrVI 101336 . A C 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;MQRankSum=-0.904;QD=17.78;ReadPosRankSum=1.657;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:93:851,93,0 chrVI 101439 . A G 466.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;DP=27;Dels=0.00;FS=33.617;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=2;MQRankSum=2.718;QD=17.26;ReadPosRankSum=-0.878;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:5,22:27:21:499,21,0 chrVI 101518 . G C 941 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=17.43;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:974,111,0 chrVI 101582 . G T 1534 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=21.61;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1567,171,0 chrVI 101826 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.31;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3203,348,0 chrVI 101859 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.46;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3660,396,0 chrVI 101913 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=153;Dels=0.00;FS=3.529;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.732;QD=21.70;ReadPosRankSum=1.709;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3320,384,0 chrVI 102071 . G A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.93;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4425,474,0 chrVI 102170 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.197;QD=21.55;ReadPosRankSum=1.601;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3448,381,0 chrVI 102345 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.02;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3795,411,0 chrVI 102489 . T G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.475;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.251;QD=22.62;ReadPosRankSum=1.707;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3154,348,0 chrVI 102528 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.90;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3275,372,0 chrVI 102609 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.17;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2277,255,0 chrVI 102624 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.33;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2159,228,0 chrVI 102635 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.16;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2275,249,0 chrVI 102744 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2407;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.70;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2876,306,0 chrVI 102816 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0675;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.67;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3972,432,0 chrVI 102880 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.71;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3246,372,0 chrVI 102885 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=4.303;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.633;QD=19.73;ReadPosRankSum=1.566;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3314,372,0 chrVI 102899 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.32;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3257,351,0 chrVI 102960 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.608;QD=21.47;ReadPosRankSum=1.714;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4229,477,0 chrVI 103002 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=160;Dels=0.00;FS=4.333;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.671;QD=22.41;ReadPosRankSum=-0.628;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3585,389,0 chrVI 103192 . A G 864 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.20;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:897,99,0 chrVI 103369 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=19.48;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1455,162,0 chrVI 103374 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=17.06;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1347,159,0 chrVI 103388 . T A 827 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=13.56;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:860,96,0 chrVI 103389 . T G 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.312;QD=12.69;ReadPosRankSum=1.619;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:93:807,93,0 chrVI 103493 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5492;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.480;QD=21.88;ReadPosRankSum=1.693;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3873,444,0 chrVI 103509 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.65;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3875,429,0 chrVI 103548 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.72;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3029,330,0 chrVI 103553 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.77;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2830,315,0 chrVI 103689 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.45;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3569,405,0 chrVI 103749 . G C 2211 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.56;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2244,258,0 chrVI 103824 . T C 1731 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.36;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1764,207,0 chrVI 103865 . A C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.390;QD=19.32;ReadPosRankSum=1.689;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1579,180,0 chrVI 103933 . A G 406 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=14.0484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.04;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:439,48,0 chrVI 104017 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=23.62;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2182,237,0 chrVI 104113 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.73;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2382,264,0 chrVI 104192 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.33;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2623,282,0 chrVI 104220 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.70;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2539,288,0 chrVI 104240 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2672,288,0 chrVI 104265 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1355;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=16.29;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2248,267,0 chrVI 104388 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.71;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1531,162,0 chrVI 104884 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.70;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3298,378,0 chrVI 104938 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.648;QD=22.57;ReadPosRankSum=1.690;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3702,414,0 chrVI 105370 . A G 6596.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=21.5937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:6596,762,0 chrVI 105427 . A G 6518.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=21.7088;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.12;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:6518,744,0 chrVI 105691 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.98;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4794,534,0 chrVI 105822 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.3738;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.41;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3513,390,0 chrVI 105937 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.74;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2999,318,0 chrVI 106096 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.64;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3306,357,0 chrVI 106194 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3448,384,0 chrVI 106291 . G T 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;DP=104;Dels=0.01;FS=141.678;HaplotypeScore=6.6651;MLEAC=1;MLEAF=0.500;MQ=57.24;MQ0=0;MQRankSum=0.524;QD=0.67;ReadPosRankSum=-7.313;SB=0.528 GT:AD:DP:GQ:PL 0/1:75,27:103:99:100,0,286 chrVI 106461 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.372;QD=24.54;ReadPosRankSum=1.667;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2659,297,0 chrVI 106494 . C G 2576 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.94;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2609,297,0 chrVI 106510 . C A 2500 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.12;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2533,288,0 chrVI 106583 . A G 2679 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2712,303,0 chrVI 106692 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=169;Dels=0.00;FS=5.771;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.244;QD=21.14;ReadPosRankSum=2.911;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3572,417,0 chrVI 106837 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0036;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.42;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4273,459,0 chrVI 106991 . A C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.155;HaplotypeScore=10.5521;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=1;MQRankSum=0.284;QD=18.72;ReadPosRankSum=1.704;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2335,267,0 chrVI 107101 . T A 2533 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.62;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2566,279,0 chrVI 107432 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.49;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3553,405,0 chrVI 107594 . G C 2101 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.01;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2134,243,0 chrVI 107738 . C T 1034 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.68;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1067,114,0 chrVI 107821 . G A 305 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.217;DP=74;Dels=0.00;FS=7.982;HaplotypeScore=62.4490;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=1.811;QD=4.12;ReadPosRankSum=-7.030;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:30,44:74:39:338,39,0 chrVI 107825 . G A 285 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.178;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=64.4300;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;MQRankSum=-1.409;QD=3.80;ReadPosRankSum=1.224;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:36:318,36,0 chrVI 107829 . G A 363 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.515;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=66.0074;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-0.983;QD=4.48;ReadPosRankSum=1.233;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:2,77:81:45:396,45,0 chrVI 107833 . G A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.3147;MLEAC=1;MLEAF=0.500;MQ=36.30;MQ0=0;MQRankSum=-1.687;QD=0.77;ReadPosRankSum=-3.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,10:81:92:92,0,175 chrVI 107837 . G A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;DP=80;Dels=0.00;FS=1.760;HaplotypeScore=4.1463;MLEAC=1;MLEAF=0.500;MQ=36.86;MQ0=0;MQRankSum=-0.119;QD=0.41;ReadPosRankSum=-3.899;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:73,7:80:63:63,0,256 chrVI 107838 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DP=82;Dels=0.00;FS=1.756;HaplotypeScore=4.1463;MLEAC=1;MLEAF=0.500;MQ=37.59;MQ0=0;MQRankSum=-0.797;QD=0.40;ReadPosRankSum=-3.784;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:75,7:82:63:63,0,266 chrVI 107844 . G A 370 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=4.57;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:45:403,45,0 chrVI 108074 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.88;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2970,327,0 chrVI 108113 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.24;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2813,312,0 chrVI 108416 . C T 4864.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.2609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4864,525,0 chrVI 108518 . C T 4919.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.76;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4919,537,0 chrVI 108617 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.35;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4319,465,0 chrVI 108665 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.020;QD=23.30;ReadPosRankSum=2.405;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3867,435,0 chrVI 108710 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.30;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3881,441,0 chrVI 108834 . G C 2204 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.19;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2237,249,0 chrVI 109402 . A C 2644 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0494;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.15;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2677,300,0 chrVI 109415 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.93;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2584,282,0 chrVI 109616 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.51;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4366,489,0 chrVI 110229 . T A 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.04;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,228,0 chrVI 110356 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.53;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2186,234,0 chrVI 110396 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.44;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2075,231,0 chrVI 110414 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.51;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1901,207,0 chrVI 110527 . C G 2019 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.75;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2052,228,0 chrVI 110650 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.80;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2758,300,0 chrVI 110655 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=5.322;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.237;QD=21.45;ReadPosRankSum=1.705;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2757,309,0 chrVI 110685 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.26;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2565,276,0 chrVI 111103 . A T 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=5.608;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.368;QD=22.99;ReadPosRankSum=2.898;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1619,177,0 chrVI 111133 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1720,189,0 chrVI 111258 . T A 1333 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.50;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1366,147,0 chrVI 111264 . A C 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=3.736;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.999;QD=20.75;ReadPosRankSum=1.666;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1112,123,0 chrVI 111687 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=131;Dels=0.00;FS=10.873;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.186;QD=23.41;ReadPosRankSum=2.931;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3100,345,0 chrVI 112003 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=139;Dels=0.00;FS=3.172;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.656;QD=20.34;ReadPosRankSum=1.707;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2860,330,0 chrVI 112154 . T C 1198 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1231,135,0 chrVI 112159 . A T 1245 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1278,135,0 chrVI 112214 . A G 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-2.027;QD=16.31;ReadPosRankSum=3.350;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,80:84:99:1403,162,0 chrVI 112269 . C A 616 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.21;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:72:649,72,0 chrVI 112318 . C T 518 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=24.7875;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.92;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:551,60,0 chrVI 112349 . T C 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.023;QD=13.69;ReadPosRankSum=2.359;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,52:55:87:786,87,0 chrVI 112383 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1408,153,0 chrVI 112418 . T C 1408 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.56;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1441,162,0 chrVI 112425 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.67;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1333,150,0 chrVI 112435 . A G 1284 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.12;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1317,144,0 chrVI 112624 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.62;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4228,453,0 chrVI 113076 . C A 2820 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.20;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2853,309,0 chrVI 113082 . T C 2601 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.12;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2634,294,0 chrVI 113085 . A G 2532 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.63;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2565,294,0 chrVI 113181 . T A 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.688;QD=24.49;ReadPosRankSum=1.688;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3820,414,0 chrVI 113247 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.371;QD=23.66;ReadPosRankSum=1.711;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3857,435,0 chrVI 113295 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=162;Dels=0.00;FS=3.093;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.338;QD=22.48;ReadPosRankSum=1.710;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3642,414,0 chrVI 113697 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.86;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3338,384,0 chrVI 113778 . T C 2315 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.86;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2348,273,0 chrVI 113799 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.34;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2167,234,0 chrVI 113910 . A G 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.765;QD=20.77;ReadPosRankSum=1.692;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1819,201,0 chrVI 114156 . T C 1090 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=16.77;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1123,129,0 chrVI 114171 . A T 1086 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.52;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1119,123,0 chrVI 114251 . T C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.744;QD=22.62;ReadPosRankSum=2.377;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1571,174,0 chrVI 114275 . C G 2073 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.03;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2106,231,0 chrVI 114340 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.382;QD=23.43;ReadPosRankSum=1.703;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2798,306,0 chrVI 114389 . T A 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=123;Dels=0.00;FS=5.438;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.680;QD=22.34;ReadPosRankSum=2.943;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2781,315,0 chrVI 114541 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.4354;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.43;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3612,411,0 chrVI 114751 . C G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.91;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3620,408,0 chrVI 114803 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3789,429,0 chrVI 114918 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9007;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.20;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2786,318,0 chrVI 115031 . T A 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.204;QD=23.30;ReadPosRankSum=1.681;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3202,345,0 chrVI 115088 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.528;QD=22.55;ReadPosRankSum=1.709;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3450,378,0 chrVI 115119 . T C 2621 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.33;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2654,303,0 chrVI 115181 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.03;FS=0.000;HaplotypeScore=24.2130;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=8.07;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:1106,120,0 chrVI 115494 . C G 6270.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=28.0402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,300:308:99:6270,714,0 chrVI 116088 . C G 5223.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.11;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5223,576,0 chrVI 116573 . G A 5731.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.39;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5731,651,0 chrVI 116839 . G C 2421 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2454,270,0 chrVI 118097 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.15;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3172,348,0 chrVI 118346 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2371,258,0 chrVI 118499 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.230;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.424;QD=19.22;ReadPosRankSum=1.661;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1917,219,0 chrVI 118563 . C A 1370 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.41;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1403,153,0 chrVI 119224 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.74;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3024,330,0 chrVI 119266 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.81;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2081,240,0 chrVI 119276 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=9.148;HaplotypeScore=59.5947;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-1.424;QD=17.31;ReadPosRankSum=2.381;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1903,222,0 chrVI 119328 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.680;QD=18.62;ReadPosRankSum=1.706;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2565,297,0 chrVI 119659 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2810,309,0 chrVI 120204 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2420,276,0 chrVI 120366 . G T 2136 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.73;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2169,237,0 chrVI 120550 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2411,261,0 chrVI 120772 . G C 2151 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2184,240,0 chrVI 122105 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.169;QD=19.23;ReadPosRankSum=2.877;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1764,195,0 chrVI 122143 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2156,237,0 chrVI 122197 . A T 1932 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1965,216,0 chrVI 122716 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.34;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2252,249,0 chrVI 122731 . A T 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=4.771;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.676;QD=18.81;ReadPosRankSum=1.699;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2008,219,0 chrVI 123067 . G T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.86;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3436,387,0 chrVI 123199 . T C 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=113;Dels=0.00;FS=6.802;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.386;QD=20.81;ReadPosRankSum=2.405;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2384,267,0 chrVI 123420 . A C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8262;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.68;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3584,414,0 chrVI 123774 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3855,438,0 chrVI 123823 . C A 2942 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2975,324,0 chrVI 124253 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=124;Dels=0.00;FS=7.125;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.796;QD=21.55;ReadPosRankSum=2.389;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2705,300,0 chrVI 124660 . G T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4319,471,0 chrVI 124909 . C G 3105 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3138,339,0 chrVI 125664 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.99;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2496,270,0 chrVI 126783 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3001,324,0 chrVI 127102 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2846,321,0 chrVI 127421 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2745,315,0 chrVI 127630 . A G 3179 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.72;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3212,357,0 chrVI 127726 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=7.977;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.534;QD=22.13;ReadPosRankSum=2.369;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2733,309,0 chrVI 127808 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3199,345,0 chrVI 127945 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2865,306,0 chrVI 128175 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.783;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.343;QD=22.97;ReadPosRankSum=2.401;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3491,399,0 chrVI 128252 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3847,417,0 chrVI 128350 . T A 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=3.199;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.430;QD=24.06;ReadPosRankSum=1.690;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3970,432,0 chrVI 128570 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.3621;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.823;QD=23.20;ReadPosRankSum=1.708;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3294,372,0 chrVI 128740 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.90;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2964,342,0 chrVI 128803 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.18;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2672,297,0 chrVI 128823 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.00;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2511,273,0 chrVI 129059 . G T 2076 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.40;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2109,237,0 chrVI 129074 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.44;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1958,210,0 chrVI 129133 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=123;Dels=0.00;FS=5.928;HaplotypeScore=8.0204;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.925;QD=19.11;ReadPosRankSum=2.892;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,118:123:99:2383,251,0 chrVI 129327 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.652;QD=22.46;ReadPosRankSum=1.705;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2953,324,0 chrVI 129460 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=126;Dels=0.00;FS=6.196;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.884;QD=21.45;ReadPosRankSum=2.411;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2736,315,0 chrVI 129547 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.67;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3385,363,0 chrVI 129805 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.27;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3062,330,0 chrVI 130058 . T A 2312 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4440;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.02;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2345,252,0 chrVI 130188 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.36;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2084,234,0 chrVI 130967 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=148;Dels=0.00;FS=6.592;HaplotypeScore=15.0215;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.732;QD=22.35;ReadPosRankSum=1.685;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3308,366,0 chrVI 130995 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=105;Dels=0.00;FS=6.064;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.600;QD=19.97;ReadPosRankSum=1.698;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,100:105:99:2130,237,0 chrVI 131200 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1269,141,0 chrVI 131237 . G C 1478 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.06;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1511,165,0 chrVI 131317 . T A 1484 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.82;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1517,177,0 chrVI 131646 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.94;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2797,318,0 chrVI 131953 . A G 2821 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2854,327,0 chrVI 132559 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.229;QD=21.00;ReadPosRankSum=1.704;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2679,306,0 chrVI 132667 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4242;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.60;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2855,315,0 chrVI 132951 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2431,273,0 chrVI 133255 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=10.2386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.259;QD=22.34;ReadPosRankSum=1.707;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3138,357,0 chrVI 133936 . G C 2540 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.5742;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.48;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2573,288,0 chrVI 134104 . A T 2640 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.16;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2673,285,0 chrVI 134123 . T G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=4.414;HaplotypeScore=5.3590;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.775;QD=20.90;ReadPosRankSum=1.699;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2248,249,0 chrVI 134248 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1969,213,0 chrVI 134670 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.58;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2743,300,0 chrVI 134777 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2991,324,0 chrVI 134989 . C A 3000 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3033,330,0 chrVI 135481 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1193,129,0 chrVI 135874 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.64;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2421,261,0 chrVI 135975 . T A 2019 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.43;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2052,216,0 chrVI 135976 . T A 2014 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.38;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2047,216,0 chrVI 136585 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2834,315,0 chrVI 137019 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3305,381,0 chrVI 137241 . C G 2173 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2206,246,0 chrVI 137294 . C A 1767 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.81;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1800,201,0 chrVI 137349 . A C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.838;QD=22.11;ReadPosRankSum=1.676;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1426,159,0 chrVI 137600 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=24.42;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1376,153,0 chrVI 137601 . A C 1363 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=24.34;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1396,156,0 chrVI 137634 . C A 1357 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.54;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1390,159,0 chrVI 137770 . A G 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-1.519;QD=6.20;ReadPosRankSum=1.519;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:132,15,0 chrVI 137780 . A G 74.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=6.77;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:107,12,0 chrVI 137783 . C T 69.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=6.32;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:102,12,0 chrVI 144890 . G A 520 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=12.09;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:43:63:553,63,0 chrVI 144966 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.77;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1399,162,0 chrVI 145086 . T C 2475 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.50;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2508,291,0 chrVI 145110 . A G 2475 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.45;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2508,291,0 chrVI 145543 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.73;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2380,273,0 chrVI 145894 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3615,390,0 chrVI 146049 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=9.740;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.413;QD=21.36;ReadPosRankSum=2.395;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2895,324,0 chrVI 146074 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.02;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2492,267,0 chrVI 146334 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.85;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2355,264,0 chrVI 146341 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.96;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2448,267,0 chrVI 146469 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.769;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.621;QD=23.09;ReadPosRankSum=1.679;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3081,345,0 chrVI 146528 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=126;Dels=0.00;FS=12.828;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.299;QD=19.91;ReadPosRankSum=3.388;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2542,285,0 chrVI 146545 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=3.034;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.615;QD=19.20;ReadPosRankSum=2.414;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2683,306,0 chrVI 146869 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.93;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1985,228,0 chrVI 146887 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.42;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1939,207,0 chrVI 147065 . A T 907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=6.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=-1.008;QD=13.54;ReadPosRankSum=1.681;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:940,102,0 chrVI 147067 . A T 866 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.32;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:899,102,0 chrVI 147109 . G A 979 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=9.99;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1012,117,0 chrVI 147121 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=13.00;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1528,168,0 chrVI 147361 . G T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.06;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3970,444,0 chrVI 147376 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.05;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3937,426,0 chrVI 147466 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=22.40;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4749,508,0 chrVI 147471 . A T 4659.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=22.29;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4659,501,0 chrVI 147481 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.28;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4056,462,0 chrVI 147986 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.47;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1893,204,0 chrVI 148368 . C G 1932 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.56;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1965,213,0 chrVI 148492 . A G 127.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=15.89;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:18:160,18,0 chrVI 148496 . C T 133.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=19.02;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:166,18,0 chrVI 148509 . C T 95.26 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=15.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:128,15,0 chrVI 148601 . A T 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.437;QD=3.92;ReadPosRankSum=2.451;SB=-3.415e-01 GT:AD:DP:GQ:PL 1/1:3,10:13:9:83,9,0 chrVI 148602 . T G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.475;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.9335;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.909;QD=3.50;ReadPosRankSum=2.758;SB=2.03 GT:AD:DP:GQ:PL 1/1:4,10:14:9:81,9,0 chrVI 148605 . T G 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=4.5108;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.793;QD=2.68;ReadPosRankSum=2.192;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:9:83,9,0 chrVI 148623 . G A 283 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.48;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:36:316,36,0 chrVI 148672 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=30.6163;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.288;QD=0.51;ReadPosRankSum=1.644;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,38:39:6:51,6,0 chrVI 148676 . A G 440 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.00;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:51:473,51,0 chrVI 148687 . A G 468 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.14;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:57:501,57,0 chrVI 148693 . T C 497 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-1.733;QD=12.42;ReadPosRankSum=1.646;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:60:530,60,0 chrVI 148700 . C T 428 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=11.26;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:51:461,51,0 chrVI 148729 . C G 593 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=15.21;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:69:626,69,0 chrVI 148751 . G A 612 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=13.02;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:645,69,0 chrVI 148756 . T C 629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-1.121;QD=12.33;ReadPosRankSum=1.664;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:75:662,75,0 chrVI 148828 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=22.07;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1313,141,0 chrVI 148875 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.533;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-0.854;QD=21.58;ReadPosRankSum=1.635;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1565,177,0 chrVI 148977 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.69;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1236,138,0 chrVI 148978 . T C 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;DP=67;Dels=0.00;FS=3.724;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.630;QD=18.51;ReadPosRankSum=1.260;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1273,144,0 chrVI 149084 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1734,186,0 chrVI 149493 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.131;QD=22.77;ReadPosRankSum=1.708;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3325,369,0 chrVI 149514 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.73;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3034,324,0 chrVI 149607 . T G 2868 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.89;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2901,333,0 chrVI 149649 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.8375;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.68;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2721,309,0 chrVI 149844 . T A 2192 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.28;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2225,246,0 chrVI 149865 . T A 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.740;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.375;QD=18.84;ReadPosRankSum=1.661;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1860,210,0 chrVI 150247 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=4.771;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=21.27;ReadPosRankSum=1.670;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2394,267,0 chrVI 150453 . T C 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=2.762;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.014;QD=22.47;ReadPosRankSum=2.263;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1808,207,0 chrVI 150723 . C A 2039 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2072,225,0 chrVI 151899 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=3.372;HaplotypeScore=13.8680;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.641;QD=21.61;ReadPosRankSum=1.697;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4321,498,0 chrVI 152014 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3306,381,0 chrVI 152163 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.62;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2878,330,0 chrVI 152660 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2874,306,0 chrVI 152714 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2411,282,0 chrVI 152837 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.12;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4026,444,0 chrVI 153323 . T A 2946 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.66;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2979,321,0 chrVI 153342 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.038;QD=18.52;ReadPosRankSum=1.707;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2570,291,0 chrVI 153360 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.05;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2573,288,0 chrVI 153974 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.96;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2883,312,0 chrVI 153977 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.58;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2715,306,0 chrVI 154568 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1759,195,0 chrVI 154845 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.726;QD=22.48;ReadPosRankSum=1.648;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2820,321,0 chrVI 154989 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.33;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2199,240,0 chrVI 155037 . T G 2055 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.63;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2088,234,0 chrVI 155068 . T C 2144 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.02;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2177,243,0 chrVI 155127 . G T 2512 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.05;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2545,276,0 chrVI 155140 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.67;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2395,264,0 chrVI 155178 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.67;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2323,255,0 chrVI 155228 . C A 2774 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.12;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2807,303,0 chrVI 155241 . T G 2548 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.41;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2581,297,0 chrVI 155336 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.83;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2888,309,0 chrVI 155681 . G T 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2489,270,0 chrVI 156120 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=116;Dels=0.00;FS=13.326;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.202;QD=22.13;ReadPosRankSum=2.886;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2600,306,0 chrVI 156375 . T C 2833 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.42;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2866,324,0 chrVI 156651 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3368,357,0 chrVI 156697 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.73;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2619,285,0 chrVI 156765 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.85;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3936,432,0 chrVI 156770 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.795;QD=22.60;ReadPosRankSum=1.691;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3910,441,0 chrVI 156786 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.693;QD=22.39;ReadPosRankSum=1.713;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4008,453,0 chrVI 156928 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=18.7623;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.36;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3785,408,0 chrVI 157162 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.86;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,432,0 chrVI 157416 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.522;QD=21.33;ReadPosRankSum=1.649;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1825,204,0 chrVI 157867 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=14.67;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1045,114,0 chrVI 157872 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=12.86;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:920,102,0 chrVI 157884 . T A 683 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=9.76;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:81:716,81,0 chrVI 157913 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=10.02;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:93:835,93,0 chrVI 158024 . T A 1209 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=21.21;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1242,141,0 chrVI 158037 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=19.23;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1225,141,0 chrVI 158046 . G C 1228 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;QD=18.33;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1261,150,0 chrVI 158080 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=17.57;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1456,174,0 chrVI 158086 . T C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=9.878;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=-1.772;QD=19.47;ReadPosRankSum=2.388;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1591,183,0 chrVI 158168 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.03;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1610,183,0 chrVI 158256 . A T 1658 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=24.75;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1691,183,0 chrVI 158283 . A G 1445 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=4.942;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;MQRankSum=0.266;QD=18.53;ReadPosRankSum=1.688;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1478,168,0 chrVI 158289 . G A 1440 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.548;DP=81;Dels=0.00;FS=4.997;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=1.162;QD=17.78;ReadPosRankSum=1.644;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1473,168,0 chrVI 158290 . G A 1565 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=19.09;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1598,171,0 chrVI 158337 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.62;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1626,186,0 chrVI 158348 . T G 1793 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=16.60;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1826,207,0 chrVI 158375 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=13.5305;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.43;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2158,240,0 chrVI 158505 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=1.155;QD=21.17;ReadPosRankSum=1.595;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2701,303,0 chrVI 158535 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.69;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2679,288,0 chrVI 158715 . A G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.485;QD=20.22;ReadPosRankSum=1.670;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2298,258,0 chrVI 158716 . A G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.638;QD=19.80;ReadPosRankSum=1.641;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2330,258,0 chrVI 158744 . T A 2604 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.03;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2637,291,0 chrVI 158840 . G T 3075 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3108,342,0 chrVI 159117 . T A 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.711;QD=21.76;ReadPosRankSum=1.688;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1730,192,0 chrVI 159165 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.00;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1837,201,0 chrVI 159235 . G C 2590 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.72;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2623,285,0 chrVI 159554 . A G 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=118;Dels=0.00;FS=11.931;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.494;QD=24.43;ReadPosRankSum=2.408;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2916,333,0 chrVI 159623 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3031,330,0 chrVI 159671 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3888,417,0 chrVI 159710 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.19;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4160,450,0 chrVI 159955 . T G 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.956;QD=19.78;ReadPosRankSum=1.702;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2327,267,0 chrVI 160138 . T A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.72;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3411,390,0 chrVI 160515 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=26.7185;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.54;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2827,306,0 chrVI 160603 . A C 2797 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.72;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2830,324,0 chrVI 160696 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.47;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3309,357,0 chrVI 161044 . G C 3062 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.72;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3095,354,0 chrVI 161071 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3497,378,0 chrVI 161110 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.52;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2885,309,0 chrVI 161152 . T C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=136;Dels=0.00;FS=5.282;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.019;QD=19.96;ReadPosRankSum=3.380;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:4,131:136:99:2747,312,0 chrVI 161167 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.631;QD=18.06;ReadPosRankSum=1.707;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2507,288,0 chrVI 161436 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.56;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1575,180,0 chrVI 161506 . A G 946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.945;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.8498;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.440;QD=19.31;ReadPosRankSum=2.249;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,47:49:99:979,114,0 chrVI 161565 . A G 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.124;QD=19.71;ReadPosRankSum=1.609;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:66:585,66,0 chrVI 161636 . A G 882 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=24.50;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:915,102,0 chrVI 161858 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=19.47;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1279,144,0 chrVI 161877 . G A 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=52.5409;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=0.271;QD=19.45;ReadPosRankSum=1.624;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1278,119,0 chrVI 161967 . G C 1353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DP=87;Dels=0.00;FS=2.828;HaplotypeScore=11.3562;MLEAC=1;MLEAF=0.500;MQ=46.94;MQ0=1;MQRankSum=3.956;QD=15.55;ReadPosRankSum=1.106;SB=-6.320e+02 GT:AD:DP:GQ:PL 0/1:13,72:87:88:1383,0,88 chrVI 162051 . A G 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;DP=77;Dels=0.00;FS=7.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=1;MQRankSum=0.633;QD=18.09;ReadPosRankSum=0.763;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1426,123,0 chrVI 162111 . A G 1211.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=70;Dels=0.00;FS=18.232;HaplotypeScore=9.4086;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=0;MQRankSum=3.446;QD=17.30;ReadPosRankSum=0.646;SB=-7.300e+02 GT:AD:DP:GQ:PL 0/1:7,63:70:22:1241,0,22 chrVI 162183 . A T 1623 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=23.19;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1656,177,0 chrVI 162197 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=20.84;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1492,168,0 chrVI 162211 . T A 1583 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=20.83;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1616,177,0 chrVI 162392 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.445;QD=23.74;ReadPosRankSum=2.349;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2360,267,0 chrVI 162613 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.60;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3961,426,0 chrVI 162872 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.854;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.111;QD=24.09;ReadPosRankSum=2.381;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3469,384,0 chrVI 163435 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.837;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.993;QD=20.01;ReadPosRankSum=1.709;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3054,342,0 chrVI 163447 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=4.122;HaplotypeScore=7.9059;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.190;QD=19.87;ReadPosRankSum=1.687;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3133,348,0 chrVI 163549 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.19;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3455,390,0 chrVI 164557 . A G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=3.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.379;QD=20.82;ReadPosRankSum=2.382;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3072,357,0 chrVI 164883 . G T 1893 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=22.9646;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.27;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1926,210,0 chrVI 165111 . A G 2447 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.30;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2480,279,0 chrVI 166074 . A G 3080 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3113,360,0 chrVI 166669 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.84;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1889,207,0 chrVI 167198 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.34;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2848,309,0 chrVI 167265 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0587;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.55;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2622,282,0 chrVI 167366 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=17.94;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1504,162,0 chrVI 167402 . C T 979 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=16.05;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1012,111,0 chrVI 167403 . C G 880 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=14.43;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:913,105,0 chrVI 167410 . A G 807 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=-0.687;QD=12.61;ReadPosRankSum=1.677;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:96:840,96,0 chrVI 167434 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=15.13;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1047,117,0 chrVI 167598 . T C 563 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=18.16;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:69:596,69,0 chrVI 167615 . G A 442 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=16.37;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:475,54,0 chrVI 167647 . A G 391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=1.428;QD=17.77;ReadPosRankSum=2.227;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:48:424,48,0 chrVI 167682 . G C 252 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.38;SB=-5.500e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:285,33,0 chrVI 167690 . T G 230 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.91;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:263,30,0 chrVI 167705 . A G 184.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.45;SB=-5.097e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:217,24,0 chrVI 167776 . T C 186.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.456;QD=9.79;ReadPosRankSum=1.552;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:24:219,24,0 chrVI 167782 . T C 205.01 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=8.91;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:27:238,27,0 chrVI 168102 . T A 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.002;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.673;QD=22.19;ReadPosRankSum=2.163;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1941,210,0 chrVI 168104 . T C 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=1.476;QD=21.78;ReadPosRankSum=2.393;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1906,216,0 chrVI 168202 . T C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.538;QD=22.01;ReadPosRankSum=1.708;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3224,357,0 chrVI 168241 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.822;QD=22.19;ReadPosRankSum=1.710;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3506,393,0 chrVI 168408 . G C 2350 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=14.51;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2383,270,0 chrVI 168422 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.0657;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=17.88;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2984,327,0 chrVI 168596 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=22.39;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3582,411,0 chrVI 168728 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.328;QD=21.99;ReadPosRankSum=1.703;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2672,300,0 chrVI 168984 . T C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.272;QD=18.31;ReadPosRankSum=2.386;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1443,168,0 chrVI 169392 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.178;QD=22.83;ReadPosRankSum=1.635;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2476,279,0 chrVI 169591 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.503;QD=21.60;ReadPosRankSum=1.695;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2042,231,0 chrVI 169635 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.43;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2647,288,0 chrVI 169649 . T G 2642 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.43;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2675,309,0 chrVI 169872 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=201;Dels=0.00;FS=7.776;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.104;QD=23.79;ReadPosRankSum=2.413;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4782,525,0 chrVI 169900 . A C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=4.600;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.287;QD=22.79;ReadPosRankSum=1.715;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4580,525,0 chrVI 169942 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.12;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4446,510,0 chrVI 170423 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=4.638;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.714;QD=22.83;ReadPosRankSum=1.667;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3652,402,0 chrVI 170473 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.70;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3179,345,0 chrVI 170689 . A C 3039 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.51;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3072,339,0 chrVI 170794 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.52;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2960,330,0 chrVI 171023 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.97;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3331,369,0 chrVI 171103 . G T 2374 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.19;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2407,264,0 chrVI 171241 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2401,270,0 chrVI 171355 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.60;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1992,213,0 chrVI 171376 . A G 1945 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.10;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1978,219,0 chrVI 171434 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.15;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2470,267,0 chrVI 171501 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2521,273,0 chrVI 172334 . G C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.16;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3543,390,0 chrVI 172581 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.67;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2527,273,0 chrVI 172598 . A T 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.254;QD=20.88;ReadPosRankSum=1.702;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2455,267,0 chrVI 172612 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.276;QD=20.55;ReadPosRankSum=1.671;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2376,261,0 chrVI 172635 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.99;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2232,237,0 chrVI 173376 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.02;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2072,222,0 chrVI 173398 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.55;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2339,252,0 chrVI 173500 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2863,312,0 chrVI 173599 . C T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.68;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4025,456,0 chrVI 173765 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=156;Dels=0.00;FS=2.815;HaplotypeScore=12.2772;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.795;QD=20.45;ReadPosRankSum=2.401;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3223,354,0 chrVI 173916 . T A 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.359;QD=20.90;ReadPosRankSum=1.664;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2165,231,0 chrVI 174110 . C G 1495 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=166.2394;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.08;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1528,171,0 chrVI 174484 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=166;Dels=0.00;FS=3.036;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.202;QD=20.42;ReadPosRankSum=2.390;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3390,396,0 chrVI 174519 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.54;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4190,453,0 chrVI 174556 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4579,510,0 chrVI 174682 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.22;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4482,486,0 chrVI 174712 . G A 4912.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.95;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4912,534,0 chrVI 174951 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.623;QD=21.59;ReadPosRankSum=1.660;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4145,465,0 chrVI 175060 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.010;HaplotypeScore=7.3550;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.836;QD=21.11;ReadPosRankSum=1.712;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3695,417,0 chrVI 175077 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=6.098;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.243;QD=21.20;ReadPosRankSum=2.406;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3626,402,0 chrVI 175153 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.24;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3270,369,0 chrVI 175342 . C A 3072 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.19;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3105,345,0 chrVI 175522 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4973;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.39;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3212,348,0 chrVI 175576 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.35;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3465,384,0 chrVI 175594 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.680;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.656;QD=19.30;ReadPosRankSum=1.711;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3179,357,0 chrVI 175597 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=4.5165;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=18.10;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2983,345,0 chrVI 176167 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.34;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4481,486,0 chrVI 176340 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.48;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2312,255,0 chrVI 176404 . T A 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=6.960;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-1.347;QD=7.21;ReadPosRankSum=1.636;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:1079,117,0 chrVI 176410 . G T 1239 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=8.32;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:1272,132,0 chrVI 176518 . T C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.257;QD=19.10;ReadPosRankSum=1.291;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2000,228,0 chrVI 176548 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.19;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1561,168,0 chrVI 176588 . T C 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.947;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.078;QD=21.24;ReadPosRankSum=2.325;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1711,192,0 chrVI 177249 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3559,411,0 chrVI 177337 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.11;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2708,294,0 chrVI 177366 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=12.334;HaplotypeScore=10.3429;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.500;QD=18.48;ReadPosRankSum=2.903;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2546,291,0 chrVI 177453 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2451,282,0 chrVI 177516 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.79;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3419,363,0 chrVI 177753 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=7.585;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=2.055;QD=20.48;ReadPosRankSum=2.412;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2737,306,0 chrVI 177798 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.58;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2564,285,0 chrVI 177890 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=21.62;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2541,273,0 chrVI 177999 . T C 2631 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=21.05;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2664,303,0 chrVI 178043 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=16.49;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1550,174,0 chrVI 178052 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;QD=15.50;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1335,147,0 chrVI 178054 . A T 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=2.562;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;MQRankSum=-2.663;QD=16.10;ReadPosRankSum=2.888;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1337,147,0 chrVI 178063 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=15.14;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1017,114,0 chrVI 178069 . T C 847 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=13.66;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:880,96,0 chrVI 178083 . A G 738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=-1.434;QD=12.72;ReadPosRankSum=1.673;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:87:771,87,0 chrVI 178096 . C T 671 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=13.98;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:75:704,75,0 chrVI 178120 . A C 236 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=0;QD=9.08;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:269,30,0 chrVI 178184 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.899;QD=1.13;ReadPosRankSum=2.216;SB=-4.977e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:6:55,6,0 chrVI 178193 . T C 119.13 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=4.41;SB=-5.414e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:152,18,0 chrVI 178195 . A T 182.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=6.74;SB=-4.804e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:24:215,24,0 chrVI 178204 . G A 240 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=6.49;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:273,30,0 chrVI 178210 . T C 308 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=6.70;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:39:341,39,0 chrVI 178224 . A G 613 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=10.05;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:72:646,72,0 chrVI 178261 . A C 2074 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=17.28;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2107,243,0 chrVI 178373 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=7.284;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=0.931;QD=20.23;ReadPosRankSum=2.407;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2360,264,0 chrVI 178425 . G C 2224 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=19.86;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2257,249,0 chrVI 178440 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=18.68;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2275,258,0 chrVI 178452 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=18.40;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2499,282,0 chrVI 178649 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.585;QD=18.17;ReadPosRankSum=1.708;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2668,297,0 chrVI 178655 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.88;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2808,306,0 chrVI 179345 . T C 519.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.099;DP=149;Dels=0.00;FS=5.374;HaplotypeScore=12.7877;MLEAC=1;MLEAF=0.500;MQ=46.63;MQ0=0;MQRankSum=-2.628;QD=3.48;ReadPosRankSum=-6.124;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:99,49:149:99:549,0,769 chrVI 179349 . A T 388.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.271;DP=150;Dels=0.01;FS=6.852;HaplotypeScore=14.6701;MLEAC=1;MLEAF=0.500;MQ=46.73;MQ0=0;MQRankSum=-3.076;QD=2.59;ReadPosRankSum=-8.553;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:102,46:148:99:418,0,987 chrVI 179350 . A T 352.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;DP=153;Dels=0.01;FS=15.217;HaplotypeScore=15.5135;MLEAC=1;MLEAF=0.500;MQ=47.03;MQ0=0;MQRankSum=-4.535;QD=2.30;ReadPosRankSum=-7.967;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:107,44:151:99:382,0,1092 chrVI 179606 . G C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.75;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3328,378,0 chrVI 179773 . G C 3757.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4477;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.34;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3757,417,0 chrVI 179957 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.871;QD=20.82;ReadPosRankSum=1.714;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4060,468,0 chrVI 179981 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.395;QD=21.17;ReadPosRankSum=1.688;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3345,378,0 chrVI 180152 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=4.489;HaplotypeScore=11.5170;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.779;QD=23.01;ReadPosRankSum=0.407;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3451,369,0 chrVI 180546 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.710;QD=22.70;ReadPosRankSum=1.704;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2803,315,0 chrVI 181154 . A C 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.732;QD=16.34;ReadPosRankSum=1.692;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1455,162,0 chrVI 181692 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2512,279,0 chrVI 181733 . T G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=5.546;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.633;QD=22.20;ReadPosRankSum=1.632;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2364,270,0 chrVI 181817 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1473,165,0 chrVI 184083 . G A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.24;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5141,582,0 chrVI 184339 . A G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=257;Dels=0.00;FS=6.490;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.093;QD=21.28;ReadPosRankSum=2.411;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5470,624,0 chrVI 184860 . G A 5030.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=22.8742;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.46;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5030,546,0 chrVI 185422 . A G 5274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=234;Dels=0.00;FS=10.965;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.168;QD=22.54;ReadPosRankSum=2.953;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5274,585,0 chrVI 185806 . C T 6412.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6412,696,0 chrVI 186097 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.7179;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.89;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2996,327,0 chrVI 186433 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=26.07;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1467,159,0 chrVI 186589 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.136;QD=23.07;ReadPosRankSum=1.675;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2871,327,0 chrVI 186667 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.67;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3086,348,0 chrVI 186748 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=6.6305;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.37;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2939,336,0 chrVI 186886 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.09;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2965,339,0 chrVI 186936 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2815,315,0 chrVI 187015 . A C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.451;QD=22.16;ReadPosRankSum=1.670;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2515,282,0 chrVI 187090 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0811;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.42;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3207,348,0 chrVI 187135 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3128,339,0 chrVI 187771 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.05;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2247,237,0 chrVI 187801 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1791,195,0 chrVI 188423 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.71;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2499,279,0 chrVI 189096 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.42;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3931,423,0 chrVI 189156 . G T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4535,513,0 chrVI 189505 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3136,354,0 chrVI 189631 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.08;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2364,270,0 chrVI 189700 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.29;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1816,198,0 chrVI 189752 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1995,222,0 chrVI 189828 . A C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=116;Dels=0.00;FS=12.113;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.114;QD=23.35;ReadPosRankSum=2.939;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2742,306,0 chrVI 189847 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.76;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2860,306,0 chrVI 190129 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.986;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.373;QD=22.00;ReadPosRankSum=2.386;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3410,387,0 chrVI 190170 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.099;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.686;QD=19.94;ReadPosRankSum=1.709;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3004,330,0 chrVI 190174 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.52;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2922,321,0 chrVI 190474 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.93;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1919,219,0 chrVI 190627 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.94;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2188,237,0 chrVI 190831 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.85;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1843,207,0 chrVI 190849 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.72;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1926,216,0 chrVI 190897 . A T 1851 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.48;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1884,204,0 chrVI 191180 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=24.15;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2520,270,0 chrVI 191392 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=0;QD=16.05;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1798,210,0 chrVI 191395 . A T 1933 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=17.41;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1966,210,0 chrVI 191409 . A T 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=110;Dels=0.00;FS=6.221;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;MQRankSum=-1.421;QD=16.84;ReadPosRankSum=2.360;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1885,204,0 chrVI 191416 . G T 1585 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=16.01;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1618,177,0 chrVI 191439 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=15.92;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1434,159,0 chrVI 191495 . A G 483 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=43.2935;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=0;QD=9.29;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:57:516,57,0 chrVI 191636 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=19.07;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1158,135,0 chrVI 191655 . T C 421 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=20.05;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,19:21:51:454,51,0 chrVI 191661 . T A 323 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=20.19;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:39:356,39,0 chrVI 191671 . G T 192.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=12.80;SB=-4.304e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:225,24,0 chrVI 191674 . T C 177.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=16;Dels=0.00;FS=7.270;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=0;MQRankSum=-1.735;QD=11.06;ReadPosRankSum=1.519;SB=-2.203e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:24:210,24,0 chrVI 191680 . C T 272 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=14.32;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:305,33,0 chrVI 191687 . A G 281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=-1.103;QD=12.22;ReadPosRankSum=1.576;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,21:23:36:314,36,0 chrVI 191758 . A G 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;MQRankSum=0.388;QD=18.75;ReadPosRankSum=1.681;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1289,141,0 chrVI 191775 . T C 1129 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=16.60;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1162,135,0 chrVI 191780 . C T 1083 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=16.16;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1116,132,0 chrVI 191793 . T C 825 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=14.73;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:858,102,0 chrVI 191794 . A G 875 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=15.62;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:908,102,0 chrVI 191799 . A G 711 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;MQRankSum=-1.347;QD=13.17;ReadPosRankSum=1.668;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:90:744,90,0 chrVI 191802 . G C 683 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=4.597;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;MQRankSum=-0.460;QD=13.94;ReadPosRankSum=1.662;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:87:716,87,0 chrVI 191803 . G A 734 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=14.98;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:767,90,0 chrVI 191827 . T C 391 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=13.03;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:424,48,0 chrVI 191836 . C T 329 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=13.71;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:362,42,0 chrVI 191847 . G T 175.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.75;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:208,24,0 chrVI 191856 . A C 119.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=7.94;SB=-9.613e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:152,18,0 chrVI 191860 . T C 143.06 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=9.54;SB=-9.707e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:21:176,21,0 chrVI 191880 . T C 113.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=9.43;SB=-7.112e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:146,18,0 chrVI 191885 . G A 134.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=0;QD=7.06;SB=-7.207e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:167,21,0 chrVI 191914 . T C 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.046;DP=56;Dels=0.00;FS=11.491;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;MQRankSum=-2.155;QD=14.46;ReadPosRankSum=3.362;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:5,51:56:89:843,89,0 chrVI 191930 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=17.82;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1191,147,0 chrVI 191945 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;MQRankSum=-1.644;QD=17.11;ReadPosRankSum=1.688;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1385,173,0 chrVI 191963 . G C 1557 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.31;MQ0=0;QD=17.90;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1590,194,0 chrVI 191994 . G T 1008 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=12.14;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1041,123,0 chrVI 192013 . C T 677 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=9.96;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:78:710,78,0 chrVI 192028 . C T 497 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=8.28;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:60:530,60,0 chrVI 192045 . A G 266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=20.572;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;MQRankSum=-0.859;QD=4.51;ReadPosRankSum=2.325;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:2,57:59:36:299,36,0 chrVI 192050 . A C 269 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=4.56;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:36:302,36,0 chrVI 192065 . C G 520 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.67;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:66:553,66,0 chrVI 192074 . A G 556 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=9.42;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:72:589,72,0 chrVI 192100 . C T 868 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=11.73;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:901,105,0 chrVI 192104 . A G 865 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=10.95;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:898,108,0 chrVI 192122 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=12.13;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1343,156,0 chrVI 192128 . C A 1446 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=11.95;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1479,177,0 chrVI 192134 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;MQRankSum=-1.481;QD=12.61;ReadPosRankSum=1.704;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1597,192,0 chrVI 192166 . G C 1971 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=13.32;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2004,237,0 chrVI 192172 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;QD=13.48;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2014,234,0 chrVI 192234 . T C 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=117;Dels=0.00;FS=5.628;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-0.851;QD=14.99;ReadPosRankSum=2.939;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:3,112:117:99:1787,195,0 chrVI 192240 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=16.39;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1869,201,0 chrVI 192358 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=23.44;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3914,423,0 chrVI 192485 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=19.32;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3086,345,0 chrVI 192545 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=14.74;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1728,198,0 chrVI 192551 . T A 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=4.700;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;MQRankSum=-1.217;QD=14.45;ReadPosRankSum=1.045;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1782,195,0 chrVI 192564 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=108;Dels=0.00;FS=2.602;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-0.196;QD=14.56;ReadPosRankSum=2.404;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:1605,180,0 chrVI 192590 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=104;Dels=0.00;FS=5.264;HaplotypeScore=6.7992;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=2.447;QD=17.05;ReadPosRankSum=2.933;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1806,204,0 chrVI 192707 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.54;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2558,285,0 chrVI 192732 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=22.79;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2608,291,0 chrVI 192850 . A C 2733 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.40;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2766,309,0 chrVI 192981 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.68;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3311,360,0 chrVI 193000 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.39;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3049,333,0 chrVI 193023 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.31;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2897,312,0 chrVI 193303 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.92;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3014,345,0 chrVI 193326 . G C 2434 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.33;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2467,270,0 chrVI 193556 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.42;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2793,309,0 chrVI 193734 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=4.620;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.996;QD=22.48;ReadPosRankSum=1.671;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2596,294,0 chrVI 193872 . T A 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=108;Dels=0.00;FS=2.997;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.832;QD=23.60;ReadPosRankSum=2.381;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2582,285,0 chrVI 194072 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=5.829;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.529;QD=22.35;ReadPosRankSum=1.716;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4962,564,0 chrVI 194081 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.55;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4939,540,0 chrVI 194154 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.06;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3310,384,0 chrVI 194162 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=172;Dels=0.00;FS=3.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-0.821;QD=19.90;ReadPosRankSum=2.407;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3422,393,0 chrVI 194187 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.555;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=-1.021;QD=17.12;ReadPosRankSum=1.554;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3338,387,0 chrVI 194193 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=2.890;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-1.085;QD=17.27;ReadPosRankSum=2.412;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3419,390,0 chrVI 194247 . G T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.7138;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.99;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4387,480,0 chrVI 194306 . C A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=20.25;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3665,405,0 chrVI 194319 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.02;FS=0.000;HaplotypeScore=18.9814;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.54;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3576,393,0 chrVI 194540 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.78;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2124,240,0 chrVI 194593 . G T 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.64;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1602,171,0 chrVI 196316 . C A 2410 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2443,276,0 chrVI 197402 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.94;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3192,357,0 chrVI 197486 . A T 2644 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.19;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2677,294,0 chrVI 197758 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.10;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3446,363,0 chrVI 197775 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6479;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.87;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2898,327,0 chrVI 197849 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.83;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3585,411,0 chrVI 198089 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.79;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4387,477,0 chrVI 198092 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=219;Dels=0.00;FS=11.100;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.739;QD=18.53;ReadPosRankSum=2.913;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:4059,468,0 chrVI 198116 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.7414;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.024;QD=18.43;ReadPosRankSum=1.669;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4036,450,0 chrVI 198275 . G T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.1996;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.67;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4940,540,0 chrVI 198427 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.68;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3699,408,0 chrVI 198446 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.79;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3570,414,0 chrVI 198501 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.5876;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.25;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3358,393,0 chrVI 198590 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.80;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3496,399,0 chrVI 198602 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.1046;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.82;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3783,429,0 chrVI 198638 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.89;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3959,441,0 chrVI 198689 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.2155;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.93;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3329,375,0 chrVI 199107 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.7859;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.54;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2952,324,0 chrVI 199207 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.77;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2235,243,0 chrVI 199246 . T C 2014 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.75;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2047,237,0 chrVI 199313 . A C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-1.586;QD=19.39;ReadPosRankSum=1.696;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1875,207,0 chrVI 199316 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.97;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1854,198,0 chrVI 199373 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.76;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2187,237,0 chrVI 199447 . T G 53.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=2.735;QD=0.50;ReadPosRankSum=-3.571;SB=-8.311e+01 GT:AD:DP:GQ:PL 0/1:99,5:106:13:83,0,13 chrVI 199469 . C A 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=101;Dels=0.00;FS=21.144;HaplotypeScore=10.6279;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.101;QD=10.90;ReadPosRankSum=2.628;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:9,92:101:99:1134,141,0 chrVI 199471 . A C 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;DP=100;Dels=0.02;FS=26.377;HaplotypeScore=18.3311;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.019;QD=10.86;ReadPosRankSum=3.497;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:8,90:98:99:1119,141,0 chrVI 199558 . A T 2779 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.97;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2812,306,0 chrVI 199576 . A C 2807 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.43;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2840,315,0 chrVI 199828 . G C 2180 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.58;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2213,255,0 chrVI 199969 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1702,189,0 chrVI 201624 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:979,108,0 chrVI 201882 . T C 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.953;QD=24.37;ReadPosRankSum=1.646;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:99:1008,108,0 chrVI 204894 . G T 1408 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=168.1906;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=1;QD=19.56;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1441,165,0 chrVI 205939 . C T 107.26 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=70.3822;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=1.36;SB=-1.133e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:15:140,15,0 chrVI 205949 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=77.2627;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;MQRankSum=-1.654;QD=0.20;ReadPosRankSum=1.693;SB=-2.528e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:6:49,6,0 chrVI 205988 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;MQRankSum=-0.930;QD=17.07;ReadPosRankSum=1.696;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1655,186,0 chrVI 206167 . G T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=24.24;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3539,384,0 chrVI 206215 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.45;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3131,354,0 chrVI 206355 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3641;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.33;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3966,432,0 chrVI 206445 . G C 3092 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=24.74;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3125,342,0 chrVI 206552 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.09;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1931,216,0 chrVI 206614 . C T 1791 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=21.58;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1824,195,0 chrVI 206615 . C T 1583 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=19.30;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1616,186,0 chrVI 206619 . G A 1734 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=20.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1767,195,0 chrVI 206706 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.77;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2105,228,0 chrVI 206741 . T A 1884 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.66;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1917,210,0 chrVI 206918 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.526;QD=21.46;ReadPosRankSum=1.701;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2436,276,0 chrVI 206984 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.567;QD=23.16;ReadPosRankSum=1.691;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:2002,228,0 chrVI 207041 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1359,153,0 chrVI 207125 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=25.61;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2184,243,0 chrVI 207192 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.06;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2261,264,0 chrVI 207279 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.17;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2694,297,0 chrVI 207357 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.05;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2701,300,0 chrVI 207374 . G C 2889 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.93;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2922,333,0 chrVI 207456 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=153;Dels=0.00;FS=5.882;HaplotypeScore=9.6518;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.530;QD=22.24;ReadPosRankSum=2.927;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3403,375,0 chrVI 207472 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.74;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3395,363,0 chrVI 207604 . C G 3165 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.91;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3198,372,0 chrVI 207607 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.36;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3230,354,0 chrVI 207679 . A C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=20.76;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3405,393,0 chrVI 207696 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.19;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3736,402,0 chrVI 207700 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=19.45;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3734,411,0 chrVI 207745 . C G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.561;HaplotypeScore=11.3273;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=1.505;QD=16.35;ReadPosRankSum=1.526;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:2813,324,0 chrVI 207856 . A G 1719 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=12.11;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1752,201,0 chrVI 207862 . G A 1447 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=10.64;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1480,168,0 chrVI 207865 . T C 1466 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=5.342;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=-0.826;QD=11.28;ReadPosRankSum=1.679;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1499,174,0 chrVI 208024 . T A 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=143;Dels=0.00;FS=2.660;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.335;QD=22.25;ReadPosRankSum=2.364;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3215,357,0 chrVI 208153 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=2.967;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.874;QD=21.85;ReadPosRankSum=1.221;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3408,390,0 chrVI 208165 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.87;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3038,351,0 chrVI 208427 . A T 842 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:99:875,99,0 chrVI 208668 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.79;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3472,396,0 chrVI 208850 . A T 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.169;QD=21.14;ReadPosRankSum=1.602;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2845,330,0 chrVI 210967 . C G 5513.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.9943;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5513,645,0 chrVI 211652 . T C 4916.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.1146;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.66;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4916,543,0 chrVI 211683 . T A 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=5.048;HaplotypeScore=10.1864;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.771;QD=21.38;ReadPosRankSum=1.717;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4853,537,0 chrVI 211826 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.66;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3552,393,0 chrVI 212121 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.74;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3703,420,0 chrVI 212247 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.0199;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.52;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4266,465,0 chrVI 213465 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3249,348,0 chrVI 213825 . G A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.62;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3891,420,0 chrVI 214157 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:2999,354,0 chrVI 219079 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.00;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2104,228,0 chrVI 221528 . C G 5114.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.9466;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,214:219:99:5114,564,0 chrVI 223266 . T G 1618 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1651,189,0 chrVI 225352 . C T 6215.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=17.4908;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.79;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6215,678,0 chrVI 225899 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.0819;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.30;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:4670,534,0 chrVI 225913 . G A 4831.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.56;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4831,525,0 chrVI 226036 . G C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9577;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.01;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3741,432,0 chrVI 226167 . C G 1685 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5791;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=9.80;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:1718,195,0 chrVI 226175 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.3028;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=9.72;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:1656,195,0 chrVI 226182 . A G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.01;FS=4.467;HaplotypeScore=13.6916;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;MQRankSum=-0.106;QD=9.71;ReadPosRankSum=1.713;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:1791,204,0 chrVI 226370 . T C 5537.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=23.26;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5537,612,0 chrVI 226463 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=19.03;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2925,336,0 chrVI 226791 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=19.79;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1735,189,0 chrVI 226796 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=11.321;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.467;QD=18.91;ReadPosRankSum=2.393;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1678,192,0 chrVI 226804 . C A 1748 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=18.21;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1781,195,0 chrVI 227025 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=212;Dels=0.00;FS=2.999;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.434;QD=21.71;ReadPosRankSum=2.368;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4603,531,0 chrVI 227223 . G T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.34;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4737,516,0 chrVI 227693 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.36;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3054,327,0 chrVI 228093 . C T 4652.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.4649;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.46;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4652,507,0 chrVI 228170 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.6936;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.60;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4449,483,0 chrVI 228332 . A G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.614;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.742;QD=20.81;ReadPosRankSum=1.597;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3237,354,0 chrVI 228344 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7998;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.31;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3059,330,0 chrVI 228509 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.128;HaplotypeScore=5.3763;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.417;QD=20.18;ReadPosRankSum=1.714;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3793,435,0 chrVI 228515 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2246;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.546;QD=19.54;ReadPosRankSum=1.600;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:3673,411,0 chrVI 228554 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=3.023;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.675;QD=20.10;ReadPosRankSum=2.411;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3839,432,0 chrVI 228605 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=21.26;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3763,414,0 chrVI 228617 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=6.097;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.320;QD=19.53;ReadPosRankSum=2.421;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3398,378,0 chrVI 228620 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.86;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3301,375,0 chrVI 229320 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.13;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3451,378,0 chrVI 229517 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.91;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4161,468,0 chrVI 229520 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.329;QD=19.84;ReadPosRankSum=1.697;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3869,444,0 chrVI 229790 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.6353;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.42;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2279,258,0 chrVI 229838 . T A 3042 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.05;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3075,330,0 chrVI 229862 . T A 2586 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.36;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2619,282,0 chrVI 230328 . T C 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=4.108;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.790;QD=19.73;ReadPosRankSum=1.665;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2065,231,0 chrVI 230333 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=3.854;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.034;QD=19.01;ReadPosRankSum=1.698;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1991,231,0 chrVI 230627 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.60;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1480,165,0 chrVI 230867 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.03;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1415,159,0 chrVI 230870 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.69;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1307,147,0 chrVI 230891 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.04;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1368,144,0 chrVI 230918 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=16.87;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1383,159,0 chrVI 230993 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1489,171,0 chrVI 231278 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2161,243,0 chrVI 231713 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.606;QD=22.26;ReadPosRankSum=1.707;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3082,363,0 chrVI 231775 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.587;QD=24.76;ReadPosRankSum=1.702;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2880,321,0 chrVI 231902 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2782,315,0 chrVI 231991 . A T 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.041;QD=23.16;ReadPosRankSum=2.368;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2117,225,0 chrVI 232626 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.84;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2441,264,0 chrVI 232697 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.19;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2607,303,0 chrVI 233791 . A C 1488 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.57;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1521,171,0 chrVI 233804 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.85;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1868,207,0 chrVI 233830 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.66;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1874,207,0 chrVI 234009 . A C 1480 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.42;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1513,174,0 chrVI 234085 . G C 1323 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.00;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1356,153,0 chrVI 234160 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1988,222,0 chrVI 234904 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=4.006;HaplotypeScore=4.2847;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.334;QD=21.25;ReadPosRankSum=1.711;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3422,387,0 chrVI 234914 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1380;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.37;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3761,411,0 chrVI 235213 . T C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=8.012;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.482;QD=19.94;ReadPosRankSum=2.312;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2526,279,0 chrVI 235342 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.84;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2180,249,0 chrVI 235446 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.304;HaplotypeScore=13.7198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.420;QD=25.52;ReadPosRankSum=-1.260;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3369,363,0 chrVI 235489 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.87;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3332,369,0 chrVI 235573 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.77;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3242,354,0 chrVI 235981 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2954,327,0 chrVI 237929 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.00;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2265,246,0 chrVI 237962 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.86;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2037,222,0 chrVI 237965 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.64;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1799,204,0 chrVI 238058 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.20;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2164,246,0 chrVI 238205 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.614;QD=22.44;ReadPosRankSum=1.693;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2008,231,0 chrVI 238213 . C A 2066 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.96;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2099,228,0 chrVI 238621 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.956;QD=22.55;ReadPosRankSum=1.702;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2649,300,0 chrVI 238703 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.37;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2852,303,0 chrVI 238707 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.49;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2615,291,0 chrVI 238877 . A C 2698 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.76;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2731,309,0 chrVI 239066 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2038,219,0 chrVI 239109 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1610,180,0 chrVI 239158 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.64;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1726,195,0 chrVI 239499 . C T 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.0225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.972;QD=20.43;ReadPosRankSum=0.213;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2362,258,0 chrVI 239639 . C G 2381 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.07;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2414,276,0 chrVI 239696 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.856;QD=24.69;ReadPosRankSum=1.690;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2082,231,0 chrVI 239957 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.34;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1664,189,0 chrVI 239986 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.23;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1976,213,0 chrVI 240289 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.12;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4513,504,0 chrVI 240352 . G C 4843.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.42;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4843,540,0 chrVI 240364 . C A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.17;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3852,441,0 chrVI 240385 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.28;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4278,471,0 chrVI 240610 . T C 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=243;Dels=0.00;FS=3.028;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.864;QD=20.29;ReadPosRankSum=2.399;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:4930,555,0 chrVI 240613 . G A 5163.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.0609;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.73;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5163,561,0 chrVI 241183 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.24;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4078,465,0 chrVI 241694 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.29;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2001,222,0 chrVI 241696 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.18;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1874,216,0 chrVI 241803 . C T 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.367;QD=20.52;ReadPosRankSum=0.402;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2064,222,0 chrVI 241821 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.25;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2038,219,0 chrVI 241842 . T A 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=6.500;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.203;QD=20.07;ReadPosRankSum=2.330;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2100,231,0 chrVI 241871 . G T 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=3.010;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.039;QD=21.55;ReadPosRankSum=0.416;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2210,240,0 chrVI 241949 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.149;QD=24.36;ReadPosRankSum=1.629;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2493,279,0 chrVI 241984 . G C 2572 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.17;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2605,297,0 chrVI 242528 . G T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.67;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3669,405,0 chrVI 242595 . C G 4356.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.6064;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.84;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4356,498,0 chrVI 242717 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.0563;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.46;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4424,486,0 chrVI 242843 . C G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.8422;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.18;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,161:168:99:3559,408,0 chrVI 242888 . A G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=134;Dels=0.00;FS=2.593;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.341;QD=22.23;ReadPosRankSum=2.947;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:3012,345,0 chrVI 244552 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0838;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.67;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3618,411,0 chrVI 244566 . C A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.61;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3696,396,0 chrVI 245484 . T G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=4.367;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.281;QD=21.19;ReadPosRankSum=1.704;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2682,294,0 chrVI 245505 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.25;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2381,258,0 chrVI 245506 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.70;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2476,267,0 chrVI 245578 . T A 2471 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.94;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2504,270,0 chrVI 245636 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.34;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2274,252,0 chrVI 245661 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.84;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1898,204,0 chrVI 246893 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.086;QD=22.61;ReadPosRankSum=1.673;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2723,306,0 chrVI 248151 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1358,147,0 chrVI 248365 . A G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=4.337;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=23.77;ReadPosRankSum=1.687;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1863,207,0 chrVI 250159 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3079,339,0 chrVI 253673 . T G 2698 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2731,315,0 chrVI 255999 . A G 2894 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.61;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2927,336,0 chrVI 257096 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.392;QD=22.57;ReadPosRankSum=1.707;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3125,357,0 chrVI 257822 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3046,327,0 chrVI 258551 . C A 3208 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3241,360,0 chrVI 259953 . T A 2406 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2439,267,0 chrVI 260447 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.52;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2808,306,0 chrVI 260499 . G T 2653 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2686,291,0 chrVI 262022 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.44;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3174,351,0 chrVI 262451 . T C 2736 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.19;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2769,306,0 chrVI 263080 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2600,279,0 chrVI 263664 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2744,309,0 chrVI 264371 . C G 3811.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3811,423,0 chrVI 265273 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.79;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1993,213,0 chrVI 265935 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3080,333,0 chrVI 268516 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.5473;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.74;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1713,195,0 chrVI 269633 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2001,216,0 chrVI 269754 . T A 1441 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1474,159,0 chrVI 269961 . C G 3132 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=25.46;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3165,351,0 chrVI 270091 . C T 2028 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=22.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2061,225,0 chrVII 127 . T C 1056.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.928;DP=505;Dels=0.01;FS=52.834;HaplotypeScore=275.1012;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=15;MQRankSum=-14.425;QD=2.09;ReadPosRankSum=4.685;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:262,239:501:99:1086,0,5565 chrVII 133 . C T 455.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.488;DP=511;Dels=0.00;FS=3.926;HaplotypeScore=455.0207;MLEAC=1;MLEAF=0.500;MQ=38.13;MQ0=17;MQRankSum=-10.187;QD=0.89;ReadPosRankSum=1.055;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:391,118:509:99:485,0,5896 chrVII 138 . C A 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=516;Dels=0.01;FS=73.500;HaplotypeScore=473.7465;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=17;MQRankSum=-15.197;QD=0.74;ReadPosRankSum=4.995;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:269,235:509:99:412,0,5739 chrVII 142 . A C 903.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.238;DP=535;Dels=0.01;FS=90.103;HaplotypeScore=439.4565;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=22;MQRankSum=-15.565;QD=1.69;ReadPosRankSum=2.218;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:259,263:532:99:933,0,5551 chrVII 331 . A G 2050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;DP=1000;DS;Dels=0.00;FS=40.002;HaplotypeScore=171.5275;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=35;MQRankSum=-17.648;QD=2.05;ReadPosRankSum=1.874;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:619,373:1000:99:2080,0,10027 chrVII 508 . C T 807.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.228;DP=716;Dels=0.00;FS=22.881;HaplotypeScore=90.3799;MLEAC=1;MLEAF=0.500;MQ=46.62;MQ0=23;MQRankSum=-18.430;QD=1.13;ReadPosRankSum=3.625;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:502,211:716:99:837,0,8445 chrVII 520 . T G 524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.411;DP=765;Dels=0.00;FS=193.702;HaplotypeScore=142.3048;MLEAC=1;MLEAF=0.500;MQ=45.13;MQ0=38;MQRankSum=-5.501;QD=0.68;ReadPosRankSum=3.329;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:648,111:765:99:554,0,8928 chrVII 1009 . A G 2837.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.425;DP=327;Dels=0.00;FS=8.318;HaplotypeScore=24.5311;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=3.210;QD=8.68;ReadPosRankSum=-0.551;SB=-1.389e+03 GT:AD:DP:GQ:PL 0/1:175,150:327:99:2867,0,3729 chrVII 1679 . C G 3152.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;DP=292;Dels=0.00;FS=3.882;HaplotypeScore=14.3795;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=0.056;QD=10.79;ReadPosRankSum=-0.587;SB=-1.667e+03 GT:AD:DP:GQ:PL 0/1:133,154:292:99:3182,0,2702 chrVII 2283 . C A 55.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.00;SB=-3.172e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:88,9,0 chrVII 2784 . A C 2552.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.703;DP=231;Dels=0.00;FS=5.704;HaplotypeScore=11.1313;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.027;QD=11.05;ReadPosRankSum=0.220;SB=-8.840e+02 GT:AD:DP:GQ:PL 0/1:109,122:231:99:2582,0,2390 chrVII 3087 . G T 2920.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.182;DP=295;Dels=0.00;FS=0.455;HaplotypeScore=23.8950;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=0.332;QD=9.90;ReadPosRankSum=0.687;SB=-1.047e+03 GT:AD:DP:GQ:PL 0/1:153,139:295:99:2950,0,2820 chrVII 3473 . G A 5766.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.4929;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.40;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5766,568,0 chrVII 3709 . C A 7855.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=11.4407;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.54;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7855,773,0 chrVII 3837 . C T 1995.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.624;DP=230;Dels=0.00;FS=1.616;HaplotypeScore=25.5305;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=1.623;QD=8.67;ReadPosRankSum=1.880;SB=-1.063e+03 GT:AD:DP:GQ:PL 0/1:117,110:230:99:2025,0,2131 chrVII 4102 . A T 2163.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.310;DP=241;Dels=0.00;FS=1.579;HaplotypeScore=16.7541;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.042;QD=8.98;ReadPosRankSum=2.348;SB=-1.089e+03 GT:AD:DP:GQ:PL 0/1:137,104:241:99:2193,0,2666 chrVII 4504 . T C 5817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=260;Dels=0.00;FS=2.855;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.628;QD=22.37;ReadPosRankSum=2.421;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:5817,604,0 chrVII 4516 . C T 5920.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.09;SB=-3.543e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5920,589,0 chrVII 4998 . A G 6479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.200;DP=656;Dels=0.00;FS=10.048;HaplotypeScore=43.4785;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.293;QD=9.88;ReadPosRankSum=0.251;SB=-3.633e+03 GT:AD:DP:GQ:PL 0/1:323,332:656:99:6479,0,6706 chrVII 5092 . C A 10698.01 filter AC=2;AF=1.00;AN=2;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=24.5572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-5.129e+03 GT:AD:DP:GQ:PL 1/1:0,432:433:99:10698,1067,0 chrVII 5297 . T C 4082.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.026;DP=436;Dels=0.00;FS=3.014;HaplotypeScore=16.5791;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=1.042;QD=9.36;ReadPosRankSum=-0.164;SB=-1.936e+03 GT:AD:DP:GQ:PL 0/1:234,199:436:99:4082,0,4927 chrVII 5533 . C T 4085.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.909;DP=404;Dels=0.00;FS=4.964;HaplotypeScore=33.5012;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=1.614;QD=10.11;ReadPosRankSum=-1.794;SB=-1.917e+03 GT:AD:DP:GQ:PL 0/1:205,195:404:99:4085,0,4139 chrVII 5566 . T G 2907.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.025;DP=352;Dels=0.00;FS=7.854;HaplotypeScore=33.4290;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-1.409;QD=8.26;ReadPosRankSum=-0.536;SB=-1.399e+03 GT:AD:DP:GQ:PL 0/1:194,158:352:99:2937,0,4340 chrVII 5754 . A C 6460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=281;Dels=0.00;FS=2.562;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.525;QD=22.99;ReadPosRankSum=2.975;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:3,278:281:99:6460,697,0 chrVII 5910 . A G 1358.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.751;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-0.472;QD=10.21;ReadPosRankSum=0.251;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:61,72:133:99:1388,0,1159 chrVII 6329 . A C 916.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;DP=161;Dels=0.00;FS=1.488;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.55;MQ0=12;MQRankSum=6.042;QD=5.69;ReadPosRankSum=-0.413;SB=-3.980e+02 GT:AD:DP:GQ:PL 0/1:85,76:161:99:946,0,1301 chrVII 6330 . C T 927.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.806;DP=159;Dels=0.00;FS=1.498;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=12;MQRankSum=6.005;QD=5.83;ReadPosRankSum=-0.466;SB=-4.260e+02 GT:AD:DP:GQ:PL 0/1:83,75:159:99:957,0,1230 chrVII 6332 . G A 1038.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DP=147;Dels=0.00;FS=0.703;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=12;MQRankSum=-4.871;QD=7.06;ReadPosRankSum=0.619;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:70,77:147:99:1068,0,1162 chrVII 6368 . A G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=114;Dels=0.00;FS=35.923;HaplotypeScore=7.7227;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=18;MQRankSum=-5.501;QD=0.42;ReadPosRankSum=2.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,30:114:78:78,0,904 chrVII 6410 . A G 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;DP=311;Dels=0.00;FS=188.172;HaplotypeScore=23.0474;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=46;MQRankSum=-8.150;QD=0.21;ReadPosRankSum=0.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,67:311:96:96,0,2656 chrVII 6419 . G A 3418.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DP=379;Dels=0.00;FS=238.917;HaplotypeScore=28.7082;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=54;MQRankSum=6.379;QD=9.02;ReadPosRankSum=0.271;SB=-1.765e+03 GT:AD:DP:GQ:PL 0/1:89,286:379:99:3418,0,322 chrVII 6455 . A G 601.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264;DP=503;Dels=0.00;FS=409.956;HaplotypeScore=25.0709;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=53;MQRankSum=-7.742;QD=1.19;ReadPosRankSum=0.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:396,107:503:99:631,0,5719 chrVII 6457 . C T 616.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.842;DP=506;Dels=0.00;FS=417.751;HaplotypeScore=21.7662;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=52;MQRankSum=-7.479;QD=1.22;ReadPosRankSum=0.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:399,107:506:99:646,0,5626 chrVII 6461 . A G 5261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.239;DP=504;Dels=0.00;FS=445.617;HaplotypeScore=12.3568;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=51;MQRankSum=7.666;QD=10.44;ReadPosRankSum=-0.221;SB=-2.113e+03 GT:AD:DP:GQ:PL 0/1:114,390:504:99:5261,0,632 chrVII 6476 . C A 506.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.280;DP=487;Dels=0.00;FS=158.822;HaplotypeScore=46.8914;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=39;MQRankSum=-8.931;QD=1.04;ReadPosRankSum=1.120;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:359,128:487:99:536,0,5177 chrVII 6482 . G A 304.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.512;DP=479;Dels=0.00;FS=388.207;HaplotypeScore=52.5534;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=37;MQRankSum=-6.891;QD=0.63;ReadPosRankSum=2.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:392,87:479:99:334,0,5496 chrVII 6485 . G A 339.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.987;DP=467;Dels=0.00;FS=386.071;HaplotypeScore=54.0254;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=31;MQRankSum=-6.350;QD=0.73;ReadPosRankSum=1.985;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:381,86:467:99:369,0,5063 chrVII 6509 . A G 4938.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.781;DP=367;Dels=0.00;FS=41.655;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=17;MQRankSum=-2.448;QD=13.46;ReadPosRankSum=4.746;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:8,359:367:99:4938,522,0 chrVII 6545 . T C 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=0;MQRankSum=2.232;QD=7.03;ReadPosRankSum=2.427;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:2,212:214:99:1537,162,0 chrVII 6551 . A C 1313 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;DP=228;Dels=0.00;FS=2.181;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=18;MQRankSum=1.965;QD=5.76;ReadPosRankSum=1.041;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:14,213:228:99:1346,103,0 chrVII 6557 . A G 1242 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=222;Dels=0.00;FS=24.438;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=29;MQRankSum=1.273;QD=5.59;ReadPosRankSum=2.424;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:2,219:222:99:1275,135,0 chrVII 6575 . C T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DP=314;Dels=0.00;FS=131.224;HaplotypeScore=10.2488;MLEAC=1;MLEAF=0.500;MQ=23.54;MQ0=31;MQRankSum=-6.947;QD=0.31;ReadPosRankSum=3.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,93:314:99:128,0,2498 chrVII 6669 . T G 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.220;DP=643;Dels=0.00;FS=323.184;HaplotypeScore=57.3339;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=33;MQRankSum=-14.657;QD=0.13;ReadPosRankSum=-0.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:399,241:643:99:116,0,7515 chrVII 6679 . G A 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.791;DP=644;Dels=0.00;FS=316.715;HaplotypeScore=161.1265;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=7;MQRankSum=-14.906;QD=0.33;ReadPosRankSum=-1.476;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:393,248:644:99:242,0,7556 chrVII 6798 . A G 1080.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.265;DP=746;Dels=0.00;FS=8.863;HaplotypeScore=208.5767;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=40;MQRankSum=-4.954;QD=1.45;ReadPosRankSum=6.529;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:591,150:744:99:1110,0,9175 chrVII 6799 . T C 4194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.399;DP=750;Dels=0.00;FS=13.966;HaplotypeScore=220.6330;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=42;MQRankSum=0.591;QD=5.59;ReadPosRankSum=0.679;SB=-1.828e+03 GT:AD:DP:GQ:PL 0/1:414,331:748:99:4194,0,5701 chrVII 6816 . A G 3327.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-15.277;DP=731;Dels=0.00;FS=13.913;HaplotypeScore=264.8741;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=37;MQRankSum=9.926;QD=4.55;ReadPosRankSum=7.709;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:494,231:731:99:3327,0,5648 chrVII 6822 . C T 1782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.005;DP=741;Dels=0.00;FS=40.352;HaplotypeScore=250.8016;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=35;MQRankSum=-3.601;QD=2.40;ReadPosRankSum=-2.181;SB=-6.680e+02 GT:AD:DP:GQ:PL 0/1:508,230:741:99:1812,0,7606 chrVII 6863 . G A 651.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.724;DP=785;Dels=0.00;FS=417.998;HaplotypeScore=137.9311;MLEAC=1;MLEAF=0.500;MQ=31.26;MQ0=14;MQRankSum=-6.234;QD=0.83;ReadPosRankSum=-0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:649,134:785:99:681,0,10434 chrVII 6869 . C T 953.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.503;DP=776;Dels=0.00;FS=365.522;HaplotypeScore=137.0426;MLEAC=1;MLEAF=0.500;MQ=31.62;MQ0=8;MQRankSum=-4.466;QD=1.23;ReadPosRankSum=-1.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:625,146:776:99:983,0,10249 chrVII 6899 . C G 2267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DP=762;Dels=0.00;FS=404.950;HaplotypeScore=178.8262;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=4;MQRankSum=-6.235;QD=2.98;ReadPosRankSum=-0.918;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:536,219:762:99:2297,0,8178 chrVII 6921 . T C 2608.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DP=794;Dels=0.00;FS=546.640;HaplotypeScore=125.3099;MLEAC=1;MLEAF=0.500;MQ=35.91;MQ0=4;MQRankSum=-6.675;QD=3.28;ReadPosRankSum=1.761;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:553,239:794:99:2638,0,8070 chrVII 6925 . A T 2952.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.438;DP=806;Dels=0.00;FS=573.928;HaplotypeScore=198.7910;MLEAC=1;MLEAF=0.500;MQ=35.92;MQ0=4;MQRankSum=-5.709;QD=3.66;ReadPosRankSum=1.578;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:540,266:806:99:2982,0,7240 chrVII 6933 . A G 2063.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.258;DP=796;Dels=0.00;FS=450.999;HaplotypeScore=192.1807;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=10;MQRankSum=-3.007;QD=2.59;ReadPosRankSum=0.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:568,224:796:99:2093,0,8263 chrVII 6936 . C T 1846.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.691;DP=805;Dels=0.00;FS=411.103;HaplotypeScore=153.9918;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=13;MQRankSum=-1.974;QD=2.29;ReadPosRankSum=-0.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:578,225:805:99:1876,0,7984 chrVII 6968 . G T 920.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.726;DP=783;Dels=0.00;FS=223.662;HaplotypeScore=219.9240;MLEAC=1;MLEAF=0.500;MQ=32.18;MQ0=24;MQRankSum=-0.731;QD=1.17;ReadPosRankSum=0.812;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:630,148:783:99:950,0,9225 chrVII 6971 . A T 524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.023;DP=784;Dels=0.00;FS=259.953;HaplotypeScore=214.3835;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=27;MQRankSum=0.127;QD=0.67;ReadPosRankSum=1.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:641,143:784:99:554,0,9806 chrVII 6997 . A G 8677.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DP=721;Dels=0.00;FS=227.761;HaplotypeScore=133.0645;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=36;MQRankSum=11.334;QD=12.03;ReadPosRankSum=3.250;SB=-4.799e+03 GT:AD:DP:GQ:PL 0/1:207,509:721:99:8677,0,416 chrVII 7948 . A G 2182 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.6310;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=5;MQRankSum=1.697;QD=20.78;ReadPosRankSum=1.591;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2215,231,0 chrVII 8820 . A G 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.005;DP=98;Dels=0.00;FS=153.947;HaplotypeScore=5.7254;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=2;MQRankSum=0.013;QD=1.35;ReadPosRankSum=-1.764;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,26:98:99:162,0,339 chrVII 8825 . C T 307.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.548;DP=85;Dels=0.00;FS=130.824;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=1;MQRankSum=1.696;QD=3.61;ReadPosRankSum=3.166;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:21,64:85:99:337,0,100 chrVII 8831 . C T 305.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.435;DP=79;Dels=0.00;FS=109.443;HaplotypeScore=54.1186;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=1.580;QD=3.86;ReadPosRankSum=3.361;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:16,63:79:99:335,0,99 chrVII 8832 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DP=79;Dels=0.00;FS=95.901;HaplotypeScore=56.1106;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=-0.032;QD=0.62;ReadPosRankSum=-2.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,14:79:79:79,0,358 chrVII 8834 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;DP=83;Dels=0.02;FS=97.560;HaplotypeScore=65.8777;MLEAC=1;MLEAF=0.500;MQ=30.39;MQ0=0;MQRankSum=-0.231;QD=0.61;ReadPosRankSum=-2.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,14:81:81:81,0,379 chrVII 8835 . C T 341.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DP=81;Dels=0.04;FS=95.053;HaplotypeScore=65.8777;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=0;MQRankSum=1.243;QD=4.21;ReadPosRankSum=3.210;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:14,64:78:80:371,0,80 chrVII 8837 . C A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=81;Dels=0.00;FS=97.560;HaplotypeScore=65.8777;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=0;MQRankSum=-0.593;QD=0.28;ReadPosRankSum=-3.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,14:81:53:53,0,355 chrVII 8879 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;DP=81;Dels=0.00;FS=2.325;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;MQRankSum=1.317;QD=15.54;ReadPosRankSum=1.038;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1292,135,0 chrVII 8880 . G C 1264 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=15.41;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1297,138,0 chrVII 8957 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.305;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=1.107;QD=21.66;ReadPosRankSum=1.704;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2675,288,0 chrVII 8975 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=22.32;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2645,270,0 chrVII 8977 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=21.33;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2465,270,0 chrVII 9029 . G T 2016 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=19.96;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2049,210,0 chrVII 9044 . T G 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=108;Dels=0.01;FS=3.042;HaplotypeScore=18.2085;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-0.504;QD=18.35;ReadPosRankSum=2.333;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,103:107:99:2015,213,0 chrVII 9126 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=25.42;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3432,343,0 chrVII 9188 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=26.18;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3718,373,0 chrVII 9253 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.03;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3404,349,0 chrVII 9430 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.296;QD=22.09;ReadPosRankSum=1.705;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2883,297,0 chrVII 9885 . T A 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.673;QD=25.44;ReadPosRankSum=1.643;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3009,298,0 chrVII 9977 . G T 2948 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=24.98;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2981,298,0 chrVII 10029 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.46;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2821,285,0 chrVII 10093 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.58;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2847,286,0 chrVII 10149 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=24.67;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2549,267,0 chrVII 10166 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=24.53;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2167,213,0 chrVII 10173 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2046;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=22.81;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2063,204,0 chrVII 10208 . T G 1441 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=18.24;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1474,153,0 chrVII 10224 . T C 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=87;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.411;QD=16.60;ReadPosRankSum=2.365;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1477,153,0 chrVII 10242 . T A 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=2.635;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;MQRankSum=-0.971;QD=18.98;ReadPosRankSum=2.392;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1646,168,0 chrVII 10302 . G C 2833 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=24.01;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2866,294,0 chrVII 10386 . T C 2626 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=18;MQRankSum=-0.975;QD=19.17;ReadPosRankSum=1.703;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2659,257,0 chrVII 10427 . C T 2744 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=16;QD=20.63;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2777,280,0 chrVII 10505 . T A 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=3.651;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-0.713;QD=23.37;ReadPosRankSum=1.664;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2417,243,0 chrVII 10507 . A G 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-1.068;QD=23.33;ReadPosRankSum=2.400;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2343,243,0 chrVII 10700 . G C 1242 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=11;QD=16.13;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1275,138,0 chrVII 10705 . G C 1180 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=14;QD=16.39;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1213,129,0 chrVII 10804 . A G 1146 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;QD=17.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1179,126,0 chrVII 10812 . C T 952 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=14.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:64:99:985,114,0 chrVII 10814 . T C 1042 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=17.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1075,111,0 chrVII 10823 . T C 848 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=18.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:90:881,90,0 chrVII 10827 . G A 819 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=19.50;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:852,84,0 chrVII 10829 . C G 763 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=18.17;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:796,84,0 chrVII 10843 . T G 589 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=13.39;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:622,66,0 chrVII 10851 . A G 378 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=11.12;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:411,42,0 chrVII 10852 . A C 385 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=11.32;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:418,42,0 chrVII 10855 . A T 386 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=11.35;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:419,42,0 chrVII 10856 . T C 352 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=10.35;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:385,42,0 chrVII 10867 . A C 359 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=8.76;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:392,45,0 chrVII 10875 . T C 304 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=1;QD=8.22;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:337,36,0 chrVII 10877 . C G 306 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=1;QD=8.27;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:339,36,0 chrVII 10975 . T A 414 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9715;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=2;MQRankSum=0.258;QD=8.45;ReadPosRankSum=1.659;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,48:49:48:447,48,0 chrVII 10982 . A T 504 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9715;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;QD=8.00;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:54:537,54,0 chrVII 10996 . C T 617 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=8.81;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:66:650,66,0 chrVII 11005 . A G 595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=7.83;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:66:628,66,0 chrVII 11008 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=9.68;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:81:798,81,0 chrVII 11034 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=2;QD=10.31;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:992,105,0 chrVII 11076 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=3;QD=14.32;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1322,138,0 chrVII 11102 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=3;QD=11.93;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1226,126,0 chrVII 11108 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=2;QD=11.12;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1167,117,0 chrVII 11164 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1255;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=1;QD=22.79;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4057,418,0 chrVII 11409 . C T 4996.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.0415;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.25;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4996,496,0 chrVII 11635 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=23.99;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3430,346,0 chrVII 11747 . C G 1626 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=62.4923;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=18.07;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1659,177,0 chrVII 11758 . A T 174.06 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=62.6839;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=2.35;SB=-4.261e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:21:207,21,0 chrVII 11760 . G T 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=114.3809;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=1.84;SB=-3.711e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:18:165,18,0 chrVII 11768 . T C 1163 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=60.6756;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=16.15;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1196,126,0 chrVII 11806 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.75;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1009,102,0 chrVII 11826 . T G 607 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=15.17;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:640,66,0 chrVII 11838 . G A 634 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=16.26;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:667,66,0 chrVII 11900 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=22.03;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:870,90,0 chrVII 11908 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=24.21;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:977,102,0 chrVII 11932 . A G 728 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=23.48;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:761,87,0 chrVII 11980 . G A 312 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=22.29;SB=-1.619e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:345,39,0 chrVII 11990 . A T 135.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;MQRankSum=-0.474;QD=12.28;ReadPosRankSum=1.423;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:1,10:11:18:168,18,0 chrVII 12003 . T C 92.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=18.45;SB=-4.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:125,15,0 chrVII 12007 . C T 81.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=16.30;SB=-4.255e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:114,12,0 chrVII 12020 . A G 51.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:84,9,0 chrVII 12025 . A G 82.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:115,12,0 chrVII 12062 . G A 205.03 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=22.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:238,24,0 chrVII 12067 . C T 155.06 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=19.38;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:188,21,0 chrVII 12072 . A G 154.06 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=19.26;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:187,21,0 chrVII 12074 . T C 153.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=0.751;QD=17.01;ReadPosRankSum=0.751;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:21:186,21,0 chrVII 12086 . G A 257 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=16.06;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:290,33,0 chrVII 12101 . C T 296 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=10.57;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:329,39,0 chrVII 12125 . C T 312 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.59;MQ0=0;QD=8.91;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:345,45,0 chrVII 12155 . A G 262 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=0;QD=7.49;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:295,39,0 chrVII 12165 . G C 281 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=16.5876;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=0;QD=8.03;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:314,42,0 chrVII 12180 . A G 125.06 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=0;QD=6.58;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:158,21,0 chrVII 12185 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=0;QD=1.00;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrVII 12186 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=0;QD=1.00;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrVII 12187 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=0;QD=1.00;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrVII 12192 . G A 82.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=0;QD=6.86;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:115,15,0 chrVII 12210 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrVII 12214 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.71;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrVII 12231 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrVII 12277 . A G 147.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=7.00;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:24:180,24,0 chrVII 12322 . A C 714 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=13.22;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:747,96,0 chrVII 12329 . G T 747 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=12.88;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:780,99,0 chrVII 12339 . A C 735 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=11.48;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:768,99,0 chrVII 12355 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=11.97;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:907,114,0 chrVII 12386 . G T 265 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=6.31;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:42:33:298,33,0 chrVII 12387 . T A 254 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=6.35;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:33:287,33,0 chrVII 12388 . G T 263 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=6.58;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:33:296,33,0 chrVII 12396 . T A 270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-1.732;QD=5.74;ReadPosRankSum=1.659;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:33:303,33,0 chrVII 12436 . G C 450 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=7.14;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:54:483,54,0 chrVII 12448 . A G 463 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=7.47;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:57:496,57,0 chrVII 12454 . T C 444 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=7.28;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:54:477,54,0 chrVII 12455 . G A 462 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=7.57;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:54:495,54,0 chrVII 12479 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=11.44;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:891,99,0 chrVII 12505 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=17.28;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1640,168,0 chrVII 12524 . A T 2134 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=22.46;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2167,219,0 chrVII 12565 . A T 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;MQRankSum=-0.926;QD=25.92;ReadPosRankSum=1.643;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3040,306,0 chrVII 12610 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.920;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.193;QD=23.96;ReadPosRankSum=2.360;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3306,351,0 chrVII 12663 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-1.020;QD=23.87;ReadPosRankSum=1.658;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3366,348,0 chrVII 12742 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=24.08;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3781,388,0 chrVII 12756 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.926;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=1.815;QD=21.46;ReadPosRankSum=2.386;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3347,354,0 chrVII 12769 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.396;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.596;QD=20.20;ReadPosRankSum=1.709;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3144,333,0 chrVII 12778 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=20.65;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3255,325,0 chrVII 12793 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=19.07;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2950,315,0 chrVII 12853 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=21.47;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2674,276,0 chrVII 12857 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=21.36;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2746,282,0 chrVII 12874 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=118;Dels=0.00;FS=8.530;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;MQRankSum=-2.253;QD=17.92;ReadPosRankSum=3.279;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:2147,237,0 chrVII 12884 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=17.63;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2061,231,0 chrVII 12937 . T C 2262 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=18.10;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2295,249,0 chrVII 12940 . T C 2382 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=19.69;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2415,258,0 chrVII 12946 . C T 2363 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=19.37;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2396,261,0 chrVII 13009 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=20.48;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2409,270,0 chrVII 13045 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=21.94;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2161,240,0 chrVII 13050 . T C 1934 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=21.49;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1967,225,0 chrVII 13066 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=19.86;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1781,198,0 chrVII 13105 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=0.680;QD=17.59;ReadPosRankSum=1.688;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1423,156,0 chrVII 13111 . T C 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=75;Dels=0.00;FS=6.439;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-0.871;QD=17.61;ReadPosRankSum=2.384;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1354,147,0 chrVII 13120 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=18.21;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1435,156,0 chrVII 13185 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=19.84;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1422,150,0 chrVII 13197 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=18.69;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1491,150,0 chrVII 13203 . T C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-1.347;QD=17.58;ReadPosRankSum=1.433;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1457,156,0 chrVII 13216 . T C 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.856;QD=18.22;ReadPosRankSum=1.692;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1618,168,0 chrVII 13261 . T A 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-1.535;QD=20.75;ReadPosRankSum=1.693;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1859,189,0 chrVII 13281 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=24.44;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2013,201,0 chrVII 13343 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=26.01;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2400,246,0 chrVII 13446 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.73;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2915,303,0 chrVII 13749 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=5.389;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.023;QD=22.98;ReadPosRankSum=1.690;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3838,411,0 chrVII 14737 . T A 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=114;Dels=0.00;FS=3.087;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.732;QD=24.54;ReadPosRankSum=1.702;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2830,264,0 chrVII 14981 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=133;Dels=0.00;FS=6.120;HaplotypeScore=7.5195;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.690;QD=22.92;ReadPosRankSum=2.807;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,127:133:99:3082,318,0 chrVII 15008 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.6177;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.42;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2890,291,0 chrVII 15244 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=179;Dels=0.00;FS=4.393;HaplotypeScore=18.2556;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.378;QD=25.29;ReadPosRankSum=1.712;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:4527,466,0 chrVII 15337 . A G 5120.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=25.22;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:5120,523,0 chrVII 15420 . C G 5420.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.5667;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.77;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5420,550,0 chrVII 15437 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=246;Dels=0.00;FS=5.927;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.482;QD=21.51;ReadPosRankSum=2.930;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:3,241:246:99:5291,562,0 chrVII 15512 . C T 5360.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.6486;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=22.91;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5360,541,0 chrVII 15518 . C T 4911.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=21.63;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4911,499,0 chrVII 15533 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-0.181;QD=19.95;ReadPosRankSum=1.717;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:4608,481,0 chrVII 15557 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=253;Dels=0.00;FS=3.561;HaplotypeScore=10.4116;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.069;QD=19.14;ReadPosRankSum=1.718;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:4843,522,0 chrVII 15596 . A G 6252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=289;Dels=0.00;FS=3.473;HaplotypeScore=15.2310;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.092;QD=21.63;ReadPosRankSum=1.720;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:1,286:289:99:6252,649,0 chrVII 15647 . T C 7711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=314;Dels=0.00;FS=2.738;HaplotypeScore=30.5354;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.446;QD=24.56;ReadPosRankSum=2.402;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:2,309:314:99:7711,811,0 chrVII 15689 . T C 8171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.761;DP=335;Dels=0.00;FS=7.910;HaplotypeScore=12.0724;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.313;QD=24.39;ReadPosRankSum=3.728;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:5,329:335:99:8171,847,0 chrVII 15770 . T C 6372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=304;Dels=0.00;FS=6.063;HaplotypeScore=22.1153;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.185;QD=20.96;ReadPosRankSum=2.977;SB=-3.974e+03 GT:AD:DP:GQ:PL 1/1:3,301:304:99:6372,685,0 chrVII 15803 . C T 8585.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=32.9423;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.46;SB=-5.112e+03 GT:AD:DP:GQ:PL 1/1:0,365:366:99:8585,862,0 chrVII 15848 . T C 10070.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=414;Dels=0.00;FS=6.289;HaplotypeScore=19.9082;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.247;QD=24.32;ReadPosRankSum=2.432;SB=-5.399e+03 GT:AD:DP:GQ:PL 1/1:2,410:414:99:10070,1072,0 chrVII 15887 . C T 9014.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.88;SB=-5.275e+03 GT:AD:DP:GQ:PL 1/1:0,393:394:99:9014,931,0 chrVII 15899 . T A 8100.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=9.5087;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.38;SB=-5.002e+03 GT:AD:DP:GQ:PL 1/1:0,362:362:99:8100,817,0 chrVII 16079 . T C 6451.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.4962;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.80;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6451,661,0 chrVII 16087 . T G 6031.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.3924;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=24.32;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6031,634,0 chrVII 16175 . A C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7765;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=25.40;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4267,442,0 chrVII 16202 . A C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=161;Dels=0.00;FS=5.475;HaplotypeScore=12.7576;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.403;QD=22.93;ReadPosRankSum=2.956;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3692,390,0 chrVII 16482 . T C 2089 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=20.48;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2122,219,0 chrVII 16485 . A G 2002 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=19.44;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2035,213,0 chrVII 16489 . T G 1902 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=18.65;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1935,204,0 chrVII 16503 . C T 1474 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;QD=18.20;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1507,150,0 chrVII 16504 . G T 1423 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=18.01;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1456,147,0 chrVII 16509 . T C 1557 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.150;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;MQRankSum=1.618;QD=17.11;ReadPosRankSum=1.694;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1590,165,0 chrVII 16556 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=21.99;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1990,204,0 chrVII 16563 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=101;Dels=0.02;FS=3.018;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=0.634;QD=19.68;ReadPosRankSum=2.350;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2021,216,0 chrVII 16596 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=21.90;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2573,261,0 chrVII 16612 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=19.97;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2369,249,0 chrVII 16638 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=110.0188;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=-0.814;QD=18.23;ReadPosRankSum=1.703;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2166,225,0 chrVII 16681 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5434;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-1.870;QD=20.02;ReadPosRankSum=2.410;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2495,264,0 chrVII 16762 . C A 2009 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=19.13;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2042,222,0 chrVII 16765 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=0.016;QD=18.83;ReadPosRankSum=1.369;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2010,210,0 chrVII 16807 . T A 1941 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=18.84;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1974,204,0 chrVII 16848 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=23.35;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2368,246,0 chrVII 16905 . T C 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.231;QD=14.26;ReadPosRankSum=1.687;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1131,123,0 chrVII 16946 . T A 1038 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=12.7714;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=14.22;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1071,108,0 chrVII 16997 . G A 524 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=27.1396;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=13.79;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:557,57,0 chrVII 17017 . C T 389 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.9713;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=16.91;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:422,42,0 chrVII 17039 . A G 301 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=18.81;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,14:16:36:334,36,0 chrVII 17111 . T C 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=-1.497;QD=25.49;ReadPosRankSum=1.674;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1537,159,0 chrVII 17166 . G T 1247 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=27.11;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1280,129,0 chrVII 17176 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;MQRankSum=0.192;QD=23.22;ReadPosRankSum=1.655;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1078,114,0 chrVII 17223 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=14.40;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1070,114,0 chrVII 17232 . T G 927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;MQRankSum=-0.119;QD=12.70;ReadPosRankSum=1.685;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:960,105,0 chrVII 17234 . A G 897 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;QD=12.29;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:930,102,0 chrVII 17240 . C A 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.36;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1084,114,0 chrVII 17260 . G A 1376 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=13.36;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1409,150,0 chrVII 17261 . C T 1254 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=12.17;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1287,141,0 chrVII 17265 . C T 1442 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=12.87;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1475,153,0 chrVII 17289 . G C 1462 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=12.50;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1495,156,0 chrVII 17299 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=11.87;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1374,138,0 chrVII 17314 . A C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.476;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=0.088;QD=11.35;ReadPosRankSum=1.703;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1372,144,0 chrVII 17321 . T A 1418 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=12.02;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1451,147,0 chrVII 17346 . A C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.403;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=-1.211;QD=10.60;ReadPosRankSum=1.701;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1231,132,0 chrVII 17359 . A G 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=1.545;QD=11.62;ReadPosRankSum=1.701;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1323,138,0 chrVII 17393 . T G 1906 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=13.81;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1939,219,0 chrVII 17401 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.83;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1941,201,0 chrVII 17412 . A G 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=4.085;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;MQRankSum=1.424;QD=14.41;ReadPosRankSum=1.708;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2152,228,0 chrVII 17428 . T A 2649 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=16.87;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2682,279,0 chrVII 17611 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=23.75;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3120,316,0 chrVII 17668 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;MQRankSum=-0.577;QD=23.44;ReadPosRankSum=1.696;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2283,240,0 chrVII 17711 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=19.27;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1247,123,0 chrVII 17713 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;MQRankSum=-1.341;QD=18.46;ReadPosRankSum=1.676;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1196,123,0 chrVII 17724 . C A 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=18.45;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1177,117,0 chrVII 17785 . G C 1280 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=18.55;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1313,135,0 chrVII 17798 . A T 1286 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=20.74;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1319,129,0 chrVII 17843 . A C 586 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=13.32;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:619,69,0 chrVII 17856 . G C 514 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=11.95;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:547,57,0 chrVII 17862 . T A 418 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=0.211;QD=10.20;ReadPosRankSum=1.648;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:48:451,48,0 chrVII 17866 . A C 332 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=1.111;QD=8.51;ReadPosRankSum=1.644;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:39:365,39,0 chrVII 17874 . T G 302 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=9.74;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:335,36,0 chrVII 17888 . T C 425 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=12.50;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:48:458,48,0 chrVII 17897 . A T 517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=37;Dels=0.00;FS=9.314;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;MQRankSum=0.705;QD=13.97;ReadPosRankSum=2.317;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:2,35:37:57:550,57,0 chrVII 17953 . A C 1267 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=24.37;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1300,138,0 chrVII 17958 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=26.04;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1413,144,0 chrVII 18008 . C A 1302 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=21.70;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1335,141,0 chrVII 18023 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=22.33;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1373,138,0 chrVII 18117 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=23.98;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1592,171,0 chrVII 18140 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=21.94;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1108,117,0 chrVII 18155 . T A 876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.547;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-0.604;QD=20.37;ReadPosRankSum=1.652;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:909,99,0 chrVII 18158 . T G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=45;Dels=0.00;FS=9.645;HaplotypeScore=34.3043;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=1.069;QD=18.53;ReadPosRankSum=2.844;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:3,42:45:93:867,93,0 chrVII 18197 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=25.16;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1165,120,0 chrVII 18215 . C G 1183 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=22.32;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1216,132,0 chrVII 18251 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;QD=20.55;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1410,156,0 chrVII 18261 . G A 1219 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=23.00;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1252,135,0 chrVII 18263 . C T 1180 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=22.69;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1213,132,0 chrVII 18271 . G A 1118 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=20.70;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1151,126,0 chrVII 18313 . A C 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;MQRankSum=-1.646;QD=18.85;ReadPosRankSum=1.646;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:90:787,90,0 chrVII 18315 . T G 723 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=18.54;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:756,87,0 chrVII 18342 . C T 591 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=19.06;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:624,72,0 chrVII 18346 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=18.66;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:630,69,0 chrVII 18380 . A G 432 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=13.50;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:465,54,0 chrVII 18382 . G T 424 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=13.25;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:457,54,0 chrVII 18388 . T C 437 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=12.14;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:470,57,0 chrVII 18389 . C G 410 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=11.39;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:54:443,54,0 chrVII 18418 . A G 408 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=9.71;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:441,54,0 chrVII 18425 . A G 387 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=9.21;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:51:420,51,0 chrVII 18426 . A T 419 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;QD=9.98;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:452,54,0 chrVII 18452 . A G 333 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=9.25;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:366,45,0 chrVII 18461 . T A 314 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=18.7472;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=9.24;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:347,42,0 chrVII 18516 . A T 494 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;QD=12.35;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:527,57,0 chrVII 18535 . C T 665 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=0;QD=12.09;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:698,75,0 chrVII 18545 . A T 734 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=12.66;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:767,84,0 chrVII 18561 . G T 1116 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=15.94;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1149,120,0 chrVII 18598 . A C 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=2.716;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=-1.267;QD=12.53;ReadPosRankSum=2.315;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:948,111,0 chrVII 18599 . C A 927 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=12.70;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:960,111,0 chrVII 18654 . T G 1514 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.69;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1547,165,0 chrVII 18690 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;MQRankSum=0.659;QD=21.66;ReadPosRankSum=1.683;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1571,186,0 chrVII 18699 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=22.59;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1524,171,0 chrVII 18729 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=22.98;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2101,219,0 chrVII 18748 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=21.65;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2198,234,0 chrVII 18909 . A G 2140 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=17.83;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2173,240,0 chrVII 18919 . C T 2021 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=18.54;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2054,210,0 chrVII 18921 . T C 1991 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.676;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;MQRankSum=0.055;QD=17.94;ReadPosRankSum=2.361;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2024,210,0 chrVII 18929 . T C 1955 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=16.43;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1988,204,0 chrVII 18954 . T A 3129 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=20.32;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3162,318,0 chrVII 18987 . C G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=21.22;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3925,432,0 chrVII 19051 . A T 4896.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2544;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=24.98;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4896,487,0 chrVII 19168 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=20.96;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3072,330,0 chrVII 19173 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=6.021;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;MQRankSum=1.509;QD=20.40;ReadPosRankSum=1.707;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2910,312,0 chrVII 19183 . G T 2781 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=20.15;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2814,279,0 chrVII 19186 . A T 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;MQRankSum=0.888;QD=20.02;ReadPosRankSum=2.342;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2776,279,0 chrVII 19222 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=21.09;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3238,333,0 chrVII 19226 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=22.39;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3292,334,0 chrVII 19266 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=25.78;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3455,360,0 chrVII 19332 . A G 2120 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=21.63;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2153,231,0 chrVII 19374 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=22.31;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,150,0 chrVII 19378 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=21.63;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1331,144,0 chrVII 19402 . A G 632 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=14.70;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:665,75,0 chrVII 19409 . A G 654 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=16.77;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:687,78,0 chrVII 19443 . C T 572 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=35.0014;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.05;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:605,60,0 chrVII 19445 . A G 524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=35.0014;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.101;QD=13.79;ReadPosRankSum=2.317;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:60:557,60,0 chrVII 19473 . T G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;MQRankSum=-1.658;QD=9.51;ReadPosRankSum=1.695;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:936,99,0 chrVII 19481 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=10.31;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1157,123,0 chrVII 19530 . G C 2041 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=15.70;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2074,216,0 chrVII 19575 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.29;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1304,138,0 chrVII 19599 . T C 793 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=13.00;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:826,93,0 chrVII 19600 . C A 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=0.426;QD=14.07;ReadPosRankSum=0.880;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:891,99,0 chrVII 19636 . T C 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=84;Dels=0.00;FS=4.933;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.334;QD=16.65;ReadPosRankSum=3.182;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:4,80:84:99:1432,153,0 chrVII 19660 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.160;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-0.763;QD=18.87;ReadPosRankSum=1.673;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2260,240,0 chrVII 19669 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=19.20;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2664,282,0 chrVII 19681 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.680;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=-1.591;QD=20.86;ReadPosRankSum=1.709;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3099,324,0 chrVII 19896 . A G 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.626;QD=21.35;ReadPosRankSum=1.679;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1421,150,0 chrVII 20174 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=26.81;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2017,210,0 chrVII 20382 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4499;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.34;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4556,460,0 chrVII 21020 . T G 242 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=2.20;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:36:275,36,0 chrVII 21021 . C A 175.01 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=1.68;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:27:208,27,0 chrVII 21023 . G A 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=1.05;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:18:140,18,0 chrVII 21024 . A C 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=1.05;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:18:140,18,0 chrVII 21025 . A C 311 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=3.05;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:45:344,45,0 chrVII 21035 . G A 1867 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=14.36;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1900,195,0 chrVII 21039 . A C 1718 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=13.53;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1751,183,0 chrVII 21041 . A G 1738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;MQRankSum=-0.650;QD=13.58;ReadPosRankSum=1.678;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1771,186,0 chrVII 21088 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=17.55;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2385,237,0 chrVII 21096 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=16.55;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2284,231,0 chrVII 21172 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=24.22;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3657,381,0 chrVII 21218 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=21.92;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3124,336,0 chrVII 21225 . T C 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=125;Dels=0.00;FS=2.623;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;MQRankSum=0.410;QD=20.01;ReadPosRankSum=2.370;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2534,282,0 chrVII 21241 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=22.91;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2988,321,0 chrVII 21271 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=23.16;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3613,384,0 chrVII 21318 . C A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=26.04;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4921,499,0 chrVII 21409 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.5272;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;MQRankSum=-0.685;QD=22.05;ReadPosRankSum=1.712;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3792,405,0 chrVII 21412 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.01;FS=3.086;HaplotypeScore=4.6685;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=0.330;QD=20.65;ReadPosRankSum=1.692;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3614,396,0 chrVII 21445 . T G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=4.237;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;MQRankSum=-0.080;QD=18.26;ReadPosRankSum=1.705;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2461,264,0 chrVII 21464 . C A 2267 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=17.99;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2300,240,0 chrVII 21492 . G A 2423 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;MQRankSum=1.366;QD=19.70;ReadPosRankSum=-1.450;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2456,231,0 chrVII 21493 . A T 2333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;MQRankSum=-2.429;QD=19.44;ReadPosRankSum=2.409;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2366,258,0 chrVII 21497 . A G 2563 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=19.27;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2596,270,0 chrVII 21504 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=20.23;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2723,276,0 chrVII 21513 . G C 2512 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=575.0724;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=19.94;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2545,261,0 chrVII 21538 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=8.573;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;MQRankSum=-1.107;QD=15.12;ReadPosRankSum=1.588;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2211,246,0 chrVII 21565 . C T 2036 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;QD=13.95;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2069,213,0 chrVII 21569 . G A 1839 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=13.14;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1872,192,0 chrVII 21574 . G A 1724 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=12.23;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1757,180,0 chrVII 21579 . A T 1587 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;MQRankSum=0.037;QD=11.42;ReadPosRankSum=1.707;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:1620,168,0 chrVII 21586 . T A 1393 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=10.47;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1426,147,0 chrVII 21602 . A G 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=129;Dels=0.00;FS=5.270;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=0.048;QD=9.16;ReadPosRankSum=3.389;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:4,124:129:99:1214,135,0 chrVII 21626 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=13.60;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1733,180,0 chrVII 21658 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=13.13;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2002,204,0 chrVII 21694 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=11.70;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,166:168:99:1999,204,0 chrVII 21704 . G A 1440 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=9.66;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1473,162,0 chrVII 21705 . T C 1532 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;MQRankSum=-1.119;QD=10.42;ReadPosRankSum=1.709;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1565,162,0 chrVII 21710 . G A 1414 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=9.30;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1447,162,0 chrVII 21712 . T A 1666 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;MQRankSum=-2.434;QD=10.61;ReadPosRankSum=2.418;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,155:157:99:1699,171,0 chrVII 21719 . T G 1506 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=9.47;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1539,168,0 chrVII 21722 . T A 1645 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;MQRankSum=-1.627;QD=9.97;ReadPosRankSum=1.711;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,164:165:99:1678,168,0 chrVII 21919 . G C 4884.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.0177;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=21.52;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4884,511,0 chrVII 22018 . A T 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;MQRankSum=-1.131;QD=19.68;ReadPosRankSum=1.697;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1962,210,0 chrVII 22028 . G A 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=21.13;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1977,195,0 chrVII 22031 . C T 1976 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=21.71;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2009,198,0 chrVII 22035 . G A 1972 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=21.43;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2005,198,0 chrVII 22039 . A G 1811 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=20.82;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1844,195,0 chrVII 22111 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.73;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1572,165,0 chrVII 22192 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=14.91;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1032,102,0 chrVII 22195 . A T 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=7.172;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-0.925;QD=13.73;ReadPosRankSum=1.685;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1035,105,0 chrVII 22309 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6936;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=28.01;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3030,301,0 chrVII 22661 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.3932;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.42;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5109,547,0 chrVII 22985 . G A 7267.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3715;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.41;SB=-4.092e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7267,715,0 chrVII 23122 . C T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.8820;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=22.57;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5620,568,0 chrVII 23134 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=228;Dels=0.00;FS=9.277;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.657;QD=20.21;ReadPosRankSum=2.428;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:4609,498,0 chrVII 23140 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.9945;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.61;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4927,493,0 chrVII 23215 . G T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.17;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4340,460,0 chrVII 23231 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=22.05;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4586,454,0 chrVII 23244 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=3.773;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-1.445;QD=20.92;ReadPosRankSum=1.664;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4309,445,0 chrVII 23383 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9431;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.01;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3612,378,0 chrVII 23473 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=25.13;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3292,328,0 chrVII 23602 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.00;FS=2.996;HaplotypeScore=11.0091;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.118;QD=21.86;ReadPosRankSum=2.413;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3050,313,0 chrVII 23877 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.91;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1830,189,0 chrVII 23885 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=23.56;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1941,195,0 chrVII 23922 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.70;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2058,207,0 chrVII 24075 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0256;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.39;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3405,343,0 chrVII 24525 . T C 6271.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.4723;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:6271,655,0 chrVII 25442 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3088,307,0 chrVII 25663 . A G 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=3.731;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.387;QD=23.41;ReadPosRankSum=1.691;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2046,210,0 chrVII 26299 . A G 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=219;Dels=0.00;FS=3.361;HaplotypeScore=15.7310;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.716;QD=24.55;ReadPosRankSum=-0.925;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5376,556,0 chrVII 26801 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.65;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3451,343,0 chrVII 27002 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.072;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.918;QD=23.94;ReadPosRankSum=1.711;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3998,432,0 chrVII 28371 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.23;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3803,376,0 chrVII 28799 . C G 2735 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.05;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2768,285,0 chrVII 29361 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.17;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2852,283,0 chrVII 29398 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.60;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2700,268,0 chrVII 33274 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.22;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3191,319,0 chrVII 33393 . A T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3970,397,0 chrVII 33441 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.99;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3951,394,0 chrVII 34423 . C G 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.43;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3149,333,0 chrVII 34691 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.490;QD=21.79;ReadPosRankSum=2.228;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2931,306,0 chrVII 34702 . C A 2673 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.4833;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.09;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2706,270,0 chrVII 34805 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.86;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2674,267,0 chrVII 34808 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=3.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.963;QD=19.08;ReadPosRankSum=2.392;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2514,261,0 chrVII 35488 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.191;QD=24.48;ReadPosRankSum=1.696;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2383,246,0 chrVII 35543 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.415;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.001;QD=25.94;ReadPosRankSum=1.694;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,89:93:99:2445,252,0 chrVII 36448 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3276,339,0 chrVII 39985 . A C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3259;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.48;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4162,450,0 chrVII 41968 . G A 5259.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:5259,520,0 chrVII 43204 . A T 193.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.639;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=10.16;ReadPosRankSum=1.552;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:24:226,24,0 chrVII 43308 . T G 1956 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8652;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.40;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1989,207,0 chrVII 43400 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.71;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2652,279,0 chrVII 43794 . G C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.10;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3404,352,0 chrVII 43798 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.55;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3382,334,0 chrVII 44099 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.12;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3543,361,0 chrVII 44308 . A C 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8776;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.441;QD=24.11;ReadPosRankSum=1.653;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3192,327,0 chrVII 44796 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.65;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3968,423,0 chrVII 44898 . C T 5109.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5109,514,0 chrVII 44995 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.98;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3504,358,0 chrVII 45002 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.04;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3598,355,0 chrVII 45345 . T A 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=11.5677;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.015;QD=19.44;ReadPosRankSum=2.388;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1588,159,0 chrVII 45371 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.16;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1766,189,0 chrVII 45399 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.50;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2635,270,0 chrVII 45537 . C A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=27.28;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4256,418,0 chrVII 45565 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.88;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3806,376,0 chrVII 45593 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.98;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3722,370,0 chrVII 45639 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.61;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4179,450,0 chrVII 45669 . A T 4983.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.1623;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.92;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4983,505,0 chrVII 45694 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=2.650;HaplotypeScore=4.6883;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.516;QD=24.91;ReadPosRankSum=2.398;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4782,505,0 chrVII 45723 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.47;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3826,402,0 chrVII 46050 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.667;QD=24.32;ReadPosRankSum=2.315;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2708,282,0 chrVII 46166 . T A 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=5.509;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.480;QD=25.48;ReadPosRankSum=1.660;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2479,246,0 chrVII 46197 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.25;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1973,204,0 chrVII 46524 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=7.639;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.900;QD=22.60;ReadPosRankSum=2.411;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2903,309,0 chrVII 46545 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.288;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.238;QD=22.40;ReadPosRankSum=1.698;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2340,249,0 chrVII 46634 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2481,252,0 chrVII 46890 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2521,270,0 chrVII 47968 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=4.064;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.086;QD=24.78;ReadPosRankSum=1.675;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4486,486,0 chrVII 47998 . A G 5674.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.46;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5674,598,0 chrVII 51531 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.370;QD=23.56;ReadPosRankSum=1.687;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3604,384,0 chrVII 51683 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2246,234,0 chrVII 52589 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.08;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2526,264,0 chrVII 52610 . A G 279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.743;DP=114;Dels=0.00;FS=4.226;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.909;QD=2.45;ReadPosRankSum=-5.316;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:86,27:114:39:312,39,0 chrVII 52732 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.236;QD=21.36;ReadPosRankSum=1.706;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2874,303,0 chrVII 52740 . T A 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.403;QD=18.88;ReadPosRankSum=1.661;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2808,294,0 chrVII 52959 . T C 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=231;Dels=0.00;FS=2.951;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.717;QD=23.83;ReadPosRankSum=2.418;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5505,568,0 chrVII 53213 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=233;Dels=0.01;FS=9.132;HaplotypeScore=69.4893;MLEAC=2;MLEAF=1.00;MQ=61.08;MQ0=0;MQRankSum=1.405;QD=20.57;ReadPosRankSum=2.428;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,226:230:99:4792,502,0 chrVII 53416 . T G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.013;QD=21.74;ReadPosRankSum=1.694;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3979,426,0 chrVII 53419 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.871;QD=20.91;ReadPosRankSum=1.713;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3869,417,0 chrVII 53700 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.58;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3583,352,0 chrVII 53702 . T A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.11;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3369,354,0 chrVII 54324 . G C 3447.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.62;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3447,366,0 chrVII 54455 . C G 4385.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.3330;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.23;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4385,460,0 chrVII 54561 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=200;Dels=0.00;FS=6.676;HaplotypeScore=17.3413;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.436;QD=22.95;ReadPosRankSum=2.400;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4589,489,0 chrVII 54816 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9355;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=22.10;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3956,415,0 chrVII 54821 . T G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8771;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.506;QD=21.93;ReadPosRankSum=1.713;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3947,423,0 chrVII 54879 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.74;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4695,484,0 chrVII 54933 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.94;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4543,486,0 chrVII 55015 . G T 4423.01 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.37;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4423,436,0 chrVII 55016 . C T 4260.01 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.78;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4260,436,0 chrVII 55023 . C T 4164.01 SnpCluster AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.3435;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.01;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4164,409,0 chrVII 55107 . G A 5331.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.8313;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.38;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5331,532,0 chrVII 55152 . C T 6134.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.4215;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.04;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:6134,607,0 chrVII 55299 . G A 5663.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.40;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5663,571,0 chrVII 55419 . T C 5919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=234;Dels=0.00;FS=6.061;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.876;QD=25.29;ReadPosRankSum=2.858;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5919,613,0 chrVII 55455 . C A 5501.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.76;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5501,577,0 chrVII 55464 . G A 5538.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=9.9082;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.85;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:5538,592,0 chrVII 55850 . G A 5346.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=20.3800;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.41;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5346,523,0 chrVII 55935 . C G 4712.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.92;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4712,484,0 chrVII 56041 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.78;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3519,352,0 chrVII 56091 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.88;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2706,273,0 chrVII 56095 . A T 2674 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.89;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2707,268,0 chrVII 56199 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.69;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1877,186,0 chrVII 56448 . A C 5332.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.57;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5332,550,0 chrVII 57195 . T C 5871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=257;Dels=0.00;FS=6.980;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.594;QD=22.84;ReadPosRankSum=2.421;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:2,253:257:99:5871,628,0 chrVII 59213 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2495,246,0 chrVII 59379 . T C 2225 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2258,237,0 chrVII 60253 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.64;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2455,255,0 chrVII 60729 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.203;QD=24.15;ReadPosRankSum=1.576;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2714,288,0 chrVII 60770 . C A 3034 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3067,304,0 chrVII 61349 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.93;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4214,427,0 chrVII 61936 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=21.96;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1636,174,0 chrVII 64305 . A G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=5.923;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.879;QD=24.72;ReadPosRankSum=2.935;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2703,285,0 chrVII 64632 . A T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.77;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3468,360,0 chrVII 66126 . T G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.567;QD=24.62;ReadPosRankSum=1.705;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3135,330,0 chrVII 66501 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7042;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.25;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4141,421,0 chrVII 66795 . C T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.24;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4619,460,0 chrVII 67228 . A C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=2.748;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.573;QD=21.74;ReadPosRankSum=2.420;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3587,373,0 chrVII 67634 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.7008;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.98;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4721,469,0 chrVII 68008 . C A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.19;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4269,421,0 chrVII 68133 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.719;QD=24.70;ReadPosRankSum=2.419;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3952,418,0 chrVII 68203 . T C 5447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7647;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.630;QD=26.06;ReadPosRankSum=2.966;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:5447,577,0 chrVII 68542 . T C 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=3.522;HaplotypeScore=19.8927;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.722;QD=23.53;ReadPosRankSum=1.684;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5154,538,0 chrVII 69214 . A T 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=134;Dels=0.00;FS=5.830;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.196;QD=23.30;ReadPosRankSum=2.842;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3155,324,0 chrVII 69249 . G T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4313;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=23.34;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3641,384,0 chrVII 69315 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6615;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.38;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2092,225,0 chrVII 69404 . A T 477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.217;DP=80;Dels=0.00;FS=10.966;HaplotypeScore=69.0690;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;MQRankSum=1.371;QD=5.96;ReadPosRankSum=1.217;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:54:510,54,0 chrVII 69424 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=11.04;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:894,93,0 chrVII 70474 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=3.690;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.944;QD=25.27;ReadPosRankSum=1.708;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3714,379,0 chrVII 70531 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=3.021;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.594;QD=21.26;ReadPosRankSum=2.381;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3848,408,0 chrVII 70537 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.190;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.851;QD=21.02;ReadPosRankSum=1.692;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3637,387,0 chrVII 70633 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3717,388,0 chrVII 70861 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=7.598;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.009;QD=23.50;ReadPosRankSum=2.395;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3252,345,0 chrVII 71410 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.0700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3533,352,0 chrVII 71797 . A T 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=211;Dels=0.00;FS=6.083;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.195;QD=25.89;ReadPosRankSum=2.900;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:5463,541,0 chrVII 72345 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.190;QD=25.75;ReadPosRankSum=1.687;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3991,417,0 chrVII 72738 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2690,279,0 chrVII 72788 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.87;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2683,291,0 chrVII 72874 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.72;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2727,276,0 chrVII 73077 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.2250;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=24.27;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3980,420,0 chrVII 73286 . A G 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=226;Dels=0.00;FS=6.764;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.755;QD=23.16;ReadPosRankSum=2.395;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5235,538,0 chrVII 73336 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.15;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3703,364,0 chrVII 73362 . G T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.87;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3271,328,0 chrVII 73438 . C T 5678.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.26;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5678,595,0 chrVII 73453 . A G 5883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.1747;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.522;QD=23.63;ReadPosRankSum=1.704;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5883,610,0 chrVII 73493 . C G 4611.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=22.17;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4611,481,0 chrVII 73615 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8998;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.213;QD=21.29;ReadPosRankSum=3.311;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3534,369,0 chrVII 73684 . A G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.019;QD=24.10;ReadPosRankSum=1.664;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2491,258,0 chrVII 74133 . G A 1015 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=23.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1048,108,0 chrVII 74141 . A T 944 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;MQRankSum=-1.019;QD=20.98;ReadPosRankSum=2.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,43:45:96:977,96,0 chrVII 74173 . A T 754 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.854;DP=91;Dels=0.00;FS=261.235;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;MQRankSum=0.698;QD=8.29;ReadPosRankSum=-8.164;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:50,41:91:39:787,39,0 chrVII 74365 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=25.97;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3019,312,0 chrVII 74917 . C T 6559.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=25.62;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6559,655,0 chrVII 74942 . T G 6119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.856;QD=22.83;ReadPosRankSum=1.706;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,264:268:99:6119,643,0 chrVII 74964 . C T 5822.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.64;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5822,580,0 chrVII 74983 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=270;Dels=0.00;FS=4.446;HaplotypeScore=10.9120;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.091;QD=20.17;ReadPosRankSum=1.706;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:5446,600,0 chrVII 75064 . G T 7092.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=25.51;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:7092,700,0 chrVII 75209 . T C 6223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=257;Dels=0.00;FS=8.157;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.111;QD=24.21;ReadPosRankSum=2.421;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,253:257:99:6223,649,0 chrVII 75261 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=23.61;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4604,457,0 chrVII 75286 . C G 4415.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=20.83;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4415,468,0 chrVII 75292 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=228;Dels=0.00;FS=8.007;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.738;QD=19.29;ReadPosRankSum=2.417;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4399,477,0 chrVII 75341 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=242;Dels=0.00;FS=2.837;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.657;QD=19.87;ReadPosRankSum=2.419;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:4808,496,0 chrVII 75351 . A T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=19.02;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4641,484,0 chrVII 75358 . C G 4553.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.89;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:4553,481,0 chrVII 75428 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.2879;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.082;QD=23.10;ReadPosRankSum=1.667;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4943,514,0 chrVII 76021 . A T 6079.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.3026;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=27.14;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6079,595,0 chrVII 76058 . G A 6124.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.64;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6124,613,0 chrVII 76149 . G A 6646.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.66;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6646,658,0 chrVII 76247 . A G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=215;Dels=0.00;FS=3.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.256;QD=24.55;ReadPosRankSum=2.392;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5278,535,0 chrVII 76490 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.11;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3520,375,0 chrVII 76512 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=23.76;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3350,331,0 chrVII 76519 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.85;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3072,310,0 chrVII 76600 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.96;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2069,201,0 chrVII 76663 . G C 1731 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=17.14;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1764,189,0 chrVII 76882 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.521;QD=24.73;ReadPosRankSum=2.310;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3908,406,0 chrVII 76989 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.85;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4365,454,0 chrVII 77025 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.1438;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.12;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4462,463,0 chrVII 77052 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.77;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4223,439,0 chrVII 77061 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.48;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4248,424,0 chrVII 77474 . C G 4541.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4541,475,0 chrVII 77580 . G A 5383.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.6346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5383,565,0 chrVII 77983 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.35;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1762,183,0 chrVII 78029 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.26;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:3059,309,0 chrVII 78636 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3944,385,0 chrVII 78859 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.498;QD=21.44;ReadPosRankSum=1.637;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1598,165,0 chrVII 78965 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=23.85;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1726,171,0 chrVII 78970 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=22.74;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1534,162,0 chrVII 78986 . A C 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.9290;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;MQRankSum=-1.444;QD=19.42;ReadPosRankSum=1.660;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:965,102,0 chrVII 79032 . A G 282 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=11.28;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:315,33,0 chrVII 79107 . T C 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.404;QD=26.49;ReadPosRankSum=1.685;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1993,207,0 chrVII 79268 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.21;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2745,291,0 chrVII 79504 . T G 5126.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5126,538,0 chrVII 79586 . C A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.38;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4979,523,0 chrVII 79663 . G A 5350.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.4494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5350,562,0 chrVII 80122 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=131;Dels=0.00;FS=6.468;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.788;QD=25.42;ReadPosRankSum=2.412;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3330,343,0 chrVII 80305 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.671;QD=24.21;ReadPosRankSum=1.702;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2817,294,0 chrVII 80643 . T C 112.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-2.341;QD=2.44;ReadPosRankSum=2.341;SB=-8.927e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:15:145,15,0 chrVII 80653 . G A 385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.314;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=12.4771;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;MQRankSum=0.777;QD=6.53;ReadPosRankSum=-1.254;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,57:59:42:418,42,0 chrVII 80875 . C A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.1348;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=25.63;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3819,379,0 chrVII 80909 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.399;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.237;QD=24.52;ReadPosRankSum=1.658;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3458,363,0 chrVII 80976 . T A 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.366;QD=26.10;ReadPosRankSum=1.635;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3706,385,0 chrVII 81268 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.4925;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.32;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4281,424,0 chrVII 81306 . T A 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.115;QD=21.76;ReadPosRankSum=1.717;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4897,505,0 chrVII 81381 . G A 6233.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.34;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:6233,622,0 chrVII 82731 . G C 5702.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.40;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5702,589,0 chrVII 82858 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=177;Dels=0.00;FS=2.801;HaplotypeScore=13.9969;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.639;QD=23.84;ReadPosRankSum=2.393;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:4220,439,0 chrVII 84203 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.234;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.958;QD=25.32;ReadPosRankSum=1.713;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4532,472,0 chrVII 84308 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.41;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2631,282,0 chrVII 84678 . A T 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.576;QD=25.22;ReadPosRankSum=1.670;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2832,277,0 chrVII 84714 . T A 2034 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.38;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2067,210,0 chrVII 84785 . A G 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=38;Dels=0.00;FS=8.451;HaplotypeScore=10.1292;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.634;QD=18.08;ReadPosRankSum=1.634;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,34:38:78:720,78,0 chrVII 85120 . A G 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=7.756;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.403;QD=26.09;ReadPosRankSum=2.422;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4722,493,0 chrVII 85190 . A C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.46;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3474,369,0 chrVII 85238 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.43;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4104,415,0 chrVII 85271 . C T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.38;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4900,484,0 chrVII 85337 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9606;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.95;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4641,487,0 chrVII 85539 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.90;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3635,358,0 chrVII 85628 . C T 5513.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=18.8689;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.00;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5513,553,0 chrVII 86297 . C T 4505.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.50;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4505,457,0 chrVII 86321 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.66;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4290,442,0 chrVII 86411 . A C 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.8487;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.384;QD=24.21;ReadPosRankSum=1.701;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:5398,565,0 chrVII 86533 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.73;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4500,477,0 chrVII 86574 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.88;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4155,427,0 chrVII 86645 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.03;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3604,361,0 chrVII 86720 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3620,376,0 chrVII 86891 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.38;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2394,246,0 chrVII 87038 . G T 2569 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6058;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.75;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2602,264,0 chrVII 87051 . C A 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9959;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.205;QD=18.13;ReadPosRankSum=0.402;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2553,252,0 chrVII 87147 . G A 4635.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1726;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.79;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4635,466,0 chrVII 87769 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.51;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1843,189,0 chrVII 87833 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.46;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2679,279,0 chrVII 87882 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=65.5143;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.95;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2284,231,0 chrVII 88301 . T C 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.549;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.167;QD=23.23;ReadPosRankSum=1.679;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4599,475,0 chrVII 88664 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.17;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2628,270,0 chrVII 88681 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.28;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2617,270,0 chrVII 88718 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=3.041;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-2.088;QD=22.35;ReadPosRankSum=2.382;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2469,261,0 chrVII 88913 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.50;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2850,286,0 chrVII 89311 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.32;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2832,285,0 chrVII 89339 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.31;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2309,231,0 chrVII 90444 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.378;QD=21.35;ReadPosRankSum=1.707;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2979,315,0 chrVII 91031 . C T 5862.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5862,580,0 chrVII 91652 . G T 4761.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.0275;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.60;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4761,478,0 chrVII 91958 . T C 7865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=344;Dels=0.00;FS=2.708;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.702;QD=22.86;ReadPosRankSum=2.335;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:2,342:344:99:7865,838,0 chrVII 91977 . G A 8342.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=15.0899;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.37;SB=-4.153e+03 GT:AD:DP:GQ:PL 1/1:0,353:357:99:8342,821,0 chrVII 92135 . C T 10169.01 filter AC=2;AF=1.00;AN=2;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=27.5226;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.61;SB=-5.028e+03 GT:AD:DP:GQ:PL 1/1:0,394:397:99:10169,1019,0 chrVII 92390 . A T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=15.3614;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.43;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3678,373,0 chrVII 92820 . G A 5471.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.3524;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.08;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5471,571,0 chrVII 92844 . A T 6426.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.81;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6426,640,0 chrVII 92892 . T C 5954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=255;Dels=0.00;FS=3.000;HaplotypeScore=23.4531;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.498;QD=23.35;ReadPosRankSum=2.372;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5954,643,0 chrVII 93397 . G A 5032.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3321;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=25.16;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5032,529,0 chrVII 95130 . G T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.59;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3430,340,0 chrVII 95396 . G C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.18;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4010,412,0 chrVII 95510 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.179;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.097;QD=20.04;ReadPosRankSum=1.693;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1837,192,0 chrVII 95788 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=24.82;ReadPosRankSum=1.706;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3301,343,0 chrVII 96337 . T C 6724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=17.5322;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.202;QD=21.83;ReadPosRankSum=1.721;SB=-3.859e+03 GT:AD:DP:GQ:PL 1/1:1,307:308:99:6724,697,0 chrVII 96869 . G A 5230.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5230,550,0 chrVII 97616 . T C 5975.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.9969;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.39;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5975,628,0 chrVII 97982 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.63;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4802,499,0 chrVII 98012 . T A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.66;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4850,525,0 chrVII 98090 . C A 5014.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.7528;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.54;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5014,496,0 chrVII 98124 . G T 5500.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=24.8699;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.12;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5500,568,0 chrVII 98211 . A C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.091;HaplotypeScore=10.1651;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.283;QD=20.63;ReadPosRankSum=1.668;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4497,483,0 chrVII 98228 . G T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.14;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4143,421,0 chrVII 98329 . G A 5624.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.30;SB=-3.918e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5624,550,0 chrVII 98330 . C T 5335.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.06;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5335,553,0 chrVII 98387 . T G 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=3.409;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=1.352;QD=21.08;ReadPosRankSum=1.702;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4828,508,0 chrVII 98456 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=24.82;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5039,505,0 chrVII 98492 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=21.94;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3972,415,0 chrVII 98507 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=191;Dels=0.00;FS=5.190;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.151;QD=20.41;ReadPosRankSum=3.387;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:3898,417,0 chrVII 98592 . A C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;DP=163;Dels=0.00;FS=2.793;HaplotypeScore=9.5071;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=0.791;QD=19.80;ReadPosRankSum=2.404;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3260,307,0 chrVII 98608 . G C 2404 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=118.8321;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=17.42;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2437,261,0 chrVII 98668 . A C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=114;Dels=0.00;FS=2.915;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.399;QD=16.15;ReadPosRankSum=2.407;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1874,198,0 chrVII 98671 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.23;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1818,192,0 chrVII 98756 . A C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.718;QD=23.60;ReadPosRankSum=1.704;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2936,315,0 chrVII 98879 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=27.07;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3173,316,0 chrVII 98918 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=26.72;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3661,361,0 chrVII 98947 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.54;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3806,399,0 chrVII 99292 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1510;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.045;QD=24.35;ReadPosRankSum=0.727;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3223,328,0 chrVII 99303 . T A 2913 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.0586;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.30;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2946,292,0 chrVII 99361 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.56;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2537,267,0 chrVII 99508 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.66;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2992,303,0 chrVII 99853 . T C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=129;Dels=0.00;FS=3.295;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.732;QD=21.78;ReadPosRankSum=1.705;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2843,300,0 chrVII 100110 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=3.032;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.047;QD=24.04;ReadPosRankSum=2.389;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2966,306,0 chrVII 100285 . C G 2085 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.91;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2118,225,0 chrVII 100351 . T A 2336 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2369,246,0 chrVII 100684 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=153;Dels=0.00;FS=9.379;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.046;QD=23.99;ReadPosRankSum=2.902;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3671,399,0 chrVII 100717 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.236;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.439;QD=24.80;ReadPosRankSum=1.710;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3943,406,0 chrVII 100756 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.09;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3989,421,0 chrVII 100825 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=25.48;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3924,409,0 chrVII 100858 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.484;QD=23.94;ReadPosRankSum=-1.065;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3854,381,0 chrVII 100904 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=162;Dels=0.00;FS=3.036;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.465;QD=23.03;ReadPosRankSum=2.343;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3731,390,0 chrVII 101050 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.279;QD=24.07;ReadPosRankSum=1.527;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:3162,330,0 chrVII 101053 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=8.072;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.208;QD=23.29;ReadPosRankSum=2.395;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3201,336,0 chrVII 101815 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.6701;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.677;QD=27.23;ReadPosRankSum=1.714;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:5119,532,0 chrVII 101923 . T C 4349.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.53;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4349,454,0 chrVII 101935 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.660;QD=23.56;ReadPosRankSum=1.696;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4547,466,0 chrVII 102109 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.55;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3731,390,0 chrVII 102167 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.20;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2906,294,0 chrVII 102510 . G A 761 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=13.59;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:87:794,87,0 chrVII 102955 . C G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.5091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,150:157:99:3440,360,0 chrVII 103278 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6413;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.60;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3131,310,0 chrVII 103776 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.47;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3974,412,0 chrVII 103842 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.41;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3171,316,0 chrVII 103858 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.73;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2638,273,0 chrVII 103929 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=149;Dels=0.00;FS=2.988;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.025;QD=21.12;ReadPosRankSum=2.416;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3180,336,0 chrVII 104051 . G T 409.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.617;DP=121;Dels=0.00;FS=181.084;HaplotypeScore=10.4539;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=0.880;QD=3.38;ReadPosRankSum=-7.872;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,39:121:99:439,0,1176 chrVII 104154 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.229;QD=22.45;ReadPosRankSum=1.704;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2839,303,0 chrVII 104271 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.105;QD=24.05;ReadPosRankSum=1.699;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2558,279,0 chrVII 104466 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.96;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2651,273,0 chrVII 104478 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=129;Dels=0.00;FS=5.781;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.149;QD=22.09;ReadPosRankSum=2.930;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2883,297,0 chrVII 104541 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.136;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.410;QD=24.89;ReadPosRankSum=1.707;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3484,364,0 chrVII 104760 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=25.50;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3468,346,0 chrVII 104775 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.43;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3469,349,0 chrVII 104960 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.085;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.705;QD=23.73;ReadPosRankSum=1.673;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2857,300,0 chrVII 105018 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.80;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3348,331,0 chrVII 105105 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=145;Dels=0.00;FS=3.041;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.246;QD=23.61;ReadPosRankSum=2.415;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3424,363,0 chrVII 105177 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=28.09;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3399,337,0 chrVII 105270 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.5664;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.039;QD=24.41;ReadPosRankSum=0.658;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3182,327,0 chrVII 105393 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.16;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3335,340,0 chrVII 105414 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.51;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3431,352,0 chrVII 105492 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.71;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4242,424,0 chrVII 105525 . G A 4941.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.14;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4941,493,0 chrVII 105549 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.970;QD=24.93;ReadPosRankSum=1.715;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4986,517,0 chrVII 105594 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=192;Dels=0.00;FS=6.046;HaplotypeScore=10.9299;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.868;QD=21.47;ReadPosRankSum=2.879;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4122,435,0 chrVII 106068 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.7031;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.24;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4224,421,0 chrVII 106214 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.010;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.926;QD=22.59;ReadPosRankSum=1.712;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3953,415,0 chrVII 106314 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3284,331,0 chrVII 106438 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.41;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4116,427,0 chrVII 106548 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3600,361,0 chrVII 106704 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.063;QD=23.45;ReadPosRankSum=1.711;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3916,417,0 chrVII 106751 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4219,418,0 chrVII 106941 . T G 4926.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4926,517,0 chrVII 107169 . C T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4538,454,0 chrVII 107461 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.39;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3860,408,0 chrVII 107657 . A G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.017;DP=72;Dels=0.00;FS=5.395;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=2.683;QD=21.46;ReadPosRankSum=3.325;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:4,65:72:99:1578,165,0 chrVII 107757 . T G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.289;QD=23.99;ReadPosRankSum=1.692;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2096,225,0 chrVII 107795 . A C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.578;QD=22.00;ReadPosRankSum=1.501;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2013,225,0 chrVII 107810 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.64;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1981,201,0 chrVII 107814 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=20.68;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1853,192,0 chrVII 108005 . A G 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.248;QD=23.65;ReadPosRankSum=2.388;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1925,204,0 chrVII 108238 . G C 2415 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.25;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2448,252,0 chrVII 108343 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=25.23;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3264,336,0 chrVII 108349 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=23.19;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3048,324,0 chrVII 108369 . A C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.841;QD=19.69;ReadPosRankSum=1.681;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,135:142:99:2829,300,0 chrVII 108374 . A C 2941 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.31;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2974,312,0 chrVII 108464 . G A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.39;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4750,475,0 chrVII 108556 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.51;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4591,478,0 chrVII 108797 . G A 5806.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.5382;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.58;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5806,607,0 chrVII 109424 . T G 5872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.466;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.922;QD=25.31;ReadPosRankSum=1.702;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5872,601,0 chrVII 109520 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=26.23;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4013,400,0 chrVII 109762 . G T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=26.13;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3371,337,0 chrVII 109776 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.7012;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.513;QD=21.68;ReadPosRankSum=1.704;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,124:130:99:2852,297,0 chrVII 109784 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.24;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2497,264,0 chrVII 109841 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.81;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2541,252,0 chrVII 109972 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.07;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3263,345,0 chrVII 110008 . T A 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.116;QD=24.09;ReadPosRankSum=1.703;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2900,286,0 chrVII 110083 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3808,379,0 chrVII 110518 . A T 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=7.529;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.285;QD=27.71;ReadPosRankSum=2.364;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4793,475,0 chrVII 110740 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=22.54;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2467,261,0 chrVII 111592 . G T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.85;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:59,6,0 chrVII 111603 . A T 145.13 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.31;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:178,18,0 chrVII 111607 . A G 142.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.69;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:175,18,0 chrVII 111609 . A G 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=5.59;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:21:184,21,0 chrVII 111614 . G A 237 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=6.77;SB=-8.702e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:30:270,30,0 chrVII 111618 . T G 253 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.02;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:286,33,0 chrVII 111632 . G A 532 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=10.04;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:565,60,0 chrVII 111678 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=21.25;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2222,231,0 chrVII 111703 . A T 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=7.747;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=1.704;QD=23.50;ReadPosRankSum=1.704;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2971,303,0 chrVII 111770 . G C 3128 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=25.23;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3161,327,0 chrVII 111789 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.129;QD=23.73;ReadPosRankSum=1.706;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3237,336,0 chrVII 111809 . A G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=22.82;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3286,351,0 chrVII 111921 . G C 4307.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.41;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4307,465,0 chrVII 111953 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=23.67;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3764,402,0 chrVII 111969 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.693;DP=156;Dels=0.00;FS=7.694;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-0.614;QD=21.53;ReadPosRankSum=3.703;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:5,151:156:99:3359,348,0 chrVII 111972 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=2.622;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.064;QD=21.28;ReadPosRankSum=2.384;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3203,339,0 chrVII 112033 . G T 2397 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.61;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2430,240,0 chrVII 112158 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.28;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1949,201,0 chrVII 112175 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=22.35;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1508,153,0 chrVII 112250 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=31.5551;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.45;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:977,99,0 chrVII 112754 . A G 4298.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.49;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4298,456,0 chrVII 112793 . G A 5063.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.7208;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=24.70;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5063,511,0 chrVII 112826 . T A 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9588;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.905;QD=22.81;ReadPosRankSum=1.646;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4584,484,0 chrVII 112862 . T C 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.3686;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.829;QD=23.35;ReadPosRankSum=1.716;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4950,514,0 chrVII 112949 . A G 2454.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.607;DP=365;Dels=0.00;FS=16.037;HaplotypeScore=20.6375;MLEAC=1;MLEAF=0.500;MQ=40.14;MQ0=0;MQRankSum=0.202;QD=6.72;ReadPosRankSum=9.347;SB=-5.840e+02 GT:AD:DP:GQ:PL 0/1:192,173:365:99:2484,0,109 chrVII 112955 . A G 1928.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.304;DP=371;Dels=0.00;FS=39.184;HaplotypeScore=16.5162;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=0;MQRankSum=-3.481;QD=5.20;ReadPosRankSum=4.360;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:218,153:371:99:1958,0,439 chrVII 112958 . A G 1767.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.265;DP=369;Dels=0.00;FS=43.902;HaplotypeScore=86.5614;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=0;MQRankSum=-5.580;QD=4.79;ReadPosRankSum=3.200;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:221,148:369:99:1797,0,674 chrVII 112988 . T A 628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=383;Dels=0.00;FS=44.262;HaplotypeScore=95.4414;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=0;MQRankSum=-8.750;QD=1.64;ReadPosRankSum=-12.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,80:383:99:658,0,2339 chrVII 112994 . G A 2689.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.506;DP=364;Dels=0.00;FS=51.589;HaplotypeScore=15.4340;MLEAC=1;MLEAF=0.500;MQ=47.41;MQ0=0;MQRankSum=6.756;QD=7.39;ReadPosRankSum=13.654;SB=-3.317e+03 GT:AD:DP:GQ:PL 0/1:80,283:364:99:2719,0,533 chrVII 113123 . A G 7690.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=377;Dels=0.00;FS=5.206;HaplotypeScore=23.6107;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=0.475;QD=20.40;ReadPosRankSum=3.351;SB=-3.813e+03 GT:AD:DP:GQ:PL 1/1:4,371:377:99:7690,808,0 chrVII 113471 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5479,550,0 chrVII 113653 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=188;Dels=0.00;FS=14.409;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.080;QD=24.18;ReadPosRankSum=3.394;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:4,182:188:99:4545,478,0 chrVII 113828 . A C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=178;Dels=0.00;FS=6.613;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.958;QD=23.61;ReadPosRankSum=2.379;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4203,445,0 chrVII 114332 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3862,388,0 chrVII 114793 . C A 2088 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2121,219,0 chrVII 115232 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=22.69;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1190,123,0 chrVII 115250 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=21.65;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1137,120,0 chrVII 115467 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6205;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=26.08;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2250,225,0 chrVII 115589 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.75;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1830,183,0 chrVII 115633 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.36;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2319,234,0 chrVII 115759 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.60;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1841,192,0 chrVII 115872 . C A 2679 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6931;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.27;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2712,279,0 chrVII 115965 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2262,234,0 chrVII 116078 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.43;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2681,276,0 chrVII 116382 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.010;HaplotypeScore=10.2102;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.000;QD=21.81;ReadPosRankSum=1.675;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:4035,426,0 chrVII 116400 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.471;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.420;QD=22.09;ReadPosRankSum=1.691;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3755,402,0 chrVII 116454 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.15;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4250,427,0 chrVII 116907 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.23;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4171,415,0 chrVII 117360 . T C 4371.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.4860;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.28;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4371,457,0 chrVII 117574 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.95;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2553,258,0 chrVII 117609 . A C 1922 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.73;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1955,204,0 chrVII 117630 . A G 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.062;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.958;QD=22.91;ReadPosRankSum=1.691;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2003,207,0 chrVII 117810 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=24.59;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2394,237,0 chrVII 117824 . A T 2168 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.47;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2201,219,0 chrVII 117825 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.80;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2053,216,0 chrVII 117896 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.73;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3432,343,0 chrVII 118133 . C T 5864.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.0570;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=26.53;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5864,592,0 chrVII 118274 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.42;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4457,445,0 chrVII 118535 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=25.62;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4663,466,0 chrVII 119177 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.136;HaplotypeScore=11.1865;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.361;QD=25.99;ReadPosRankSum=-1.212;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3665,367,0 chrVII 119852 . C T 6136.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=20.5423;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.36;SB=-3.169e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6136,613,0 chrVII 119894 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1750;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.21;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5799,586,0 chrVII 120263 . T G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.96;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4291,459,0 chrVII 120910 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=8.2100;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.419;QD=20.96;ReadPosRankSum=1.690;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3542,367,0 chrVII 120933 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.88;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4056,400,0 chrVII 121176 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2676,285,0 chrVII 121571 . T C 5481.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=25.73;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5481,574,0 chrVII 121697 . C T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.21;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3994,388,0 chrVII 121769 . G T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=22.31;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3302,328,0 chrVII 121774 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5891;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.10;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3072,327,0 chrVII 121840 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.47;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3709,373,0 chrVII 121902 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=25.47;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3769,402,0 chrVII 121931 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=24.40;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2424,240,0 chrVII 121932 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=23.65;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2303,240,0 chrVII 122047 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.79;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2933,292,0 chrVII 122120 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.1543;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=0;QD=9.77;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1342,138,0 chrVII 122226 . T A 1160 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;MQRankSum=-0.144;QD=24.17;ReadPosRankSum=1.660;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1193,123,0 chrVII 122234 . G C 1265 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=22.59;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1298,141,0 chrVII 122235 . T A 1316 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;MQRankSum=-1.513;QD=22.69;ReadPosRankSum=2.365;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1349,141,0 chrVII 122391 . C A 1992 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=20.33;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2025,201,0 chrVII 122394 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;MQRankSum=-1.093;QD=18.97;ReadPosRankSum=2.400;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1892,201,0 chrVII 122405 . C A 1605 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=18.45;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1638,168,0 chrVII 122445 . T C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=85;Dels=0.00;FS=4.420;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=-1.231;QD=14.71;ReadPosRankSum=0.355;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1283,113,0 chrVII 122455 . T G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-1.732;QD=13.78;ReadPosRankSum=1.622;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1328,141,0 chrVII 122466 . T A 1231 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=14.15;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1264,126,0 chrVII 122499 . T A 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-1.476;QD=15.41;ReadPosRankSum=2.393;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1358,135,0 chrVII 122622 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=27.28;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3274,319,0 chrVII 122646 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=24.09;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3165,313,0 chrVII 122674 . A T 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=4.739;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.957;QD=23.63;ReadPosRankSum=1.655;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3200,319,0 chrVII 122793 . A G 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=227;Dels=0.00;FS=7.873;HaplotypeScore=12.8220;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.628;QD=23.15;ReadPosRankSum=2.385;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5256,559,0 chrVII 123330 . G C 4387.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.94;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4387,474,0 chrVII 123533 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3834,394,0 chrVII 123568 . T A 4952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.7137;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.417;QD=26.48;ReadPosRankSum=1.677;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4952,496,0 chrVII 123716 . G T 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.9227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.372;QD=22.72;ReadPosRankSum=1.607;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:1,220:225:99:5111,538,0 chrVII 123812 . C T 6117.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.8121;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.18;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6117,604,0 chrVII 124205 . C T 5995.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=20.5334;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.37;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5995,607,0 chrVII 124322 . C T 4931.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.2287;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.59;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,204:209:99:4931,499,0 chrVII 124413 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=14.86;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1534,165,0 chrVII 124460 . A G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.456;QD=23.63;ReadPosRankSum=1.701;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2703,279,0 chrVII 124525 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2487;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.55;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3266,328,0 chrVII 124541 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.62;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3279,351,0 chrVII 124671 . A G 4869.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.5072;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=25.76;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4869,519,0 chrVII 124719 . A G 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=6.236;HaplotypeScore=14.1834;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.862;QD=24.57;ReadPosRankSum=1.717;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5603,606,0 chrVII 124761 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.89;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4349,442,0 chrVII 124850 . T C 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=4.428;HaplotypeScore=11.2801;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.625;QD=23.96;ReadPosRankSum=1.653;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5272,559,0 chrVII 124916 . A G 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.3419;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.138;QD=21.35;ReadPosRankSum=2.427;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4760,496,0 chrVII 124931 . T C 4506.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.09;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4506,469,0 chrVII 125048 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.96;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3556,352,0 chrVII 125090 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=137;Dels=0.00;FS=12.639;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=2.096;QD=24.67;ReadPosRankSum=3.393;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:4,131:137:99:3380,349,0 chrVII 125128 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.39;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4075,406,0 chrVII 125147 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.222;QD=22.22;ReadPosRankSum=1.714;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4378,460,0 chrVII 125177 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.95;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4169,412,0 chrVII 125195 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.350;QD=18.15;ReadPosRankSum=1.714;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:3521,366,0 chrVII 125279 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.53;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3876,405,0 chrVII 125333 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.6992;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.24;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4601,472,0 chrVII 125498 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.909;QD=21.60;ReadPosRankSum=1.689;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3477,341,0 chrVII 125513 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=9.6644;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.394;QD=20.69;ReadPosRankSum=2.367;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3136,324,0 chrVII 125604 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.68;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3877,385,0 chrVII 125655 . G T 3157 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.24;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3190,339,0 chrVII 125658 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=3.031;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.629;QD=20.18;ReadPosRankSum=2.283;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3289,339,0 chrVII 125786 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.371;QD=22.74;ReadPosRankSum=1.707;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3239,345,0 chrVII 125810 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.14;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3022,315,0 chrVII 126093 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=142;Dels=0.00;FS=7.257;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.975;QD=20.37;ReadPosRankSum=2.362;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:2926,309,0 chrVII 126106 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.51;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2802,288,0 chrVII 126149 . G A 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-1.382;QD=18.46;ReadPosRankSum=-0.017;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1861,163,0 chrVII 126167 . A T 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.173;QD=19.64;ReadPosRankSum=1.697;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1997,201,0 chrVII 126264 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2899,300,0 chrVII 126362 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=26.07;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3267,339,0 chrVII 126466 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=126;Dels=0.00;FS=10.146;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.779;QD=24.05;ReadPosRankSum=2.910;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,120:126:99:3063,321,0 chrVII 126593 . C A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.33;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4331,457,0 chrVII 126626 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.8919;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.520;QD=24.71;ReadPosRankSum=-1.472;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3978,387,0 chrVII 126809 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=6.963;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.276;QD=23.62;ReadPosRankSum=2.400;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4723,490,0 chrVII 126818 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=3.160;HaplotypeScore=14.6468;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.029;QD=22.78;ReadPosRankSum=1.715;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4762,502,0 chrVII 126887 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=189;Dels=0.00;FS=3.797;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.435;QD=23.43;ReadPosRankSum=1.714;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4429,460,0 chrVII 126965 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=3.401;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.968;QD=22.85;ReadPosRankSum=1.713;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4295,465,0 chrVII 127046 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.919;QD=22.55;ReadPosRankSum=1.714;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4464,472,0 chrVII 127208 . T C 5284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.7741;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.807;QD=23.91;ReadPosRankSum=1.685;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5284,559,0 chrVII 127350 . G T 6924.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.5309;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.64;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6924,688,0 chrVII 127817 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=4.304;HaplotypeScore=5.7500;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.470;QD=23.65;ReadPosRankSum=1.680;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3155,327,0 chrVII 127838 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.00;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3081,327,0 chrVII 128174 . C A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.55;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3297,325,0 chrVII 128183 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.155;QD=21.21;ReadPosRankSum=1.655;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2875,294,0 chrVII 128273 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.20;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3666,382,0 chrVII 128438 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.0457;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.39;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4317,436,0 chrVII 128542 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.117;QD=26.57;ReadPosRankSum=1.654;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4729,490,0 chrVII 128627 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.065;QD=24.10;ReadPosRankSum=1.714;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4507,463,0 chrVII 128648 . T A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.63;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4467,445,0 chrVII 128719 . A G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=3.080;HaplotypeScore=11.8690;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.779;QD=25.45;ReadPosRankSum=1.677;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4836,496,0 chrVII 128890 . C G 4242.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.97;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4242,433,0 chrVII 129074 . T G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.029;QD=21.14;ReadPosRankSum=1.644;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2570,270,0 chrVII 129145 . C G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.28;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3243,333,0 chrVII 129170 . G C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.19;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3338,348,0 chrVII 129312 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.33;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3397,357,0 chrVII 129354 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.70;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3220,322,0 chrVII 129417 . G C 4396.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.86;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4396,454,0 chrVII 129467 . G A 4879.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.2939;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.95;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4879,487,0 chrVII 129556 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.9213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3739,382,0 chrVII 130374 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.18;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2207,216,0 chrVII 130662 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.91;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4041,412,0 chrVII 130699 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=190;Dels=0.00;FS=8.253;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.208;QD=24.31;ReadPosRankSum=2.423;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4619,501,0 chrVII 130737 . C T 5147.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=26.53;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5147,517,0 chrVII 130869 . T A 5046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=3.292;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.025;QD=24.38;ReadPosRankSum=1.715;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5046,502,0 chrVII 130872 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.32;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4597,495,0 chrVII 130923 . T C 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=3.089;HaplotypeScore=11.5221;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.062;QD=21.23;ReadPosRankSum=1.685;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4776,513,0 chrVII 130953 . T C 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=234;Dels=0.00;FS=9.095;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.942;QD=23.57;ReadPosRankSum=3.423;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5516,574,0 chrVII 131035 . C G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.42;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4084,421,0 chrVII 131037 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=200;Dels=0.00;FS=6.451;HaplotypeScore=5.6555;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.031;QD=19.73;ReadPosRankSum=2.425;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:3946,415,0 chrVII 131125 . G C 5537.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=21.3719;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.07;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5537,583,0 chrVII 131244 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=178;Dels=0.00;FS=12.755;HaplotypeScore=12.9182;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.705;QD=23.17;ReadPosRankSum=2.960;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,171:178:99:4124,438,0 chrVII 131285 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=26.68;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4615,469,0 chrVII 131383 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.01;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3937,394,0 chrVII 131402 . C A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=23.62;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3401,340,0 chrVII 131409 . A C 3067 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=22.39;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3100,321,0 chrVII 131425 . A G 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=3.042;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.366;QD=18.80;ReadPosRankSum=2.412;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2515,264,0 chrVII 131475 . G A 2227 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=19.37;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2260,228,0 chrVII 131479 . A G 1994 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=17.80;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2027,222,0 chrVII 131485 . A G 2107 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.98;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2140,222,0 chrVII 131489 . A G 2103 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=18.95;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2136,219,0 chrVII 131683 . T G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.369;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.275;QD=21.58;ReadPosRankSum=1.705;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2774,297,0 chrVII 131699 . A C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.962;QD=22.20;ReadPosRankSum=1.643;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2630,273,0 chrVII 131741 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=130;Dels=0.00;FS=6.903;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.445;QD=22.63;ReadPosRankSum=2.374;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2975,315,0 chrVII 131940 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1726;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.29;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3547,352,0 chrVII 131950 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.00;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3201,339,0 chrVII 132056 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.5074;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.559;QD=24.03;ReadPosRankSum=1.683;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3364,345,0 chrVII 132427 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.32;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2806,294,0 chrVII 132451 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.09;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2893,289,0 chrVII 132482 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.84;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3056,304,0 chrVII 132512 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.15;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2834,297,0 chrVII 132768 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.23;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1880,192,0 chrVII 132772 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.86;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1781,183,0 chrVII 133042 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=120;Dels=0.00;FS=5.453;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.185;QD=23.67;ReadPosRankSum=2.908;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2874,297,0 chrVII 133195 . A T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.46;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3590,355,0 chrVII 133288 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3907,397,0 chrVII 133381 . C T 4928.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.53;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4928,514,0 chrVII 133645 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.13;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3452,346,0 chrVII 133650 . A C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.643;QD=21.16;ReadPosRankSum=1.689;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3365,346,0 chrVII 133939 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.59;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3444,372,0 chrVII 134043 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.35;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4322,427,0 chrVII 134124 . A T 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=3.779;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.772;QD=25.38;ReadPosRankSum=1.428;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3756,370,0 chrVII 134263 . T G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=136;Dels=0.00;FS=9.523;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.237;QD=20.44;ReadPosRankSum=2.889;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2813,294,0 chrVII 134299 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=18.13;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2662,267,0 chrVII 134308 . A G 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=144;Dels=0.00;FS=4.907;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=-1.137;QD=14.59;ReadPosRankSum=3.118;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:2134,228,0 chrVII 134315 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;MQRankSum=-1.534;QD=14.02;ReadPosRankSum=1.707;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1996,210,0 chrVII 134320 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=14.07;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2059,216,0 chrVII 134338 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.430;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=-0.023;QD=16.56;ReadPosRankSum=1.664;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2566,267,0 chrVII 134447 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=26.40;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3855,385,0 chrVII 134556 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=24.63;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4040,424,0 chrVII 134584 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.73;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3341,348,0 chrVII 134674 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.13;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3499,349,0 chrVII 134716 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=137;Dels=0.00;FS=8.300;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.337;QD=23.31;ReadPosRankSum=2.378;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3226,339,0 chrVII 134740 . T G 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.81;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3108,330,0 chrVII 134782 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.30;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3281,328,0 chrVII 134806 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.26;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3323,331,0 chrVII 134947 . C G 3055 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.46;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3088,330,0 chrVII 134991 . A G 3075 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.78;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3108,321,0 chrVII 135028 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.91;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4160,415,0 chrVII 135046 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=26.53;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4643,460,0 chrVII 135172 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.01;FS=3.323;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.481;QD=24.52;ReadPosRankSum=1.708;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3555,361,0 chrVII 135193 . T A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=25.11;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3591,358,0 chrVII 135217 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.764;QD=21.36;ReadPosRankSum=1.668;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3439,358,0 chrVII 135415 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.56;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4735,493,0 chrVII 135430 . G T 5167.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.84;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5167,517,0 chrVII 135703 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.287;QD=22.88;ReadPosRankSum=1.662;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3409,360,0 chrVII 135724 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=137;Dels=0.00;FS=2.584;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.860;QD=23.24;ReadPosRankSum=2.684;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3217,328,0 chrVII 135811 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.47;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3490,349,0 chrVII 135982 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.99;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3407,352,0 chrVII 136108 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.1512;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3345,357,0 chrVII 136168 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5946;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.61;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4636,463,0 chrVII 136222 . T C 5509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.6491;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.321;QD=24.70;ReadPosRankSum=1.685;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,218:223:99:5509,577,0 chrVII 136315 . T C 5104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.9637;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.778;QD=26.04;ReadPosRankSum=1.714;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:5104,541,0 chrVII 136414 . T A 7306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=277;Dels=0.00;FS=3.303;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.481;QD=26.38;ReadPosRankSum=1.707;SB=-3.610e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:7306,742,0 chrVII 136453 . C T 5938.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.8537;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.49;SB=-3.226e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5938,592,0 chrVII 136498 . A C 6214.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.76;SB=-3.370e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6214,649,0 chrVII 136657 . T C 4538.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.21;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4538,469,0 chrVII 136660 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.69;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4221,450,0 chrVII 136777 . A G 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6162;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.002;QD=23.76;ReadPosRankSum=1.695;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4396,466,0 chrVII 136894 . A G 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=4.236;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.767;QD=24.99;ReadPosRankSum=1.713;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4598,487,0 chrVII 137017 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=251;Dels=0.00;FS=10.539;HaplotypeScore=13.5052;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.875;QD=23.26;ReadPosRankSum=2.818;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:3,246:251:99:5837,613,0 chrVII 137326 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=248;Dels=0.00;FS=3.763;HaplotypeScore=13.5741;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.435;QD=23.59;ReadPosRankSum=1.690;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5851,628,0 chrVII 137377 . C T 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.995;QD=23.52;ReadPosRankSum=-1.452;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5527,567,0 chrVII 137398 . G T 5669.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=25.20;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5669,568,0 chrVII 137467 . T G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=4.277;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.563;QD=23.46;ReadPosRankSum=1.711;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3917,417,0 chrVII 137617 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=199;Dels=0.00;FS=3.968;HaplotypeScore=14.9563;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.591;QD=24.82;ReadPosRankSum=1.662;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4940,523,0 chrVII 137665 . G A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.92;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4630,463,0 chrVII 137722 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.73;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4040,421,0 chrVII 138010 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.95;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3970,394,0 chrVII 138020 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=2.874;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.133;QD=21.90;ReadPosRankSum=2.422;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3854,403,0 chrVII 138112 . T C 5993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.6271;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.045;QD=25.18;ReadPosRankSum=-1.454;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5993,616,0 chrVII 138155 . G A 5916.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.2425;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.15;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5916,631,0 chrVII 138766 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.65;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3334,351,0 chrVII 138791 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.57;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3317,331,0 chrVII 138853 . A T 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=6.211;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.286;QD=23.58;ReadPosRankSum=2.407;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2768,288,0 chrVII 139048 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=145;Dels=0.00;FS=3.979;HaplotypeScore=7.9102;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.422;QD=26.28;ReadPosRankSum=0.514;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3811,391,0 chrVII 139174 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.26;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3508,349,0 chrVII 139179 . A T 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.776;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-0.985;QD=21.90;ReadPosRankSum=1.649;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3658,364,0 chrVII 139322 . A G 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=182;Dels=0.00;FS=11.136;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.365;QD=23.10;ReadPosRankSum=2.962;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4204,447,0 chrVII 139341 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.24;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4160,435,0 chrVII 139372 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=7.198;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.007;QD=21.41;ReadPosRankSum=2.367;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3853,399,0 chrVII 139381 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=20.52;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3775,385,0 chrVII 139538 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=125;Dels=0.00;FS=2.592;HaplotypeScore=2.4511;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.621;QD=20.83;ReadPosRankSum=2.944;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2637,276,0 chrVII 139539 . T C 2635 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.60;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2668,276,0 chrVII 139626 . A G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.928;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.715;QD=21.63;ReadPosRankSum=1.705;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2758,288,0 chrVII 139627 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.214;QD=21.19;ReadPosRankSum=0.668;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2745,285,0 chrVII 139686 . C A 3080 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.33;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3113,310,0 chrVII 139797 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.69;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3045,318,0 chrVII 139824 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=8.779;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.723;QD=23.26;ReadPosRankSum=2.393;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3080,321,0 chrVII 139844 . T A 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=8.004;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.704;QD=24.14;ReadPosRankSum=2.382;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3500,346,0 chrVII 139909 . A G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.986;QD=22.91;ReadPosRankSum=1.702;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2691,282,0 chrVII 139917 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=3.045;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.151;QD=22.60;ReadPosRankSum=2.404;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2496,267,0 chrVII 140030 . A G 2696 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=24.51;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2729,282,0 chrVII 140188 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=23.15;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1468,144,0 chrVII 140207 . G A 1434 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=22.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1467,150,0 chrVII 140223 . C T 1150 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=18.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1183,126,0 chrVII 140227 . T A 1132 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1165,117,0 chrVII 140232 . T C 1051 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1084,111,0 chrVII 140234 . T G 1024 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1057,108,0 chrVII 140259 . G A 606 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=16.38;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:66:639,66,0 chrVII 140267 . C T 463 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=15.43;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:496,57,0 chrVII 140290 . C T 150.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.9713;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.38;SB=-3.007e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:183,21,0 chrVII 140294 . A C 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DP=16;Dels=0.00;FS=4.260;HaplotypeScore=2.9713;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;MQRankSum=-1.139;QD=2.31;ReadPosRankSum=-0.597;SB=2.03 GT:AD:DP:GQ:PL 1/1:6,10:16:9:69,9,0 chrVII 140631 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=168;Dels=0.00;FS=2.962;HaplotypeScore=11.7820;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.148;QD=24.11;ReadPosRankSum=2.406;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4051,426,0 chrVII 140686 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8855;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.59;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3839,382,0 chrVII 140806 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.24;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4291,454,0 chrVII 140941 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=157;Dels=0.00;FS=3.994;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.057;QD=21.08;ReadPosRankSum=1.642;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3309,354,0 chrVII 141046 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.659;QD=24.46;ReadPosRankSum=1.710;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3792,402,0 chrVII 141082 . A C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=149;Dels=0.00;FS=6.801;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.379;QD=22.84;ReadPosRankSum=2.416;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3403,366,0 chrVII 141115 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.546;QD=23.87;ReadPosRankSum=1.662;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3557,381,0 chrVII 141144 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=3.024;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.679;QD=23.03;ReadPosRankSum=2.358;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3708,379,0 chrVII 141286 . C G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.92;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3469,369,0 chrVII 141481 . T A 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=153;Dels=0.00;FS=2.762;HaplotypeScore=9.7228;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.586;QD=25.05;ReadPosRankSum=2.289;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3833,379,0 chrVII 141723 . A G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2978;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.55;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4639,481,0 chrVII 141743 . C T 4839.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.4982;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.49;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4839,502,0 chrVII 141776 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.90;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4493,466,0 chrVII 141849 . G T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.83;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3861,379,0 chrVII 141864 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.983;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.887;QD=23.33;ReadPosRankSum=2.419;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3780,385,0 chrVII 141946 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=191;Dels=0.00;FS=7.164;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-2.424;QD=24.97;ReadPosRankSum=2.411;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4769,493,0 chrVII 142006 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=25.94;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4177,415,0 chrVII 142176 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0207;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.99;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3698,373,0 chrVII 142353 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=26.10;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3915,394,0 chrVII 142388 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.63;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3379,352,0 chrVII 142398 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=25.45;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3589,358,0 chrVII 142582 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=119;Dels=0.00;FS=8.331;HaplotypeScore=8.0835;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.202;QD=26.01;ReadPosRankSum=3.384;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:3128,321,0 chrVII 142631 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.200;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.845;QD=24.26;ReadPosRankSum=1.675;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2968,303,0 chrVII 142656 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.19;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2915,309,0 chrVII 142677 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.52;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2926,294,0 chrVII 142737 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5804;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=25.27;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3192,319,0 chrVII 142798 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=2.957;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.683;QD=24.58;ReadPosRankSum=2.417;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3786,405,0 chrVII 142863 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.45;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3846,391,0 chrVII 142953 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9337;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.01;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4473,442,0 chrVII 143025 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3836,385,0 chrVII 143073 . C T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4598,454,0 chrVII 143359 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.89;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4516,466,0 chrVII 143748 . C T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.03;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4685,472,0 chrVII 143923 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2725;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.84;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3237,322,0 chrVII 144117 . C A 2166 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=24.07;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2199,219,0 chrVII 144119 . G A 2095 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=24.08;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2128,213,0 chrVII 144123 . G A 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=23.64;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2019,204,0 chrVII 144176 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.2269;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.76;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1643,165,0 chrVII 144257 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=25.38;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2343,240,0 chrVII 144293 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=20.27;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1898,195,0 chrVII 144298 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=-1.841;QD=17.82;ReadPosRankSum=2.317;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1690,180,0 chrVII 144318 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=13.35;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1275,135,0 chrVII 144323 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=13.86;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1308,141,0 chrVII 144371 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.71;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2580,273,0 chrVII 144459 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=4.486;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.793;QD=21.38;ReadPosRankSum=1.703;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2599,282,0 chrVII 144474 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=21.23;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2708,294,0 chrVII 144500 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=21.98;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3341,334,0 chrVII 144516 . T A 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=0.606;QD=21.58;ReadPosRankSum=1.710;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3453,351,0 chrVII 144562 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=1.659;QD=22.75;ReadPosRankSum=1.708;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3276,351,0 chrVII 144725 . A C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.892;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-0.740;QD=24.27;ReadPosRankSum=2.373;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3140,324,0 chrVII 144744 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=22.54;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2738,285,0 chrVII 144765 . T A 2131 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.49;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2164,219,0 chrVII 144768 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.89;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2226,222,0 chrVII 144828 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=23.89;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2948,297,0 chrVII 144867 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.959;QD=27.05;ReadPosRankSum=1.705;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3517,375,0 chrVII 144924 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7411;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.393;QD=26.27;ReadPosRankSum=-1.341;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3494,338,0 chrVII 145098 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2037,204,0 chrVII 145450 . T C 446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.208;QD=17.84;ReadPosRankSum=1.595;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:51:479,51,0 chrVII 145485 . G A 609 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=18.45;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:642,66,0 chrVII 145505 . C T 469 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=14.21;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:502,51,0 chrVII 145512 . A G 404 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=11.54;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:437,45,0 chrVII 145515 . G A 392 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=12.65;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:425,42,0 chrVII 145516 . G A 394 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=12.31;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:42:427,42,0 chrVII 145655 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=24.71;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1293,135,0 chrVII 145758 . G C 1340 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=25.77;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1373,147,0 chrVII 145800 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.56;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1541,159,0 chrVII 145962 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.0917;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.022;QD=25.71;ReadPosRankSum=1.687;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3959,412,0 chrVII 146025 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.90;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3235,319,0 chrVII 146033 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=5.395;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.147;QD=20.03;ReadPosRankSum=1.708;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,141:146:99:2958,303,0 chrVII 146193 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.758;QD=24.56;ReadPosRankSum=1.714;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4715,493,0 chrVII 146595 . T C 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=180;Dels=0.00;FS=5.930;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.994;QD=24.84;ReadPosRankSum=2.915;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:4472,472,0 chrVII 146946 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.83;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3288,331,0 chrVII 147192 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.191;QD=22.42;ReadPosRankSum=1.660;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2185,231,0 chrVII 147207 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.72;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2381,246,0 chrVII 147249 . G C 2306 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1440;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.06;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2339,243,0 chrVII 147427 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7193;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.92;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4276,442,0 chrVII 147474 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.569;QD=23.94;ReadPosRankSum=1.680;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3241,339,0 chrVII 147477 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.959;QD=23.58;ReadPosRankSum=1.626;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3145,324,0 chrVII 147547 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.653;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.693;QD=25.60;ReadPosRankSum=1.710;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4122,438,0 chrVII 147603 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.19;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4056,424,0 chrVII 147686 . A T 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.195;QD=23.50;ReadPosRankSum=1.680;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3158,333,0 chrVII 147698 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.88;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3257,322,0 chrVII 148993 . G C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.23;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3586,378,0 chrVII 149109 . C G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3353,351,0 chrVII 149745 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3577,352,0 chrVII 154206 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=2.982;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.553;QD=25.72;ReadPosRankSum=2.363;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4424,457,0 chrVII 154421 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.94;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2881,283,0 chrVII 156057 . T C 1298 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1331,138,0 chrVII 156252 . G A 3189 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1807;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3222,316,0 chrVII 157782 . T C 2570 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.15;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2603,279,0 chrVII 157962 . G C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.60;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:4096,427,0 chrVII 158256 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.3668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.11;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4090,430,0 chrVII 158425 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.57;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3030,304,0 chrVII 158616 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.36;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3971,429,0 chrVII 158922 . A T 153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.982;DP=230;Dels=0.00;FS=9.734;HaplotypeScore=909.0248;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=0;MQRankSum=-2.585;QD=0.67;ReadPosRankSum=-5.930;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:213,16:229:99:183,0,810 chrVII 158928 . A T 1621 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.7905;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=6.67;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:1654,168,0 chrVII 159246 . G C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=24.57;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3661,376,0 chrVII 159705 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2474,243,0 chrVII 162943 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.94;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1565,153,0 chrVII 163315 . T C 1202 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1235,129,0 chrVII 164025 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=189;Dels=0.00;FS=5.958;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.420;QD=23.31;ReadPosRankSum=2.835;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4406,471,0 chrVII 164774 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=141;Dels=0.00;FS=8.764;HaplotypeScore=12.7024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.167;QD=21.74;ReadPosRankSum=2.414;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3099,319,0 chrVII 164885 . A G 2808 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2841,291,0 chrVII 165111 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.01;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4677,484,0 chrVII 165349 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.54;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4449,451,0 chrVII 165434 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.34;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3432,349,0 chrVII 165469 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.23;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2844,283,0 chrVII 165497 . G C 2626 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.09;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2659,276,0 chrVII 165523 . C A 2749 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.50;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2782,271,0 chrVII 165780 . C A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.6289;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.96;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4314,430,0 chrVII 165842 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.597;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.577;QD=23.90;ReadPosRankSum=1.672;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4183,430,0 chrVII 165866 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=3.873;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.581;QD=22.85;ReadPosRankSum=1.689;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3702,399,0 chrVII 165923 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.12;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4848,487,0 chrVII 166144 . G A 2009 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.08;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2042,204,0 chrVII 166254 . A G 575 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=3.711;HaplotypeScore=3.6513;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.995;QD=12.23;ReadPosRankSum=1.659;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:69:608,69,0 chrVII 166257 . G A 584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.478;HaplotypeScore=3.6513;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=1.520;QD=11.92;ReadPosRankSum=1.662;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:69:617,69,0 chrVII 166259 . T C 634 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=13.21;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:69:667,69,0 chrVII 166667 . C G 1867 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2075;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.49;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1900,201,0 chrVII 167076 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=9.456;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.096;QD=23.04;ReadPosRankSum=2.376;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2337,246,0 chrVII 167099 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.17;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2402,246,0 chrVII 167210 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.00;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1645,165,0 chrVII 167578 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.64;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1994,204,0 chrVII 167583 . G C 1864 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.62;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1897,201,0 chrVII 167889 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.77;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3189,316,0 chrVII 167895 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.881;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.278;QD=21.53;ReadPosRankSum=2.365;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3176,333,0 chrVII 168156 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=181;Dels=0.00;FS=3.656;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.450;QD=21.34;ReadPosRankSum=1.713;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3863,408,0 chrVII 168582 . A T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3596,381,0 chrVII 169165 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.70;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2281,228,0 chrVII 169257 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.00;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2289,240,0 chrVII 169612 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.562;QD=24.48;ReadPosRankSum=1.687;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3794,397,0 chrVII 170211 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4134,427,0 chrVII 170641 . G A 322 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=9.76;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:36:355,36,0 chrVII 170880 . A C 2119 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.93;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2152,225,0 chrVII 171278 . G T 760 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.33;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:793,78,0 chrVII 171282 . T C 699 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.10;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:732,75,0 chrVII 171503 . G C 1948 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.97;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1981,207,0 chrVII 171569 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.80;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2404,243,0 chrVII 171571 . A T 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.665;QD=23.56;ReadPosRankSum=1.665;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2460,243,0 chrVII 171676 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.50;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2735,297,0 chrVII 171763 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=25.74;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3346,337,0 chrVII 171892 . C G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=25.69;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3930,406,0 chrVII 171909 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=24.14;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3839,388,0 chrVII 171921 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=22.49;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3734,388,0 chrVII 171949 . T C 2749 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.45;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2782,294,0 chrVII 171995 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.956;QD=21.70;ReadPosRankSum=1.704;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2745,285,0 chrVII 172032 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.05;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3569,361,0 chrVII 172111 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.51;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2593,267,0 chrVII 172132 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.02;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2631,267,0 chrVII 172210 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=26.28;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3364,349,0 chrVII 172231 . A T 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.150;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.770;QD=26.67;ReadPosRankSum=1.705;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3360,343,0 chrVII 172407 . A T 2935 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.66;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2968,309,0 chrVII 172596 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=105;Dels=0.00;FS=3.012;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.817;QD=24.02;ReadPosRankSum=2.402;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2555,261,0 chrVII 172879 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.13;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2346,246,0 chrVII 173276 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2993,298,0 chrVII 173856 . T A 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.632;QD=24.63;ReadPosRankSum=1.650;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3137,330,0 chrVII 174098 . C G 4769.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.9312;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.92;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4769,493,0 chrVII 174187 . G T 7171.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.2154;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.25;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:7171,736,0 chrVII 174247 . G A 6085.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.3440;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.00;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6085,598,0 chrVII 174324 . T C 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=4.184;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.441;QD=23.04;ReadPosRankSum=1.717;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5277,541,0 chrVII 174394 . A G 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.4487;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.125;QD=22.72;ReadPosRankSum=2.429;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,239:246:99:5588,603,0 chrVII 174507 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.399;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=25.07;ReadPosRankSum=1.712;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4412,460,0 chrVII 174818 . A G 4783.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.40;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4783,499,0 chrVII 174975 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4348,433,0 chrVII 175590 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=8.199;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.461;QD=25.47;ReadPosRankSum=2.409;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:3115,319,0 chrVII 175787 . A G 6209.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.09;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6209,640,0 chrVII 175866 . G A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.78;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4989,505,0 chrVII 175871 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.346;QD=22.36;ReadPosRankSum=1.701;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4941,511,0 chrVII 175893 . C G 4430.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.82;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4430,460,0 chrVII 176107 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=9.4138;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.074;QD=23.15;ReadPosRankSum=1.703;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2741,285,0 chrVII 176415 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.1729;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3252,342,0 chrVII 177152 . A C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.274;QD=23.49;ReadPosRankSum=0.747;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3110,294,0 chrVII 177165 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.93;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3303,328,0 chrVII 177524 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.761;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.220;QD=22.48;ReadPosRankSum=1.705;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2865,300,0 chrVII 177632 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.13;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2822,285,0 chrVII 177687 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.50;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2800,294,0 chrVII 177783 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.79;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3570,361,0 chrVII 177876 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.895;HaplotypeScore=5.8569;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.934;QD=23.14;ReadPosRankSum=1.709;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3564,375,0 chrVII 177882 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.03;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3251,339,0 chrVII 178052 . G T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.58;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4252,427,0 chrVII 178133 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.2141;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.69;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4617,463,0 chrVII 178179 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.54;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4572,460,0 chrVII 178402 . G A 4494.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9458;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.83;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4494,451,0 chrVII 178509 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2835,291,0 chrVII 179910 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3896;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.69;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3432,343,0 chrVII 180027 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3829,414,0 chrVII 181007 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0238;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.89;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2790,294,0 chrVII 181036 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=2.917;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.537;QD=20.14;ReadPosRankSum=2.377;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2752,291,0 chrVII 181053 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.71;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2995,309,0 chrVII 181069 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.36;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2686,291,0 chrVII 181138 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.4765;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.70;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4600,469,0 chrVII 181935 . T A 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.957;QD=26.70;ReadPosRankSum=1.709;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:4059,406,0 chrVII 182242 . T G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.936;QD=24.63;ReadPosRankSum=1.709;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3719,379,0 chrVII 182388 . C A 4446.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.31;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4446,436,0 chrVII 182485 . T G 4602.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.15;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4602,475,0 chrVII 182781 . A G 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.257;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.669;QD=23.65;ReadPosRankSum=1.690;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3879,394,0 chrVII 182995 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.11;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3351,337,0 chrVII 183038 . T C 3114 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3147,333,0 chrVII 183625 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4099,421,0 chrVII 183709 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=3.032;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.674;QD=24.71;ReadPosRankSum=2.423;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4571,484,0 chrVII 184145 . T A 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.471;QD=24.60;ReadPosRankSum=1.695;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2321,243,0 chrVII 184213 . G T 2019 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.04;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2052,213,0 chrVII 184438 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.160;QD=25.53;ReadPosRankSum=1.636;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2790,294,0 chrVII 184572 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1696,171,0 chrVII 185240 . T G 3179 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3212,336,0 chrVII 185280 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=157;Dels=0.00;FS=13.257;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.563;QD=23.82;ReadPosRankSum=3.292;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3740,393,0 chrVII 185313 . T G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4098,427,0 chrVII 185620 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.71;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2304,243,0 chrVII 185806 . G A 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.940;DP=71;Dels=0.00;FS=3.680;HaplotypeScore=6.5593;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=-0.198;QD=21.79;ReadPosRankSum=1.534;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1580,159,0 chrVII 185836 . A G 233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=53.4179;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-1.123;QD=3.64;ReadPosRankSum=1.531;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:1,16:64:30:266,30,0 chrVII 185846 . G A 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=65;Dels=0.00;FS=6.660;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.408;QD=13.89;ReadPosRankSum=2.373;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:93:936,93,0 chrVII 185905 . C T 2082 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.15;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2115,213,0 chrVII 185982 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.8242;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.31;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1898,189,0 chrVII 186206 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.82;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4345,427,0 chrVII 186330 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.58;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4604,460,0 chrVII 186367 . A G 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=3.394;HaplotypeScore=9.8792;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.043;QD=23.56;ReadPosRankSum=1.629;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4783,516,0 chrVII 186769 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=4.851;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.701;QD=23.16;ReadPosRankSum=1.685;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5142,555,0 chrVII 186792 . C T 5972.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.09;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5972,595,0 chrVII 187003 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.578;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.263;QD=24.73;ReadPosRankSum=1.687;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3858,400,0 chrVII 187054 . T G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.042;QD=23.76;ReadPosRankSum=1.704;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3051,315,0 chrVII 187174 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0402;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.443;QD=23.79;ReadPosRankSum=1.705;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3102,324,0 chrVII 187348 . G T 1621 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=17.43;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1654,165,0 chrVII 187354 . A G 1434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;MQRankSum=-1.488;QD=16.87;ReadPosRankSum=1.691;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1467,156,0 chrVII 187532 . T A 3177 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=26.26;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3210,319,0 chrVII 187556 . C G 3133 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=25.68;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3166,330,0 chrVII 187678 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.87;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4216,433,0 chrVII 188242 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=127;Dels=0.00;FS=3.027;HaplotypeScore=14.9668;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.755;QD=24.76;ReadPosRankSum=2.370;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:3178,330,0 chrVII 188282 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=154;Dels=0.00;FS=5.239;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.204;QD=24.55;ReadPosRankSum=2.954;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3780,394,0 chrVII 188702 . G T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.66;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4513,451,0 chrVII 188827 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.4528;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3513,364,0 chrVII 189229 . A T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.07;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3610,370,0 chrVII 189910 . T G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=144;Dels=0.00;FS=2.957;HaplotypeScore=13.5052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.289;QD=23.33;ReadPosRankSum=2.415;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3360,349,0 chrVII 190037 . C G 3074 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3107,319,0 chrVII 190333 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.87;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3311,331,0 chrVII 190505 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.9446;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.48;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3897,385,0 chrVII 190661 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3298,328,0 chrVII 191102 . A G 7130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=291;Dels=0.00;FS=6.407;HaplotypeScore=30.5536;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.660;QD=24.50;ReadPosRankSum=2.407;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:2,286:291:99:7130,733,0 chrVII 191252 . A G 7546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.341;DP=336;Dels=0.00;FS=25.885;HaplotypeScore=35.4686;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.605;QD=22.46;ReadPosRankSum=4.525;SB=-3.711e+03 GT:AD:DP:GQ:PL 1/1:7,324:336:99:7546,805,0 chrVII 191348 . A G 8281.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.574;DP=384;Dels=0.00;FS=11.643;HaplotypeScore=23.0337;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.225;QD=21.57;ReadPosRankSum=3.795;SB=-4.323e+03 GT:AD:DP:GQ:PL 1/1:5,375:384:99:8281,889,0 chrVII 192137 . C T 5403.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5403,559,0 chrVII 193477 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2943,298,0 chrVII 193691 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.835;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.038;QD=26.89;ReadPosRankSum=1.707;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3711,390,0 chrVII 193938 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4537,454,0 chrVII 194505 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3041,312,0 chrVII 194553 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2965,298,0 chrVII 195492 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.6014;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.72;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3564,361,0 chrVII 195522 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=19.55;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3519,346,0 chrVII 195546 . G A 3296.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=16.90;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3296,340,0 chrVII 195549 . A G 3375.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=2.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.272;QD=17.22;ReadPosRankSum=2.337;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3375,351,0 chrVII 195555 . G A 3404.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=17.55;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3404,337,0 chrVII 195692 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.7662;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.26;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4749,469,0 chrVII 195804 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=209;Dels=0.00;FS=5.324;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-0.184;QD=23.29;ReadPosRankSum=2.947;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4867,505,0 chrVII 195843 . A G 6222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=267;Dels=0.00;FS=12.698;HaplotypeScore=17.8795;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.928;QD=23.30;ReadPosRankSum=2.966;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:6222,658,0 chrVII 195912 . A G 4965.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.3504;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.17;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4965,523,0 chrVII 196275 . C G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.93;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3715,388,0 chrVII 196338 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.35;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3252,339,0 chrVII 196468 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=2.882;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.297;QD=23.36;ReadPosRankSum=2.406;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2696,285,0 chrVII 196504 . G C 2633 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.5391;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.90;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2666,279,0 chrVII 196614 . T C 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=120;Dels=0.00;FS=6.673;HaplotypeScore=20.0294;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=2.179;QD=22.95;ReadPosRankSum=-0.219;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2787,291,0 chrVII 196684 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=27.06;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3762,376,0 chrVII 196757 . A T 3166 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=24.73;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3199,319,0 chrVII 196769 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=23.25;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2962,295,0 chrVII 196840 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6486;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=25.34;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4637,466,0 chrVII 196912 . G A 258 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.584;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=136.7649;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;MQRankSum=2.334;QD=1.59;ReadPosRankSum=-7.059;SB=3.00 GT:AD:DP:GQ:PL 1/1:142,20:162:36:291,36,0 chrVII 196916 . A G 280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.069;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=135.3111;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=1.566;QD=1.79;ReadPosRankSum=-5.993;SB=-3.900e+01 GT:AD:DP:GQ:PL 1/1:142,14:156:36:313,36,0 chrVII 196947 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=13.22;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1990,201,0 chrVII 196981 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=71.3872;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=14.02;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1786,186,0 chrVII 197150 . C A 5204.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.3601;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=25.14;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5204,532,0 chrVII 197362 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3643,384,0 chrVII 197446 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.70;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3579,361,0 chrVII 197813 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=101.8333;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.935;QD=22.61;ReadPosRankSum=1.705;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2882,300,0 chrVII 197942 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.56;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3214,316,0 chrVII 197989 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.83;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2413,240,0 chrVII 198003 . T A 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=1.268;QD=17.49;ReadPosRankSum=1.639;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1992,198,0 chrVII 198274 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.40;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4144,415,0 chrVII 198286 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.92;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4034,406,0 chrVII 198476 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.16;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3873,403,0 chrVII 199429 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2976,312,0 chrVII 199690 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.069;QD=22.77;ReadPosRankSum=1.695;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4349,460,0 chrVII 199882 . A G 5131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.792;DP=251;Dels=0.00;FS=21.535;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.369;QD=20.44;ReadPosRankSum=3.811;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:5,246:251:99:5131,555,0 chrVII 199894 . A G 5300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=247;Dels=0.00;FS=8.926;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.486;QD=21.46;ReadPosRankSum=2.429;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:5300,541,0 chrVII 200351 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.17;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4083,406,0 chrVII 200448 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4028,397,0 chrVII 200728 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.72;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3145,324,0 chrVII 201093 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3084,310,0 chrVII 201499 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2692,285,0 chrVII 201788 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2707,268,0 chrVII 201855 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1554;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.635;QD=23.70;ReadPosRankSum=1.659;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3389,354,0 chrVII 202039 . T G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4354,454,0 chrVII 202082 . A T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4525,451,0 chrVII 202475 . A G 2652 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2685,282,0 chrVII 202531 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=3.534;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.85;ReadPosRankSum=1.693;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2067,216,0 chrVII 202665 . T A 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=124;Dels=0.00;FS=6.096;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.667;QD=23.57;ReadPosRankSum=2.895;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2956,306,0 chrVII 203122 . G C 3006 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.8869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3039,315,0 chrVII 203677 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.288;QD=23.63;ReadPosRankSum=1.703;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2798,291,0 chrVII 203693 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.47;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2676,276,0 chrVII 203815 . C G 1947 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.91;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1980,207,0 chrVII 203897 . A T 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.693;QD=23.24;ReadPosRankSum=1.663;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1195,117,0 chrVII 203987 . A T 1030 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.91;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1063,108,0 chrVII 203994 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-0.524;QD=21.88;ReadPosRankSum=1.571;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:974,102,0 chrVII 204007 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=20.88;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:910,93,0 chrVII 204092 . T G 1773 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=27.70;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1806,183,0 chrVII 204226 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=28.40;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2589,258,0 chrVII 204286 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.99;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1858,192,0 chrVII 204321 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.42;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1736,177,0 chrVII 204339 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.56;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1654,174,0 chrVII 204665 . T G 2145 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2178,231,0 chrVII 204972 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2170,216,0 chrVII 205031 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3094,307,0 chrVII 205152 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.18;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2703,279,0 chrVII 205307 . T A 2343 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.41;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2376,246,0 chrVII 205559 . C A 3141 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=24.93;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3174,313,0 chrVII 205830 . T G 2291 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.86;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2324,237,0 chrVII 205832 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=24.53;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2388,237,0 chrVII 205894 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=18.28;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1642,177,0 chrVII 206526 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=18.74;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1570,165,0 chrVII 206532 . A T 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=5.344;HaplotypeScore=4.8690;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=-1.460;QD=17.92;ReadPosRankSum=1.693;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1628,162,0 chrVII 206685 . A C 2453 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2806;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.62;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2486,264,0 chrVII 206716 . T C 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.329;QD=20.41;ReadPosRankSum=1.672;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2400,261,0 chrVII 206722 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=22.19;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2496,243,0 chrVII 206738 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.031;QD=18.66;ReadPosRankSum=1.701;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2086,216,0 chrVII 207056 . A T 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.546;QD=24.15;ReadPosRankSum=1.705;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3173,316,0 chrVII 207071 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.550;QD=23.57;ReadPosRankSum=1.705;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3026,312,0 chrVII 207180 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.74;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3051,304,0 chrVII 207481 . C T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=27.21;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4380,439,0 chrVII 207520 . C A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.34;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3663,364,0 chrVII 207523 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=2.843;HaplotypeScore=4.2056;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.392;QD=21.04;ReadPosRankSum=2.420;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3471,361,0 chrVII 207551 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.0208;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.900;QD=20.68;ReadPosRankSum=1.693;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3701,384,0 chrVII 207761 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=195;Dels=0.00;FS=8.608;HaplotypeScore=4.8439;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.676;QD=23.33;ReadPosRankSum=3.352;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4549,478,0 chrVII 207781 . T G 4711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=7.127;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.078;QD=23.79;ReadPosRankSum=2.387;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4711,493,0 chrVII 207893 . A G 5525.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.8102;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.78;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5525,583,0 chrVII 208001 . C A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.28;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3490,366,0 chrVII 208005 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-1.069;QD=19.29;ReadPosRankSum=1.695;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3626,370,0 chrVII 208034 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.37;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3873,406,0 chrVII 208043 . T A 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=239;Dels=0.00;FS=3.177;HaplotypeScore=6.2347;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.138;QD=18.60;ReadPosRankSum=1.660;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:4446,454,0 chrVII 208280 . G C 4067.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=25.10;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4067,421,0 chrVII 208340 . T C 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=187;Dels=0.00;FS=6.580;HaplotypeScore=14.8504;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.790;QD=22.74;ReadPosRankSum=2.370;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4253,459,0 chrVII 208469 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=27.02;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3377,331,0 chrVII 208555 . A T 3139 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=25.94;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3172,319,0 chrVII 208622 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=23.88;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2588,267,0 chrVII 208634 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.75;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2467,258,0 chrVII 208689 . T C 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.617;QD=22.83;ReadPosRankSum=1.694;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2088,219,0 chrVII 208784 . T C 358 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=5.68;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:42:391,42,0 chrVII 208835 . G T 1566 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.57;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1599,165,0 chrVII 209011 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.98;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2813,297,0 chrVII 209066 . A G 3051 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.21;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3084,324,0 chrVII 209438 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3522,352,0 chrVII 209671 . G T 3005 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.29;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3038,315,0 chrVII 210027 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.80;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1556,165,0 chrVII 210194 . A G 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=8.073;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=0.607;QD=25.14;ReadPosRankSum=1.597;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1994,213,0 chrVII 210517 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=114;Dels=0.00;FS=5.237;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.731;QD=24.91;ReadPosRankSum=3.349;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2873,303,0 chrVII 210538 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.407;QD=22.28;ReadPosRankSum=1.702;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2595,273,0 chrVII 210629 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4424,439,0 chrVII 210745 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.09;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4340,454,0 chrVII 210785 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.99;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3358,351,0 chrVII 210946 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.215;QD=24.39;ReadPosRankSum=1.710;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,153:159:99:3878,409,0 chrVII 211015 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.359;QD=22.88;ReadPosRankSum=-0.010;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3867,385,0 chrVII 211576 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.09;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3138,313,0 chrVII 211876 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.084;QD=22.05;ReadPosRankSum=1.713;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4102,432,0 chrVII 211884 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.182;QD=21.71;ReadPosRankSum=2.291;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4081,427,0 chrVII 211975 . C T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.64;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5249,550,0 chrVII 212009 . T C 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=199;Dels=0.00;FS=3.762;HaplotypeScore=20.0681;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.453;QD=24.21;ReadPosRankSum=1.697;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,194:199:99:4817,493,0 chrVII 212128 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.12;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3352,351,0 chrVII 212216 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=177;Dels=0.00;FS=5.974;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.176;QD=24.97;ReadPosRankSum=2.960;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:4420,457,0 chrVII 212554 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.14;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4176,421,0 chrVII 212597 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5514;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.372;QD=23.73;ReadPosRankSum=1.620;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3654,396,0 chrVII 212679 . A T 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.651;QD=25.11;ReadPosRankSum=1.710;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3942,391,0 chrVII 212731 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.95;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3195,339,0 chrVII 212869 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.01;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2950,298,0 chrVII 213119 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.89;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3218,322,0 chrVII 213175 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3857,385,0 chrVII 213220 . G A 4241.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4241,421,0 chrVII 213795 . T G 73.51 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=1.02;SB=-9.425e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:12:106,12,0 chrVII 214328 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.82;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4194,450,0 chrVII 214440 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.62;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4062,409,0 chrVII 214473 . G C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3736,399,0 chrVII 214758 . C G 6076.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.6702;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.70;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6076,658,0 chrVII 214926 . C T 5380.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.0755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.13;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5380,562,0 chrVII 215575 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=3.005;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.782;QD=24.02;ReadPosRankSum=2.419;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3916,414,0 chrVII 215800 . G T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4258,442,0 chrVII 215891 . C T 3385.01 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.70;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3385,340,0 chrVII 215893 . G A 3189 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=20.98;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3222,333,0 chrVII 215900 . T C 3070 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=4.102;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.601;QD=21.17;ReadPosRankSum=1.684;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3103,321,0 chrVII 215909 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.03;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3017,300,0 chrVII 216083 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.43;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2545,252,0 chrVII 216137 . T A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1420;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.78;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3282,331,0 chrVII 216207 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.02;FS=3.194;HaplotypeScore=31.8419;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.245;QD=23.54;ReadPosRankSum=1.703;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2952,309,0 chrVII 216267 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.567;QD=23.94;ReadPosRankSum=1.638;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2666,282,0 chrVII 216479 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=159;Dels=0.00;FS=2.574;HaplotypeScore=13.3947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.172;QD=26.21;ReadPosRankSum=2.866;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:4168,430,0 chrVII 216641 . T A 5426.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5426,565,0 chrVII 216695 . G A 5495.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5495,550,0 chrVII 216869 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=173;Dels=0.00;FS=5.784;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.924;QD=25.12;ReadPosRankSum=2.948;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4345,445,0 chrVII 217016 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.52;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4288,442,0 chrVII 217362 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=21.14;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3446,360,0 chrVII 217364 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=21.34;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3500,366,0 chrVII 217417 . G C 2947 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=17.75;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2980,309,0 chrVII 217455 . C A 2549 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=21.24;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2582,261,0 chrVII 217457 . A G 2472 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.43;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2505,258,0 chrVII 217461 . A G 2360 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.218;QD=19.83;ReadPosRankSum=1.703;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2393,252,0 chrVII 217776 . G T 2564 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.96;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2597,259,0 chrVII 217800 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.034;QD=23.05;ReadPosRankSum=1.704;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2914,300,0 chrVII 217847 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=3.437;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.411;QD=24.05;ReadPosRankSum=1.682;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3391,363,0 chrVII 218139 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.95;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2236,225,0 chrVII 218213 . T A 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.649;HaplotypeScore=7.1742;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.456;QD=24.80;ReadPosRankSum=1.696;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2389,237,0 chrVII 218225 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.33;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1998,207,0 chrVII 218227 . C A 2020 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.95;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2053,201,0 chrVII 218285 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.39;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1603,159,0 chrVII 218390 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2756;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.18;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2475,246,0 chrVII 218492 . T C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.184;QD=22.62;ReadPosRankSum=1.674;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2747,285,0 chrVII 218498 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=118;Dels=0.00;FS=2.001;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.397;QD=21.48;ReadPosRankSum=3.337;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2568,267,0 chrVII 218949 . C A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.06;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4174,415,0 chrVII 218961 . T G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.88;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3763,388,0 chrVII 221007 . G T 2379 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2412,252,0 chrVII 221962 . G A 5471.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.7247;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.18;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5471,541,0 chrVII 221994 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.55;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4668,490,0 chrVII 222046 . C T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.93;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3991,397,0 chrVII 222140 . G T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.55;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3505,346,0 chrVII 222215 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.50;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2997,301,0 chrVII 222244 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.12;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3048,307,0 chrVII 222265 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.47;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2709,282,0 chrVII 222592 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=183;Dels=0.00;FS=7.109;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.778;QD=22.89;ReadPosRankSum=2.423;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4188,453,0 chrVII 222691 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.297;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.609;QD=23.87;ReadPosRankSum=1.708;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3390,354,0 chrVII 223151 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.23;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3357,348,0 chrVII 223273 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.76;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2358,246,0 chrVII 223275 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.28;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2551,252,0 chrVII 223303 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.40;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2175,216,0 chrVII 223507 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=24.48;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3476,343,0 chrVII 223519 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.66;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3384,334,0 chrVII 223550 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=1.027;QD=23.44;ReadPosRankSum=1.711;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3915,406,0 chrVII 223742 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.87;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3963,391,0 chrVII 223756 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.31;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3595,361,0 chrVII 223768 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.26;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3806,385,0 chrVII 223861 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.28;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3327,331,0 chrVII 223948 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=159;Dels=0.00;FS=9.708;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.146;QD=23.58;ReadPosRankSum=2.918;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3750,388,0 chrVII 224029 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.69;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3790,376,0 chrVII 225550 . A G 5469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=3.030;HaplotypeScore=13.3971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.885;QD=23.99;ReadPosRankSum=1.717;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:5469,580,0 chrVII 229921 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=122;Dels=0.00;FS=3.044;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-2.246;QD=24.80;ReadPosRankSum=2.368;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:3058,321,0 chrVII 231860 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2464,252,0 chrVII 234246 . C T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5179,514,0 chrVII 238515 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.06;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2824,300,0 chrVII 241508 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.43;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3420,363,0 chrVII 242298 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3114,333,0 chrVII 248225 . G C 631 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.76;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:664,69,0 chrVII 248449 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=23.53;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1092,114,0 chrVII 248584 . T C 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.817;QD=23.74;ReadPosRankSum=2.331;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1505,156,0 chrVII 249781 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=26.60;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3724,379,0 chrVII 250183 . C A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4512,451,0 chrVII 250680 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.0817;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.50;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4207,427,0 chrVII 254177 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.6082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.181;QD=23.04;ReadPosRankSum=0.445;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2475,255,0 chrVII 256487 . A G 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.650;QD=25.71;ReadPosRankSum=2.371;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:4036,418,0 chrVII 256673 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.14;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4261,427,0 chrVII 256784 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.92;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3613,381,0 chrVII 256814 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.075;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.954;QD=20.92;ReadPosRankSum=1.707;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2941,315,0 chrVII 256831 . T C 2988 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.2339;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.65;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3021,309,0 chrVII 256952 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.91;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2690,270,0 chrVII 257078 . A T 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=3.854;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.044;QD=23.08;ReadPosRankSum=1.645;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2780,277,0 chrVII 257091 . T G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.970;QD=22.78;ReadPosRankSum=1.663;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2334,246,0 chrVII 257334 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.74;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1125,114,0 chrVII 257349 . T A 1049 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.84;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1082,111,0 chrVII 260856 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.0881;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.651;QD=24.39;ReadPosRankSum=1.672;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4292,456,0 chrVII 260901 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.767;QD=24.11;ReadPosRankSum=1.680;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4919,525,0 chrVII 263115 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=2.947;HaplotypeScore=12.8137;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.401;QD=23.96;ReadPosRankSum=2.381;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3450,366,0 chrVII 263700 . T G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.172;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.252;QD=25.63;ReadPosRankSum=1.707;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3511,361,0 chrVII 264654 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=4.150;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.412;QD=24.65;ReadPosRankSum=1.705;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3238,339,0 chrVII 267395 . T G 468.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.974;DP=143;Dels=0.00;FS=237.892;HaplotypeScore=15.6944;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-1.909;QD=3.27;ReadPosRankSum=-7.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,70:143:99:498,0,1400 chrVII 267458 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.10;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3808,376,0 chrVII 267569 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=10.468;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.839;QD=22.56;ReadPosRankSum=2.351;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3384,366,0 chrVII 268487 . T C 3032 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.87;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3065,315,0 chrVII 270688 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4728,502,0 chrVII 270797 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2667;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4183,418,0 chrVII 271658 . G A 12000.01 filter AC=2;AF=1.00;AN=2;DP=478;Dels=0.00;FS=0.000;HaplotypeScore=33.0890;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.10;SB=-5.646e+03 GT:AD:DP:GQ:PL 1/1:0,476:478:99:12000,1205,0 chrVII 273424 . C T 6095.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.8328;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.27;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:6095,610,0 chrVII 273503 . A G 6285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=250;Dels=0.00;FS=3.919;HaplotypeScore=23.6992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.035;QD=25.14;ReadPosRankSum=1.704;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:6285,652,0 chrVII 274142 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.9439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.40;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3767,382,0 chrVII 274448 . A C 2264 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.35;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2297,240,0 chrVII 275009 . T C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=181;Dels=0.00;FS=3.004;HaplotypeScore=14.2798;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.913;QD=22.76;ReadPosRankSum=2.422;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4120,435,0 chrVII 275322 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3611,355,0 chrVII 275701 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.93;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3393,354,0 chrVII 275758 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.85;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3134,327,0 chrVII 275782 . T C 2624 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.51;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2657,279,0 chrVII 276180 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.72;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3708,367,0 chrVII 276276 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4148,409,0 chrVII 276379 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3134,327,0 chrVII 276429 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3249,333,0 chrVII 276488 . G T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3377,351,0 chrVII 276571 . G A 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.295;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=9.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.552;QD=23.34;ReadPosRankSum=-0.526;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3207,310,0 chrVII 278618 . C G 1757 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.07;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1790,183,0 chrVII 280080 . A C 50.97 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=144.8074;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=0.98;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:9:83,9,0 chrVII 280134 . C A 541 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=7.21;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:57:574,57,0 chrVII 280135 . T A 617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=82;Dels=0.00;FS=10.441;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.827;QD=7.52;ReadPosRankSum=2.179;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:66:650,66,0 chrVII 284212 . C G 2372 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2405,249,0 chrVII 284855 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.44;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3911,414,0 chrVII 286047 . C T 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.029;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.321;QD=21.71;ReadPosRankSum=0.969;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1314,141,0 chrVII 286048 . A C 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.323;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.263;QD=21.02;ReadPosRankSum=0.910;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1294,141,0 chrVII 286154 . G C 2091 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2124,219,0 chrVII 286247 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.85;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3032,298,0 chrVII 286632 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3145,322,0 chrVII 286703 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.5256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3510,355,0 chrVII 287266 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.91;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3291,331,0 chrVII 288473 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5191;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.26;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:3053,304,0 chrVII 288830 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4334,427,0 chrVII 289212 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4400,466,0 chrVII 290162 . G C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.99;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4199,442,0 chrVII 291088 . C G 6442.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=27.4581;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.95;SB=-3.579e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:6442,667,0 chrVII 291494 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=26.20;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2915,303,0 chrVII 291643 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=91.6606;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.659;QD=19.44;ReadPosRankSum=1.671;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2249,243,0 chrVII 291653 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=117;Dels=0.00;FS=8.055;HaplotypeScore=105.6956;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=-0.461;QD=0.32;ReadPosRankSum=3.351;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:9:70,9,0 chrVII 291925 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5310;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.722;QD=24.68;ReadPosRankSum=1.711;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4147,441,0 chrVII 291992 . G A 4412.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4412,457,0 chrVII 292462 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3855,400,0 chrVII 293143 . T G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1708;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.533;QD=22.24;ReadPosRankSum=1.710;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3470,355,0 chrVII 293155 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;DP=151;Dels=0.01;FS=9.855;HaplotypeScore=22.7681;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.082;QD=20.38;ReadPosRankSum=2.599;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3110,319,0 chrVII 293254 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.252;QD=20.99;ReadPosRankSum=1.703;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2510,264,0 chrVII 293255 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.72;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2618,261,0 chrVII 294111 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2454,243,0 chrVII 294404 . T C 5245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=220;Dels=0.00;FS=7.431;HaplotypeScore=22.1206;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.370;QD=23.84;ReadPosRankSum=3.738;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:5,215:220:99:5245,550,0 chrVII 294462 . A G 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=232;Dels=0.00;FS=6.154;HaplotypeScore=16.8359;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.260;QD=23.78;ReadPosRankSum=2.322;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5516,571,0 chrVII 295605 . C G 1348 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.74;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1381,147,0 chrVII 297533 . T A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.37;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4926,496,0 chrVII 298874 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.44;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3543,364,0 chrVII 299216 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=152;Dels=0.00;FS=5.836;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.166;QD=22.67;ReadPosRankSum=2.888;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3446,366,0 chrVII 299249 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4016;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.52;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3947,394,0 chrVII 299630 . C G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4525,466,0 chrVII 299664 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3590,367,0 chrVII 299945 . T A 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.776;QD=23.82;ReadPosRankSum=1.690;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3882,411,0 chrVII 300190 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.17;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4553,448,0 chrVII 300493 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=7.123;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.724;QD=24.93;ReadPosRankSum=2.399;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2451,258,0 chrVII 300952 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.866;QD=24.15;ReadPosRankSum=1.664;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3671,387,0 chrVII 301018 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=163;Dels=0.00;FS=9.072;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.787;QD=23.32;ReadPosRankSum=3.307;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3801,399,0 chrVII 301042 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.33;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3841,414,0 chrVII 301132 . G C 3413.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3413,357,0 chrVII 301260 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.35;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3955,394,0 chrVII 301324 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.99;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3299,331,0 chrVII 301405 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.1732;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.708;QD=25.01;ReadPosRankSum=1.634;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3527,369,0 chrVII 301525 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3559,361,0 chrVII 301819 . G T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.08;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3787,376,0 chrVII 301891 . A T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.40;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3276,325,0 chrVII 302104 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.928;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.893;QD=20.88;ReadPosRankSum=2.417;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3165,342,0 chrVII 302319 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.85;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2889,294,0 chrVII 302394 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.649;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.486;QD=24.66;ReadPosRankSum=1.632;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3452,360,0 chrVII 302483 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.44;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2494,264,0 chrVII 302788 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.89;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3403,334,0 chrVII 303261 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2981,304,0 chrVII 303645 . T C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;MQRankSum=-0.909;QD=23.17;ReadPosRankSum=1.656;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4193,442,0 chrVII 303887 . C T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.44;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5133,514,0 chrVII 304107 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.03;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3379,348,0 chrVII 304214 . T A 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-1.141;QD=24.09;ReadPosRankSum=1.676;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2996,298,0 chrVII 304566 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3702,385,0 chrVII 304609 . A T 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=4.851;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.934;QD=24.82;ReadPosRankSum=1.711;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4095,418,0 chrVII 305928 . G C 4626.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.2023;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.35;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,202:207:99:4626,501,0 chrVII 306050 . A G 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=7.106;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.876;QD=24.35;ReadPosRankSum=2.373;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4700,493,0 chrVII 306650 . C T 7768.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.72;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:7768,775,0 chrVII 306965 . G A 4929.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.8186;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.47;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4929,496,0 chrVII 307064 . C G 1537 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.29;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1570,162,0 chrVII 307194 . A G 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.228;DP=11;Dels=0.00;FS=7.123;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=1.398;QD=6.41;ReadPosRankSum=-2.520;SB=-4.851e+01 GT:AD:DP:GQ:PL 1/1:4,7:11:12:103,12,0 chrVII 307197 . T C 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.017;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=1.368;QD=3.35;ReadPosRankSum=-2.017;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:4,4:8:6:58,6,0 chrVII 307499 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.338;QD=25.89;ReadPosRankSum=0.839;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4117,404,0 chrVII 307742 . T C 6486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=258;Dels=0.00;FS=6.528;HaplotypeScore=15.8174;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.321;QD=25.14;ReadPosRankSum=2.392;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:6486,694,0 chrVII 307868 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.3042;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.07;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5423,541,0 chrVII 308800 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3593,370,0 chrVII 309574 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.451;QD=25.22;ReadPosRankSum=1.710;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4035,424,0 chrVII 310446 . C G 3795.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.47;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3795,391,0 chrVII 310527 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=26.06;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3857,391,0 chrVII 310538 . A T 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.544;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.247;QD=24.31;ReadPosRankSum=1.709;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3598,381,0 chrVII 310899 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.90;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3367,340,0 chrVII 311272 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=32.5339;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.12;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4937,484,0 chrVII 311762 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.28;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3837,405,0 chrVII 311795 . A T 3056 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.26;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3089,307,0 chrVII 312743 . T G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.893;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.538;QD=23.68;ReadPosRankSum=1.704;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2993,312,0 chrVII 312897 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.79;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2471,246,0 chrVII 312966 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2529,258,0 chrVII 314032 . A G 5148.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.3365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5148,541,0 chrVII 314398 . A G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.299;QD=23.76;ReadPosRankSum=1.636;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1744,183,0 chrVII 314428 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.880;QD=23.44;ReadPosRankSum=1.675;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1486,156,0 chrVII 314617 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.06;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2764,285,0 chrVII 315021 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9933;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.64;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4312,456,0 chrVII 315309 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.48;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3648,381,0 chrVII 315504 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8166;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.673;QD=22.53;ReadPosRankSum=1.857;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3119,330,0 chrVII 316175 . G A 5655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.466;QD=26.93;ReadPosRankSum=-1.249;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:5655,540,0 chrVII 316588 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2455,261,0 chrVII 318110 . G C 1877 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.61;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1910,207,0 chrVII 318476 . C A 2645 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.27;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2678,273,0 chrVII 318614 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.97;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3521,369,0 chrVII 319645 . G C 1917.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=102;Dels=0.00;FS=62.893;HaplotypeScore=13.5642;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=6.694;QD=18.79;ReadPosRankSum=-0.805;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:20,81:102:99:1947,0,149 chrVII 320036 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.98;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3202,322,0 chrVII 320310 . A T 3197 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=25.99;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3230,333,0 chrVII 320828 . T C 4639.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.21;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4639,481,0 chrVII 321024 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.65;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3111,307,0 chrVII 321972 . T A 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=6.284;HaplotypeScore=14.5649;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.750;QD=24.57;ReadPosRankSum=2.304;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4546,454,0 chrVII 323662 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.35;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3397,360,0 chrVII 325250 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.45;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2894,289,0 chrVII 326082 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.93;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1730,171,0 chrVII 327897 . A T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5398;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5111,508,0 chrVII 328805 . G A 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.205;QD=25.25;ReadPosRankSum=1.167;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2356,243,0 chrVII 329109 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=2.757;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.264;QD=24.43;ReadPosRankSum=2.421;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4227,436,0 chrVII 332484 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.186;QD=23.46;ReadPosRankSum=1.648;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3895,403,0 chrVII 334383 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3186,313,0 chrVII 334704 . T C 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=2.790;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-2.120;QD=20.50;ReadPosRankSum=2.372;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2636,273,0 chrVII 334767 . T A 2401 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=15.49;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2434,243,0 chrVII 334768 . T G 2356 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=3.012;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.120;QD=15.30;ReadPosRankSum=2.418;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2389,246,0 chrVII 334769 . T A 2390 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.192;QD=15.52;ReadPosRankSum=1.709;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2423,240,0 chrVII 334770 . T A 2389 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.31;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2422,246,0 chrVII 336839 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.41;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2093,219,0 chrVII 336889 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2316,243,0 chrVII 337273 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.92;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2855,291,0 chrVII 338951 . T A 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.952;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.122;QD=26.16;ReadPosRankSum=1.689;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4159,418,0 chrVII 339606 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.98;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2969,312,0 chrVII 340285 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.10;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3524,349,0 chrVII 342051 . A G 2615 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2648,273,0 chrVII 343639 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.0436;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.91;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4301,433,0 chrVII 347577 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.443;HaplotypeScore=10.8121;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.392;QD=26.36;ReadPosRankSum=1.479;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3638,376,0 chrVII 348160 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;DP=12;Dels=0.00;FS=25.185;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=39.84;MQ0=0;MQRankSum=-1.398;QD=2.83;ReadPosRankSum=-0.896;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:4,7:12:64:64,0,97 chrVII 348161 . A T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DP=13;Dels=0.00;FS=28.543;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=41.74;MQ0=0;MQRankSum=-0.849;QD=2.69;ReadPosRankSum=-1.157;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:4,9:13:65:65,0,96 chrVII 348923 . T G 2328 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2361,255,0 chrVII 350521 . T A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.602;QD=20.72;ReadPosRankSum=1.689;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1691,171,0 chrVII 351063 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.0218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.19;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3509,367,0 chrVII 351511 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3233,339,0 chrVII 352951 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=5.523;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.858;QD=24.87;ReadPosRankSum=1.700;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2694,282,0 chrVII 353297 . G C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.0931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3249,336,0 chrVII 353777 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.34;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2576,253,0 chrVII 353852 . G T 2796 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2829,291,0 chrVII 353915 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.41;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2885,303,0 chrVII 353981 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=26.11;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3290,328,0 chrVII 354128 . G T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.83;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3302,328,0 chrVII 354145 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.08;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3056,318,0 chrVII 354206 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.99;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2816,280,0 chrVII 354230 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.50;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2759,288,0 chrVII 354275 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.75;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2877,297,0 chrVII 354432 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.5982;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=17.47;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2252,228,0 chrVII 354534 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.92;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3144,307,0 chrVII 354732 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.29;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3547,358,0 chrVII 354740 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8537;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.75;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3480,346,0 chrVII 354828 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.98;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4937,514,0 chrVII 354898 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.372;QD=24.69;ReadPosRankSum=1.711;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4025,421,0 chrVII 355076 . A C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.067;QD=21.70;ReadPosRankSum=1.688;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3385,349,0 chrVII 355078 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.637;QD=21.28;ReadPosRankSum=1.687;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3298,354,0 chrVII 355088 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=6.083;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=0.061;QD=20.69;ReadPosRankSum=2.958;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3435,357,0 chrVII 355098 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.144;QD=20.03;ReadPosRankSum=1.650;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3365,348,0 chrVII 355292 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=25.57;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4653,460,0 chrVII 355706 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.57;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3666,382,0 chrVII 355780 . G C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.22;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3682,390,0 chrVII 355928 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.50;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5380,565,0 chrVII 356393 . A T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.853;QD=25.73;ReadPosRankSum=1.652;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3345,331,0 chrVII 357041 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2087,210,0 chrVII 357335 . A G 3115 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.18;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3148,336,0 chrVII 357841 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.566;QD=24.14;ReadPosRankSum=1.632;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5021,535,0 chrVII 358124 . A G 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-7.351;DP=154;Dels=0.01;FS=18.725;HaplotypeScore=161.4632;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.458;QD=7.85;ReadPosRankSum=-7.570;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:77,76:153:99:1242,132,0 chrVII 358656 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.89;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2756,274,0 chrVII 358861 . T G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.40;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4141,436,0 chrVII 360498 . A G 5034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.167;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.765;QD=25.55;ReadPosRankSum=1.644;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5034,517,0 chrVII 360816 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5071;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.38;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3706,385,0 chrVII 361107 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=3.369;HaplotypeScore=12.4233;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.012;QD=24.23;ReadPosRankSum=1.698;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4919,523,0 chrVII 361541 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.92;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3971,394,0 chrVII 361547 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=3.035;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.722;QD=22.43;ReadPosRankSum=2.375;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3701,382,0 chrVII 361880 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2510,255,0 chrVII 362066 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1616,162,0 chrVII 362321 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2955,312,0 chrVII 362516 . A T 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.327;QD=24.63;ReadPosRankSum=1.839;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4187,444,0 chrVII 364120 . G C 1323 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.35;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1356,141,0 chrVII 364650 . C G 1018 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=25;QD=12.89;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1051,111,0 chrVII 365023 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=25.35;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3253,342,0 chrVII 365076 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=27.32;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3147,316,0 chrVII 365576 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1599,159,0 chrVII 365727 . A G 2076 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2109,216,0 chrVII 366235 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.19;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1772,177,0 chrVII 366323 . C G 2355 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2388,246,0 chrVII 366762 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.762;HaplotypeScore=7.8198;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.405;QD=20.87;ReadPosRankSum=1.700;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2287,237,0 chrVII 367697 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.49;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2799,288,0 chrVII 367741 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2700,276,0 chrVII 367828 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2513,249,0 chrVII 368346 . A C 5971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=254;Dels=0.00;FS=5.892;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=23.51;ReadPosRankSum=2.830;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:5971,648,0 chrVII 368495 . T G 5289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=220;Dels=0.00;FS=17.625;HaplotypeScore=21.0991;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=1.028;QD=24.04;ReadPosRankSum=3.412;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:4,214:219:99:5289,553,0 chrVII 369167 . G A 6442.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.07;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6442,637,0 chrVII 369600 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.939;QD=26.82;ReadPosRankSum=1.669;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4479,457,0 chrVII 369666 . G T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3822,376,0 chrVII 369881 . C A 2974 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3007,301,0 chrVII 370360 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.950;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.104;QD=24.58;ReadPosRankSum=1.686;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3662,384,0 chrVII 370476 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1507;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.65;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4104,424,0 chrVII 370641 . G T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.48;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4052,406,0 chrVII 370996 . T C 5531.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.05;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5531,577,0 chrVII 371489 . T G 6362.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=17.1530;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.65;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6362,643,0 chrVII 372033 . G C 5053.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5036;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.78;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5053,532,0 chrVII 372223 . T G 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=275;Dels=0.00;FS=8.031;HaplotypeScore=13.0739;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.524;QD=23.15;ReadPosRankSum=2.405;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:6365,655,0 chrVII 372417 . G A 5528.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.6465;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.08;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5528,550,0 chrVII 372717 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4385,433,0 chrVII 373552 . A T 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.135;QD=25.49;ReadPosRankSum=1.710;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3925,394,0 chrVII 373624 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3810,376,0 chrVII 373713 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.478;QD=24.44;ReadPosRankSum=1.712;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4252,439,0 chrVII 374567 . T C 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=180;Dels=0.00;FS=2.843;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.389;QD=23.20;ReadPosRankSum=2.381;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4176,436,0 chrVII 374582 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=2.741;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.249;QD=22.66;ReadPosRankSum=2.404;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3694,384,0 chrVII 375494 . G T 5709.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.8185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5709,595,0 chrVII 376112 . T A 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.995;QD=26.63;ReadPosRankSum=1.658;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3755,370,0 chrVII 377199 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.754;QD=23.12;ReadPosRankSum=1.668;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3791,402,0 chrVII 377882 . G A 6384.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=27.05;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6384,646,0 chrVII 378078 . C A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.51;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4532,457,0 chrVII 379743 . A G 2091 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.12;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2124,231,0 chrVII 380368 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=129;Dels=0.00;FS=2.581;HaplotypeScore=16.2128;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.161;QD=23.43;ReadPosRankSum=2.411;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,124:129:99:3056,296,0 chrVII 380428 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.06;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3040,309,0 chrVII 380670 . A T 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.569;QD=23.76;ReadPosRankSum=1.707;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3327,337,0 chrVII 381517 . C G 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=15.2848;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.83;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1845,192,0 chrVII 383328 . C G 2726 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.91;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2759,291,0 chrVII 383573 . G T 5732.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6149;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.05;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5732,571,0 chrVII 384239 . T C 6863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=292;Dels=0.00;FS=3.436;HaplotypeScore=17.2263;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.869;QD=23.50;ReadPosRankSum=1.720;SB=-3.673e+03 GT:AD:DP:GQ:PL 1/1:1,288:292:99:6863,709,0 chrVII 385041 . A C 5466.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.68;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5466,571,0 chrVII 385519 . T C 2373 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.818;DP=174;Dels=0.00;FS=4.106;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=3;MQRankSum=5.423;QD=13.64;ReadPosRankSum=-1.483;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:16,158:174:99:2406,141,0 chrVII 385522 . G T 2223 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=4.131;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=3;MQRankSum=5.397;QD=13.08;ReadPosRankSum=-2.279;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:16,154:170:99:2256,122,0 chrVII 385525 . A G 1926 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.261;DP=161;Dels=0.00;FS=5.754;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=3;MQRankSum=4.616;QD=11.96;ReadPosRankSum=-2.475;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:17,144:161:96:1959,96,0 chrVII 385531 . C T 1789 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=156;Dels=0.00;FS=4.027;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=3;MQRankSum=5.166;QD=11.47;ReadPosRankSum=-4.610;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:16,140:156:72:1822,72,0 chrVII 385534 . C T 1575 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.641;DP=153;Dels=0.00;FS=2.477;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=3;MQRankSum=5.090;QD=10.29;ReadPosRankSum=-4.916;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:16,137:153:63:1608,63,0 chrVII 385540 . A G 1446 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.702;DP=141;Dels=0.00;FS=2.416;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=3;MQRankSum=4.742;QD=10.26;ReadPosRankSum=-4.348;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:17,124:141:49:1479,49,0 chrVII 385542 . T C 1379 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=3;MQRankSum=3.598;QD=9.64;ReadPosRankSum=-3.510;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:18,125:143:48:1412,48,0 chrVII 385555 . C A 1140.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.384;DP=128;Dels=0.00;FS=1.118;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=3;MQRankSum=4.970;QD=8.91;ReadPosRankSum=-1.654;SB=-8.732e+02 GT:AD:DP:GQ:PL 1/1:16,112:128:16:1173,16,0 chrVII 385570 . T C 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.125;DP=130;Dels=0.00;FS=1.133;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=3;MQRankSum=4.744;QD=10.76;ReadPosRankSum=1.428;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:16,114:130:38:1432,38,0 chrVII 386539 . T C 3885.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=250;Dels=0.00;FS=3.265;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=1;MQRankSum=1.014;QD=15.54;ReadPosRankSum=1.704;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,245:250:99:3885,403,0 chrVII 386548 . C A 2923 SnpCluster AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=1;QD=11.88;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:2956,342,0 chrVII 386549 . A C 2951 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=1;MQRankSum=-1.533;QD=12.04;ReadPosRankSum=1.718;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:2984,345,0 chrVII 386557 . A C 3084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.893;DP=250;Dels=0.00;FS=2.009;HaplotypeScore=3.6533;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=1;MQRankSum=-0.752;QD=12.34;ReadPosRankSum=3.153;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:4,245:250:99:3117,301,0 chrVII 386563 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=246;Dels=0.00;FS=6.368;HaplotypeScore=5.2370;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=1;MQRankSum=-0.348;QD=11.82;ReadPosRankSum=2.429;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:2940,324,0 chrVII 386581 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=1;QD=14.29;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:3373,340,0 chrVII 386593 . C T 3217.04 SnpCluster AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=1;QD=14.11;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:3250,328,0 chrVII 386596 . C T 2983 SnpCluster AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=1;QD=13.20;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3016,324,0 chrVII 386599 . C T 3072 SnpCluster AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=1;QD=13.65;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:3105,307,0 chrVII 386608 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=1;QD=14.15;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:3174,325,0 chrVII 386942 . A T 5428.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;DP=258;Dels=0.00;FS=23.817;HaplotypeScore=21.8642;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=23;MQRankSum=3.203;QD=21.04;ReadPosRankSum=0.341;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:11,247:258:99:5428,503,0 chrVII 386978 . C G 4337.01 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=17;QD=16.06;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,262:270:99:4337,471,0 chrVII 386979 . G C 4390.01 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=15;QD=16.26;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,263:270:99:4390,471,0 chrVII 387977 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.46;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4125,424,0 chrVII 389105 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.68;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4517,445,0 chrVII 390472 . C G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.98;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4111,430,0 chrVII 390484 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.306;DP=180;Dels=0.00;FS=3.184;HaplotypeScore=6.5317;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.635;QD=19.86;ReadPosRankSum=1.326;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3575,352,0 chrVII 390921 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.035;QD=26.31;ReadPosRankSum=1.665;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4051,424,0 chrVII 391138 . G T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.09;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3965,400,0 chrVII 391186 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.302;QD=24.19;ReadPosRankSum=1.631;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3338,363,0 chrVII 391249 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.90;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4118,412,0 chrVII 391279 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.345;HaplotypeScore=10.0562;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.171;QD=24.79;ReadPosRankSum=1.711;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4040,415,0 chrVII 391660 . C T 4851.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4851,487,0 chrVII 392315 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=197;Dels=0.00;FS=9.011;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.416;QD=23.19;ReadPosRankSum=3.308;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:4568,487,0 chrVII 392453 . A C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.260;QD=24.62;ReadPosRankSum=1.710;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3964,415,0 chrVII 394511 . T A 2048 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.9720;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=13.84;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2081,213,0 chrVII 395106 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.55;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3334,328,0 chrVII 395241 . C G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.5827;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.88;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4037,421,0 chrVII 395359 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.84;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4273,430,0 chrVII 395734 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.97;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1758,189,0 chrVII 395752 . G C 1537 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=16.53;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1570,165,0 chrVII 395788 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.42;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1488,156,0 chrVII 395803 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.52;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1515,153,0 chrVII 395815 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=5.337;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.080;QD=17.42;ReadPosRankSum=2.828;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:1357,141,0 chrVII 395869 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.56;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1616,159,0 chrVII 395882 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.18;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1643,165,0 chrVII 395980 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.59;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2134,216,0 chrVII 396018 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4410;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.527;QD=26.83;ReadPosRankSum=1.707;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3702,387,0 chrVII 396062 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.751;QD=27.55;ReadPosRankSum=1.703;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3333,348,0 chrVII 396092 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.41;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2450,243,0 chrVII 396110 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.42;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1789,186,0 chrVII 396170 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=137;Dels=0.00;FS=6.117;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.135;QD=21.59;ReadPosRankSum=2.378;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2991,312,0 chrVII 396232 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.27;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3679,390,0 chrVII 396235 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.21;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3806,379,0 chrVII 396269 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.553;DP=117;Dels=0.00;FS=7.799;HaplotypeScore=15.7007;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.914;QD=18.97;ReadPosRankSum=3.763;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:5,109:117:99:2252,240,0 chrVII 396365 . G A 5611.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=27.50;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5611,553,0 chrVII 396575 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=7.494;HaplotypeScore=10.1955;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.257;QD=20.52;ReadPosRankSum=2.425;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4022,418,0 chrVII 396581 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.29;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4213,421,0 chrVII 397448 . T A 5711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=224;Dels=0.00;FS=6.028;HaplotypeScore=14.9439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.565;QD=25.50;ReadPosRankSum=2.924;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5711,568,0 chrVII 397690 . G C 3277.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3277,336,0 chrVII 398081 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.25;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3637,393,0 chrVII 398572 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.34;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4206,421,0 chrVII 399014 . T C 4910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.3401;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.692;QD=22.52;ReadPosRankSum=0.356;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:4,214:218:99:4910,483,0 chrVII 399032 . G A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.8733;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.06;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5073,543,0 chrVII 399494 . T C 5709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.124;DP=243;Dels=0.00;FS=19.242;HaplotypeScore=17.8746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.861;QD=23.49;ReadPosRankSum=4.172;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:6,234:243:99:5709,595,0 chrVII 399537 . T A 6337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.2648;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.007;QD=24.10;ReadPosRankSum=1.666;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6337,637,0 chrVII 400049 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.05;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3512,361,0 chrVII 400162 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2515,267,0 chrVII 400387 . A G 466 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=25.89;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:51:499,51,0 chrVII 400432 . A G 411 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:444,45,0 chrVII 401117 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.020;QD=23.84;ReadPosRankSum=1.708;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3480,361,0 chrVII 401617 . G T 1003 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=25.07;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1036,105,0 chrVII 401621 . T G 785 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=22.43;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:818,84,0 chrVII 405406 . A G 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=79.3525;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,96:96:9:89,9,0 chrVII 405409 . G T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=79.3525;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.49;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,96:96:9:79,9,0 chrVII 405414 . A T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=79.3525;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.51;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,81:81:9:73,9,0 chrVII 405432 . C T 230.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.50;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,92:92:27:263,27,0 chrVII 405433 . T A 222.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.391;QD=2.39;ReadPosRankSum=1.695;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,92:93:27:255,27,0 chrVII 405437 . G C 255 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=2.50;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:30:288,30,0 chrVII 405448 . T A 538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=92.1426;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;MQRankSum=-0.974;QD=4.68;ReadPosRankSum=2.939;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:60:571,60,0 chrVII 405567 . G T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=25.19;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3754,376,0 chrVII 405713 . T C 68.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=135;Dels=0.00;FS=4.777;HaplotypeScore=111.9528;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=1.544;QD=0.51;ReadPosRankSum=3.513;SB=-1.161e+03 GT:AD:DP:GQ:PL 0/1:5,130:135:5:98,0,5 chrVII 405802 . A G 4996.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4996,523,0 chrVII 405892 . T C 5531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.703;DP=238;Dels=0.00;FS=16.126;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.480;QD=23.24;ReadPosRankSum=4.745;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:8,229:238:99:5531,586,0 chrVII 406503 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3488,346,0 chrVII 407307 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=6.061;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.113;QD=23.82;ReadPosRankSum=2.914;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3620,370,0 chrVII 407376 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=6.634;HaplotypeScore=18.9141;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.127;QD=23.18;ReadPosRankSum=2.423;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4265,456,0 chrVII 407454 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.6503;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.04;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4583,457,0 chrVII 408003 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.53;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4032,397,0 chrVII 408316 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=191;Dels=0.00;FS=2.964;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.247;QD=24.80;ReadPosRankSum=2.398;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4736,499,0 chrVII 408708 . G A 3610.01 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=5.6257;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.17;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3610,387,0 chrVII 408709 . A C 3623.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=179;Dels=0.00;FS=9.079;HaplotypeScore=5.6257;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.786;QD=20.24;ReadPosRankSum=3.294;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3623,387,0 chrVII 408716 . C G 3849.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.27;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3849,394,0 chrVII 408767 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.45;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3701,370,0 chrVII 408864 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.96;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3375,340,0 chrVII 408942 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.72;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2903,295,0 chrVII 409654 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3076,304,0 chrVII 409886 . C G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.00;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3550,369,0 chrVII 409966 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.744;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.184;QD=23.77;ReadPosRankSum=2.413;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3266,342,0 chrVII 410080 . G A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.07;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4641,463,0 chrVII 410159 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4602;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.17;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4480,451,0 chrVII 410219 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.02;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4213,433,0 chrVII 410294 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.93;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3015,312,0 chrVII 410420 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.57;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2244,222,0 chrVII 410453 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.12;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2759,291,0 chrVII 410531 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.62;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3597,381,0 chrVII 411461 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.20;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3478,358,0 chrVII 411573 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=8.530;HaplotypeScore=12.2508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.757;QD=26.37;ReadPosRankSum=-1.185;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3666,367,0 chrVII 411872 . A C 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=185;Dels=0.00;FS=7.328;HaplotypeScore=15.9695;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.228;QD=23.54;ReadPosRankSum=2.382;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4355,451,0 chrVII 412277 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=78.8980;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.58;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1932,204,0 chrVII 412400 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.13;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2624,261,0 chrVII 412413 . A T 2457 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.18;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2490,246,0 chrVII 412477 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.58;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2179,216,0 chrVII 412619 . A C 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.274;QD=18.51;ReadPosRankSum=1.672;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1088,117,0 chrVII 412625 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=34.7549;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=18.28;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:892,99,0 chrVII 412672 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=15.4209;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.157;QD=22.24;ReadPosRankSum=1.642;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1768,186,0 chrVII 412771 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.16;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,113:118:99:2648,285,0 chrVII 412810 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=130;Dels=0.00;FS=24.865;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.023;QD=23.97;ReadPosRankSum=2.946;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:3,126:130:99:3149,336,0 chrVII 412828 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.69;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3293,328,0 chrVII 412864 . T A 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.997;DP=163;Dels=0.00;FS=7.245;HaplotypeScore=5.0302;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-1.150;QD=18.78;ReadPosRankSum=3.583;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:6,157:163:99:3094,327,0 chrVII 412886 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=162.3734;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.82;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3240,328,0 chrVII 413051 . T C 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=198;Dels=0.00;FS=11.773;HaplotypeScore=12.0286;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.226;QD=24.82;ReadPosRankSum=2.923;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4914,511,0 chrVII 413440 . C T 6987.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.4902;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.52;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6987,685,0 chrVII 413728 . C G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.11;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3340,340,0 chrVII 413797 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.97;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3019,298,0 chrVII 414265 . G A 7848.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=19.4413;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.90;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7848,778,0 chrVII 414479 . C T 6046.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.4638;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.19;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:6046,622,0 chrVII 414527 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.79;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5829,580,0 chrVII 414653 . G A 5133.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5133,514,0 chrVII 414724 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.9594;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.53;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5130,505,0 chrVII 414752 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.2407;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.87;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4068,424,0 chrVII 415307 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2945,292,0 chrVII 415592 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=172;Dels=0.00;FS=2.831;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.778;QD=22.81;ReadPosRankSum=2.406;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:3923,414,0 chrVII 415922 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.17;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3916,412,0 chrVII 416947 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.32;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4030,435,0 chrVII 416956 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.18;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4056,403,0 chrVII 417308 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=3.024;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=1.229;QD=24.32;ReadPosRankSum=2.415;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3502,364,0 chrVII 417363 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3888,409,0 chrVII 417671 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=178;Dels=0.00;FS=6.761;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=25.20;ReadPosRankSum=2.422;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4486,463,0 chrVII 418253 . G A 5662.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5662,565,0 chrVII 418292 . A T 5660.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.0635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5660,562,0 chrVII 418502 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.47;ReadPosRankSum=1.705;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3060,324,0 chrVII 420882 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.99;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3495,361,0 chrVII 421249 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.79;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2611,267,0 chrVII 421297 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2441,240,0 chrVII 422386 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.53;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3583,361,0 chrVII 422434 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3028,336,0 chrVII 422911 . A T 2636 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=26.36;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2669,267,0 chrVII 427479 . C T 6712.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=23.3720;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.42;SB=-3.499e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6712,661,0 chrVII 427600 . A G 4736.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4736,505,0 chrVII 428542 . C G 2641 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2674,276,0 chrVII 428698 . A T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3778,373,0 chrVII 430559 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.03;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2714,297,0 chrVII 431116 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5213;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.22;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4287,453,0 chrVII 431481 . G A 93.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=7.77;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,11:12:15:126,15,0 chrVII 431867 . A G 6528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=264;Dels=0.00;FS=6.524;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.699;QD=24.73;ReadPosRankSum=2.421;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:2,257:264:99:6528,667,0 chrVII 432414 . T C 5241.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.84;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5241,559,0 chrVII 432654 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=25.16;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4176,415,0 chrVII 432677 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.86;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3651,393,0 chrVII 432695 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.80;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3876,403,0 chrVII 433234 . A G 1033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=74;Dels=0.00;FS=10.347;HaplotypeScore=7.7030;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=1.617;QD=13.96;ReadPosRankSum=2.905;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1066,117,0 chrVII 433461 . A T 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.452;QD=16.94;ReadPosRankSum=1.707;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2337,234,0 chrVII 433475 . T C 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.705;QD=15.05;ReadPosRankSum=1.708;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2215,231,0 chrVII 433556 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.49;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3229,336,0 chrVII 433742 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.85;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2704,285,0 chrVII 433844 . T C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=75;Dels=0.00;FS=11.670;HaplotypeScore=47.0128;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.775;QD=17.43;ReadPosRankSum=2.903;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:3,69:75:99:1340,141,0 chrVII 434363 . A T 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.815;QD=25.68;ReadPosRankSum=1.638;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4751,469,0 chrVII 434513 . C A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5249;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.55;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3533,352,0 chrVII 435054 . A G 2659 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2692,291,0 chrVII 435450 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.93;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3000,306,0 chrVII 435530 . T A 2479 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6193;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.07;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2512,264,0 chrVII 435577 . T C 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.243;QD=24.84;ReadPosRankSum=1.667;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2691,285,0 chrVII 435937 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3175,327,0 chrVII 436038 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=27.87;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3707,373,0 chrVII 436063 . A T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.90;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3445,357,0 chrVII 436337 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.73;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1362,138,0 chrVII 437491 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2054,213,0 chrVII 438728 . A T 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.760;QD=18.98;ReadPosRankSum=2.381;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2766,300,0 chrVII 440693 . T A 2036 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=27.51;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2069,216,0 chrVII 440972 . A T 154.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.776;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1967;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.596;QD=1.90;ReadPosRankSum=3.652;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:6,75:81:24:187,24,0 chrVII 440974 . T A 120.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.978;DP=86;Dels=0.00;FS=3.136;HaplotypeScore=8.9854;MLEAC=1;MLEAF=0.500;MQ=55.85;MQ0=0;MQRankSum=1.637;QD=1.40;ReadPosRankSum=4.303;SB=-7.450e+02 GT:AD:DP:GQ:PL 0/1:9,77:86:24:150,0,24 chrVII 442175 . A C 255.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.022;DP=208;Dels=0.00;FS=1.968;HaplotypeScore=9.9564;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=1;MQRankSum=-1.695;QD=1.23;ReadPosRankSum=-4.067;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:148,55:208:99:285,0,3347 chrVII 442184 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.071;HaplotypeScore=21.5385;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=1;MQRankSum=-0.073;QD=20.17;ReadPosRankSum=1.603;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4357,460,0 chrVII 442196 . G A 1645.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DP=214;Dels=0.00;FS=1.730;HaplotypeScore=16.3922;MLEAC=1;MLEAF=0.500;MQ=53.83;MQ0=1;MQRankSum=2.420;QD=7.69;ReadPosRankSum=-2.473;SB=-7.850e+02 GT:AD:DP:GQ:PL 0/1:128,83:214:99:1675,0,1990 chrVII 442299 . C G 6915.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=19.7808;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.35;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:6915,730,0 chrVII 442339 . A G 7050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=301;Dels=0.00;FS=7.678;HaplotypeScore=18.2457;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.070;QD=23.42;ReadPosRankSum=2.392;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:2,295:301:99:7050,769,0 chrVII 442503 . G T 7740.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:7740,808,0 chrVII 442935 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.60;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3125,333,0 chrVII 442968 . A T 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.115;QD=25.03;ReadPosRankSum=1.703;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3037,310,0 chrVII 443007 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2753,288,0 chrVII 443972 . G A 5018.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.2394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5018,505,0 chrVII 444466 . T C 6022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=258;Dels=0.00;FS=8.313;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.692;QD=23.34;ReadPosRankSum=2.383;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:2,255:258:99:6022,628,0 chrVII 446205 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.69;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4496,445,0 chrVII 446235 . A T 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.236;HaplotypeScore=9.0115;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.250;QD=22.87;ReadPosRankSum=1.513;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3613,375,0 chrVII 448106 . T C 5771.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.72;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5771,613,0 chrVII 448929 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=13.44;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:2533,267,0 chrVII 449133 . C T 8718.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=17.7114;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=25.72;SB=-3.719e+03 GT:AD:DP:GQ:PL 1/1:0,338:339:99:8718,878,0 chrVII 449184 . T G 7390.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=27.4517;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.88;SB=-4.114e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7390,810,0 chrVII 449525 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.99;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4417,486,0 chrVII 449549 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=217;Dels=0.00;FS=20.346;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.715;QD=21.55;ReadPosRankSum=3.347;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:4,212:217:99:4676,492,0 chrVII 449586 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=18.13;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3989,417,0 chrVII 449589 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.016;QD=18.69;ReadPosRankSum=1.716;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4131,432,0 chrVII 449637 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.6029;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.72;SB=-3.351e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5658,571,0 chrVII 449763 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=184;Dels=0.00;FS=14.657;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.204;QD=20.54;ReadPosRankSum=3.308;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3780,414,0 chrVII 449769 . C T 4085.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=21.28;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4085,420,0 chrVII 449774 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.795;QD=19.83;ReadPosRankSum=1.966;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3828,402,0 chrVII 449829 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.39;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4478,474,0 chrVII 449895 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.71;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3690,367,0 chrVII 450372 . C G 7429.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=16.1821;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.58;SB=-4.340e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7429,775,0 chrVII 450587 . G A 6037.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=20.5684;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.13;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6037,601,0 chrVII 450770 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.36;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5326,559,0 chrVII 451307 . A G 6077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;DP=246;Dels=0.00;FS=10.128;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.432;QD=24.70;ReadPosRankSum=0.075;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:6077,620,0 chrVII 451672 . T C 7461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=337;Dels=0.00;FS=10.250;HaplotypeScore=27.2051;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.943;QD=22.14;ReadPosRankSum=2.896;SB=-4.226e+03 GT:AD:DP:GQ:PL 1/1:3,334:337:99:7461,796,0 chrVII 451905 . G A 7704.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=14.1849;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.88;SB=-3.776e+03 GT:AD:DP:GQ:PL 1/1:0,368:368:99:7704,817,0 chrVII 451921 . T C 6841.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.85;SB=-3.717e+03 GT:AD:DP:GQ:PL 1/1:0,362:363:99:6841,703,0 chrVII 451937 . C T 6937.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.85;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:0,367:368:99:6937,685,0 chrVII 451955 . G T 6569.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=17.1294;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.20;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:0,382:382:99:6569,661,0 chrVII 452296 . A C 7609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=322;Dels=0.00;FS=2.058;HaplotypeScore=13.7318;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.301;QD=23.63;ReadPosRankSum=2.642;SB=-4.232e+03 GT:AD:DP:GQ:PL 1/1:3,314:322:99:7609,793,0 chrVII 452571 . A G 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=238;Dels=0.00;FS=2.960;HaplotypeScore=22.9079;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.253;QD=23.62;ReadPosRankSum=2.429;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5622,580,0 chrVII 453554 . A G 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=4.398;HaplotypeScore=16.0095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.912;QD=22.68;ReadPosRankSum=1.718;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5580,568,0 chrVII 453585 . G A 5837.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.0761;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.28;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:5837,622,0 chrVII 454799 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.205;QD=23.72;ReadPosRankSum=2.892;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:2049,216,0 chrVII 454822 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.43;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2399,249,0 chrVII 454850 . A C 2337 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.26;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2370,249,0 chrVII 455013 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.98;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3997,412,0 chrVII 455625 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4059,418,0 chrVII 455699 . G A 4722.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.0182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4722,475,0 chrVII 455735 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=3.031;HaplotypeScore=18.7388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.928;QD=22.69;ReadPosRankSum=2.381;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4107,441,0 chrVII 455815 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=165;Dels=0.00;FS=15.874;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.358;QD=24.44;ReadPosRankSum=3.797;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:5,159:165:99:4032,418,0 chrVII 456180 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.74;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3224,333,0 chrVII 456426 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.44;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2756,273,0 chrVII 456674 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.53;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3045,315,0 chrVII 456812 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3699,364,0 chrVII 457022 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1947,198,0 chrVII 457145 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1351,138,0 chrVII 457220 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.70;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2886,289,0 chrVII 457592 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.007;QD=21.54;ReadPosRankSum=2.421;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3684,390,0 chrVII 457631 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=165;Dels=0.00;FS=7.324;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.296;QD=21.08;ReadPosRankSum=2.404;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:3479,358,0 chrVII 457688 . C G 4441.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4441,463,0 chrVII 457721 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.09;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3966,397,0 chrVII 458281 . C T 6124.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.3770;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.94;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6124,610,0 chrVII 458368 . G A 5698.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7444;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.25;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5698,604,0 chrVII 458995 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.51;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2959,292,0 chrVII 459004 . T A 2791 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.83;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2824,280,0 chrVII 459164 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0880;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=27.04;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4570,472,0 chrVII 459352 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.23;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4990,493,0 chrVII 459355 . A G 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=232;Dels=0.00;FS=3.025;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.207;QD=20.46;ReadPosRankSum=2.365;SB=-3.158e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4747,487,0 chrVII 459382 . T G 4705.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.64;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4705,496,0 chrVII 459691 . G C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.14;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3564,367,0 chrVII 459753 . G T 389 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=112.4777;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=2.53;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:45:422,45,0 chrVII 459766 . C T 874 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=5.57;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:907,102,0 chrVII 459767 . T C 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=160;Dels=0.00;FS=4.889;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.808;QD=6.14;ReadPosRankSum=3.404;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:5,155:160:99:1016,117,0 chrVII 459867 . T A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.62;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4457,477,0 chrVII 460066 . T C 5131.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.98;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5131,535,0 chrVII 460296 . T A 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=19.1568;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.099;QD=23.11;ReadPosRankSum=1.622;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3674,370,0 chrVII 460330 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=2.839;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.221;QD=24.55;ReadPosRankSum=2.406;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4149,444,0 chrVII 460447 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9830;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.78;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:5062,505,0 chrVII 460477 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.16;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4470,474,0 chrVII 460726 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.9917;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.98;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4460,466,0 chrVII 460786 . A G 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=215;Dels=0.00;FS=9.216;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.329;QD=23.97;ReadPosRankSum=2.873;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:5154,550,0 chrVII 460823 . C A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4909,490,0 chrVII 460947 . A G 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=208;Dels=0.00;FS=6.255;HaplotypeScore=14.9895;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.694;QD=23.48;ReadPosRankSum=2.355;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4883,505,0 chrVII 461071 . T C 5392.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5392,556,0 chrVII 461146 . A G 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.581;QD=23.85;ReadPosRankSum=1.687;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:1,229:234:99:5581,583,0 chrVII 461612 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.70;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3871,411,0 chrVII 461695 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=2.785;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.327;QD=24.64;ReadPosRankSum=2.391;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4213,439,0 chrVII 461875 . G A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.67;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4647,466,0 chrVII 462190 . A G 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.200;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.517;QD=22.97;ReadPosRankSum=1.683;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4869,517,0 chrVII 462196 . G A 5082.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.91;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5082,502,0 chrVII 463027 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2757,285,0 chrVII 463348 . A G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.496;QD=24.03;ReadPosRankSum=1.706;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3229,342,0 chrVII 463372 . C A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.82;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3331,342,0 chrVII 463981 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=6.114;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.659;QD=25.74;ReadPosRankSum=2.947;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3423,352,0 chrVII 464215 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.537;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.099;QD=22.37;ReadPosRankSum=1.683;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3165,336,0 chrVII 464366 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7669;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.90;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2827,286,0 chrVII 464965 . T C 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.433;QD=22.15;ReadPosRankSum=1.689;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1849,192,0 chrVII 464972 . T C 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.453;QD=21.80;ReadPosRankSum=2.356;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1777,186,0 chrVII 465091 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.71;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3608,381,0 chrVII 465118 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.933;QD=23.81;ReadPosRankSum=1.673;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2819,291,0 chrVII 465214 . G C 3161 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7747;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.89;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3194,330,0 chrVII 465447 . T A 2351 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6594;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.28;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2384,237,0 chrVII 465488 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.31;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2154,213,0 chrVII 465503 . A T 2103 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.61;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2136,219,0 chrVII 465534 . T C 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.973;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.748;QD=20.83;ReadPosRankSum=1.653;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1866,198,0 chrVII 465790 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.31;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1735,174,0 chrVII 465905 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.73;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2374,249,0 chrVII 466029 . A T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3431,343,0 chrVII 466092 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4098,427,0 chrVII 466305 . C T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=21.7055;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.10;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5572,556,0 chrVII 466371 . C T 5677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=231;Dels=0.00;FS=3.550;HaplotypeScore=10.5043;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.522;QD=24.58;ReadPosRankSum=1.717;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5677,549,0 chrVII 466404 . T C 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.319;QD=24.10;ReadPosRankSum=1.700;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5302,547,0 chrVII 466974 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=23.57;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2814,280,0 chrVII 467277 . A T 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.549;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.542;QD=24.31;ReadPosRankSum=1.711;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3963,397,0 chrVII 467379 . G A 4618.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.64;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4618,457,0 chrVII 467387 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.363;QD=20.89;ReadPosRankSum=1.698;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4303,459,0 chrVII 467451 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1139;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.26;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:3755,388,0 chrVII 467473 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.141;QD=19.94;ReadPosRankSum=1.716;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4227,442,0 chrVII 467730 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=1.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:56,6,0 chrVII 467736 . T C 283 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.538;QD=9.76;ReadPosRankSum=1.614;SB=-8.698e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:36:316,36,0 chrVII 468710 . A G 2944 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.95;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2977,306,0 chrVII 470028 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=8.645;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.287;QD=25.41;ReadPosRankSum=2.412;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,127:132:99:3354,351,0 chrVII 470055 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.92;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3102,307,0 chrVII 470499 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=26.34;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3293,325,0 chrVII 470529 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.38;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3040,301,0 chrVII 471171 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.79;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3793,402,0 chrVII 471518 . G T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.7567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3475,346,0 chrVII 471870 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.3119;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.60;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4579,460,0 chrVII 472019 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=2.995;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.734;QD=23.75;ReadPosRankSum=2.417;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3538,378,0 chrVII 472038 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1544;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.06;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4091,421,0 chrVII 472176 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.514;QD=23.56;ReadPosRankSum=1.711;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3887,408,0 chrVII 472215 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.435;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.431;QD=24.31;ReadPosRankSum=1.646;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3938,415,0 chrVII 472372 . C A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4631,492,0 chrVII 472609 . A G 5623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=235;Dels=0.00;FS=6.062;HaplotypeScore=17.1554;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.268;QD=23.93;ReadPosRankSum=2.952;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:3,229:235:99:5623,586,0 chrVII 472821 . G C 5800.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.0737;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.58;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:5800,607,0 chrVII 473079 . G A 5140.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.32;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5140,505,0 chrVII 473502 . T C 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=207;Dels=0.00;FS=3.030;HaplotypeScore=10.2144;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.198;QD=26.00;ReadPosRankSum=2.414;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:5381,550,0 chrVII 473949 . A T 5031.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.01;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.46;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5031,502,0 chrVII 473951 . G T 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=224;Dels=0.00;FS=5.612;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.707;QD=22.10;ReadPosRankSum=2.770;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:4951,493,0 chrVII 474296 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.454;QD=24.43;ReadPosRankSum=1.701;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2794,297,0 chrVII 474400 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2710,271,0 chrVII 474600 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4513,451,0 chrVII 474708 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=208;Dels=0.00;FS=5.637;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.850;QD=22.10;ReadPosRankSum=2.947;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4596,487,0 chrVII 474714 . G A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.33;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4415,466,0 chrVII 474798 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4439,466,0 chrVII 474965 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.63;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4605,457,0 chrVII 475074 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.46;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4445,442,0 chrVII 475388 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.01;FS=5.995;HaplotypeScore=11.0418;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.861;QD=20.25;ReadPosRankSum=1.649;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3463,363,0 chrVII 475390 . A T 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=173;Dels=0.01;FS=2.417;HaplotypeScore=6.2553;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.971;QD=21.54;ReadPosRankSum=2.771;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3726,367,0 chrVII 475414 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.66;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3966,418,0 chrVII 475766 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.699;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.155;QD=25.43;ReadPosRankSum=-0.485;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3840,385,0 chrVII 475858 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3967,394,0 chrVII 476814 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.99;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3205,319,0 chrVII 476820 . A G 3012 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.51;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3045,312,0 chrVII 477384 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.220;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.569;QD=23.76;ReadPosRankSum=1.714;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4562,484,0 chrVII 477678 . G T 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=3.785;HaplotypeScore=9.5629;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.366;QD=25.87;ReadPosRankSum=1.715;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5380,516,0 chrVII 477857 . C T 5720.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.9406;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.93;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5720,609,0 chrVII 478308 . A T 5970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.548;QD=26.42;ReadPosRankSum=1.717;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5970,595,0 chrVII 478509 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3818,382,0 chrVII 478876 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2777,277,0 chrVII 479589 . C T 1138 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=26.47;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1171,117,0 chrVII 480192 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.09;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4756,496,0 chrVII 480234 . T C 5180.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.6200;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.65;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5180,535,0 chrVII 480612 . A G 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=3.593;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.250;QD=26.18;ReadPosRankSum=1.700;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5629,580,0 chrVII 481776 . T C 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=18.7348;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.613;QD=23.77;ReadPosRankSum=1.692;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:6229,652,0 chrVII 482042 . C T 6241.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6241,646,0 chrVII 482421 . A G 5284.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.58;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5284,570,0 chrVII 482446 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.69;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4975,534,0 chrVII 482679 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=124;Dels=0.00;FS=7.853;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.738;QD=19.37;ReadPosRankSum=1.704;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2435,270,0 chrVII 482923 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.55;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:2099,207,0 chrVII 482953 . C G 1890 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.25;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1923,198,0 chrVII 482980 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.166;QD=23.85;ReadPosRankSum=1.685;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1774,186,0 chrVII 483277 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=113;Dels=0.00;FS=11.940;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.082;QD=21.93;ReadPosRankSum=2.882;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:3,109:113:99:2511,261,0 chrVII 483370 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.5063;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.35;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4401,463,0 chrVII 483704 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.56;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4476,445,0 chrVII 484725 . G A 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=98;Dels=0.00;FS=3.380;HaplotypeScore=6.3674;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.813;QD=21.06;ReadPosRankSum=1.237;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2097,231,0 chrVII 484843 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;QD=25.71;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2707,273,0 chrVII 484951 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=26.02;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2219,231,0 chrVII 485217 . A T 2372 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.37;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2405,237,0 chrVII 485223 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.52;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2376,237,0 chrVII 485256 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.88;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2643,276,0 chrVII 485424 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.58;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1565,168,0 chrVII 485796 . T G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.786;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.543;QD=24.78;ReadPosRankSum=1.701;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2784,297,0 chrVII 486003 . T C 2333 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.36;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2366,240,0 chrVII 486391 . G C 3201 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3234,342,0 chrVII 486595 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.43;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3458,346,0 chrVII 486820 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.89;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4490,448,0 chrVII 487057 . C T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.88;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5279,535,0 chrVII 487114 . G A 5852.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.97;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5852,613,0 chrVII 487204 . G C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6426;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.13;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4609,486,0 chrVII 487305 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.75;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3640,364,0 chrVII 487329 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.31;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3502,346,0 chrVII 487652 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=121;Dels=0.00;FS=8.850;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.950;QD=25.51;ReadPosRankSum=3.385;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:3120,322,0 chrVII 487937 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=12.1597;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.49;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2698,265,0 chrVII 489115 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.47;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4508,448,0 chrVII 489423 . A G 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.355;QD=21.73;ReadPosRankSum=1.664;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2228,231,0 chrVII 489481 . A G 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.195;QD=21.42;ReadPosRankSum=1.683;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1554,162,0 chrVII 489693 . T A 1640 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.48;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1673,180,0 chrVII 489734 . T C 2481 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.58;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2514,258,0 chrVII 489810 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=108;Dels=0.00;FS=2.595;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.589;QD=23.13;ReadPosRankSum=2.898;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2531,267,0 chrVII 489944 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=174;Dels=0.00;FS=3.035;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.433;QD=23.22;ReadPosRankSum=2.393;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4040,421,0 chrVII 490077 . C T 4519.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.41;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4519,469,0 chrVII 490117 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0822;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.64;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5127,511,0 chrVII 490298 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.10;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4593,457,0 chrVII 490467 . G A 5127.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.29;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5127,517,0 chrVII 490539 . C G 4258.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.8792;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.02;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4258,442,0 chrVII 490647 . G A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9216;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5491,547,0 chrVII 490786 . C G 3184 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3217,331,0 chrVII 490997 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.38;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3203,322,0 chrVII 491066 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.12;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3217,333,0 chrVII 491171 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=138;Dels=0.00;FS=3.031;HaplotypeScore=12.0443;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.386;QD=22.92;ReadPosRankSum=2.396;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3196,333,0 chrVII 491249 . G C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.52;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4187,436,0 chrVII 491259 . A T 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=9.543;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.131;QD=23.14;ReadPosRankSum=2.288;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4559,457,0 chrVII 491350 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4441;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.42;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3890,385,0 chrVII 491698 . C A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4151,418,0 chrVII 491950 . T C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.297;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.663;QD=24.62;ReadPosRankSum=1.695;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,187:193:99:4751,499,0 chrVII 492059 . C A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.65;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3514,349,0 chrVII 492175 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=16.6217;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.92;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3836,382,0 chrVII 492371 . A C 3036 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.10;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3069,318,0 chrVII 492468 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.52;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3141,310,0 chrVII 492815 . G C 6084.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.7444;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.63;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6084,637,0 chrVII 492864 . A G 7054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=283;Dels=0.00;FS=4.374;HaplotypeScore=9.3611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.958;QD=24.93;ReadPosRankSum=1.658;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:7054,721,0 chrVII 493704 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=8.155;HaplotypeScore=16.7895;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.408;QD=26.03;ReadPosRankSum=2.398;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4998,514,0 chrVII 493751 . C T 5806.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=26.27;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5806,580,0 chrVII 493848 . C T 5418.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=21.3515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:0,232:237:99:5418,547,0 chrVII 493944 . G A 6190.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.5144;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.66;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6190,616,0 chrVII 493949 . C T 6010.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.04;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6010,589,0 chrVII 494079 . A G 5562.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.80;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5562,586,0 chrVII 494624 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.901;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.325;QD=22.80;ReadPosRankSum=2.421;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3898,417,0 chrVII 494636 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.05;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3849,385,0 chrVII 494841 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.36;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3652,379,0 chrVII 494870 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.81;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3444,354,0 chrVII 494885 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.415;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.719;QD=21.68;ReadPosRankSum=2.403;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3468,358,0 chrVII 494918 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.09;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3218,336,0 chrVII 495047 . A C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.411;QD=24.84;ReadPosRankSum=1.707;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3453,366,0 chrVII 496647 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=25.76;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2351,234,0 chrVII 496675 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=25.22;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1975,195,0 chrVII 496768 . C G 922 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.82;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:955,99,0 chrVII 496875 . A G 865 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.654;QD=19.22;ReadPosRankSum=1.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,44:45:93:898,93,0 chrVII 496881 . A G 797 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=34.8164;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:87:830,87,0 chrVII 496909 . T C 481 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=17.81;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:54:514,54,0 chrVII 496948 . A T 109.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=13.66;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:142,15,0 chrVII 497029 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrVII 497046 . A T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrVII 497050 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=3.68;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:57,6,0 chrVII 497059 . T C 77.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=7.05;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:110,12,0 chrVII 497232 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.756;QD=26.83;ReadPosRankSum=1.683;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1938,201,0 chrVII 497405 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=23.18;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2467,243,0 chrVII 497413 . A T 2171 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=77.0484;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.71;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2204,234,0 chrVII 497422 . T A 71.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=8.263;HaplotypeScore=82.1082;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.376;QD=0.75;ReadPosRankSum=2.346;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:12:104,12,0 chrVII 497524 . A C 2700 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.11;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2733,285,0 chrVII 497763 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.3894;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.06;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3618,384,0 chrVII 497968 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.757;QD=24.57;ReadPosRankSum=1.698;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2564,264,0 chrVII 498201 . G C 1929 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.69;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1962,210,0 chrVII 498425 . T G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=117;Dels=0.00;FS=3.015;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.896;QD=24.45;ReadPosRankSum=2.363;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,112:117:99:2894,306,0 chrVII 498521 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=155;Dels=0.00;FS=6.098;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=23.72;ReadPosRankSum=2.955;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3677,381,0 chrVII 498665 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.67;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3117,316,0 chrVII 499429 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=102;Dels=0.00;FS=5.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=2.080;QD=22.71;ReadPosRankSum=2.872;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2349,246,0 chrVII 499455 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.223;QD=23.34;ReadPosRankSum=1.676;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2951,309,0 chrVII 499647 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=26.34;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4320,442,0 chrVII 499817 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.18;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3449,346,0 chrVII 499980 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8253;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.91;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3437,372,0 chrVII 500059 . T G 3114 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.32;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3147,324,0 chrVII 500187 . A G 2605 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.58;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2638,273,0 chrVII 500228 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=24.86;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2668,285,0 chrVII 500260 . C A 2900 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=27.62;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2933,295,0 chrVII 500434 . A G 2853 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.78;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2886,306,0 chrVII 500440 . G T 2726 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=20.81;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2759,285,0 chrVII 500444 . C G 2597 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.98;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2630,273,0 chrVII 500467 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.67;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3010,301,0 chrVII 500745 . G C 3985.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3985,412,0 chrVII 500877 . A T 3154 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=26.50;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3187,316,0 chrVII 501009 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.02;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3837,379,0 chrVII 501547 . A T 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=4.067;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.236;QD=25.23;ReadPosRankSum=1.704;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3187,330,0 chrVII 501606 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=148;Dels=0.00;FS=2.824;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=24.85;ReadPosRankSum=2.383;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3678,382,0 chrVII 501886 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=111;Dels=0.00;FS=7.255;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.951;QD=25.06;ReadPosRankSum=2.360;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2815,288,0 chrVII 502135 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.65;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3969,426,0 chrVII 502282 . G T 5630.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5630,580,0 chrVII 502321 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3920,394,0 chrVII 502398 . T A 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.559;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.792;QD=23.60;ReadPosRankSum=1.683;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3304,342,0 chrVII 502491 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.08;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2295,237,0 chrVII 502807 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.08;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1804,183,0 chrVII 502964 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.98;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2714,282,0 chrVII 502974 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=5.813;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.846;QD=21.03;ReadPosRankSum=2.890;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2935,306,0 chrVII 503498 . T C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=4.003;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.502;QD=24.17;ReadPosRankSum=1.656;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4399,466,0 chrVII 503654 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3551,372,0 chrVII 503685 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=8.7205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.794;QD=24.78;ReadPosRankSum=1.684;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3568,367,0 chrVII 503816 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4275,436,0 chrVII 504168 . G C 4826.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.6390;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.75;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4826,502,0 chrVII 504342 . T A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.41;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4410,439,0 chrVII 504753 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.51;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3659,370,0 chrVII 505867 . A T 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.274;QD=25.74;ReadPosRankSum=1.675;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4710,469,0 chrVII 506019 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2911;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.91;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4708,487,0 chrVII 507086 . A C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=216;Dels=0.00;FS=2.988;HaplotypeScore=21.1701;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.282;QD=22.61;ReadPosRankSum=2.415;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:2,211:216:99:4883,525,0 chrVII 507124 . G A 5044.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.41;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:5044,502,0 chrVII 507154 . T C 5316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.280;QD=25.56;ReadPosRankSum=1.715;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5316,544,0 chrVII 507287 . A T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7131;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.79;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5133,511,0 chrVII 507347 . G A 5015.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=7.3725;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.39;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5015,508,0 chrVII 507742 . T C 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=244;Dels=0.00;FS=5.567;HaplotypeScore=18.9308;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.963;QD=23.93;ReadPosRankSum=2.955;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:5838,616,0 chrVII 508075 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7245;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.16;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3543,367,0 chrVII 508084 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=155;Dels=0.00;FS=6.702;HaplotypeScore=11.4600;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.956;QD=22.99;ReadPosRankSum=2.417;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3564,378,0 chrVII 508201 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=214;Dels=0.00;FS=2.554;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.047;QD=22.08;ReadPosRankSum=2.911;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4726,487,0 chrVII 508206 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.79;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4407,474,0 chrVII 508419 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=203;Dels=0.00;FS=4.970;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.060;QD=21.19;ReadPosRankSum=1.646;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4302,448,0 chrVII 508460 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=24.19;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4500,469,0 chrVII 508488 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=1.248;QD=25.46;ReadPosRankSum=1.713;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4558,475,0 chrVII 508787 . T G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.4334;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.332;QD=21.55;ReadPosRankSum=1.364;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2080,222,0 chrVII 509101 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3512,378,0 chrVII 509895 . T G 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.345;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.962;QD=21.35;ReadPosRankSum=1.668;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,161:167:99:3565,381,0 chrVII 509926 . T A 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.381;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=23.38;ReadPosRankSum=1.710;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3718,388,0 chrVII 510416 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=207;Dels=0.00;FS=2.914;HaplotypeScore=18.3233;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.472;QD=23.14;ReadPosRankSum=2.378;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4790,510,0 chrVII 510553 . A G 6023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=4.580;HaplotypeScore=20.9164;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.590;QD=24.68;ReadPosRankSum=1.704;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:6023,622,0 chrVII 511938 . G A 5236.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.0985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5236,553,0 chrVII 512135 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4539,475,0 chrVII 512279 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.227;QD=22.98;ReadPosRankSum=1.680;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4574,492,0 chrVII 512350 . A T 5371.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.72;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5371,532,0 chrVII 513154 . C A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4609,492,0 chrVII 513253 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=207;Dels=0.00;FS=16.282;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.134;QD=22.57;ReadPosRankSum=3.367;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:4672,478,0 chrVII 513264 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.77;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4532,448,0 chrVII 513303 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.82;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4679,472,0 chrVII 513842 . C T 6507.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.7407;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.34;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6507,649,0 chrVII 514313 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.03;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3805,399,0 chrVII 514414 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=114;Dels=0.00;FS=8.020;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.209;QD=23.54;ReadPosRankSum=3.380;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2716,285,0 chrVII 514497 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=9.395;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.221;QD=23.09;ReadPosRankSum=2.387;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2734,279,0 chrVII 514511 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.24;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2348,240,0 chrVII 514736 . C G 4971.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=27.62;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4971,517,0 chrVII 514934 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=169;Dels=0.00;FS=3.750;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.751;QD=24.31;ReadPosRankSum=1.669;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:4108,421,0 chrVII 515594 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.76;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3421,349,0 chrVII 516638 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.39;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2278,225,0 chrVII 516867 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.47;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3708,385,0 chrVII 519278 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.62;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4480,448,0 chrVII 519381 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.95;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4671,463,0 chrVII 519410 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=236;Dels=0.00;FS=5.929;HaplotypeScore=18.4224;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.628;QD=20.69;ReadPosRankSum=2.936;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:3,232:236:99:4883,511,0 chrVII 519550 . A G 7213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=297;Dels=0.00;FS=2.446;HaplotypeScore=18.4729;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.376;QD=24.29;ReadPosRankSum=1.241;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:3,294:297:99:7213,745,0 chrVII 520131 . C A 4812.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=24.18;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4812,499,0 chrVII 520140 . A G 4316.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=197;Dels=0.00;FS=9.149;HaplotypeScore=4.1753;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.488;QD=21.91;ReadPosRankSum=3.415;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:4,191:197:99:4316,457,0 chrVII 520141 . G C 4376.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.404;QD=22.56;ReadPosRankSum=1.624;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4376,457,0 chrVII 520680 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=4.219;HaplotypeScore=10.0544;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.410;QD=25.59;ReadPosRankSum=1.707;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3582,373,0 chrVII 520898 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2789;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.188;QD=23.80;ReadPosRankSum=1.707;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3403,360,0 chrVII 520942 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.33;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3252,336,0 chrVII 521004 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=142;Dels=0.00;FS=2.586;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.106;QD=23.87;ReadPosRankSum=2.866;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3389,363,0 chrVII 521128 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1892;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.21;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3404,340,0 chrVII 521192 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.3569;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.22;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4489,445,0 chrVII 522131 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3189,316,0 chrVII 522653 . A G 2742 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.44;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2775,288,0 chrVII 522677 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.32;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2691,279,0 chrVII 523190 . G T 3154 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=26.50;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3187,316,0 chrVII 523348 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.62;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2844,285,0 chrVII 523385 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=19.09;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2324,228,0 chrVII 523392 . A G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-1.490;QD=17.70;ReadPosRankSum=1.652;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2316,240,0 chrVII 523412 . A G 2227 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=16.02;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2260,234,0 chrVII 523415 . G T 2306 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=16.35;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2339,231,0 chrVII 523417 . C T 2345 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=16.40;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2378,237,0 chrVII 524176 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.40;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3230,336,0 chrVII 524215 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3774,394,0 chrVII 524258 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=21.9684;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.85;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4370,436,0 chrVII 524356 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.34;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4539,454,0 chrVII 524803 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.38;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2898,303,0 chrVII 524944 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2926,306,0 chrVII 525205 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.68;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3143,324,0 chrVII 525390 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=171;Dels=0.00;FS=6.098;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.269;QD=24.77;ReadPosRankSum=2.421;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4235,442,0 chrVII 525947 . A G 6774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=286;Dels=0.00;FS=3.004;HaplotypeScore=26.1492;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.817;QD=23.69;ReadPosRankSum=2.424;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:2,282:286:99:6774,730,0 chrVII 526005 . A G 6058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.694;DP=246;Dels=0.00;FS=11.807;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.115;QD=24.63;ReadPosRankSum=3.771;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:5,239:246:99:6058,637,0 chrVII 526684 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=5.781;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.634;QD=20.93;ReadPosRankSum=1.667;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2293,240,0 chrVII 526833 . T A 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=93;Dels=0.03;FS=5.313;HaplotypeScore=49.7372;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.362;QD=15.20;ReadPosRankSum=2.966;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1447,159,0 chrVII 527159 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=185;Dels=0.00;FS=9.136;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.052;QD=23.51;ReadPosRankSum=3.403;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4349,457,0 chrVII 529347 . A T 7474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=272;Dels=0.00;FS=5.139;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.109;QD=27.48;ReadPosRankSum=1.719;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:7474,742,0 chrVII 529383 . A G 6807.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.80;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6807,730,0 chrVII 529504 . G A 9712.01 filter AC=2;AF=1.00;AN=2;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=22.3969;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.59;SB=-5.469e+03 GT:AD:DP:GQ:PL 1/1:0,391:395:99:9712,962,0 chrVII 529563 . C T 11507.01 filter AC=2;AF=1.00;AN=2;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=26.4106;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.58;SB=-5.270e+03 GT:AD:DP:GQ:PL 1/1:0,487:488:99:11507,1160,0 chrVII 529630 . A G 9941.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.463;DP=481;Dels=0.00;FS=24.734;HaplotypeScore=12.1205;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.882;QD=20.67;ReadPosRankSum=4.507;SB=-5.822e+03 GT:AD:DP:GQ:PL 1/1:7,472:481:99:9941,1051,0 chrVII 529644 . A T 9408.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.431;DP=447;Dels=0.00;FS=13.024;HaplotypeScore=9.7228;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.535;QD=21.05;ReadPosRankSum=3.404;SB=-6.121e+03 GT:AD:DP:GQ:PL 1/1:4,443:447:99:9408,944,0 chrVII 529812 . G A 9893.01 filter AC=2;AF=1.00;AN=2;DP=490;Dels=0.00;FS=0.000;HaplotypeScore=25.1192;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.19;SB=-5.962e+03 GT:AD:DP:GQ:PL 1/1:0,490:490:99:9893,995,0 chrVII 530016 . A C 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.725;DP=660;Dels=0.00;FS=52.206;HaplotypeScore=318.7837;MLEAC=1;MLEAF=0.500;MQ=42.39;MQ0=0;MQRankSum=-12.423;QD=0.37;ReadPosRankSum=0.649;SB=-1.239e+03 GT:AD:DP:GQ:PL 0/1:415,244:660:99:272,0,5111 chrVII 530018 . C T 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DP=657;Dels=0.00;FS=48.504;HaplotypeScore=323.2347;MLEAC=1;MLEAF=0.500;MQ=42.42;MQ0=0;MQRankSum=-13.479;QD=0.50;ReadPosRankSum=3.898;SB=-1.013e+03 GT:AD:DP:GQ:PL 0/1:442,214:656:99:360,0,4969 chrVII 530034 . A C 6637.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.719;DP=689;Dels=0.00;FS=4.572;HaplotypeScore=81.1884;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=1;MQRankSum=1.593;QD=9.63;ReadPosRankSum=-3.949;SB=-6.397e+03 GT:AD:DP:GQ:PL 1/1:48,639:687:99:6637,665,0 chrVII 530040 . A C 2071.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.389;DP=688;Dels=0.00;FS=60.676;HaplotypeScore=85.7559;MLEAC=1;MLEAF=0.500;MQ=39.25;MQ0=1;MQRankSum=-9.469;QD=3.01;ReadPosRankSum=4.076;SB=-1.818e+03 GT:AD:DP:GQ:PL 0/1:343,344:687:99:2101,0,3067 chrVII 530065 . C T 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.540;DP=463;Dels=0.02;FS=10.972;HaplotypeScore=390.3958;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=0;MQRankSum=-1.999;QD=0.13;ReadPosRankSum=-2.458;SB=-3.850e+02 GT:AD:DP:GQ:PL 0/1:368,71:454:91:91,0,3523 chrVII 530067 . C A 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.184;DP=459;Dels=0.02;FS=14.965;HaplotypeScore=367.5509;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=0;MQRankSum=-2.301;QD=0.35;ReadPosRankSum=-3.951;SB=-5.210e+02 GT:AD:DP:GQ:PL 0/1:363,86:450:99:189,0,3649 chrVII 530071 . A T 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;DP=456;Dels=0.00;FS=16.353;HaplotypeScore=144.2913;MLEAC=1;MLEAF=0.500;MQ=36.74;MQ0=0;MQRankSum=-2.191;QD=0.52;ReadPosRankSum=-5.851;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:365,88:456:99:265,0,3930 chrVII 530076 . T C 191.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;DP=446;Dels=0.00;FS=15.114;HaplotypeScore=26.6779;MLEAC=1;MLEAF=0.500;MQ=37.26;MQ0=0;MQRankSum=-3.946;QD=0.43;ReadPosRankSum=-9.173;SB=-5.540e+02 GT:AD:DP:GQ:PL 0/1:360,86:446:99:221,0,4133 chrVII 530079 . C A 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.578;DP=449;Dels=0.00;FS=18.525;HaplotypeScore=25.8068;MLEAC=1;MLEAF=0.500;MQ=37.95;MQ0=0;MQRankSum=-3.777;QD=0.40;ReadPosRankSum=-11.036;SB=-5.870e+02 GT:AD:DP:GQ:PL 0/1:362,86:449:99:208,0,4113 chrVII 530082 . T C 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.636;DP=446;Dels=0.00;FS=16.885;HaplotypeScore=22.0418;MLEAC=1;MLEAF=0.500;MQ=38.25;MQ0=0;MQRankSum=-3.532;QD=0.41;ReadPosRankSum=-12.887;SB=-5.660e+02 GT:AD:DP:GQ:PL 0/1:360,86:446:99:212,0,4373 chrVII 530308 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=163;Dels=0.00;FS=2.839;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.158;QD=21.12;ReadPosRankSum=2.419;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3442,340,0 chrVII 530472 . A T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.52;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3879,385,0 chrVII 530583 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7744;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.95;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4489,445,0 chrVII 530647 . A G 5772.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.85;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5772,622,0 chrVII 530805 . A T 5209.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.57;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5209,523,0 chrVII 531034 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1348,138,0 chrVII 531080 . T C 485 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=15.16;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,31:32:54:518,54,0 chrVII 531192 . T A 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.606;QD=22.70;ReadPosRankSum=1.646;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:93:941,93,0 chrVII 531481 . T G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.576;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.559;QD=25.11;ReadPosRankSum=1.636;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4519,478,0 chrVII 531684 . A T 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.147;QD=23.04;ReadPosRankSum=1.683;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1669,159,0 chrVII 531741 . A C 1242 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.84;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1275,135,0 chrVII 532771 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2367,249,0 chrVII 532815 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.28;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1684,177,0 chrVII 533594 . T G 3833.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.9201;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.05;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3833,397,0 chrVII 533626 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3255,342,0 chrVII 533803 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.979;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.296;QD=25.90;ReadPosRankSum=1.706;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3522,364,0 chrVII 533973 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=13.213;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.568;QD=15.23;ReadPosRankSum=2.385;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1206,135,0 chrVII 534011 . T C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=9.379;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.999;QD=13.26;ReadPosRankSum=1.666;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,103:106:99:1439,150,0 chrVII 534162 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=7.132;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.689;QD=26.31;ReadPosRankSum=1.695;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2480,261,0 chrVII 534518 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.80;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4050,409,0 chrVII 534684 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.982;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.220;QD=23.44;ReadPosRankSum=2.341;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3221,345,0 chrVII 534707 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.66;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3069,318,0 chrVII 534739 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.78;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3554,364,0 chrVII 534914 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=23.46;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2027,213,0 chrVII 534961 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=5.419;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;MQRankSum=0.703;QD=21.57;ReadPosRankSum=1.698;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2212,225,0 chrVII 534966 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=82.3238;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=21.03;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2199,222,0 chrVII 534988 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=21.26;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1883,189,0 chrVII 535018 . T A 1661 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=20.51;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1694,171,0 chrVII 535120 . A G 2091 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=23.76;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2124,225,0 chrVII 535135 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=23.25;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,174,0 chrVII 535212 . G T 255 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=6;QD=12.75;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:5,15:20:33:288,33,0 chrVII 535692 . A C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.307;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;MQRankSum=-1.397;QD=23.61;ReadPosRankSum=1.676;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1497,159,0 chrVII 541712 . A G 569 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=11.16;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:66:602,66,0 chrVII 541808 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=24.82;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2763,294,0 chrVII 542012 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=128;Dels=0.00;FS=6.407;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.107;QD=23.80;ReadPosRankSum=2.372;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:3080,318,0 chrVII 542099 . A C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=103;Dels=0.00;FS=6.238;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.519;QD=20.93;ReadPosRankSum=2.401;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2189,231,0 chrVII 542100 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.63;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2296,237,0 chrVII 542283 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=26.00;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4472,463,0 chrVII 542757 . A G 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=230;Dels=0.00;FS=13.426;HaplotypeScore=13.5476;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.838;QD=25.64;ReadPosRankSum=3.407;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:5898,601,0 chrVII 543267 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3256,328,0 chrVII 543476 . A T 1952 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1985,198,0 chrVII 543670 . C A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.58;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3428,360,0 chrVII 544219 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.051;QD=22.60;ReadPosRankSum=1.703;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2677,279,0 chrVII 544222 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.25;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2753,274,0 chrVII 544260 . A T 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.002;QD=20.38;ReadPosRankSum=2.401;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2112,216,0 chrVII 544286 . T G 1810 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.57;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1843,189,0 chrVII 544385 . T C 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=0.192;QD=19.98;ReadPosRankSum=1.567;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1312,141,0 chrVII 544396 . A G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=58;Dels=0.00;FS=3.245;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=-0.030;QD=17.79;ReadPosRankSum=1.672;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1065,114,0 chrVII 544465 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.77;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1935,192,0 chrVII 544651 . A C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=7.213;HaplotypeScore=22.8632;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.081;QD=24.49;ReadPosRankSum=2.378;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3355,343,0 chrVII 544686 . T A 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.7044;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.606;QD=24.31;ReadPosRankSum=1.704;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3023,301,0 chrVII 544845 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.18;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2511,264,0 chrVII 544851 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.86;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2416,255,0 chrVII 544864 . C A 2321 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=20.91;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2354,246,0 chrVII 544909 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.28;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2416,246,0 chrVII 544938 . G C 2690 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=23.60;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2723,282,0 chrVII 544952 . T C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=5.339;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.229;QD=23.79;ReadPosRankSum=1.667;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2579,261,0 chrVII 545033 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=24.07;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2633,276,0 chrVII 545099 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=27.45;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2668,265,0 chrVII 545156 . A C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=4.095;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-1.513;QD=21.73;ReadPosRankSum=1.696;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2097,222,0 chrVII 545169 . T A 2570 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=23.80;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2603,258,0 chrVII 545175 . G C 2281 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=20.01;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2314,249,0 chrVII 545191 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=3.038;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-1.308;QD=21.47;ReadPosRankSum=2.397;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3039,318,0 chrVII 545226 . G C 2542 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=18.69;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2575,270,0 chrVII 545236 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=-0.621;QD=19.14;ReadPosRankSum=1.706;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2540,270,0 chrVII 545279 . A T 326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=129;Dels=0.02;FS=3.222;HaplotypeScore=118.3331;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-1.512;QD=2.53;ReadPosRankSum=1.650;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:39:359,39,0 chrVII 545319 . T A 3144 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.28;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3177,319,0 chrVII 545582 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.88;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3042,318,0 chrVII 545825 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.05;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1831,183,0 chrVII 545844 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.050;QD=20.51;ReadPosRankSum=2.372;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1981,207,0 chrVII 545856 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.85;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2262,228,0 chrVII 545954 . C A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=26.20;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3432,346,0 chrVII 546367 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.04;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1507,153,0 chrVII 546385 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;MQRankSum=0.364;QD=10.70;ReadPosRankSum=2.410;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1370,141,0 chrVII 546392 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=114.2768;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=11.67;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1632,162,0 chrVII 546506 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.19;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3051,318,0 chrVII 546634 . T A 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=237;Dels=0.00;FS=2.571;HaplotypeScore=13.8756;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.504;QD=25.94;ReadPosRankSum=2.725;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:6147,604,0 chrVII 548923 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=3.005;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.307;QD=24.84;ReadPosRankSum=2.375;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:4123,427,0 chrVII 548953 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=3.066;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.422;QD=22.84;ReadPosRankSum=1.643;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3609,384,0 chrVII 549148 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=148;Dels=0.00;FS=6.418;HaplotypeScore=14.2583;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.204;QD=22.12;ReadPosRankSum=2.416;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3274,354,0 chrVII 549283 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5857;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3741,370,0 chrVII 549407 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4316,427,0 chrVII 549493 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=179;Dels=0.00;FS=6.094;HaplotypeScore=10.5989;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.011;QD=23.95;ReadPosRankSum=2.903;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:3,173:179:99:4287,459,0 chrVII 549656 . T C 4886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.021;QD=25.45;ReadPosRankSum=1.714;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4886,508,0 chrVII 549847 . C T 5521.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.17;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5521,556,0 chrVII 550438 . A C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.474;QD=23.34;ReadPosRankSum=1.646;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2857,294,0 chrVII 551356 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4345,468,0 chrVII 551439 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3589,364,0 chrVII 551689 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=3.402;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.314;QD=25.21;ReadPosRankSum=1.672;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2982,309,0 chrVII 552400 . C A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.15;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4005,421,0 chrVII 553252 . G C 5533.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=15.8166;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.28;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,281:287:99:5533,609,0 chrVII 553492 . T C 4990.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.88;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4990,514,0 chrVII 553711 . T C 5921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.6030;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.128;QD=24.27;ReadPosRankSum=1.704;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5921,628,0 chrVII 553796 . C T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.3087;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.75;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5297,514,0 chrVII 553821 . C A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.6577;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.21;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4406,439,0 chrVII 553824 . G A 4268.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3560;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.82;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4268,427,0 chrVII 553878 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.18;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4103,406,0 chrVII 553967 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.449;QD=22.55;ReadPosRankSum=2.382;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3270,339,0 chrVII 554033 . C A 2219 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.12;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2252,231,0 chrVII 554608 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.336;QD=25.04;ReadPosRankSum=1.714;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4832,493,0 chrVII 554830 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=24.88;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4403,445,0 chrVII 554853 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.66;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4070,412,0 chrVII 554980 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.00;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4706,469,0 chrVII 555047 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.83;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2137,210,0 chrVII 555048 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.29;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2119,210,0 chrVII 555111 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.35;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2638,262,0 chrVII 555234 . A C 965 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.93;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:998,105,0 chrVII 555526 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.47;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2223,219,0 chrVII 555542 . A G 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=11.091;HaplotypeScore=4.8928;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.693;QD=22.03;ReadPosRankSum=1.655;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2016,216,0 chrVII 556096 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2157,219,0 chrVII 557243 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.276;QD=25.26;ReadPosRankSum=2.418;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3991,421,0 chrVII 557597 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.74;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1102,111,0 chrVII 558497 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.12;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3048,330,0 chrVII 558800 . G T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.63;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3507,363,0 chrVII 558809 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.849;DP=166;Dels=0.00;FS=5.129;HaplotypeScore=5.0894;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.022;QD=21.67;ReadPosRankSum=2.580;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3597,363,0 chrVII 558946 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.86;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2892,292,0 chrVII 558969 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.02;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2435,252,0 chrVII 559340 . A G 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=-0.898;QD=23.31;ReadPosRankSum=1.700;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2550,264,0 chrVII 559498 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=26.83;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2609,256,0 chrVII 560083 . G A 5043.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.7497;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.84;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:5043,529,0 chrVII 560314 . A C 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=203;Dels=0.00;FS=2.974;HaplotypeScore=10.9483;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.894;QD=24.37;ReadPosRankSum=2.376;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:2,197:203:99:4947,511,0 chrVII 560350 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.81;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4060,400,0 chrVII 560364 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3789;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.79;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3879,394,0 chrVII 560495 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.71;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2891,289,0 chrVII 560557 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=151;Dels=0.00;FS=7.781;HaplotypeScore=18.9970;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-2.125;QD=22.68;ReadPosRankSum=3.790;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:5,145:151:99:3425,363,0 chrVII 561434 . A C 2337 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.61;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2370,246,0 chrVII 561585 . A C 1785 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=24.79;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1818,195,0 chrVII 561645 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=32.5709;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=20.37;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1092,108,0 chrVII 561745 . A C 1047 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=22.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1080,108,0 chrVII 561747 . G T 1087 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=23.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1120,108,0 chrVII 561756 . G A 1020 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=22.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1053,108,0 chrVII 568130 . G C 3302.01 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=24.10;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3302,351,0 chrVII 568138 . G A 3094 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.92;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3127,333,0 chrVII 568139 . G A 3233.06 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.60;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3268,333,0 chrVII 568150 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.27;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3281,342,0 chrVII 568237 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.761;QD=25.11;ReadPosRankSum=1.680;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3314,348,0 chrVII 568306 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.685;QD=22.13;ReadPosRankSum=2.375;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2932,309,0 chrVII 568323 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.83;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3047,315,0 chrVII 568421 . G T 2292 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.19;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2325,240,0 chrVII 568463 . T A 1774 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=25.71;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1807,180,0 chrVII 568505 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=25.58;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1440,147,0 chrVII 568510 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=24.59;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1410,144,0 chrVII 568593 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=21.16;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1260,129,0 chrVII 568617 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=23.68;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1359,138,0 chrVII 568646 . G C 1070 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=22.77;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:47:99:1103,117,0 chrVII 568662 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=24.54;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:96:941,96,0 chrVII 568669 . A T 747 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-0.839;QD=24.10;ReadPosRankSum=1.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:81:780,81,0 chrVII 568674 . G C 621 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=22.18;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:72:654,72,0 chrVII 568734 . T G 102.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-1.067;QD=11.36;ReadPosRankSum=1.589;SB=2.74 GT:AD:DP:GQ:PL 1/1:2,6:9:15:135,15,0 chrVII 574709 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.5439;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=0;MQRankSum=1.659;QD=0.50;ReadPosRankSum=-2.420;SB=-3.001e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:45:45,0,134 chrVII 574724 . T C 218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.8408;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-1.238;QD=6.23;ReadPosRankSum=1.634;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:27:251,27,0 chrVII 574745 . G A 656 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=14.26;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:69:689,69,0 chrVII 574931 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=27.10;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2851,280,0 chrVII 575122 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.69;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2422,252,0 chrVII 575154 . C A 2414 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.63;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2447,252,0 chrVII 575955 . C T 6285.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.21;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:6285,631,0 chrVII 579120 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=4.184;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.205;QD=25.79;ReadPosRankSum=1.709;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3920,412,0 chrVII 579227 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.47;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3303,328,0 chrVII 580178 . G T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.16;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4227,418,0 chrVII 580396 . A G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.515;DP=74;Dels=0.00;FS=6.182;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.820;QD=21.23;ReadPosRankSum=2.821;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1604,171,0 chrVII 581805 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.02;FS=0.000;HaplotypeScore=12.8974;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.70;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2969,295,0 chrVII 582800 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.56;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2001,201,0 chrVII 584635 . A T 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=164;Dels=0.00;FS=6.083;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.896;QD=17.74;ReadPosRankSum=2.749;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:2942,356,0 chrVII 584636 . T A 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.668;QD=17.91;ReadPosRankSum=1.603;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2916,353,0 chrVII 584683 . C G 3003 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.43;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3036,321,0 chrVII 584916 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.46;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3042,318,0 chrVII 585509 . C G 2481 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.15;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2514,258,0 chrVII 586087 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.72;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3140,333,0 chrVII 588582 . C G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.94;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3903,414,0 chrVII 589637 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.606;QD=21.58;ReadPosRankSum=1.704;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2709,279,0 chrVII 590527 . C G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.99;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3749,388,0 chrVII 590933 . C A 2317 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.17;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2350,234,0 chrVII 591077 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.49;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2057,219,0 chrVII 591253 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2492,249,0 chrVII 592123 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=5.218;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.273;QD=24.31;ReadPosRankSum=1.706;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3266,334,0 chrVII 592271 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.28;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4529,448,0 chrVII 592414 . G C 4093.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.96;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4093,424,0 chrVII 592944 . T A 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=3.990;HaplotypeScore=11.6115;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.333;QD=20.76;ReadPosRankSum=1.716;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4443,469,0 chrVII 592971 . T C 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=234;Dels=0.00;FS=8.526;HaplotypeScore=3.3476;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.635;QD=19.16;ReadPosRankSum=2.093;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4483,483,0 chrVII 592987 . T C 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=251;Dels=0.00;FS=8.713;HaplotypeScore=8.2438;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.604;QD=20.06;ReadPosRankSum=2.430;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:5035,511,0 chrVII 593212 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=22.60;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2316,243,0 chrVII 593216 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.408;QD=22.08;ReadPosRankSum=1.630;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2285,240,0 chrVII 593616 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0377;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.976;QD=25.91;ReadPosRankSum=1.659;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3679,387,0 chrVII 594675 . G C 2345 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.99;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2378,249,0 chrVII 595340 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.9472;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.91;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3734,402,0 chrVII 596110 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=126;Dels=0.00;FS=8.086;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=22.60;ReadPosRankSum=2.409;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,119:126:99:2881,300,0 chrVII 597418 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.10;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4919,534,0 chrVII 598680 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1970,198,0 chrVII 599194 . T C 3020 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.71;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3053,324,0 chrVII 599246 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0556;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.06;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3513,358,0 chrVII 599286 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.80;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2148,222,0 chrVII 599373 . T G 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.420;QD=27.19;ReadPosRankSum=1.706;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3644,376,0 chrVII 601220 . A G 2772 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2805,288,0 chrVII 601519 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.03;FS=0.000;HaplotypeScore=18.3036;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=15.57;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1574,159,0 chrVII 604120 . C A 2565 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2598,258,0 chrVII 607984 . A C 4952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.547;QD=24.04;ReadPosRankSum=1.682;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4952,523,0 chrVII 609644 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=146;Dels=0.00;FS=5.912;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=24.75;ReadPosRankSum=2.869;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3614,381,0 chrVII 609893 . T A 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.7093;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.067;QD=24.02;ReadPosRankSum=1.643;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5669,612,0 chrVII 611358 . T C 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=230;Dels=0.00;FS=5.450;HaplotypeScore=13.5629;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.258;QD=21.97;ReadPosRankSum=1.702;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5053,538,0 chrVII 611632 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=1.63;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:54,6,0 chrVII 615761 . C G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.8569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3769,391,0 chrVII 617199 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.95;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4609,457,0 chrVII 617977 . T G 2413 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2446,255,0 chrVII 619770 . G A 5246.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.98;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5246,520,0 chrVII 620376 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8077;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.86;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3629,373,0 chrVII 620815 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.10;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3664,382,0 chrVII 624998 . A C 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=5.066;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.483;QD=25.53;ReadPosRankSum=1.713;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4697,487,0 chrVII 625150 . T G 6121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.705;QD=24.19;ReadPosRankSum=1.705;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6121,661,0 chrVII 625418 . A G 6834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=319;Dels=0.00;FS=5.697;HaplotypeScore=19.0783;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.927;QD=21.42;ReadPosRankSum=2.978;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:3,316:319:99:6834,721,0 chrVII 626679 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3646,370,0 chrVII 628958 . T G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.161;HaplotypeScore=10.9791;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.473;QD=23.82;ReadPosRankSum=1.709;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3501,364,0 chrVII 629919 . C T 4370.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.41;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4370,454,0 chrVII 630680 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1969,195,0 chrVII 634321 . G T 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=121;Dels=0.00;FS=6.131;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.585;QD=21.40;ReadPosRankSum=1.229;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:5,116:121:99:2623,276,0 chrVII 634339 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7512;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.39;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3027,304,0 chrVII 634381 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.85;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3086,324,0 chrVII 634480 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.76;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3191,316,0 chrVII 634557 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=27.49;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2974,295,0 chrVII 634640 . G A 2545 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2578,270,0 chrVII 634684 . C G 2528 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.54;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2561,264,0 chrVII 638390 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=6.812;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.094;QD=25.03;ReadPosRankSum=2.398;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3629,360,0 chrVII 638787 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.460;QD=24.79;ReadPosRankSum=1.714;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4735,502,0 chrVII 640575 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.87;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1958,198,0 chrVII 641284 . A G 6494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=302;Dels=0.00;FS=3.011;HaplotypeScore=16.8394;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.160;QD=21.50;ReadPosRankSum=2.425;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:2,297:302:99:6494,697,0 chrVII 642057 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=180;Dels=0.00;FS=2.395;HaplotypeScore=12.7576;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.757;QD=24.55;ReadPosRankSum=3.401;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:4419,454,0 chrVII 642162 . G A 6159.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.5017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6159,622,0 chrVII 642267 . G A 6345.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.5989;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.38;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6345,634,0 chrVII 643082 . G T 2554 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2587,258,0 chrVII 645493 . T G 4600.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4600,492,0 chrVII 645958 . G T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5010,517,0 chrVII 647255 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.546;QD=25.39;ReadPosRankSum=1.685;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3757,391,0 chrVII 648054 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.7417;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.30;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3915,388,0 chrVII 648210 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.493;QD=23.60;ReadPosRankSum=1.707;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3265,322,0 chrVII 649033 . A C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3383,354,0 chrVII 651108 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.12;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,99:103:99:2620,276,0 chrVII 651171 . G C 3128 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=26.07;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3161,330,0 chrVII 651370 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4243,421,0 chrVII 651434 . A G 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=6.199;HaplotypeScore=11.1751;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.717;QD=24.34;ReadPosRankSum=2.393;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4236,445,0 chrVII 653840 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.44;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2037,210,0 chrVII 656248 . T G 3864.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.76;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3864,400,0 chrVII 657389 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.94;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3016,304,0 chrVII 659935 . T A 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1284;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.090;QD=25.24;ReadPosRankSum=1.690;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3138,333,0 chrVII 660023 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=26.96;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3613,361,0 chrVII 660120 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.60;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3039,301,0 chrVII 660197 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.95;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3420,369,0 chrVII 660217 . A C 3016 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.85;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3049,321,0 chrVII 660351 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4204;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3128,313,0 chrVII 660392 . T A 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=2.993;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.761;QD=24.12;ReadPosRankSum=2.394;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:2180,228,0 chrVII 660725 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=122.1583;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.08;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3241,331,0 chrVII 663901 . T C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.124;QD=22.59;ReadPosRankSum=1.701;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2563,270,0 chrVII 664995 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:4001,403,0 chrVII 665923 . T C 3137 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3170,325,0 chrVII 666261 . T A 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.526;QD=24.95;ReadPosRankSum=1.650;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2129,210,0 chrVII 666285 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.50;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1869,183,0 chrVII 666448 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.65;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2847,297,0 chrVII 666496 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=25.54;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2459,252,0 chrVII 666547 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.11;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2165,240,0 chrVII 666548 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.719;QD=20.07;ReadPosRankSum=1.634;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2160,240,0 chrVII 666667 . A C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=4.574;HaplotypeScore=8.4454;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.088;QD=23.88;ReadPosRankSum=1.705;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3137,330,0 chrVII 666815 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.43;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3327,351,0 chrVII 666829 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=139;Dels=0.00;FS=6.082;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.862;QD=23.20;ReadPosRankSum=2.950;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3258,339,0 chrVII 667659 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.66;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3070,318,0 chrVII 667672 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.94;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2877,283,0 chrVII 667714 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.18;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2354,231,0 chrVII 667720 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.36;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2354,240,0 chrVII 667820 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.56;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1800,186,0 chrVII 667843 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.98;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1040,108,0 chrVII 668528 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4305,448,0 chrVII 670886 . A C 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=20.1473;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.020;QD=24.36;ReadPosRankSum=1.149;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4556,486,0 chrVII 672695 . G A 5282.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8687;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.68;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5282,517,0 chrVII 675203 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=204;Dels=0.00;FS=12.171;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.750;QD=24.51;ReadPosRankSum=3.417;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:5001,535,0 chrVII 676166 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.74;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3706,387,0 chrVII 677281 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=151;Dels=0.00;FS=6.108;HaplotypeScore=13.3713;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-2.205;QD=22.08;ReadPosRankSum=2.417;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3334,363,0 chrVII 678135 . C A 1294 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.31;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1327,135,0 chrVII 678429 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=26.89;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4034,397,0 chrVII 680048 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2781,282,0 chrVII 681851 . A T 4991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.936;QD=23.88;ReadPosRankSum=1.699;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4991,499,0 chrVII 682394 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.57;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2072,219,0 chrVII 683391 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3247,325,0 chrVII 689454 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=178;Dels=0.00;FS=7.800;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.598;QD=25.01;ReadPosRankSum=2.394;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4451,469,0 chrVII 690131 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3161,313,0 chrVII 696765 . G A 5874.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.2820;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=26.22;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5874,580,0 chrVII 697548 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2355,231,0 chrVII 699091 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3705,382,0 chrVII 701053 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.23;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2531,258,0 chrVII 705215 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1359,138,0 chrVII 706552 . C G 2025 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2058,216,0 chrVII 715323 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.36;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1995,210,0 chrVII 715330 . T G 1990 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.14;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2023,216,0 chrVII 715401 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.16;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2197,219,0 chrVII 715450 . T A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6636;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.485;QD=25.83;ReadPosRankSum=1.628;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2642,279,0 chrVII 718668 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.191;DP=163;Dels=0.00;FS=3.120;HaplotypeScore=12.9996;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.585;QD=24.04;ReadPosRankSum=1.342;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3918,403,0 chrVII 719360 . A T 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=146;Dels=0.00;FS=8.631;HaplotypeScore=9.5036;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.602;QD=24.72;ReadPosRankSum=1.704;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3609,364,0 chrVII 721916 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=135;Dels=0.00;FS=6.389;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.009;QD=24.31;ReadPosRankSum=2.413;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3282,340,0 chrVII 722062 . A G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.905;QD=25.02;ReadPosRankSum=2.368;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:3061,321,0 chrVII 722662 . T A 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.597;QD=25.91;ReadPosRankSum=1.645;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3116,307,0 chrVII 724567 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3571,378,0 chrVII 724918 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2184,216,0 chrVII 729374 . T C 5454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=230;Dels=0.00;FS=9.017;HaplotypeScore=17.5092;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.141;QD=23.71;ReadPosRankSum=3.384;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:4,224:230:99:5454,574,0 chrVII 730604 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3092,321,0 chrVII 733088 . G T 1465 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=9.8878;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.89;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1498,153,0 chrVII 734668 . A T 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.624;DP=179;Dels=0.00;FS=2.581;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.702;QD=23.25;ReadPosRankSum=2.905;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4162,412,0 chrVII 737189 . C A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.44;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4096,409,0 chrVII 739354 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.042;QD=24.47;ReadPosRankSum=1.715;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5066,535,0 chrVII 741068 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.54;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5006,502,0 chrVII 741826 . C A 1336 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1369,147,0 chrVII 744731 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3624,361,0 chrVII 745588 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2646,273,0 chrVII 748014 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.062;HaplotypeScore=10.2161;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.488;QD=24.91;ReadPosRankSum=1.691;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4284,442,0 chrVII 748214 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2966,309,0 chrVII 748310 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.96;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3345,351,0 chrVII 748756 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2886,283,0 chrVII 748979 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.589;QD=23.40;ReadPosRankSum=1.703;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2865,303,0 chrVII 749782 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=181;Dels=0.00;FS=2.975;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.473;QD=25.26;ReadPosRankSum=2.422;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4572,469,0 chrVII 751217 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2840,280,0 chrVII 752126 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2069,207,0 chrVII 753356 . A G 7074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=28.1464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=21.77;ReadPosRankSum=2.434;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,322:325:99:7074,742,0 chrVII 754648 . C G 1318 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1351,141,0 chrVII 754860 . C G 2845 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2878,309,0 chrVII 761996 . A G 6293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.0250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.312;QD=25.79;ReadPosRankSum=1.718;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:6293,643,0 chrVII 764529 . C T 3022 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;DP=274;Dels=0.00;FS=22.171;HaplotypeScore=18.6548;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=86;MQRankSum=0.775;QD=11.03;ReadPosRankSum=-0.061;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:42,230:274:99:3055,251,0 chrVII 764689 . A G 648.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.956;DP=323;Dels=0.00;FS=128.055;HaplotypeScore=17.4791;MLEAC=1;MLEAF=0.500;MQ=18.35;MQ0=103;MQRankSum=0.001;QD=2.01;ReadPosRankSum=-0.964;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,118:323:99:678,0,1680 chrVII 764935 . C T 558.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.907;DP=274;Dels=0.00;FS=138.786;HaplotypeScore=8.0517;MLEAC=1;MLEAF=0.500;MQ=43.27;MQ0=45;MQRankSum=-2.778;QD=2.04;ReadPosRankSum=0.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,86:274:99:588,0,3923 chrVII 766068 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=176;Dels=0.00;FS=12.631;HaplotypeScore=14.9970;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.523;QD=25.50;ReadPosRankSum=2.891;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4488,460,0 chrVII 767344 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0773;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.49;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3758,396,0 chrVII 769748 . A C 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=5.490;HaplotypeScore=6.5101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.419;QD=26.52;ReadPosRankSum=1.713;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4720,487,0 chrVII 771837 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.45;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3919,426,0 chrVII 772551 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3803,376,0 chrVII 773594 . C G 2612 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.19;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2645,288,0 chrVII 779852 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3271,331,0 chrVII 785199 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.98;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2831,294,0 chrVII 785945 . G T 6047.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6047,598,0 chrVII 786402 . C T 7998.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=18.7546;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.72;SB=-5.117e+03 GT:AD:DP:GQ:PL 1/1:0,351:352:99:7998,788,0 chrVII 786669 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.742;QD=22.63;ReadPosRankSum=1.661;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4480,483,0 chrVII 786698 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=9.839;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.546;QD=23.70;ReadPosRankSum=2.962;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4361,448,0 chrVII 786726 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.19;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3730,393,0 chrVII 786733 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.36;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3780,373,0 chrVII 786858 . A C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.224;QD=24.34;ReadPosRankSum=1.640;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3651,384,0 chrVII 786976 . C A 2766 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.05;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2799,291,0 chrVII 787089 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1414,138,0 chrVII 787546 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3879,394,0 chrVII 787750 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=25.87;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3337,334,0 chrVII 788249 . A T 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.331;QD=25.34;ReadPosRankSum=1.648;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4156,412,0 chrVII 788427 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.837;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.831;QD=24.01;ReadPosRankSum=1.478;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3626,390,0 chrVII 788486 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=9.543;HaplotypeScore=146.2538;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=2.156;QD=21.12;ReadPosRankSum=2.422;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3717,373,0 chrVII 788497 . T C 127.24 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=176;Dels=0.00;FS=4.393;HaplotypeScore=159.8190;MLEAC=1;MLEAF=0.500;MQ=49.56;MQ0=0;MQRankSum=0.791;QD=0.72;ReadPosRankSum=1.423;SB=-6.427e+01 GT:AD:DP:GQ:PL 1/1:1,10:176:18:160,18,0 chrVII 788504 . T G 415.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.974;DP=193;Dels=0.00;FS=2.272;HaplotypeScore=165.0733;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.078;QD=2.15;ReadPosRankSum=2.912;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:25:448,25,0 chrVII 788558 . T C 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.755;QD=21.88;ReadPosRankSum=1.698;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4463,469,0 chrVII 788938 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.491;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.308;QD=22.86;ReadPosRankSum=1.694;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2113,213,0 chrVII 788947 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.23;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2056,210,0 chrVII 789015 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.31;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3019,301,0 chrVII 789160 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.594;QD=26.68;ReadPosRankSum=1.709;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:4002,409,0 chrVII 789213 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.243;QD=25.74;ReadPosRankSum=0.521;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4195,415,0 chrVII 789273 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=158;Dels=0.00;FS=5.704;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.542;QD=24.27;ReadPosRankSum=2.943;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3835,405,0 chrVII 789318 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.60;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3272,339,0 chrVII 789345 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.73;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2966,312,0 chrVII 789498 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.79;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2958,295,0 chrVII 789789 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.52;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3593,378,0 chrVII 789939 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.71;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2465,258,0 chrVII 789975 . A G 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.124;QD=22.38;ReadPosRankSum=2.405;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2472,258,0 chrVII 790041 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2823,297,0 chrVII 790122 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.80;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3088,304,0 chrVII 790684 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=157;Dels=0.00;FS=9.286;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.400;QD=23.69;ReadPosRankSum=2.929;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3719,391,0 chrVII 790861 . C T 5086.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=27.05;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5086,505,0 chrVII 790909 . T C 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=213;Dels=0.00;FS=3.009;HaplotypeScore=8.1695;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.182;QD=22.42;ReadPosRankSum=2.254;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4775,499,0 chrVII 790915 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=23.31;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4639,484,0 chrVII 791092 . A T 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=2.804;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.464;QD=23.59;ReadPosRankSum=2.421;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4057,421,0 chrVII 791218 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.041;QD=25.66;ReadPosRankSum=1.712;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4363,448,0 chrVII 791316 . T A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.97;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3745,367,0 chrVII 791524 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.39;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3366,360,0 chrVII 791734 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=160;Dels=0.00;FS=8.827;HaplotypeScore=18.4764;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.819;QD=23.55;ReadPosRankSum=3.360;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:3768,385,0 chrVII 791799 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4798,478,0 chrVII 791887 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3930,394,0 chrVII 791920 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.76;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3367,348,0 chrVII 792001 . T G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.40;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3563,375,0 chrVII 792094 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8166;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.86;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2842,280,0 chrVII 792731 . G A 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=103;Dels=0.00;FS=3.407;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.698;QD=25.94;ReadPosRankSum=1.665;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2705,279,0 chrVII 792997 . A C 3174 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.86;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3207,336,0 chrVII 793207 . C A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.58;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3748,396,0 chrVII 793218 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7456;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.80;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3740,367,0 chrVII 793300 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.53;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3976,388,0 chrVII 793301 . A T 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=3.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.269;QD=23.25;ReadPosRankSum=2.391;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3930,388,0 chrVII 793585 . G C 4820.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.47;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4820,502,0 chrVII 793612 . A C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.477;QD=23.66;ReadPosRankSum=1.713;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4400,463,0 chrVII 793703 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=175;Dels=0.00;FS=5.560;HaplotypeScore=12.5779;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-1.491;QD=24.78;ReadPosRankSum=2.925;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4337,454,0 chrVII 793785 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=4.635;HaplotypeScore=13.2697;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.673;QD=21.57;ReadPosRankSum=1.688;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3429,363,0 chrVII 793906 . C T 518 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=4.98;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:60:551,60,0 chrVII 793952 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=19.98;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2411,246,0 chrVII 794027 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=23.60;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2653,267,0 chrVII 794041 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=23.00;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2724,285,0 chrVII 794286 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=25.24;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3138,336,0 chrVII 794396 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=27.36;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1702,165,0 chrVII 794497 . A G 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=43.3053;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.770;QD=18.09;ReadPosRankSum=2.357;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,51:53:99:992,105,0 chrVII 794535 . C T 557 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.0366;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=15.91;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:63:590,63,0 chrVII 794605 . A G 609 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.00;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:642,69,0 chrVII 794614 . C A 653 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.41;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:686,69,0 chrVII 794620 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.53;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:658,66,0 chrVII 794838 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=26.74;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3770,388,0 chrVII 794890 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=25.78;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4873,487,0 chrVII 794912 . C T 5542.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.0224;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.54;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5542,559,0 chrVII 794971 . T C 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.889;QD=23.48;ReadPosRankSum=1.716;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5235,559,0 chrVII 795142 . C T 4945.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.48;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4945,490,0 chrVII 795163 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.576;HaplotypeScore=4.2725;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.135;QD=22.27;ReadPosRankSum=1.674;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4030,432,0 chrVII 795193 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.34;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4014,409,0 chrVII 795501 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.61;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3969,412,0 chrVII 795589 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=7.722;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.964;QD=23.68;ReadPosRankSum=2.392;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4121,433,0 chrVII 795743 . T A 5626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.986;QD=26.92;ReadPosRankSum=1.666;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5626,562,0 chrVII 795856 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.63;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3665,364,0 chrVII 795876 . T G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.551;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.237;QD=24.19;ReadPosRankSum=1.642;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3749,391,0 chrVII 795956 . T C 4435.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.84;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4435,454,0 chrVII 796208 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.82;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3526,361,0 chrVII 796217 . T G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.284;HaplotypeScore=7.5240;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.310;QD=22.55;ReadPosRankSum=1.669;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3698,376,0 chrVII 796263 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=168;Dels=0.00;FS=5.894;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.331;QD=22.42;ReadPosRankSum=2.958;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3767,405,0 chrVII 796304 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.47;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4257,448,0 chrVII 796413 . G T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=23.23;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3600,355,0 chrVII 796416 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=22.47;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3506,349,0 chrVII 796516 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.018;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.165;QD=25.15;ReadPosRankSum=2.349;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4325,459,0 chrVII 796676 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.51;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3521,370,0 chrVII 797305 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=2.833;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.224;QD=22.32;ReadPosRankSum=2.333;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2845,300,0 chrVII 797326 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.769;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.5332;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=1.655;QD=17.62;ReadPosRankSum=0.804;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2324,249,0 chrVII 797329 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=15.0829;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.87;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2486,258,0 chrVII 797374 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.90;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2774,288,0 chrVII 797667 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.89;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3368,334,0 chrVII 797697 . G T 3133 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3166,313,0 chrVII 797776 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=104;Dels=0.00;FS=8.367;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.651;QD=25.70;ReadPosRankSum=3.372;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:4,100:104:99:2706,276,0 chrVII 797870 . G C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.08;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4016,421,0 chrVII 797989 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=26.63;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4074,406,0 chrVII 798046 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=3.196;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.508;QD=25.54;ReadPosRankSum=1.691;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4290,442,0 chrVII 798183 . C A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.53;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4097,409,0 chrVII 798196 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.983;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.902;QD=20.91;ReadPosRankSum=2.374;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3387,357,0 chrVII 798399 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=24.92;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3539,378,0 chrVII 799244 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.334;HaplotypeScore=12.2420;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.871;QD=23.26;ReadPosRankSum=1.713;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4234,445,0 chrVII 799451 . C T 6634.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.3344;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.43;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6634,664,0 chrVII 799595 . A G 6253.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.74;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6253,667,0 chrVII 799613 . G A 6386.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.83;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6386,637,0 chrVII 799904 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.61;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3011,304,0 chrVII 800053 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3177,316,0 chrVII 800250 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3388,357,0 chrVII 801370 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.8487;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.65;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4463,468,0 chrVII 801604 . C T 5259.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.2497;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.12;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5259,526,0 chrVII 801751 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.34;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3329,360,0 chrVII 802060 . G T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.38;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3451,363,0 chrVII 802496 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=24.14;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2833,280,0 chrVII 802512 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.97;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2508,249,0 chrVII 802532 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=101;Dels=0.00;FS=6.423;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.579;QD=19.34;ReadPosRankSum=2.327;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1986,210,0 chrVII 802550 . A G 1893 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.93;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1926,201,0 chrVII 802619 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.87;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2433,261,0 chrVII 802712 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.36;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2649,264,0 chrVII 802784 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.56;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2027,219,0 chrVII 802790 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.14;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2247,222,0 chrVII 802832 . G T 1811 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.58;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1844,195,0 chrVII 803009 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.214;QD=25.15;ReadPosRankSum=1.650;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3252,336,0 chrVII 803036 . T A 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=101;Dels=0.00;FS=2.867;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.329;QD=25.03;ReadPosRankSum=2.377;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2561,258,0 chrVII 803156 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.40;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3907,397,0 chrVII 803294 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3971,415,0 chrVII 803618 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.22;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2842,306,0 chrVII 803660 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.88;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2851,286,0 chrVII 803802 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.22;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2625,270,0 chrVII 803825 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.969;QD=24.63;ReadPosRankSum=1.703;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2964,306,0 chrVII 803918 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.15;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2569,255,0 chrVII 803987 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.15;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3250,319,0 chrVII 804353 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3215,330,0 chrVII 804429 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3331,328,0 chrVII 804767 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=173;Dels=0.00;FS=3.007;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.764;QD=23.73;ReadPosRankSum=2.421;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4106,424,0 chrVII 804812 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=174;Dels=0.00;FS=6.053;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.041;QD=23.98;ReadPosRankSum=2.937;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4173,441,0 chrVII 804950 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.78;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2625,262,0 chrVII 805132 . A C 2173 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.88;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2206,234,0 chrVII 805202 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.96;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2343,237,0 chrVII 805410 . G T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.58;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4522,460,0 chrVII 805540 . A G 5410.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9260;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.62;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5410,580,0 chrVII 805798 . G C 5823.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.11;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5823,592,0 chrVII 806066 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.0501;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.95;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4017,426,0 chrVII 806101 . G T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3871,385,0 chrVII 806778 . A G 5863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.471;DP=260;Dels=0.00;FS=18.186;HaplotypeScore=21.7905;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.801;QD=22.55;ReadPosRankSum=4.466;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:7,249:260:99:5863,636,0 chrVII 806826 . A G 5104.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.42;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5104,552,0 chrVII 806961 . C T 4923.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.69;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4923,496,0 chrVII 807574 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=18.9967;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.072;QD=24.16;ReadPosRankSum=1.714;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4687,478,0 chrVII 807662 . T A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.70;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4076,421,0 chrVII 807712 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.47;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3279,336,0 chrVII 807765 . G T 2736 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.06;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2769,277,0 chrVII 807906 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=13.7679;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=14.96;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1439,144,0 chrVII 807938 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.38;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2301,228,0 chrVII 807996 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.929;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=0.278;QD=20.45;ReadPosRankSum=1.670;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2323,255,0 chrVII 808049 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=15.19;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1856,201,0 chrVII 808061 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=14.50;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2034,213,0 chrVII 808065 . T G 1996 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=13.96;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2029,219,0 chrVII 808074 . A G 1961 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=12.99;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:1994,213,0 chrVII 808093 . C G 2607 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=16.93;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2640,276,0 chrVII 808199 . G T 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=-0.486;QD=18.93;ReadPosRankSum=2.160;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2305,276,0 chrVII 808200 . A G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=-0.684;QD=18.99;ReadPosRankSum=2.855;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2274,273,0 chrVII 808247 . T C 2379 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=22.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2412,267,0 chrVII 808336 . T C 1369 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1402,159,0 chrVII 808348 . G A 1311 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=25.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1344,138,0 chrVII 808622 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.702;QD=25.11;ReadPosRankSum=1.702;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2921,303,0 chrVII 808820 . G A 6164.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=27.3436;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.33;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:1,268:276:99:6164,634,0 chrVII 809363 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4423,460,0 chrVII 809504 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.2634;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.72;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4198,445,0 chrVII 810028 . A C 5233.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.7379;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.26;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5233,550,0 chrVII 810308 . A G 6156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=269;Dels=0.00;FS=9.178;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=22.88;ReadPosRankSum=2.974;SB=-3.704e+03 GT:AD:DP:GQ:PL 1/1:3,265:269:99:6156,634,0 chrVII 810523 . T C 5080.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=21.8042;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.08;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5080,538,0 chrVII 810921 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=2.883;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.689;QD=25.18;ReadPosRankSum=2.415;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3575,372,0 chrVII 810987 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.57;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4300,442,0 chrVII 811099 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.99;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4174,442,0 chrVII 811192 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9807;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=26.40;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4488,442,0 chrVII 811300 . A G 2574 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.61;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2607,273,0 chrVII 811341 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=5.141;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.919;QD=22.69;ReadPosRankSum=1.591;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2257,234,0 chrVII 823409 . T G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=1;MQRankSum=0.976;QD=18.66;ReadPosRankSum=1.692;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1675,171,0 chrVII 823433 . T G 762 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=12.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:81:795,81,0 chrVII 823434 . T A 810 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=1.622;QD=12.86;ReadPosRankSum=1.622;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:84:843,84,0 chrVII 823436 . C A 722 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=12.03;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:84:755,84,0 chrVII 823442 . A T 627 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=9.09;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:66:660,66,0 chrVII 823443 . C G 550 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=8.09;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:63:583,63,0 chrVII 826769 . C T 4691.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.95;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4691,487,0 chrVII 827191 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.50;ReadPosRankSum=1.688;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1944,198,0 chrVII 828859 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.491;QD=24.24;ReadPosRankSum=2.398;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2336,240,0 chrVII 829946 . G C 2762 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.83;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2795,303,0 chrVII 830778 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2363,243,0 chrVII 831634 . G T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3669,364,0 chrVII 833104 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3916,385,0 chrVII 833622 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.2658;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.441;QD=24.18;ReadPosRankSum=1.635;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3458,349,0 chrVII 833760 . C G 2626 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.04;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2659,285,0 chrVII 833792 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=22.60;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2225,219,0 chrVII 833796 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.61;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2086,204,0 chrVII 833804 . C A 2281 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.36;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2314,234,0 chrVII 833865 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.64;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2497,270,0 chrVII 833973 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.911;QD=22.82;ReadPosRankSum=1.696;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2269,237,0 chrVII 834003 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.84;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1554,159,0 chrVII 834032 . A T 701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;DP=72;Dels=0.00;FS=2.851;HaplotypeScore=13.8031;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=1.639;QD=9.74;ReadPosRankSum=1.836;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:12,60:72:75:734,75,0 chrVII 834033 . A T 713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.954;DP=72;Dels=0.00;FS=5.347;HaplotypeScore=13.8031;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=3.085;QD=9.90;ReadPosRankSum=2.815;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:75:746,75,0 chrVII 834078 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.12;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1601,168,0 chrVII 834267 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.33;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2845,300,0 chrVII 834413 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=27.36;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3475,349,0 chrVII 834852 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2796,285,0 chrVII 834928 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.651;QD=24.45;ReadPosRankSum=1.712;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4230,433,0 chrVII 835147 . T C 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.373;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.435;QD=25.21;ReadPosRankSum=1.695;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4714,487,0 chrVII 835244 . C T 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.874;DP=224;Dels=0.00;FS=3.170;HaplotypeScore=12.6608;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.670;QD=24.09;ReadPosRankSum=-0.125;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5397,524,0 chrVII 835436 . T G 5320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=220;Dels=0.00;FS=6.324;HaplotypeScore=16.5861;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.320;QD=24.18;ReadPosRankSum=2.427;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:5320,547,0 chrVII 837778 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3481,343,0 chrVII 837909 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.65;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4155,438,0 chrVII 838490 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=135;Dels=0.00;FS=7.943;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.138;QD=23.37;ReadPosRankSum=2.413;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3188,330,0 chrVII 840395 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.75;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3777,391,0 chrVII 840410 . T G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.162;QD=22.83;ReadPosRankSum=1.687;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3516,360,0 chrVII 841151 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3201,319,0 chrVII 842206 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=3.023;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.210;QD=24.28;ReadPosRankSum=2.411;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,125:130:99:3190,333,0 chrVII 843110 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.91;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4354,430,0 chrVII 843568 . G C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.35;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3878,400,0 chrVII 845601 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=25.28;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2182,216,0 chrVII 845614 . C A 1556 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.58;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1589,159,0 chrVII 846529 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.32;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2818,277,0 chrVII 847630 . G C 5513.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:5513,592,0 chrVII 848849 . C T 6506.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.12;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6506,655,0 chrVII 849134 . C G 5432.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.31;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5432,580,0 chrVII 850923 . T C 1502 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.58;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1535,159,0 chrVII 851062 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.02;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,157:161:99:4190,444,0 chrVII 851197 . T G 4615.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.57;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4615,498,0 chrVII 851656 . C G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2772;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.92;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4042,429,0 chrVII 851746 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=26.17;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3951,397,0 chrVII 851801 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.923;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.687;QD=24.22;ReadPosRankSum=1.709;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3705,396,0 chrVII 851827 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6467;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.10;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3447,349,0 chrVII 851899 . T C 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=10.342;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.009;QD=20.55;ReadPosRankSum=2.324;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2849,303,0 chrVII 851923 . C A 3084 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.72;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3117,310,0 chrVII 851981 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.53;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3256,328,0 chrVII 852002 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.16;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3150,333,0 chrVII 852034 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=119;Dels=0.00;FS=5.892;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.838;QD=22.21;ReadPosRankSum=2.889;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2676,282,0 chrVII 852133 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.57;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3507,355,0 chrVII 852310 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4438,460,0 chrVII 853005 . C A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.8004;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.62;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3280,328,0 chrVII 853006 . T A 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=6.298;HaplotypeScore=4.3778;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.009;QD=22.82;ReadPosRankSum=2.279;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3309,331,0 chrVII 853046 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.12;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3116,310,0 chrVII 853120 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.53;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3794,391,0 chrVII 853279 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0580;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.506;QD=22.23;ReadPosRankSum=1.707;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3123,339,0 chrVII 853535 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=3.865;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.454;QD=22.10;ReadPosRankSum=1.701;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2530,273,0 chrVII 853758 . C T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.67;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4364,433,0 chrVII 853870 . A G 4262.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.86;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4262,451,0 chrVII 854194 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.26;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3140,313,0 chrVII 854240 . C A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8313;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.30;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3244,342,0 chrVII 854257 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.34;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3231,319,0 chrVII 854461 . A T 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=4.018;HaplotypeScore=11.7613;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.076;QD=25.27;ReadPosRankSum=1.609;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4270,430,0 chrVII 854692 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4306,424,0 chrVII 854779 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7747;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.05;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3572,364,0 chrVII 854830 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.90;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3802,397,0 chrVII 855067 . C T 2001 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2034,207,0 chrVII 855163 . T C 390 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=22.94;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:45:423,45,0 chrVII 855164 . T C 389 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=24.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:45:422,45,0 chrVII 855417 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.57;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2718,294,0 chrVII 855821 . C T 6270.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:6270,622,0 chrVII 857160 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2851;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.16;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4132,409,0 chrVII 857217 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=2.579;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.761;QD=23.90;ReadPosRankSum=2.903;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3729,382,0 chrVII 857293 . C A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.59;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3843,382,0 chrVII 857340 . G C 3179 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.08;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3212,333,0 chrVII 857441 . G A 2613 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=9;QD=25.12;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:9,95:104:99:2646,264,0 chrVII 857585 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=108.0028;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.77;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2588,264,0 chrVII 857688 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.34;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2238,243,0 chrVII 857780 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=24.49;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3404,348,0 chrVII 857788 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=25.22;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3556,355,0 chrVII 857814 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=21.80;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3237,324,0 chrVII 857836 . C T 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=150;Dels=0.00;FS=5.920;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.389;QD=19.36;ReadPosRankSum=2.953;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2937,315,0 chrVII 857876 . A C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=136;Dels=0.00;FS=9.427;HaplotypeScore=11.8790;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.664;QD=20.49;ReadPosRankSum=2.754;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2819,297,0 chrVII 857963 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=155;Dels=0.00;FS=6.061;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;MQRankSum=1.786;QD=15.28;ReadPosRankSum=2.916;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2401,285,0 chrVII 857965 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=15.27;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2370,282,0 chrVII 857985 . G C 2781 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=17.83;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2814,303,0 chrVII 857993 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=17.99;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2768,291,0 chrVII 858001 . G C 2471 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=17.78;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2504,261,0 chrVII 858110 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=26.15;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3897,385,0 chrVII 858225 . G T 2492 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=25.69;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2525,252,0 chrVII 858261 . C A 2806 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.58;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2839,285,0 chrVII 858310 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.9047;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.44;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4096,415,0 chrVII 858478 . G C 4524.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.70;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4524,463,0 chrVII 858511 . C T 4723.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=26.99;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4723,469,0 chrVII 858611 . C A 2730 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=9.2213;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.20;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2763,274,0 chrVII 858672 . C T 38.97 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=0.34;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:9:71,9,0 chrVII 858803 . A T 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=64;Dels=0.02;FS=12.372;HaplotypeScore=49.2340;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.629;QD=21.58;ReadPosRankSum=2.889;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1414,144,0 chrVII 858948 . G C 2025 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.55;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2058,213,0 chrVII 859016 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=26.44;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3649,376,0 chrVII 859075 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.10;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2796,280,0 chrVII 859306 . G T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.99;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4559,457,0 chrVII 859310 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.70;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4409,451,0 chrVII 859352 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=3.788;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.054;QD=21.11;ReadPosRankSum=1.695;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3989,429,0 chrVII 859418 . C A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=9.1316;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.66;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4187,412,0 chrVII 859422 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.4429;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.27;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4211,412,0 chrVII 859580 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.38;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4340,454,0 chrVII 859584 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=24.93;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4462,448,0 chrVII 859719 . T C 2227 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.05;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2260,231,0 chrVII 859804 . A G 2227 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.62;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2260,237,0 chrVII 859808 . T G 2180 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.76;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2213,228,0 chrVII 859825 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=98;Dels=0.00;FS=8.836;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=1.261;QD=19.74;ReadPosRankSum=3.366;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1968,204,0 chrVII 860213 . A G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=150;Dels=0.00;FS=3.011;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.333;QD=18.69;ReadPosRankSum=2.400;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:2836,300,0 chrVII 860477 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2822;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.08;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3888,406,0 chrVII 860513 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.094;QD=25.03;ReadPosRankSum=1.709;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3854,403,0 chrVII 860534 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.76;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3343,354,0 chrVII 860594 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.03;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2965,303,0 chrVII 860672 . C A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.02;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3939,397,0 chrVII 860690 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.142;DP=164;Dels=0.00;FS=2.972;HaplotypeScore=3.3634;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.772;QD=22.78;ReadPosRankSum=1.745;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3736,365,0 chrVII 860732 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.03;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2809,285,0 chrVII 860821 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.508;QD=23.04;ReadPosRankSum=1.711;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3847,414,0 chrVII 860831 . C A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=24.16;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4132,409,0 chrVII 860945 . G A 4937.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.71;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4937,523,0 chrVII 860975 . T C 5085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=2.935;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.141;QD=25.30;ReadPosRankSum=2.400;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:5085,532,0 chrVII 861152 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.1256;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.79;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4877,487,0 chrVII 861190 . G C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=24.43;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4104,427,0 chrVII 861356 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=24.93;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3124,313,0 chrVII 861401 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=20.89;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2456,258,0 chrVII 861407 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=122;Dels=0.00;FS=2.577;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-1.785;QD=19.53;ReadPosRankSum=2.926;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2416,252,0 chrVII 861419 . T G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=107;Dels=0.00;FS=11.165;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-2.180;QD=17.30;ReadPosRankSum=2.934;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1884,195,0 chrVII 861437 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=16.74;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1874,195,0 chrVII 861475 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=116;Dels=0.00;FS=8.533;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.291;QD=20.77;ReadPosRankSum=2.407;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2442,258,0 chrVII 861578 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.742;QD=25.59;ReadPosRankSum=1.703;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3104,327,0 chrVII 861656 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.30;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3499,372,0 chrVII 861773 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1612;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.34;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4241,424,0 chrVII 861857 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.172;HaplotypeScore=8.8041;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.084;QD=23.77;ReadPosRankSum=1.648;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3922,409,0 chrVII 861908 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3041;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.41;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4540,475,0 chrVII 861944 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4330;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.56;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4240,433,0 chrVII 861978 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.62;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3846,391,0 chrVII 862016 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.185;QD=23.10;ReadPosRankSum=1.709;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3488,372,0 chrVII 862103 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.97;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4095,424,0 chrVII 862232 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=7.266;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.311;QD=23.31;ReadPosRankSum=2.402;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3613,376,0 chrVII 862303 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=25.17;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3398,334,0 chrVII 862364 . T C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.530;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.586;QD=23.64;ReadPosRankSum=1.680;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3224,345,0 chrVII 862491 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.805;QD=25.92;ReadPosRankSum=1.708;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3680,379,0 chrVII 862544 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.56;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3384,349,0 chrVII 862549 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.6786;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.85;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3266,337,0 chrVII 862646 . A T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7996;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.94;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4065,406,0 chrVII 862925 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.95;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3718,370,0 chrVII 862964 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.22;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3560,358,0 chrVII 863021 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.69;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3193,319,0 chrVII 863057 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.50;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2948,300,0 chrVII 863144 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.858;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.283;QD=24.32;ReadPosRankSum=1.708;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3453,372,0 chrVII 863180 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.71;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3163,327,0 chrVII 863198 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.49;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3374,340,0 chrVII 863249 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.47;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3416,352,0 chrVII 863267 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.89;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3433,354,0 chrVII 863549 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.66;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2888,306,0 chrVII 863753 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=24.75;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2805,291,0 chrVII 863960 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2689,282,0 chrVII 864725 . T C 5327.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.86;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5327,562,0 chrVII 864758 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5037,502,0 chrVII 865450 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.407;QD=23.33;ReadPosRankSum=1.624;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3043,321,0 chrVII 865499 . G C 3948.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.3454;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.22;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3948,409,0 chrVII 865578 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=26.42;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:4227,424,0 chrVII 865622 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=174;Dels=0.00;FS=4.596;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.591;QD=21.26;ReadPosRankSum=1.691;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,169:174:99:3700,390,0 chrVII 865628 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.76;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3830,397,0 chrVII 866222 . T A 1443 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.27;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1476,150,0 chrVII 866494 . T C 3127 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.22;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3160,333,0 chrVII 866978 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.81;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4267,445,0 chrVII 867495 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=25.38;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3401,337,0 chrVII 867496 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.93;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3365,334,0 chrVII 867757 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.993;QD=25.35;ReadPosRankSum=1.686;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3802,399,0 chrVII 868409 . C A 6474.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.2321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.53;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:6474,652,0 chrVII 868460 . T C 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=242;Dels=0.00;FS=2.552;HaplotypeScore=6.7111;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.203;QD=23.34;ReadPosRankSum=1.510;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5649,568,0 chrVII 868485 . G A 6241.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.29;SB=-3.479e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6241,631,0 chrVII 869330 . A G 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=211;Dels=0.00;FS=2.969;HaplotypeScore=20.4013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.664;QD=23.18;ReadPosRankSum=2.426;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4892,511,0 chrVII 869612 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.16;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4656,490,0 chrVII 870131 . C T 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=84.8059;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.385;QD=21.17;ReadPosRankSum=-1.386;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1938,195,0 chrVII 870646 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.66;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3551,372,0 chrVII 870793 . C T 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.359;QD=23.59;ReadPosRankSum=1.670;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2651,270,0 chrVII 870885 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.63;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2183,231,0 chrVII 870916 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.07;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2086,222,0 chrVII 871006 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.49;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2751,276,0 chrVII 871036 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.32;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2818,291,0 chrVII 871126 . A G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=2.948;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.491;QD=23.35;ReadPosRankSum=2.398;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2251,234,0 chrVII 871517 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.28;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1615,165,0 chrVII 872246 . C G 2252 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2285,234,0 chrVII 873389 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=154;Dels=0.00;FS=2.829;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.652;QD=20.99;ReadPosRankSum=2.354;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3267,340,0 chrVII 873392 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.44;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3344,354,0 chrVII 873474 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.78;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4089,406,0 chrVII 873790 . C T 5694.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.9563;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.97;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5694,589,0 chrVII 873895 . G A 5543.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.4359;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.02;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5543,550,0 chrVII 874391 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.16;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2493,249,0 chrVII 874466 . A T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3660,367,0 chrVII 874608 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.43;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1940,195,0 chrVII 875186 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=7.631;HaplotypeScore=4.9268;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.048;QD=23.64;ReadPosRankSum=2.344;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3853,403,0 chrVII 875292 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3387,340,0 chrVII 875496 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2764,276,0 chrVII 875675 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.93;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3174,336,0 chrVII 875748 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=3.022;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.460;QD=24.89;ReadPosRankSum=2.407;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2920,306,0 chrVII 875843 . T G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=4.096;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.720;QD=20.31;ReadPosRankSum=1.701;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2348,252,0 chrVII 875845 . A T 2497 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.71;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2530,255,0 chrVII 876033 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7213;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=26.00;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2425,240,0 chrVII 876057 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.463;QD=23.46;ReadPosRankSum=1.694;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2144,231,0 chrVII 876081 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=25.76;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2300,228,0 chrVII 876154 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=92;Dels=0.00;FS=17.796;HaplotypeScore=8.6095;MLEAC=1;MLEAF=0.500;MQ=48.87;MQ0=3;MQRankSum=-6.450;QD=0.34;ReadPosRankSum=4.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,19:92:61:61,0,1423 chrVII 876387 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=25.82;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1479,153,0 chrVII 876560 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.26;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:723,72,0 chrVII 876569 . G A 497 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=16.57;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,28:30:54:530,54,0 chrVII 876575 . A G 591 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=22.73;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:624,66,0 chrVII 876711 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.078;QD=24.56;ReadPosRankSum=2.406;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2833,294,0 chrVII 876825 . C T 5753.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.8551;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.03;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5753,571,0 chrVII 876915 . A G 7495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=290;Dels=0.00;FS=8.103;HaplotypeScore=12.4293;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.066;QD=25.84;ReadPosRankSum=2.424;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:2,287:290:99:7495,763,0 chrVII 876951 . A G 5353.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.8627;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.38;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5353,559,0 chrVII 876960 . T A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4181;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.36;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5420,553,0 chrVII 877046 . A G 7745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=18.1785;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.115;QD=24.36;ReadPosRankSum=1.677;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:1,314:318:99:7745,811,0 chrVII 877197 . A C 1167 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.537;DP=108;Dels=0.00;FS=1.733;HaplotypeScore=9.1951;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=2.646;QD=10.81;ReadPosRankSum=7.175;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:30,78:108:43:1200,43,0 chrVII 877203 . G A 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.630;DP=99;Dels=0.00;FS=1.646;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.83;MQ0=0;MQRankSum=-2.042;QD=1.35;ReadPosRankSum=-4.429;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:58,41:99:99:164,0,819 chrVII 877206 . G A 1094 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=11.64;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1127,117,0 chrVII 877209 . C T 1008 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=11.45;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1041,114,0 chrVII 877215 . G A 311.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;DP=96;Dels=0.00;FS=5.323;HaplotypeScore=4.0947;MLEAC=1;MLEAF=0.500;MQ=41.89;MQ0=0;MQRankSum=-1.176;QD=3.24;ReadPosRankSum=-4.802;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:61,34:96:99:341,0,520 chrVII 877233 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=14.93;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1571,168,0 chrVII 877958 . T G 5707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.851;QD=24.39;ReadPosRankSum=1.717;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5707,601,0 chrVII 878193 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.18;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1469,150,0 chrVII 878219 . G A 420 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=12.73;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:48:453,48,0 chrVII 878256 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=27.71;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1280,129,0 chrVII 878298 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.91;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1809,180,0 chrVII 878461 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.65;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2031,246,0 chrVII 878463 . T G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=2.989;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.857;QD=16.53;ReadPosRankSum=2.309;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2050,249,0 chrVII 878834 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.00;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2465,264,0 chrVII 878835 . A T 2525 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.57;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2558,267,0 chrVII 878869 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.46;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2738,291,0 chrVII 879079 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=179;Dels=0.00;FS=2.760;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=1.492;QD=23.67;ReadPosRankSum=2.422;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:4237,447,0 chrVII 879125 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=166;Dels=0.00;FS=2.655;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.999;QD=23.56;ReadPosRankSum=2.361;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3911,412,0 chrVII 879163 . T C 3192 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.18;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3225,339,0 chrVII 879230 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=23.68;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2733,276,0 chrVII 879247 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=7.175;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=-0.621;QD=18.93;ReadPosRankSum=2.337;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2115,231,0 chrVII 879267 . C G 2161 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=20.58;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2194,225,0 chrVII 879283 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.383;QD=17.61;ReadPosRankSum=1.696;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1724,180,0 chrVII 879296 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.77;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1863,189,0 chrVII 879340 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.31;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1908,201,0 chrVII 879438 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.81;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1926,204,0 chrVII 879687 . T G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=113;Dels=0.00;FS=2.660;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-2.054;QD=24.79;ReadPosRankSum=2.406;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2834,291,0 chrVII 879737 . T G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.840;QD=24.81;ReadPosRankSum=1.698;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2564,264,0 chrVII 879749 . T A 2422 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.71;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2455,243,0 chrVII 879853 . T A 2428 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.07;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2461,241,0 chrVII 879872 . T G 2266 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.23;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2299,237,0 chrVII 879875 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.44;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2154,234,0 chrVII 879907 . T G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=136;Dels=0.00;FS=12.392;HaplotypeScore=8.2747;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.311;QD=20.85;ReadPosRankSum=2.917;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,130:136:99:2869,291,0 chrVII 880017 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.14;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2301,228,0 chrVII 880304 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2878,297,0 chrVII 880548 . C T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.0641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5267,535,0 chrVII 881235 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.287;DP=156;Dels=0.00;FS=18.478;HaplotypeScore=11.3132;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.142;QD=22.74;ReadPosRankSum=4.218;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:7,148:156:99:3547,381,0 chrVII 881265 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.33;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3917,409,0 chrVII 881307 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8287;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.67;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4697,469,0 chrVII 881397 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.64;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4595,492,0 chrVII 881406 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.96;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4633,478,0 chrVII 881583 . C T 6359.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.4922;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=25.04;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6359,634,0 chrVII 881676 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.034;DP=226;Dels=0.00;FS=10.662;HaplotypeScore=8.2738;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.060;QD=18.77;ReadPosRankSum=3.863;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:6,220:226:99:4242,498,0 chrVII 881678 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.818;DP=227;Dels=0.00;FS=7.946;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.458;QD=18.73;ReadPosRankSum=3.591;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:4251,498,0 chrVII 881694 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=235;Dels=0.00;FS=11.745;HaplotypeScore=9.8364;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.397;QD=21.71;ReadPosRankSum=2.919;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5103,544,0 chrVII 881739 . A T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.7856;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.79;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4853,493,0 chrVII 881907 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.96;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3761,391,0 chrVII 881935 . T C 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=3.180;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.748;QD=24.92;ReadPosRankSum=1.713;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4636,484,0 chrVII 881985 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.57;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4731,475,0 chrVII 882051 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.65;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3163,324,0 chrVII 882099 . A C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.25;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3560,370,0 chrVII 882202 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=24.82;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3036,304,0 chrVII 882264 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=24.08;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2923,306,0 chrVII 882402 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=45.5736;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=23.04;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1323,132,0 chrVII 882416 . T A 1252 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=21.22;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1285,126,0 chrVII 882443 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.64;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1678,174,0 chrVII 882517 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=20.60;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1640,171,0 chrVII 882535 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.9612;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=16.41;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1116,120,0 chrVII 882564 . C T 638 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=12.76;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:72:671,72,0 chrVII 882565 . C T 611 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=13.00;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:644,72,0 chrVII 882573 . T A 548 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;MQRankSum=-1.399;QD=10.54;ReadPosRankSum=1.666;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:63:581,63,0 chrVII 882589 . T C 419 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=9.11;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:51:452,51,0 chrVII 882614 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=13.09;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:753,78,0 chrVII 882652 . G A 772 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=13.54;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:805,84,0 chrVII 882661 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.455;DP=52;Dels=0.00;FS=2.072;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=-0.464;QD=0.63;ReadPosRankSum=3.005;SB=-5.616e+02 GT:AD:DP:GQ:PL 1/1:4,48:52:9:65,9,0 chrVII 882672 . T A 760 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=14.62;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:793,81,0 chrVII 882679 . G C 821 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=14.93;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:854,90,0 chrVII 882684 . T C 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;MQRankSum=-1.669;QD=14.71;ReadPosRankSum=1.669;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:87:842,87,0 chrVII 882692 . A T 850 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;QD=14.66;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:883,96,0 chrVII 882696 . A G 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;MQRankSum=-1.335;QD=14.18;ReadPosRankSum=1.675;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:96:898,96,0 chrVII 883069 . T C 7728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=22.6515;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.684;QD=22.66;ReadPosRankSum=1.701;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:1,336:341:99:7728,805,0 chrVII 883103 . G A 7581.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=2;QD=23.84;SB=-3.545e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:7581,766,0 chrVII 883112 . G A 7244.01 filter AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=4.2285;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=5;QD=23.75;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:7244,712,0 chrVII 883184 . G A 2946 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=15;QD=20.46;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2979,295,0 chrVII 883187 . G A 2822 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=15;QD=18.69;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2855,286,0 chrVII 883250 . G A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=14.3495;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=2;QD=20.16;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:5927,595,0 chrVII 883403 . T G 5718.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.9966;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=8;MQRankSum=1.848;QD=23.63;ReadPosRankSum=2.378;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:6,234:242:99:5718,582,0 chrVII 883457 . A G 4413.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=314;Dels=0.00;FS=3.921;HaplotypeScore=15.9660;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=16;MQRankSum=0.363;QD=14.05;ReadPosRankSum=1.720;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,311:314:99:4413,471,0 chrVII 883496 . A G 3622.01 filter AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=12.3695;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=16;QD=10.98;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:3622,384,0 chrVII 883502 . T C 3447.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.157;DP=316;Dels=0.00;FS=18.373;HaplotypeScore=10.0978;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=16;MQRankSum=-2.759;QD=10.91;ReadPosRankSum=4.167;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:6,309:316:99:3447,366,0 chrVII 884075 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.83;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3184,336,0 chrVII 884168 . C G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5429;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4305,454,0 chrVII 884326 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=14.8236;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.50;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2813,277,0 chrVII 884396 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.47;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:2075,216,0 chrVII 884743 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.34;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4697,493,0 chrVII 885001 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.32;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4086,412,0 chrVII 885109 . C T 4975.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=25.51;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4975,490,0 chrVII 885165 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.5831;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.83;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3949,409,0 chrVII 885186 . G C 3956.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.74;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3956,412,0 chrVII 885274 . T G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=188;Dels=0.00;FS=7.714;HaplotypeScore=10.5575;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.741;QD=19.45;ReadPosRankSum=2.156;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,182:188:99:3656,393,0 chrVII 885279 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.90;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3721,379,0 chrVII 885468 . C G 4528.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.0801;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.83;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4528,478,0 chrVII 885746 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.89;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3258,339,0 chrVII 885870 . T A 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.984;QD=26.22;ReadPosRankSum=1.677;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3278,322,0 chrVII 886023 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=7.381;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.555;QD=22.77;ReadPosRankSum=2.413;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3130,324,0 chrVII 886229 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=144;Dels=0.00;FS=4.089;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.339;QD=24.82;ReadPosRankSum=1.708;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3574,390,0 chrVII 887135 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.06;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2150,225,0 chrVII 887604 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.41;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3967,400,0 chrVII 887698 . G T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.58;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4302,451,0 chrVII 888123 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.67;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1983,201,0 chrVII 888247 . T A 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.821;QD=23.33;ReadPosRankSum=-1.246;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1363,144,0 chrVII 888345 . A T 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.098;QD=21.74;ReadPosRankSum=1.667;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1185,117,0 chrVII 888361 . A T 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.505;QD=23.40;ReadPosRankSum=1.660;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1156,114,0 chrVII 888716 . A G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.021;QD=22.71;ReadPosRankSum=1.689;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,80:84:99:1941,204,0 chrVII 889998 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=200;Dels=0.00;FS=3.032;HaplotypeScore=12.6485;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.540;QD=25.11;ReadPosRankSum=2.388;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:5021,514,0 chrVII 890309 . C T 6374.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.0356;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.12;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6374,637,0 chrVII 891078 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4006,403,0 chrVII 891245 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.4921;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.37;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5240,529,0 chrVII 891293 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=192;Dels=0.00;FS=3.174;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.559;QD=23.59;ReadPosRankSum=1.714;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4529,478,0 chrVII 891371 . T C 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=209;Dels=0.00;FS=2.562;HaplotypeScore=18.2896;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.139;QD=23.94;ReadPosRankSum=2.938;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:5004,511,0 chrVII 891431 . A C 5590.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.4554;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.20;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5590,592,0 chrVII 891611 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.9311;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.61;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4951,520,0 chrVII 891656 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.4435;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4636,460,0 chrVII 891990 . T C 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.001;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.198;QD=24.94;ReadPosRankSum=1.663;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5012,523,0 chrVII 892025 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.61;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4135,435,0 chrVII 892105 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.76;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3492,346,0 chrVII 892112 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.698;QD=21.69;ReadPosRankSum=1.588;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3157,330,0 chrVII 892181 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.67;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3071,324,0 chrVII 892212 . G T 3126 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.61;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3159,321,0 chrVII 892452 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.211;QD=22.67;ReadPosRankSum=1.706;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3048,321,0 chrVII 892563 . A C 2197 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.89;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2230,240,0 chrVII 893054 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2817,280,0 chrVII 893319 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.47;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3989,397,0 chrVII 893535 . A T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.92;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3606,370,0 chrVII 893550 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.28;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3448,343,0 chrVII 894066 . A T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.68;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3751,379,0 chrVII 894078 . T A 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=4.260;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.268;QD=19.93;ReadPosRankSum=1.691;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3348,334,0 chrVII 894109 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=4.424;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.078;QD=19.45;ReadPosRankSum=1.713;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3501,372,0 chrVII 894312 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=26.88;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4408,439,0 chrVII 894336 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.688;QD=25.10;ReadPosRankSum=1.665;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3940,409,0 chrVII 894371 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.43;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2814,282,0 chrVII 894432 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.02;FS=0.000;HaplotypeScore=18.6695;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.39;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3273,345,0 chrVII 894512 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.915;DP=171;Dels=0.01;FS=24.917;HaplotypeScore=58.9541;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.627;QD=20.16;ReadPosRankSum=5.029;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:9,158:169:99:3447,369,0 chrVII 895001 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.60;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2949,292,0 chrVII 895006 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.91;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2793,291,0 chrVII 895091 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.19;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3293,325,0 chrVII 895096 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.34;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3255,339,0 chrVII 895227 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.161;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.426;QD=23.60;ReadPosRankSum=1.709;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3493,361,0 chrVII 895337 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.18;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2983,309,0 chrVII 895555 . A C 2231 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.52;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2264,231,0 chrVII 896456 . T A 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.236;QD=25.08;ReadPosRankSum=1.706;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3310,348,0 chrVII 896532 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2219,225,0 chrVII 897236 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2067,219,0 chrVII 897311 . A G 2281 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2314,237,0 chrVII 897795 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=27.56;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3445,340,0 chrVII 897834 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=27.30;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3849,388,0 chrVII 897873 . G A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.92;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4212,436,0 chrVII 898059 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2112;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.05;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4209,418,0 chrVII 898083 . T C 3934.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.9341;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.70;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3934,417,0 chrVII 898325 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.319;QD=23.07;ReadPosRankSum=1.677;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2917,309,0 chrVII 898435 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3986,418,0 chrVII 898683 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.993;QD=24.89;ReadPosRankSum=1.693;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4431,466,0 chrVII 898738 . C A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4277,427,0 chrVII 898998 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.06;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3828,405,0 chrVII 899421 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.702;QD=23.78;ReadPosRankSum=1.702;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2791,294,0 chrVII 899490 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.176;QD=23.86;ReadPosRankSum=1.707;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:3341,343,0 chrVII 899840 . T A 2382 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.7090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2415,243,0 chrVII 900146 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3844,405,0 chrVII 900645 . C T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4376,448,0 chrVII 901215 . C A 5347.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5347,535,0 chrVII 901763 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.906;QD=23.04;ReadPosRankSum=2.355;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3617,381,0 chrVII 902028 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.044;QD=24.99;ReadPosRankSum=1.710;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3999,418,0 chrVII 902287 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.48;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2005,198,0 chrVII 902312 . G A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DP=126;Dels=0.00;FS=53.557;HaplotypeScore=9.6850;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=0;MQRankSum=-8.047;QD=0.37;ReadPosRankSum=-8.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,41:126:76:76,0,1881 chrVII 902358 . C T 12786.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=19.1880;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=12.79;SB=-1.010e+04 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:12786,1286,0 chrVII 902460 . G A 25604.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=26.7184;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=25.60;SB=-1.040e+04 GT:AD:DP:GQ:PL 1/1:0,987:1000:99:25604,2486,0 chrVII 902486 . C T 19813.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=16.0501;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=19.81;SB=-1.058e+04 GT:AD:DP:GQ:PL 1/1:0,989:1000:99:19813,2031,0 chrVII 902502 . T C 18239.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.875;DP=1000;DS;Dels=0.00;FS=37.796;HaplotypeScore=98.4269;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-3.474;QD=18.24;ReadPosRankSum=7.744;SB=-1.115e+04 GT:AD:DP:GQ:PL 1/1:24,972:1000:99:18239,1896,0 chrVII 902791 . G A 23008.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=123.0071;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.01;SB=-1.304e+04 GT:AD:DP:GQ:PL 1/1:0,971:1000:99:23008,2320,0 chrVII 902985 . A G 20380.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=83.7180;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.648;QD=20.38;ReadPosRankSum=1.721;SB=-9.474e+03 GT:AD:DP:GQ:PL 1/1:1,971:1000:99:20380,2227,0 chrVII 904076 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.850;QD=24.48;ReadPosRankSum=1.711;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4039,426,0 chrVII 904249 . C T 5433.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.72;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5433,544,0 chrVII 904835 . T G 2026 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.02;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2059,216,0 chrVII 905027 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.024;QD=26.08;ReadPosRankSum=1.680;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3442,352,0 chrVII 905694 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.2465;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.10;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,221:224:99:3830,417,0 chrVII 905710 . T G 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=241;Dels=0.00;FS=6.569;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.426;QD=19.11;ReadPosRankSum=1.703;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,235:241:99:4606,478,0 chrVII 906672 . G A 4840.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.08;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4840,505,0 chrVII 906737 . A G 5471.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.4840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.32;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5471,568,0 chrVII 906984 . C T 6952.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.4524;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.94;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6952,694,0 chrVII 907178 . A G 7702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.778;DP=332;Dels=0.00;FS=16.857;HaplotypeScore=15.8713;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.485;QD=23.20;ReadPosRankSum=3.807;SB=-4.257e+03 GT:AD:DP:GQ:PL 1/1:5,324:332:99:7702,799,0 chrVII 907391 . T C 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=259;Dels=0.00;FS=3.904;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.598;QD=22.70;ReadPosRankSum=1.719;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:5878,616,0 chrVII 907442 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.56;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4972,520,0 chrVII 907478 . A T 5558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=3.351;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.870;QD=24.70;ReadPosRankSum=1.655;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5558,574,0 chrVII 907598 . T C 5573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.4589;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.098;QD=22.65;ReadPosRankSum=1.662;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5573,592,0 chrVII 907942 . C G 6479.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=20.3453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.00;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,263:270:99:6479,661,0 chrVII 908054 . G A 6922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.7357;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.095;QD=23.62;ReadPosRankSum=-0.973;SB=-3.989e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:6922,716,0 chrVII 908105 . T C 6687.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=18.8555;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.14;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6687,724,0 chrVII 908207 . G A 6645.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=25.0065;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.56;SB=-3.801e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:6645,664,0 chrVII 908426 . C T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.55;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4871,481,0 chrVII 908432 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.27;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4744,472,0 chrVII 908492 . C A 5850.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.50;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5850,601,0 chrVII 908833 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=26.33;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1455,144,0 chrVII 909179 . G A 2828 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=114.1673;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.59;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2861,291,0 chrVII 909227 . A G 2437 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.48;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2470,264,0 chrVII 909569 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=148;Dels=0.00;FS=9.489;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.352;QD=23.67;ReadPosRankSum=2.924;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3503,361,0 chrVII 909620 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=2.290;QD=24.46;ReadPosRankSum=2.410;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4526,478,0 chrVII 909701 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.40;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4026,400,0 chrVII 909722 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.723;QD=23.41;ReadPosRankSum=2.294;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3699,382,0 chrVII 909875 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.0751;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.19;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4160,436,0 chrVII 909914 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.95;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3644,370,0 chrVII 909923 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.05;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3373,345,0 chrVII 910247 . A C 1040 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.61;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1073,111,0 chrVII 910249 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.77;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:991,105,0 chrVII 910292 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.52;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1200,126,0 chrVII 910327 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=20.87;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1765,177,0 chrVII 910338 . T C 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-1.732;QD=20.64;ReadPosRankSum=1.691;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1787,192,0 chrVII 910494 . T G 3063 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=26.63;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3096,321,0 chrVII 910560 . A T 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=118;Dels=0.00;FS=5.792;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=1.095;QD=23.26;ReadPosRankSum=2.888;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2778,288,0 chrVII 910572 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.24;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2502,264,0 chrVII 910638 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.00;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2695,271,0 chrVII 910647 . T C 2733 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.77;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2766,279,0 chrVII 910992 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=19.4224;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.85;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3158,324,0 chrVII 911134 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.70;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2825,288,0 chrVII 911141 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.10;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2734,279,0 chrVII 911221 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6935;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.97;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4479,477,0 chrVII 911377 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.475;QD=25.00;ReadPosRankSum=1.706;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3425,360,0 chrVII 911599 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=9.210;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=23.13;ReadPosRankSum=2.386;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1837,192,0 chrVII 911822 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.59;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1523,165,0 chrVII 911857 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.74;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2835,280,0 chrVII 911978 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2875,280,0 chrVII 912148 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.021;HaplotypeScore=9.1514;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.471;QD=24.00;ReadPosRankSum=1.667;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3816,411,0 chrVII 912555 . C G 5214.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.09;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5214,567,0 chrVII 912560 . C T 5470.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.60;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5470,547,0 chrVII 912779 . T C 5137.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.5577;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.70;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5137,532,0 chrVII 913000 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=150;Dels=0.00;FS=2.707;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.237;QD=25.54;ReadPosRankSum=2.368;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3831,408,0 chrVII 913057 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=6.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.984;QD=21.58;ReadPosRankSum=2.401;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3301,354,0 chrVII 913063 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.36;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3444,343,0 chrVII 913078 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.58;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3883,391,0 chrVII 913213 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=158;Dels=0.00;FS=6.565;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.743;QD=22.14;ReadPosRankSum=2.105;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3498,369,0 chrVII 913222 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.13;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3475,366,0 chrVII 913309 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.76;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4225,439,0 chrVII 913551 . G A 5259.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.91;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5259,529,0 chrVII 913794 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.9842;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.42;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4145,415,0 chrVII 913905 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.565;HaplotypeScore=12.0034;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.475;QD=23.53;ReadPosRankSum=1.712;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4141,427,0 chrVII 914107 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.3408;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.14;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4757,475,0 chrVII 914517 . C T 5624.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=16.6237;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.13;SB=-3.878e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:5624,559,0 chrVII 914538 . G A 5627.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=9.3339;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.47;SB=-3.998e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:5627,571,0 chrVII 914816 . C G 3209 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.92;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3242,336,0 chrVII 915330 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=3.473;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=24.27;ReadPosRankSum=1.715;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4805,511,0 chrVII 915876 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.587;HaplotypeScore=16.2952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.552;QD=25.35;ReadPosRankSum=1.713;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4716,490,0 chrVII 915953 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.64;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4805,499,0 chrVII 916164 . A G 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=195;Dels=0.00;FS=7.004;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.209;QD=22.49;ReadPosRankSum=2.398;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:2,190:195:99:4386,474,0 chrVII 916305 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.30;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3728,396,0 chrVII 916324 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.688;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.668;QD=23.75;ReadPosRankSum=1.607;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3966,412,0 chrVII 916383 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=180;Dels=0.00;FS=11.089;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.219;QD=21.32;ReadPosRankSum=2.893;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3838,403,0 chrVII 916389 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.5334;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.28;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4000,415,0 chrVII 916476 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.63;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3326,348,0 chrVII 916672 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.82;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3010,304,0 chrVII 916853 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=7.095;HaplotypeScore=7.1347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.105;QD=21.55;ReadPosRankSum=2.404;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2360,252,0 chrVII 916953 . T C 2650 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2683,282,0 chrVII 917004 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.09;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2877,286,0 chrVII 917241 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.62;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2643,267,0 chrVII 917280 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.79;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2950,292,0 chrVII 917290 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9506;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.78;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2799,282,0 chrVII 917370 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.74;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2598,256,0 chrVII 917381 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.472;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.880;QD=20.90;ReadPosRankSum=1.677;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2687,282,0 chrVII 917454 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=7.176;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.159;QD=21.32;ReadPosRankSum=2.397;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3060,324,0 chrVII 917483 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.80;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2860,291,0 chrVII 917548 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0406;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=26.98;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3346,334,0 chrVII 917785 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.26;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3033,304,0 chrVII 917879 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=138;Dels=0.00;FS=3.310;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.681;QD=23.43;ReadPosRankSum=1.706;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3266,333,0 chrVII 918026 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2780,288,0 chrVII 918497 . A C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.253;QD=21.75;ReadPosRankSum=1.687;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3327,348,0 chrVII 918518 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.35;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,140:147:99:3432,354,0 chrVII 918731 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.97;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3189,313,0 chrVII 918781 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.01;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2518,261,0 chrVII 918808 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.182;QD=22.08;ReadPosRankSum=1.677;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2815,300,0 chrVII 918846 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1613;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.97;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4170,433,0 chrVII 918902 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4518,463,0 chrVII 918971 . T C 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.745;QD=25.69;ReadPosRankSum=1.674;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4624,475,0 chrVII 919258 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.87;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3631,381,0 chrVII 919382 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2416,258,0 chrVII 919513 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.56;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2244,225,0 chrVII 919531 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.99;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1922,198,0 chrVII 919561 . A T 2186 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.26;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2219,222,0 chrVII 919661 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.79;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2586,258,0 chrVII 920047 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=0.856;QD=21.56;ReadPosRankSum=1.690;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1844,195,0 chrVII 920060 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=20.86;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1618,168,0 chrVII 920114 . T A 614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=79.3862;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;MQRankSum=-2.278;QD=7.14;ReadPosRankSum=2.049;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:39:647,39,0 chrVII 920150 . C G 1828 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=14.74;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1861,192,0 chrVII 920237 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=17.56;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2913,295,0 chrVII 920238 . A G 2735 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.68;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2768,294,0 chrVII 920740 . A G 2759 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2792,300,0 chrVII 920955 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=21.96;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1570,168,0 chrVII 920988 . C A 1987 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.3639;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=23.65;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2020,201,0 chrVII 921308 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.8094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4818,484,0 chrVII 921947 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1694,180,0 chrVII 923476 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.771;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.203;QD=21.31;ReadPosRankSum=1.684;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1567,165,0 chrVII 923812 . C G 2861 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2894,312,0 chrVII 923971 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=27.14;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3501,346,0 chrVII 924839 . G C 4829.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2102;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.11;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4829,522,0 chrVII 926236 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=3.036;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.265;QD=24.39;ReadPosRankSum=2.407;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2862,294,0 chrVII 927088 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2803,294,0 chrVII 927341 . T A 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=6.902;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.007;QD=24.67;ReadPosRankSum=2.375;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2475,243,0 chrVII 927609 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.913;QD=24.42;ReadPosRankSum=1.638;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2719,279,0 chrVII 928933 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2721,273,0 chrVII 930875 . T G 2385 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=11.9805;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.85;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2418,255,0 chrVII 931025 . T C 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=0.057;QD=22.31;ReadPosRankSum=2.146;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,63:67:99:1528,141,0 chrVII 931109 . C G 2215 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=24.61;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2248,240,0 chrVII 931830 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=103;Dels=0.00;FS=5.749;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=1;MQRankSum=-1.050;QD=21.78;ReadPosRankSum=2.872;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2276,246,0 chrVII 932243 . A G 2365 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.16;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2398,243,0 chrVII 932463 . T A 2215 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2248,225,0 chrVII 932498 . T C 2380 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2413,255,0 chrVII 933345 . G C 2967 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.72;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3000,312,0 chrVII 933869 . G T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.54;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3370,343,0 chrVII 934463 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2592,261,0 chrVII 934700 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4108,412,0 chrVII 934919 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.5847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4405,436,0 chrVII 935000 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.53;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4244,439,0 chrVII 935054 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.643;QD=23.47;ReadPosRankSum=1.687;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3662,396,0 chrVII 935861 . T A 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=24.32;ReadPosRankSum=1.691;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2076,216,0 chrVII 936413 . G C 5357.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.3556;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.02;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5357,574,0 chrVII 937218 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.291;QD=26.99;ReadPosRankSum=1.704;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3374,346,0 chrVII 937613 . T G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.4237;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.058;QD=24.75;ReadPosRankSum=0.311;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4406,463,0 chrVII 937780 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.99;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3724,385,0 chrVII 937842 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=26.13;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3221,322,0 chrVII 937863 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.587;QD=23.92;ReadPosRankSum=1.644;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2856,291,0 chrVII 938447 . T C 5652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=222;Dels=0.00;FS=3.030;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.689;QD=25.46;ReadPosRankSum=2.427;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,217:222:99:5652,589,0 chrVII 938528 . C A 4898.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.25;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4898,493,0 chrVII 938768 . A C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.02;FS=6.755;HaplotypeScore=6.7335;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.750;QD=25.14;ReadPosRankSum=2.393;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3344,348,0 chrVII 938789 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.15;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3430,352,0 chrVII 939128 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4095,406,0 chrVII 939290 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6788;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2384,258,0 chrVII 939705 . T G 2771 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=3.658;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.439;QD=20.99;ReadPosRankSum=1.679;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2804,294,0 chrVII 939707 . T G 2767 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.45;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2800,288,0 chrVII 939713 . A G 2773 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.341;QD=21.01;ReadPosRankSum=1.680;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2806,294,0 chrVII 940082 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.44;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2893,286,0 chrVII 940459 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.74;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3384,331,0 chrVII 940588 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.63;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3460,358,0 chrVII 940669 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.31;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1875,186,0 chrVII 940722 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1617,159,0 chrVII 941028 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8441;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.62;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2749,282,0 chrVII 942040 . G C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.80;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4094,424,0 chrVII 942366 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.5992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3988,397,0 chrVII 942469 . T G 3316.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3316,342,0 chrVII 942635 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.5654;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.80;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3034,307,0 chrVII 943671 . C T 4800.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.37;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4800,481,0 chrVII 944106 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3343,337,0 chrVII 944660 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.155;QD=20.77;ReadPosRankSum=1.706;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2775,294,0 chrVII 944684 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.22;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2274,240,0 chrVII 944981 . T A 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=4.574;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.168;QD=23.85;ReadPosRankSum=1.692;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2084,210,0 chrVII 945166 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.50;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2042,210,0 chrVII 945207 . G T 2621 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.02;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2654,273,0 chrVII 945978 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.51;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3950,397,0 chrVII 946206 . T C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=126;Dels=0.00;FS=10.232;HaplotypeScore=4.7919;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.280;QD=24.11;ReadPosRankSum=2.944;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:3071,330,0 chrVII 946228 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.65;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2495,249,0 chrVII 946366 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=23.58;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2674,268,0 chrVII 946369 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=23.85;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2728,273,0 chrVII 946383 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=6.238;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.326;QD=23.10;ReadPosRankSum=2.401;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2389,249,0 chrVII 946464 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3539,372,0 chrVII 946664 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.44;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4195,442,0 chrVII 946974 . A G 2460 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.60;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2493,255,0 chrVII 947080 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=96;Dels=0.00;FS=6.136;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.526;QD=23.21;ReadPosRankSum=2.927;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2261,234,0 chrVII 947252 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.90;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2934,292,0 chrVII 947600 . A G 2473 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.25;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2506,270,0 chrVII 948145 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.11;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3421,340,0 chrVII 948202 . T G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=132;Dels=0.00;FS=3.634;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.668;QD=23.91;ReadPosRankSum=1.678;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,126:132:99:3189,333,0 chrVII 948229 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.02;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2796,294,0 chrVII 948283 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.77;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2659,267,0 chrVII 948447 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=134;Dels=0.00;FS=6.093;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.534;QD=25.66;ReadPosRankSum=2.948;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3439,358,0 chrVII 948586 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7793;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.01;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3866,397,0 chrVII 948604 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2934;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.47;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4084,421,0 chrVII 948634 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.44;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4383,436,0 chrVII 948715 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.8738;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4237,418,0 chrVII 949001 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.81;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2433,243,0 chrVII 949014 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;DP=95;Dels=0.00;FS=7.936;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.563;QD=23.14;ReadPosRankSum=0.773;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2231,208,0 chrVII 949072 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=20.04;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:955,102,0 chrVII 949596 . A G 5284.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.81;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5284,550,0 chrVII 949816 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.0200;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.24;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4625,457,0 chrVII 950329 . C A 5367.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5367,541,0 chrVII 950863 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0705;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.181;QD=22.16;ReadPosRankSum=1.686;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3346,363,0 chrVII 951500 . G C 4171.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.91;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4171,439,0 chrVII 951635 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2824;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.17;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2999,309,0 chrVII 951655 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.91;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2806,279,0 chrVII 951689 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.536;QD=22.51;ReadPosRankSum=1.682;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3162,330,0 chrVII 951726 . C G 3153 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5848;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.25;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3186,328,0 chrVII 951733 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.018;QD=24.66;ReadPosRankSum=1.706;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3263,325,0 chrVII 951825 . A T 407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=79.1150;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.105;QD=4.90;ReadPosRankSum=0.075;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:57:440,57,0 chrVII 951976 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=27.05;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3652,364,0 chrVII 952051 . T G 4189.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.67;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4189,442,0 chrVII 952076 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.704;QD=23.46;ReadPosRankSum=1.714;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4505,466,0 chrVII 952857 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=3.102;HaplotypeScore=8.6583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.371;QD=24.07;ReadPosRankSum=1.696;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4621,490,0 chrVII 953316 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.468;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.577;QD=24.68;ReadPosRankSum=1.713;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4443,469,0 chrVII 953555 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=22.61;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2678,279,0 chrVII 953569 . T A 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=5.541;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;MQRankSum=1.500;QD=21.08;ReadPosRankSum=2.939;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2457,249,0 chrVII 953572 . C A 2311 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=19.92;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2344,252,0 chrVII 953583 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=20.38;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2438,261,0 chrVII 953629 . A C 2538 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.80;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2571,270,0 chrVII 953711 . C T 3208 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=24.12;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3241,325,0 chrVII 953716 . C T 3070 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=23.26;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3103,312,0 chrVII 953718 . G T 2938 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=22.09;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2971,312,0 chrVII 953861 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=23.6798;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.669;QD=22.84;ReadPosRankSum=1.711;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3837,405,0 chrVII 953935 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=142;Dels=0.03;FS=5.940;HaplotypeScore=27.4632;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.146;QD=22.45;ReadPosRankSum=2.891;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3221,339,0 chrVII 954301 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=2.629;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.824;QD=23.05;ReadPosRankSum=2.320;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2661,279,0 chrVII 954359 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.6839;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.093;QD=23.21;ReadPosRankSum=1.708;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3296,342,0 chrVII 954455 . G C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.251;QD=25.38;ReadPosRankSum=0.833;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3375,349,0 chrVII 954667 . C G 3151 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.03;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3184,333,0 chrVII 954681 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=-0.326;QD=20.93;ReadPosRankSum=1.706;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2859,300,0 chrVII 954701 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9955;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.99;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2832,297,0 chrVII 954734 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.704;QD=20.15;ReadPosRankSum=1.704;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2552,264,0 chrVII 954914 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.06;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4186,439,0 chrVII 954938 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.68;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3741,396,0 chrVII 955008 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.32;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2622,270,0 chrVII 955019 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.57;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2583,273,0 chrVII 955104 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.69;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3753,370,0 chrVII 955246 . G C 2622 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.48;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2655,291,0 chrVII 955247 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=7.196;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.730;QD=20.77;ReadPosRankSum=2.370;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2588,288,0 chrVII 955260 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.81;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2978,295,0 chrVII 955274 . A C 2820 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.29;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2853,300,0 chrVII 955379 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.11;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3399,343,0 chrVII 955592 . A T 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.2910;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.210;QD=25.01;ReadPosRankSum=1.680;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3301,328,0 chrVII 955670 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=2.964;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=1.220;QD=22.80;ReadPosRankSum=2.413;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3111,321,0 chrVII 955679 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.51;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3160,313,0 chrVII 955691 . A C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.259;QD=20.88;ReadPosRankSum=1.705;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2727,285,0 chrVII 955696 . T C 2674 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.41;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2707,288,0 chrVII 955819 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.74;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2977,295,0 chrVII 955886 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=6.620;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.163;QD=22.76;ReadPosRankSum=2.418;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3619,384,0 chrVII 955952 . C G 2617 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.76;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2650,276,0 chrVII 955973 . T A 2746 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.88;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2779,291,0 chrVII 956057 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.07;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3101,324,0 chrVII 956065 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=129;Dels=0.00;FS=5.744;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.614;QD=21.42;ReadPosRankSum=2.866;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2796,291,0 chrVII 956093 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.287;QD=22.05;ReadPosRankSum=1.707;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3098,324,0 chrVII 956144 . C G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.42;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3453,372,0 chrVII 956159 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.938;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.066;QD=23.73;ReadPosRankSum=1.643;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3702,379,0 chrVII 956182 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.46;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3144,324,0 chrVII 956252 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.07;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3414,363,0 chrVII 956270 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.93;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3877,397,0 chrVII 956516 . T G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=4.170;HaplotypeScore=9.5559;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.380;QD=23.04;ReadPosRankSum=1.624;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3005,299,0 chrVII 956576 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.26;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3361,334,0 chrVII 956708 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8058;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.52;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3005,315,0 chrVII 956731 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.97;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3307,331,0 chrVII 956798 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.46;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4305,456,0 chrVII 956849 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.75;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4145,436,0 chrVII 957005 . A T 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=164;Dels=0.00;FS=2.972;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.142;QD=25.18;ReadPosRankSum=2.405;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4129,412,0 chrVII 957266 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.75;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1862,189,0 chrVII 957426 . G A 697 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=21.12;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:730,72,0 chrVII 957431 . C T 638 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=21.27;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:671,66,0 chrVII 957465 . A G 382 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=16.61;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:415,45,0 chrVII 957479 . G A 169.06 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9623;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=8.45;SB=-2.331e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:21:202,21,0 chrVII 957482 . G A 173.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.248;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.8953;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;MQRankSum=0.083;QD=8.24;ReadPosRankSum=0.248;SB=-2.171e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:21:206,21,0 chrVII 957485 . G A 166.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.861;DP=22;Dels=0.00;FS=6.193;HaplotypeScore=17.4068;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=0.478;QD=7.55;ReadPosRankSum=-0.383;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:21:199,21,0 chrVII 958076 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=23.34;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2110,219,0 chrVII 958078 . A T 2174 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=23.63;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2207,225,0 chrVII 958233 . G A 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.060;QD=24.92;ReadPosRankSum=0.926;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2924,303,0 chrVII 958252 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=25.36;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2924,289,0 chrVII 958287 . A T 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.3455;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.762;QD=24.78;ReadPosRankSum=1.704;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3155,307,0 chrVII 958374 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.497;DP=117;Dels=0.00;FS=1.851;HaplotypeScore=4.6497;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-1.610;QD=16.47;ReadPosRankSum=3.133;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:5,112:117:99:1960,198,0 chrVII 958376 . C G 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.116;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2705;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-0.240;QD=15.88;ReadPosRankSum=1.095;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:1923,201,0 chrVII 958479 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.42;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3736,393,0 chrVII 958516 . T C 4924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.147;QD=25.65;ReadPosRankSum=2.347;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4924,505,0 chrVII 958592 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.463;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.292;QD=23.97;ReadPosRankSum=1.715;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4842,508,0 chrVII 958623 . A C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.165;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7072;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.132;QD=22.92;ReadPosRankSum=-0.334;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3943,400,0 chrVII 958955 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.25;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2356,231,0 chrVII 959010 . G T 2370 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.94;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2403,252,0 chrVII 959502 . A C 4491.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=25.23;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4491,475,0 chrVII 959629 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.528;QD=25.03;ReadPosRankSum=1.605;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3429,352,0 chrVII 959802 . A C 397 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=3.54;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:45:430,45,0 chrVII 960080 . T C 5646.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.78;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5646,586,0 chrVII 960297 . A G 5266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=240;Dels=0.00;FS=2.902;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.303;QD=21.94;ReadPosRankSum=2.388;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5266,562,0 chrVII 960362 . C A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.19;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4535,451,0 chrVII 960936 . A G 5183.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.41;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5183,547,0 chrVII 960996 . T G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.048;QD=22.79;ReadPosRankSum=1.711;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3715,405,0 chrVII 962129 . A T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1051;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.21;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3827,376,0 chrVII 962982 . A T 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.884;QD=24.28;ReadPosRankSum=1.697;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2412,252,0 chrVII 963097 . C G 3005 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3038,318,0 chrVII 963805 . C T 4907.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.17;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4907,493,0 chrVII 963897 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.95;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4503,457,0 chrVII 963916 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.41;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4706,478,0 chrVII 963952 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2341;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.56;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3578,384,0 chrVII 964040 . C G 3180 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8647;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.09;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3213,336,0 chrVII 964269 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.592;QD=26.10;ReadPosRankSum=1.709;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3863,405,0 chrVII 964575 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=4.055;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.071;QD=24.55;ReadPosRankSum=1.692;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4247,442,0 chrVII 965476 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3466,343,0 chrVII 965676 . T G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.125;QD=24.55;ReadPosRankSum=1.696;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2439,252,0 chrVII 965972 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1020,111,0 chrVII 966520 . T G 3148 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3181,342,0 chrVII 966638 . T G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=4.040;HaplotypeScore=8.8017;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.747;QD=22.18;ReadPosRankSum=1.637;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2495,261,0 chrVII 967795 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.586;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.143;QD=23.47;ReadPosRankSum=1.709;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3638,381,0 chrVII 969486 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4562,472,0 chrVII 970290 . A T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.5927;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.90;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3710,370,0 chrVII 971272 . C T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.0707;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.28;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4904,484,0 chrVII 971305 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=194;Dels=0.00;FS=8.915;HaplotypeScore=14.1936;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.882;QD=23.57;ReadPosRankSum=3.378;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4572,475,0 chrVII 971746 . C T 6447.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.8691;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.79;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6447,640,0 chrVII 972322 . T C 5293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=227;Dels=0.00;FS=3.474;HaplotypeScore=15.1540;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.686;QD=23.32;ReadPosRankSum=1.702;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5293,544,0 chrVII 972982 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.620;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.5594;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.695;QD=19.46;ReadPosRankSum=-0.272;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3639,347,0 chrVII 973057 . G A 5710.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.9790;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.19;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5710,574,0 chrVII 973111 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=165;Dels=0.00;FS=6.070;HaplotypeScore=10.2258;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=2.147;QD=22.39;ReadPosRankSum=2.896;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3695,396,0 chrVII 973243 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.4462;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.91;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5069,508,0 chrVII 974583 . A C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=148;Dels=0.00;FS=6.671;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.749;QD=23.55;ReadPosRankSum=2.416;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3485,366,0 chrVII 974638 . A G 2403 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.67;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2436,249,0 chrVII 974639 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.97;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2468,261,0 chrVII 974684 . A T 2713 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.22;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2746,291,0 chrVII 975047 . T C 5128.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.39;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5128,526,0 chrVII 975265 . A C 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=4.002;HaplotypeScore=17.1067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.807;QD=23.82;ReadPosRankSum=1.696;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4598,484,0 chrVII 975368 . A G 4912.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.1761;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4912,528,0 chrVII 975463 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.91;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5530,547,0 chrVII 975538 . A C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.4299;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.138;QD=22.37;ReadPosRankSum=0.466;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4227,444,0 chrVII 976931 . T C 2295 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4131;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.91;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2328,249,0 chrVII 979545 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.569;QD=23.79;ReadPosRankSum=1.587;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3426,363,0 chrVII 979647 . T A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7478;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.88;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3931,414,0 chrVII 979683 . A C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9299;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.77;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3875,423,0 chrVII 983018 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=22.04;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3636,364,0 chrVII 983061 . G C 3318.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=19.75;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3318,348,0 chrVII 983063 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=20.04;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3286,328,0 chrVII 983089 . T C 3041 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;QD=16.62;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3074,318,0 chrVII 983091 . G C 3051 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=16.86;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3084,318,0 chrVII 983112 . G A 2986 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=16.05;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3019,304,0 chrVII 983114 . T C 2925 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=0.454;QD=15.64;ReadPosRankSum=1.714;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:2958,306,0 chrVII 983122 . G C 2220 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=13.62;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2253,237,0 chrVII 983124 . A T 2331 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=14.30;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2364,237,0 chrVII 983125 . A G 2222 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=13.63;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2255,237,0 chrVII 983126 . C T 2361 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=14.40;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2394,237,0 chrVII 983160 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-0.328;QD=11.64;ReadPosRankSum=1.709;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:1814,189,0 chrVII 983164 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;QD=11.69;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1775,177,0 chrVII 983376 . T A 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.007;QD=21.84;ReadPosRankSum=1.678;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2851,297,0 chrVII 983588 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.22;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2983,298,0 chrVII 984033 . C T 6683.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.5222;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.00;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6683,694,0 chrVII 984084 . A G 6026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=245;Dels=0.00;FS=5.947;HaplotypeScore=17.0780;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.017;QD=24.60;ReadPosRankSum=2.938;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:3,240:245:99:6026,622,0 chrVII 984165 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.3700;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.97;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4226,445,0 chrVII 984317 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.68;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3379,354,0 chrVII 984362 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.68;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3266,316,0 chrVII 984558 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=122;Dels=0.01;FS=7.335;HaplotypeScore=16.9702;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.427;QD=23.76;ReadPosRankSum=2.366;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2932,303,0 chrVII 984603 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.50;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2949,303,0 chrVII 984677 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.271;QD=23.06;ReadPosRankSum=1.678;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3008,309,0 chrVII 985136 . C T 5831.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.6308;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.24;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5831,580,0 chrVII 985210 . T C 5486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=252;Dels=0.00;FS=10.410;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.185;QD=21.77;ReadPosRankSum=2.956;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5486,577,0 chrVII 985218 . G A 5630.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.2748;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.49;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5630,586,0 chrVII 985412 . T G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=203;Dels=0.00;FS=8.058;HaplotypeScore=19.5387;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.105;QD=18.62;ReadPosRankSum=2.376;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,197:203:99:3780,402,0 chrVII 985797 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=25.97;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:96:968,96,0 chrVII 985817 . G A 928 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:961,105,0 chrVII 985834 . T A 930 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.026;QD=15.76;ReadPosRankSum=2.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:99:963,105,0 chrVII 985898 . A G 2272 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.82;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2305,237,0 chrVII 986049 . A C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=17.3516;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.20;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4132,435,0 chrVII 986277 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.0569;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.35;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4822,478,0 chrVII 986380 . A T 5212.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.1720;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.16;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5212,526,0 chrVII 986418 . C T 5935.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.63;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5935,592,0 chrVII 986601 . T C 5702.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.3594;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.37;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5702,598,0 chrVII 986691 . T A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4135,412,0 chrVII 986764 . G T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.8132;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.35;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3934,394,0 chrVII 986783 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.81;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3399,340,0 chrVII 986821 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.07;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3234,336,0 chrVII 986874 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=27.52;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4046,400,0 chrVII 986910 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.01;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3180,313,0 chrVII 986969 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.54;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2316,243,0 chrVII 986990 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.23;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2262,240,0 chrVII 987011 . T A 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=7.463;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.037;QD=20.83;ReadPosRankSum=2.380;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2970,315,0 chrVII 987032 . C A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.70;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3359,331,0 chrVII 987084 . T G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=156;Dels=0.00;FS=7.360;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.717;QD=17.22;ReadPosRankSum=2.385;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,150:156:99:2719,285,0 chrVII 987134 . T A 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5793;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.752;QD=16.98;ReadPosRankSum=1.697;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1714,174,0 chrVII 987273 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.74;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2343,249,0 chrVII 987364 . A T 1485 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=130.7225;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=10.84;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,131:136:99:1518,191,0 chrVII 987417 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=20.5381;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.069;QD=21.49;ReadPosRankSum=2.388;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3482,363,0 chrVII 987450 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.113;QD=22.50;ReadPosRankSum=1.674;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4027,421,0 chrVII 987489 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.39;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2963,303,0 chrVII 987590 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.74;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3774,376,0 chrVII 987595 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.11;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3800,370,0 chrVII 987713 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=3.053;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.188;QD=26.93;ReadPosRankSum=2.400;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2672,267,0 chrVII 987788 . T G 1366 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.15;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1399,147,0 chrVII 987829 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.34;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2087,213,0 chrVII 987872 . T G 1578 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=22.54;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1611,171,0 chrVII 987900 . T G 729 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=16.95;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:84:762,84,0 chrVII 987926 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=8.46;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:33:329,33,0 chrVII 987961 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=14.61;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1070,114,0 chrVII 987973 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=14.57;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1155,117,0 chrVII 987979 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=14.27;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1146,117,0 chrVII 987992 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=14.30;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1277,132,0 chrVII 988045 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.60;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1496,153,0 chrVII 988108 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=104;Dels=0.00;FS=2.533;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.777;QD=26.08;ReadPosRankSum=2.933;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2745,288,0 chrVII 988142 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=22.55;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3405,340,0 chrVII 988162 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-0.329;QD=20.64;ReadPosRankSum=1.668;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3365,363,0 chrVII 988195 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=20.39;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3384,351,0 chrVII 988333 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.27;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3106,312,0 chrVII 988358 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.74;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3001,298,0 chrVII 988387 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.59;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3366,337,0 chrVII 988528 . C T 5119.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2259;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.34;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5119,523,0 chrVII 989361 . C T 5338.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4510;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.79;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5338,532,0 chrVII 989510 . A G 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.696;QD=24.15;ReadPosRankSum=2.389;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3936,409,0 chrVII 989604 . T C 2445 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.07;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2478,255,0 chrVII 989736 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.382;QD=21.98;ReadPosRankSum=1.615;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1330,138,0 chrVII 989845 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=26.01;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2426,240,0 chrVII 989850 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=2.589;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.680;QD=23.60;ReadPosRankSum=2.398;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2299,231,0 chrVII 990356 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.92;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2508,252,0 chrVII 990395 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.5656;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=25.44;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3409,354,0 chrVII 990478 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=25.16;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3027,301,0 chrVII 990505 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2986;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.746;QD=21.76;ReadPosRankSum=1.705;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2884,306,0 chrVII 990538 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.08;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3058,312,0 chrVII 990540 . A C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.964;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.038;QD=21.51;ReadPosRankSum=1.707;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2980,315,0 chrVII 990576 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=18.84;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2878,291,0 chrVII 990609 . G T 1978 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=16.08;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2011,198,0 chrVII 990610 . G C 1897 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;QD=15.06;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1930,198,0 chrVII 990611 . A C 1871 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=14.62;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1904,201,0 chrVII 990621 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=17.33;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2442,243,0 chrVII 990659 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.18;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2596,276,0 chrVII 990718 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=140;Dels=0.00;FS=7.943;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=1.229;QD=23.06;ReadPosRankSum=2.397;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3261,345,0 chrVII 990841 . C A 2883 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=26.69;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2916,295,0 chrVII 990893 . C A 2502 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.02;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2535,252,0 chrVII 990971 . A T 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.596;QD=25.00;ReadPosRankSum=1.675;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1558,165,0 chrVII 991004 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=25.77;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1966,195,0 chrVII 991010 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.82;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1845,183,0 chrVII 991027 . C G 1843 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.8298;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.63;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1876,198,0 chrVII 991617 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.28;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3934,400,0 chrVII 991689 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.733;QD=22.05;ReadPosRankSum=1.711;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3617,376,0 chrVII 991695 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.78;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3782,376,0 chrVII 991740 . C G 4100.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.65;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4100,424,0 chrVII 991938 . G A 5842.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=25.40;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5842,613,0 chrVII 991998 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.638;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.962;QD=24.14;ReadPosRankSum=1.671;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4152,424,0 chrVII 992004 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.292;QD=23.52;ReadPosRankSum=1.690;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3975,417,0 chrVII 992205 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=5.452;HaplotypeScore=13.7595;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.490;QD=24.58;ReadPosRankSum=1.713;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4596,490,0 chrVII 992313 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7369;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.34;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4089,403,0 chrVII 992385 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.40;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3830,402,0 chrVII 992448 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4158,421,0 chrVII 992799 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=25.44;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4019,400,0 chrVII 992805 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.80;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3819,370,0 chrVII 992889 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=141;Dels=0.00;FS=6.113;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.835;QD=22.64;ReadPosRankSum=2.936;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3225,339,0 chrVII 994032 . A C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=2.976;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.929;QD=22.70;ReadPosRankSum=2.406;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3881,414,0 chrVII 994228 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3784,408,0 chrVII 994491 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=25.66;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3901,388,0 chrVII 994520 . C G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=24.11;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3857,400,0 chrVII 994656 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=17.84;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2584,276,0 chrVII 994670 . T A 2404 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=17.81;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2437,240,0 chrVII 994685 . A G 2089 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.712;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;MQRankSum=-1.112;QD=15.59;ReadPosRankSum=-1.267;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2122,228,0 chrVII 994687 . T C 2191 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=0;QD=16.47;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2224,228,0 chrVII 994688 . T C 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.802;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;MQRankSum=-1.548;QD=15.62;ReadPosRankSum=1.706;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2095,228,0 chrVII 994715 . A G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=0.247;QD=16.84;ReadPosRankSum=1.709;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2526,270,0 chrVII 994782 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=20.50;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2309,231,0 chrVII 994826 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=18.56;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1833,183,0 chrVII 994829 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=19.03;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1860,189,0 chrVII 995040 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=1;QD=22.87;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2000,213,0 chrVII 995093 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=1;QD=18.59;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1334,132,0 chrVII 995121 . G T 1272 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=16.96;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1305,132,0 chrVII 995158 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.140;QD=21.42;ReadPosRankSum=1.687;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1661,177,0 chrVII 995225 . C A 2583 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.37;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2616,261,0 chrVII 995268 . T C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=3.036;HaplotypeScore=5.9485;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=1.453;QD=21.49;ReadPosRankSum=0.795;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2526,270,0 chrVII 995282 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=102.9371;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=18.22;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2402,237,0 chrVII 995326 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.93;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:2929,295,0 chrVII 995359 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.00;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3542,355,0 chrVII 995370 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.798;QD=22.08;ReadPosRankSum=1.687;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3378,346,0 chrVII 995395 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.77;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3268,345,0 chrVII 995429 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.70;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2789,279,0 chrVII 995528 . A C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.5883;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.755;QD=23.00;ReadPosRankSum=1.695;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4347,462,0 chrVII 995575 . A G 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;DP=196;Dels=0.00;FS=17.304;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.582;QD=23.77;ReadPosRankSum=3.721;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:5,190:196:99:4659,487,0 chrVII 995637 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.04;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4533,457,0 chrVII 995719 . A C 5030.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.18;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5030,529,0 chrVII 995895 . A T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4610,481,0 chrVII 996064 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.28;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3445,355,0 chrVII 996153 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.46;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3589,378,0 chrVII 996317 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.537;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.509;QD=24.19;ReadPosRankSum=1.707;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3411,366,0 chrVII 996354 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=134;Dels=0.00;FS=9.329;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-1.023;QD=23.40;ReadPosRankSum=2.857;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3169,330,0 chrVII 996376 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=115.0145;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.23;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2960,306,0 chrVII 996426 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.929;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.026;QD=23.38;ReadPosRankSum=2.415;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3344,351,0 chrVII 996469 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.87;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3606,378,0 chrVII 997222 . T G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=150;Dels=0.00;FS=3.039;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.215;QD=21.29;ReadPosRankSum=2.415;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,141:150:99:3227,342,0 chrVII 997225 . A G 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=143;Dels=0.00;FS=13.527;HaplotypeScore=6.8832;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.302;QD=21.73;ReadPosRankSum=3.360;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:3141,321,0 chrVII 997667 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.81;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2982,298,0 chrVII 997840 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.424;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.971;QD=22.68;ReadPosRankSum=1.653;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3050,330,0 chrVII 998281 . C T 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=106;Dels=0.00;FS=2.975;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=1.033;QD=18.75;ReadPosRankSum=-0.639;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2020,161,0 chrVII 998284 . C T 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.738;QD=20.36;ReadPosRankSum=0.738;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2252,225,0 chrVII 998967 . T C 6291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=279;Dels=0.00;FS=5.356;HaplotypeScore=19.6511;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.508;QD=22.55;ReadPosRankSum=1.720;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6291,664,0 chrVII 999229 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=24.51;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3480,366,0 chrVII 999249 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.49;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2870,294,0 chrVII 999269 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=116;Dels=0.00;FS=5.593;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.574;QD=19.25;ReadPosRankSum=2.922;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2266,243,0 chrVII 999313 . A G 1804 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=20.04;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1837,192,0 chrVII 999317 . A G 1732 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=20.14;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1765,186,0 chrVII 999319 . G C 1850 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=21.26;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1883,192,0 chrVII 999344 . G T 2293 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=24.39;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2326,231,0 chrVII 999392 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.59;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1727,171,0 chrVII 999528 . T C 472 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=20.52;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,22:23:54:505,54,0 chrVII 999604 . A G 573 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.22;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:69:606,69,0 chrVII 999647 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.69;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:922,99,0 chrVII 999668 . G C 1137 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.44;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1170,120,0 chrVII 999737 . A C 1232 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.14;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1265,132,0 chrVII 1000197 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=209;Dels=0.00;FS=6.782;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.300;QD=22.94;ReadPosRankSum=2.379;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4795,522,0 chrVII 1000433 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=5.195;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.483;QD=17.79;ReadPosRankSum=1.692;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3147,327,0 chrVII 1000436 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.18;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3006,324,0 chrVII 1000855 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.77;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4174,418,0 chrVII 1001148 . T C 6224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=270;Dels=0.00;FS=3.059;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.135;QD=23.05;ReadPosRankSum=1.719;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6224,637,0 chrVII 1001397 . T A 6742.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=19.7496;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=3;QD=23.74;SB=-3.692e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:6742,679,0 chrVII 1002934 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.6316;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.10;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4774,519,0 chrVII 1003183 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=176;Dels=0.00;FS=9.334;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.420;QD=24.01;ReadPosRankSum=2.925;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4225,453,0 chrVII 1003444 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7750;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.53;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3459,349,0 chrVII 1003534 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3177,319,0 chrVII 1003675 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.87;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2801,277,0 chrVII 1004007 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=19.00;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2617,294,0 chrVII 1004008 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=19.43;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2636,294,0 chrVII 1004023 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=18.79;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2701,279,0 chrVII 1004042 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=18.48;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2362,252,0 chrVII 1004073 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.68;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2630,259,0 chrVII 1004074 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=17.68;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2455,258,0 chrVII 1004159 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.60;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2567,270,0 chrVII 1004169 . C A 2814 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=22.69;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2847,294,0 chrVII 1004183 . C G 2847 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5638;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=22.42;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2880,297,0 chrVII 1004505 . C T 101.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.47;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:134,15,0 chrVII 1004566 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.26;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1440,144,0 chrVII 1004584 . G C 1346 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.79;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1379,147,0 chrVII 1004599 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.02;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1817,177,0 chrVII 1004716 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4343;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.53;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2356,252,0 chrVII 1005100 . T C 5755.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.98;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5755,595,0 chrVII 1005304 . A T 5023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=206;Dels=0.00;FS=2.961;HaplotypeScore=26.0743;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.054;QD=24.38;ReadPosRankSum=2.413;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:5023,517,0 chrVII 1005412 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=188;Dels=0.00;FS=5.668;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.233;QD=23.14;ReadPosRankSum=2.952;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:4350,457,0 chrVII 1005543 . G C 5433.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.27;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5433,571,0 chrVII 1005829 . T C 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=207;Dels=0.00;FS=5.221;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.894;QD=23.46;ReadPosRankSum=3.392;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:4,201:207:99:4857,511,0 chrVII 1005907 . T G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.53;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3988,432,0 chrVII 1006061 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.6049;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.97;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3907,406,0 chrVII 1006143 . C A 2272 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=23.67;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2305,231,0 chrVII 1006156 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=24.35;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2298,231,0 chrVII 1006351 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.72;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3613,370,0 chrVII 1006715 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.07;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3507,349,0 chrVII 1007114 . G A 5062.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.44;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:5062,511,0 chrVII 1007125 . C T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.7485;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.83;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5065,514,0 chrVII 1007272 . A G 5583.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.98;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5583,574,0 chrVII 1007291 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.07;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5837,619,0 chrVII 1007547 . C A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.56;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4038,403,0 chrVII 1007580 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8622;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.80;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3314,354,0 chrVII 1007596 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.04;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3212,322,0 chrVII 1007680 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8005;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.50;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3120,319,0 chrVII 1008064 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.629;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.303;QD=24.17;ReadPosRankSum=1.701;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2788,285,0 chrVII 1008148 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.10;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2694,279,0 chrVII 1008259 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=130;Dels=0.00;FS=2.582;HaplotypeScore=8.8844;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.713;QD=25.77;ReadPosRankSum=2.946;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3350,348,0 chrVII 1008397 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.4828;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.71;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4695,490,0 chrVII 1008418 . T G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-0.990;QD=23.16;ReadPosRankSum=1.670;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3914,414,0 chrVII 1008427 . C T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2322;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.39;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4000,403,0 chrVII 1008469 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.66;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3018,301,0 chrVII 1008481 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;DP=153;Dels=0.00;FS=5.599;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.467;QD=17.39;ReadPosRankSum=2.415;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2694,252,0 chrVII 1008513 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.84;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3522,369,0 chrVII 1008592 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=141;Dels=0.00;FS=8.811;HaplotypeScore=14.7893;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=2.145;QD=23.79;ReadPosRankSum=2.414;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,135:141:99:3354,346,0 chrVII 1008710 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.700;QD=24.67;ReadPosRankSum=1.700;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2673,273,0 chrVII 1008781 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=118;Dels=0.00;FS=2.892;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.011;QD=22.32;ReadPosRankSum=2.407;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2667,282,0 chrVII 1008855 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=6.344;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.545;QD=22.21;ReadPosRankSum=2.385;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3353,343,0 chrVII 1008859 . T G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.51;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3376,354,0 chrVII 1009042 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=25.52;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3700,376,0 chrVII 1009086 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.69;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3255,334,0 chrVII 1009123 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.7395;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.71;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4102,433,0 chrVII 1009263 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.534;DP=167;Dels=0.00;FS=2.454;HaplotypeScore=9.8210;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.170;QD=22.01;ReadPosRankSum=2.170;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3675,364,0 chrVII 1009276 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=4.545;HaplotypeScore=8.0581;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.103;QD=21.10;ReadPosRankSum=1.711;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3566,384,0 chrVII 1009496 . G A 6440.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=24.58;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6440,640,0 chrVII 1009506 . A T 6445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=3.219;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.798;QD=25.18;ReadPosRankSum=1.719;SB=-3.610e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6445,640,0 chrVII 1011349 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6407;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.69;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4913,487,0 chrVII 1012595 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.4757;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.11;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4805,478,0 chrVII 1013000 . C G 5170.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.81;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5170,550,0 chrVII 1014663 . C G 2847 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6346;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.09;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2880,297,0 chrVII 1015581 . C G 3055 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.25;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3088,333,0 chrVII 1015706 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.668;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.137;QD=23.22;ReadPosRankSum=1.651;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3005,324,0 chrVII 1019203 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.614;QD=19.15;ReadPosRankSum=1.678;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2484,258,0 chrVII 1019210 . A G 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=130;Dels=0.00;FS=3.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.067;QD=18.70;ReadPosRankSum=2.392;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2464,252,0 chrVII 1019269 . T G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.352;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.092;QD=21.20;ReadPosRankSum=1.703;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2577,267,0 chrVII 1021855 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3686,364,0 chrVII 1026618 . G A 5267.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.04;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5267,532,0 chrVII 1027279 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.6063;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.08;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4941,508,0 chrVII 1027302 . A C 4641.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.17;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4641,481,0 chrVII 1027579 . T G 5814.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.50;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5814,598,0 chrVII 1027936 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.34;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4625,478,0 chrVII 1028091 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4321,433,0 chrVII 1030416 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.88;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2988,298,0 chrVII 1030970 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3831,382,0 chrVII 1032231 . C A 2785 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.04;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2818,282,0 chrVII 1033830 . G A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.67;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4416,445,0 chrVII 1034625 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2911,297,0 chrVII 1037791 . A T 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=4.130;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.682;QD=24.92;ReadPosRankSum=1.627;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3290,328,0 chrVII 1038689 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.661;QD=25.47;ReadPosRankSum=1.701;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2835,300,0 chrVII 1038960 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.10;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3022,304,0 chrVII 1039038 . T G 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=2.577;HaplotypeScore=9.1498;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.515;QD=24.40;ReadPosRankSum=2.916;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3230,342,0 chrVII 1039575 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2349,249,0 chrVII 1041124 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.23;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3256,322,0 chrVII 1041497 . A G 2814 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.12;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2847,294,0 chrVII 1041787 . G T 2595 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.25;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2628,262,0 chrVII 1041874 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=2.726;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.288;QD=24.35;ReadPosRankSum=2.390;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3052,318,0 chrVII 1041917 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.376;QD=24.43;ReadPosRankSum=2.409;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2989,309,0 chrVII 1042056 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.70;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2550,267,0 chrVII 1042694 . A G 5764.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.22;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5764,592,0 chrVII 1046308 . A G 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=223;Dels=0.00;FS=3.464;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.716;QD=24.21;ReadPosRankSum=1.701;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5398,559,0 chrVII 1046581 . G T 2486 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2519,264,0 chrVII 1047535 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3102,310,0 chrVII 1048158 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5598;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.05;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2438,255,0 chrVII 1048356 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.98;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3326,340,0 chrVII 1048402 . G A 236.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;DP=184;Dels=0.00;FS=19.217;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=41.94;MQ0=0;MQRankSum=-7.066;QD=1.28;ReadPosRankSum=-4.200;SB=-3.150e+02 GT:AD:DP:GQ:PL 0/1:113,71:184:99:266,0,2024 chrVII 1048405 . T C 401.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.463;DP=186;Dels=0.00;FS=17.031;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=41.79;MQ0=0;MQRankSum=-6.841;QD=2.16;ReadPosRankSum=-3.771;SB=-3.110e+02 GT:AD:DP:GQ:PL 0/1:109,76:186:99:431,0,1988 chrVII 1048409 . G A 427.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.433;DP=180;Dels=0.00;FS=15.583;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=0;MQRankSum=-5.170;QD=2.37;ReadPosRankSum=-2.175;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:103,77:180:99:457,0,1691 chrVII 1048419 . T C 603.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=175;Dels=0.00;FS=14.509;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=40.52;MQ0=0;MQRankSum=-4.833;QD=3.45;ReadPosRankSum=4.140;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:89,86:175:99:633,0,1302 chrVII 1048437 . G A 1316.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.243;DP=182;Dels=0.00;FS=7.682;HaplotypeScore=5.3425;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=0;MQRankSum=0.656;QD=7.23;ReadPosRankSum=8.464;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:64,118:182:99:1346,0,721 chrVII 1048509 . A T 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=2.625;HaplotypeScore=6.6073;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.630;QD=17.73;ReadPosRankSum=2.409;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2161,213,0 chrVII 1048815 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.346;QD=24.15;ReadPosRankSum=1.638;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2690,288,0 chrVII 1048990 . C T 5156.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.5060;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.17;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5156,520,0 chrVII 1049349 . T C 6311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=281;Dels=0.00;FS=9.148;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.364;QD=22.46;ReadPosRankSum=2.414;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:6311,687,0 chrVII 1049943 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.42;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3420,343,0 chrVII 1050080 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.99;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2398,237,0 chrVII 1050159 . A C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=99;Dels=0.00;FS=6.709;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.410;QD=15.39;ReadPosRankSum=2.400;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1557,162,0 chrVII 1050164 . A C 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.650;QD=17.40;ReadPosRankSum=1.660;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1703,180,0 chrVII 1050332 . G T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.15;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4262,442,0 chrVII 1051213 . G T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.4563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5225,520,0 chrVII 1051345 . C G 5415.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.54;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5415,568,0 chrVII 1051381 . C T 5373.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.4869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.57;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5373,529,0 chrVII 1051846 . C T 132.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.775;DP=40;Dels=0.00;FS=6.182;HaplotypeScore=33.2336;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;MQRankSum=-0.423;QD=3.30;ReadPosRankSum=-2.113;SB=-3.501e+02 GT:AD:DP:GQ:PL 1/1:8,32:40:18:165,18,0 chrVII 1051850 . G A 72.51 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=24.3744;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=2.69;SB=-1.625e+02 GT:AD:DP:GQ:PL 1/1:0,24:27:12:105,12,0 chrVII 1051991 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.4523;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.83;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2984,312,0 chrVII 1052105 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=8.4887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.49;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3524,352,0 chrVII 1052107 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.268;QD=19.99;ReadPosRankSum=0.041;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3378,343,0 chrVII 1052548 . A G 2787 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.23;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2820,288,0 chrVII 1052907 . T C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=3.375;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.313;QD=22.76;ReadPosRankSum=1.704;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2901,309,0 chrVII 1052940 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.39;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2746,274,0 chrVII 1053627 . C T 4914.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4914,481,0 chrVII 1053897 . T A 1974 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.56;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2007,210,0 chrVII 1054083 . A G 1879 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.40;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1912,195,0 chrVII 1054251 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.06;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3275,336,0 chrVII 1054260 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.85;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3386,354,0 chrVII 1054411 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.27;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4194,433,0 chrVII 1054476 . A T 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0273;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.392;QD=23.91;ReadPosRankSum=1.712;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4136,436,0 chrVII 1055001 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.61;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3519,352,0 chrVII 1055127 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=129;Dels=0.00;FS=7.450;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.353;QD=24.30;ReadPosRankSum=2.297;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3168,330,0 chrVII 1055697 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.31;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4150,447,0 chrVII 1055871 . A G 4067.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.95;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4067,421,0 chrVII 1056558 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.68;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2935,295,0 chrVII 1056872 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.44;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5181,544,0 chrVII 1057381 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=25.30;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1450,153,0 chrVII 1057542 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.38;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1801,189,0 chrVII 1057568 . T A 1617 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.00;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1650,165,0 chrVII 1057570 . C A 1680 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.54;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1713,168,0 chrVII 1057752 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=26.51;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3738,388,0 chrVII 1057780 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=27.88;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:4071,409,0 chrVII 1058359 . A G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.049;QD=24.66;ReadPosRankSum=1.667;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5278,547,0 chrVII 1058416 . A G 4945.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=18.3392;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4945,511,0 chrVII 1058901 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=25.54;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1974,204,0 chrVII 1058928 . C A 2017 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.92;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2050,216,0 chrVII 1058948 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.27;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2117,222,0 chrVII 1058963 . A G 2269 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.47;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2302,237,0 chrVII 1059089 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3158;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.65;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3358,346,0 chrVII 1059129 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=25.28;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3413,354,0 chrVII 1059189 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.42;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4570,454,0 chrVII 1059339 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.296;QD=25.28;ReadPosRankSum=1.670;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4221,433,0 chrVII 1059363 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.84;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4073,432,0 chrVII 1059407 . C A 5074.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=25.89;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5074,499,0 chrVII 1059513 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8682;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.29;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3727,390,0 chrVII 1059621 . G C 3177 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.91;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3210,330,0 chrVII 1059629 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.80;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2976,301,0 chrVII 1059977 . T G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=159;Dels=0.00;FS=2.891;HaplotypeScore=11.3775;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.055;QD=25.00;ReadPosRankSum=2.387;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3975,406,0 chrVII 1060055 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3616,361,0 chrVII 1060130 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=24.16;ReadPosRankSum=1.683;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3406,352,0 chrVII 1060260 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.42;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2807,282,0 chrVII 1060496 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2388,252,0 chrVII 1060760 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.02;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3118,307,0 chrVII 1061003 . T C 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=196;Dels=0.00;FS=5.716;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.724;QD=25.84;ReadPosRankSum=2.943;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:5065,526,0 chrVII 1061571 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.346;QD=23.03;ReadPosRankSum=1.706;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3142,324,0 chrVII 1061633 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.08;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3660,384,0 chrVII 1061731 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.42;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3443,343,0 chrVII 1062031 . T C 6476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=278;Dels=0.00;FS=10.011;HaplotypeScore=22.0305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.757;QD=23.29;ReadPosRankSum=2.946;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:3,274:278:99:6476,685,0 chrVII 1062188 . C G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4363,460,0 chrVII 1062599 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.3186;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.372;QD=24.13;ReadPosRankSum=1.712;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4199,453,0 chrVII 1062869 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=154;Dels=0.00;FS=3.339;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.365;QD=23.29;ReadPosRankSum=1.640;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3587,384,0 chrVII 1062938 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=175;Dels=0.00;FS=5.972;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.006;QD=21.74;ReadPosRankSum=2.948;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3804,411,0 chrVII 1063067 . G T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8768;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.88;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3458,366,0 chrVII 1063172 . A C 2333 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.82;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2366,243,0 chrVII 1063193 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.64;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2078,213,0 chrVII 1063293 . G A 56.97 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=1.42;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:89,9,0 chrVII 1063349 . T C 549 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=18.30;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:582,60,0 chrVII 1063368 . A G 421 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.14;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:454,48,0 chrVII 1063378 . C T 365 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=21.47;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:398,39,0 chrVII 1063387 . T C 312 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.50;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:36:345,36,0 chrVII 1063532 . T A 398 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=23.41;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:42:431,42,0 chrVII 1063533 . G A 388 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=24.25;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:421,42,0 chrVII 1063565 . C T 174.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:21:207,21,0 chrVII 1063622 . G C 185.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.56;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:218,21,0 chrVII 1063629 . T C 233.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.42;SB=-3.102e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:266,27,0 chrVII 1063668 . A C 610 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.33;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:643,66,0 chrVII 1063699 . C T 493 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:526,54,0 chrVII 1063846 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.651;QD=26.87;ReadPosRankSum=1.677;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3359,348,0 chrVII 1064969 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.04;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3270,345,0 chrVII 1065002 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.9315;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.972;QD=23.29;ReadPosRankSum=1.620;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3656,384,0 chrVII 1065116 . A C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3987,421,0 chrVII 1065185 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.99;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3898,403,0 chrVII 1065367 . C A 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.83;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1803,183,0 chrVII 1065591 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=26.55;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2794,288,0 chrVII 1065722 . C T 5207.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.30;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5207,547,0 chrVII 1065775 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.2125;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.59;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4230,427,0 chrVII 1065808 . A T 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.069;QD=25.13;ReadPosRankSum=1.698;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:5077,511,0 chrVII 1065857 . A G 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=3.030;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.631;QD=25.88;ReadPosRankSum=2.427;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5589,580,0 chrVII 1065874 . A G 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=215;Dels=0.00;FS=6.079;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.640;QD=24.96;ReadPosRankSum=2.967;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:5367,562,0 chrVII 1065897 . C A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=25.10;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4568,457,0 chrVII 1065929 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=3.367;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.577;QD=22.35;ReadPosRankSum=1.690;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3710,399,0 chrVII 1066008 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=24.21;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4478,466,0 chrVII 1066011 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=22.97;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4341,453,0 chrVII 1066023 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=22.22;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3689,390,0 chrVII 1066025 . G A 3893.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=23.31;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3893,388,0 chrVII 1066097 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.43;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3561,358,0 chrVII 1066166 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.76;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3961,409,0 chrVII 1066178 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.218;QD=24.11;ReadPosRankSum=1.710;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3737,382,0 chrVII 1066252 . C G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=25.30;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3246,336,0 chrVII 1066308 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.15;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3987,418,0 chrVII 1066316 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.44;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4106,409,0 chrVII 1066557 . A T 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.430;QD=24.96;ReadPosRankSum=1.709;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3719,393,0 chrVII 1066596 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.98;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2815,280,0 chrVII 1066693 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=122;Dels=0.00;FS=2.596;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.099;QD=23.84;ReadPosRankSum=2.860;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2942,303,0 chrVII 1066820 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=61.88;MQ0=0;QD=24.63;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1831,183,0 chrVII 1067117 . A T 46.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.654;DP=98;Dels=0.00;FS=3.198;HaplotypeScore=81.7710;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=0;MQRankSum=0.861;QD=0.47;ReadPosRankSum=-4.158;SB=-4.634e+01 GT:AD:DP:GQ:PL 0/1:89,9:98:8:76,0,8 chrVII 1067171 . C A 2759 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.99;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2792,294,0 chrVII 1067738 . G T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0744;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.28;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4258,424,0 chrVII 1067897 . G A 5554.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.84;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5554,586,0 chrVII 1067985 . T A 6675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.8566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.777;QD=26.18;ReadPosRankSum=1.705;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:6675,664,0 chrVII 1068149 . G A 6450.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.71;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6450,637,0 chrVII 1068305 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.1904;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.204;QD=24.38;ReadPosRankSum=2.372;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5437,556,0 chrVII 1068524 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2829;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=1.634;QD=22.07;ReadPosRankSum=1.716;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4656,487,0 chrVII 1068533 . G A 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=0.572;QD=20.48;ReadPosRankSum=-0.620;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4404,468,0 chrVII 1068569 . T C 3332.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.1667;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=8;MQRankSum=-0.723;QD=13.88;ReadPosRankSum=1.717;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:3332,369,0 chrVII 1068602 . T C 2760 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.004;DP=226;Dels=0.00;FS=9.818;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=8;MQRankSum=1.281;QD=12.21;ReadPosRankSum=0.394;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:10,215:226:99:2793,190,0 chrVII 1068608 . A G 3324.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=230;Dels=0.00;FS=3.004;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=8;MQRankSum=-1.683;QD=14.45;ReadPosRankSum=2.405;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:3324,372,0 chrVII 1068674 . G A 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=198;Dels=0.00;FS=36.296;HaplotypeScore=12.9129;MLEAC=1;MLEAF=0.500;MQ=49.31;MQ0=0;MQRankSum=-5.846;QD=0.71;ReadPosRankSum=4.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,28:198:99:171,0,3315 chrVII 1068680 . A G 3373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=195;Dels=0.00;FS=50.061;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=49.04;MQ0=0;MQRankSum=6.602;QD=17.30;ReadPosRankSum=-5.347;SB=-1.267e+03 GT:AD:DP:GQ:PL 0/1:25,169:195:99:3373,0,149 chrVII 1068690 . C T 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;DP=194;Dels=0.00;FS=47.466;HaplotypeScore=10.2416;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=0;MQRankSum=-6.799;QD=0.69;ReadPosRankSum=2.044;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,26:194:99:163,0,3473 chrVII 1068692 . A G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.378;DP=197;Dels=0.00;FS=47.636;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=48.41;MQ0=0;MQRankSum=-7.134;QD=0.55;ReadPosRankSum=1.661;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,25:197:99:138,0,3566 chrVII 1068806 . G A 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;DP=110;Dels=0.00;FS=11.793;HaplotypeScore=4.9387;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=12;MQRankSum=-1.490;QD=0.41;ReadPosRankSum=0.701;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,15:110:75:75,0,1303 chrVII 1068812 . T C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.431;DP=107;Dels=0.00;FS=9.286;HaplotypeScore=4.2048;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=12;MQRankSum=-1.029;QD=0.46;ReadPosRankSum=3.316;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,15:107:79:79,0,1114 chrVII 1068831 . G A 456.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;DP=92;Dels=0.00;FS=4.970;HaplotypeScore=10.9645;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=12;MQRankSum=1.531;QD=4.96;ReadPosRankSum=-4.811;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:21,71:92:99:486,0,168 chrVII 1068833 . A G 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DP=87;Dels=0.00;FS=2.626;HaplotypeScore=10.1758;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=12;MQRankSum=0.155;QD=1.66;ReadPosRankSum=5.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,21:87:99:174,0,428 chrVII 1068842 . T C 538 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2324;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=8;QD=7.80;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,68:69:60:571,60,0 chrVII 1068856 . G A 140.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;QD=7.79;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:173,18,0 chrVII 1068866 . A G 80.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;QD=4.47;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:113,12,0 chrVII 1068869 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;MQRankSum=-1.032;QD=1.05;ReadPosRankSum=2.143;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:2,14:16:6:48,6,0 chrVII 1076432 . A G 267 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=2;QD=10.27;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:33:300,33,0 chrVII 1076528 . T C 184.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=15;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=7;MQRankSum=1.589;QD=12.28;ReadPosRankSum=1.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,13:15:18:217,18,0 chrVII 1076533 . C T 230 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=9;QD=10.95;SB=-4.700e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:30:263,30,0 chrVII 1076562 . C G 434.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=60;Dels=0.00;FS=1.072;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=9;MQRankSum=-0.594;QD=7.23;ReadPosRankSum=1.686;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:32,28:60:99:464,0,539 chrVII 1080289 . A C 1968 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=35;QD=10.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,178:196:99:2001,225,0 chrVII 1080362 . C T 774 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.36;MQ0=168;MQRankSum=1.641;QD=3.17;ReadPosRankSum=-0.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:112,132:244:84:807,84,0 chrVII 1080407 . T G 1217 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;DP=230;Dels=0.00;FS=4.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.00;MQ0=155;MQRankSum=1.547;QD=5.29;ReadPosRankSum=-0.393;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:77,153:230:99:1250,138,0 chrVII 1080459 . T A 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;DP=180;Dels=0.00;FS=47.706;HaplotypeScore=7.7364;MLEAC=1;MLEAF=0.500;MQ=20.61;MQ0=15;MQRankSum=-9.293;QD=0.24;ReadPosRankSum=0.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,49:180:74:74,0,1778 chrVII 1080460 . C T 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.695;DP=181;Dels=0.00;FS=48.028;HaplotypeScore=8.5250;MLEAC=1;MLEAF=0.500;MQ=20.74;MQ0=15;MQRankSum=-9.307;QD=0.23;ReadPosRankSum=1.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,48:181:71:71,0,1765 chrVII 1080461 . T G 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820;DP=190;Dels=0.00;FS=54.025;HaplotypeScore=11.3657;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=14;MQRankSum=-9.051;QD=0.22;ReadPosRankSum=2.530;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,46:190:71:71,0,1794 chrVII 1080590 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=5.55;MQ0=101;MQRankSum=1.107;QD=0.16;ReadPosRankSum=-1.423;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:78,34:112:6:49,6,0 chrVII 1080626 . C T 191.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;DP=41;Dels=0.00;FS=11.761;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=25;MQRankSum=-1.736;QD=4.66;ReadPosRankSum=1.504;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:18,22:41:27:224,27,0 chrVII 1080758 . C G 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=3;QD=5.35;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:58,6,0 chrVII 1080801 . C T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=12.36;MQ0=26;MQRankSum=-1.231;QD=0.49;ReadPosRankSum=0.358;SB=0.079 GT:AD:DP:GQ:PL 0/1:20,11:31:37:45,0,37 chrVII 1080880 . C T 60.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.40;MQ0=20;MQRankSum=0.358;QD=2.40;ReadPosRankSum=-0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,12:25:19:90,0,19 chrVII 1081036 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=7.9248;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=22;MQRankSum=1.545;QD=0.35;ReadPosRankSum=0.271;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:16,19:35:42:42,0,64 chrVII 1081252 . C G 160.06 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=0;QD=3.20;SB=-4.807e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:21:193,21,0 chrVII 1081257 . C T 187.03 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;QD=3.53;SB=-4.804e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:24:220,24,0 chrVII 1081262 . T A 284 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=0;MQRankSum=0.508;QD=5.07;ReadPosRankSum=2.362;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:2,54:56:33:317,33,0 chrVII 1081320 . C T 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.736;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=18.62;MQ0=24;MQRankSum=1.812;QD=3.94;ReadPosRankSum=2.096;SB=-2.598e+01 GT:AD:DP:GQ:PL 0/1:26,24:50:47:227,0,47 chrVII 1081363 . G A 133.13 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.97;MQ0=33;QD=3.33;SB=-2.888e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:18:166,18,0 chrVII 1081450 . G A 2326 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DP=109;Dels=0.00;FS=2.402;HaplotypeScore=4.6022;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=16;MQRankSum=1.598;QD=21.34;ReadPosRankSum=2.925;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:7,102:109:99:2359,208,0 chrVII 1081451 . G A 869.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3908;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=16;MQRankSum=-2.866;QD=7.97;ReadPosRankSum=1.466;SB=-3.940e+02 GT:AD:DP:GQ:PL 0/1:61,48:109:99:899,0,1132 chrVII 1081530 . T A 132.13 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.45;MQ0=47;QD=2.20;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:18:165,18,0 chrVII 1081617 . C T 208.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.110;DP=79;Dels=0.00;FS=18.138;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=20.17;MQ0=32;MQRankSum=-2.292;QD=2.63;ReadPosRankSum=-0.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,40:79:99:238,0,414 chrVII 1081629 . A G 628 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=28;MQRankSum=-0.272;QD=9.10;ReadPosRankSum=2.270;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,67:69:72:661,72,0 chrVII 1081638 . T C 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;DP=60;Dels=0.00;FS=8.858;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=26;MQRankSum=-2.744;QD=2.85;ReadPosRankSum=1.226;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,31:60:99:201,0,219 chrVII 1082353 . G A 334 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.532;DP=47;Dels=0.00;FS=89.675;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=13;MQRankSum=4.501;QD=7.11;ReadPosRankSum=-4.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:32,15:47:39:367,39,0 chrVII 1082375 . G T 386 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=49;Dels=0.00;FS=95.794;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=13;MQRankSum=4.689;QD=7.88;ReadPosRankSum=1.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:33,16:49:42:419,42,0 chrVII 1082380 . G A 382 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DP=49;Dels=0.00;FS=95.794;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=13;MQRankSum=4.754;QD=7.80;ReadPosRankSum=3.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:33,16:49:42:415,42,0 chrVII 1082508 . C T 171.03 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=5;QD=4.62;SB=-8.404e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:24:204,24,0 chrVII 1082514 . C T 174.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=5;QD=4.14;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:24:207,24,0 chrVII 1082522 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;DP=52;Dels=0.00;FS=57.194;HaplotypeScore=13.8688;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=5;MQRankSum=-1.469;QD=0.60;ReadPosRankSum=0.195;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:13,39:52:61:61,0,152 chrVII 1082523 . C A 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=52;Dels=0.00;FS=57.194;HaplotypeScore=13.8688;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=5;MQRankSum=1.833;QD=2.48;ReadPosRankSum=-0.247;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:39,13:52:85:159,0,85 chrVII 1082587 . A G 338 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=9.14;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:39:371,39,0 chrVII 1082656 . G A 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=10;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.78;MQ0=2;MQRankSum=0.747;QD=4.10;ReadPosRankSum=-0.747;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:3,7:10:9:73,9,0 chrVII 1082681 . C A 131.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=3;QD=6.24;SB=-3.111e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:18:164,18,0 chrVII 1082775 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=89;Dels=0.00;FS=8.875;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=-0.602;QD=15.90;ReadPosRankSum=2.394;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1448,150,0 chrVII 1082819 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=2;QD=23.18;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1192,123,0 chrVII 1082858 . G T 682 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=3;QD=18.94;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:72:715,72,0 chrVII 1082895 . C A 246.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=1;QD=8.79;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:27:279,27,0 chrVII 1082905 . T C 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=0;QD=5.59;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:223,24,0 chrVII 1082906 . T A 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=0;QD=5.53;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:221,24,0 chrVII 1082907 . A G 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=0;QD=5.53;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:221,24,0 chrVII 1082918 . A G 281 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=7.03;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:314,33,0 chrVII 1082922 . C T 270 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=6.75;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:303,33,0 chrVII 1082938 . G T 425 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;QD=8.67;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:48:458,48,0 chrVII 1082939 . A G 406 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;QD=8.29;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:48:439,48,0 chrVII 1082972 . G A 414 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=9.20;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:45:447,45,0 chrVII 1082991 . G A 480 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=13.33;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:51:513,51,0 chrVII 1083002 . G T 518 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=15.24;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:54:551,54,0 chrVII 1083007 . A G 485 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=14.70;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:518,54,0 chrVII 1083057 . A G 196.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.53;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:229,24,0 chrVII 1083060 . T C 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.25;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:213,24,0 chrVII 1083061 . T G 189.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.81;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:222,24,0 chrVII 1083066 . A G 106.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.238;QD=6.64;ReadPosRankSum=2.143;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:2,14:16:15:139,15,0 chrVII 1083804 . C T 12.29 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.737;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=11.7085;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=4;MQRankSum=-0.467;QD=0.41;ReadPosRankSum=-0.363;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:15,15:30:20:42,0,20 chrVII 1083846 . A C 67.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.8676;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=2;MQRankSum=-1.739;QD=2.17;ReadPosRankSum=0.980;SB=-2.075e-01 GT:AD:DP:GQ:PL 0/1:4,27:31:10:97,0,10 chrVII 1083875 . A C 110.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=0;QD=5.80;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:143,18,0 chrVII 1083888 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.20;MQ0=0;QD=3.66;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrVII 1083946 . G T 336.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;DP=24;Dels=0.00;FS=10.447;HaplotypeScore=4.0578;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=3;MQRankSum=1.658;QD=14.00;ReadPosRankSum=-0.653;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:3,21:24:19:366,0,19 chrVII 1083968 . C G 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;DP=41;Dels=0.00;FS=18.553;HaplotypeScore=3.9037;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=3;MQRankSum=-2.210;QD=4.07;ReadPosRankSum=-3.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,19:41:99:197,0,322 chrVII 1083976 . G A 156.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.691;DP=44;Dels=0.00;FS=9.438;HaplotypeScore=3.9037;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=3;MQRankSum=-2.220;QD=3.55;ReadPosRankSum=-4.926;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:26,18:44:99:186,0,359 chrVII 1083992 . T C 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7802;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=4;MQRankSum=-2.332;QD=5.63;ReadPosRankSum=-1.032;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:27,25:52:99:323,0,368 chrVII 1084008 . G A 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.050;DP=69;Dels=0.03;FS=4.121;HaplotypeScore=20.0260;MLEAC=1;MLEAF=0.500;MQ=18.84;MQ0=12;MQRankSum=2.248;QD=3.75;ReadPosRankSum=-2.493;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:46,21:67:99:289,0,426 chrVII 1084034 . G A 533 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=16.82;MQ0=11;MQRankSum=1.007;QD=9.87;ReadPosRankSum=1.571;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:75:566,75,0 chrVII 1084094 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=52;Dels=0.00;FS=41.580;HaplotypeScore=11.1156;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=7;MQRankSum=1.260;QD=0.52;ReadPosRankSum=1.192;SB=-6.563e-03 GT:AD:DP:GQ:PL 0/1:30,22:52:47:57,0,47 chrVII 1084103 . A G 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=10.7235;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=0;QD=3.70;SB=-9.207e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:21:181,21,0 chrVII 1084110 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;DP=41;Dels=0.00;FS=41.265;HaplotypeScore=17.6922;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=0;MQRankSum=0.378;QD=0.76;ReadPosRankSum=-0.538;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:36,5:41:61:61,0,99 chrVII 1084111 . A G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=42;Dels=0.00;FS=38.294;HaplotypeScore=36.0559;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=0;MQRankSum=0.388;QD=0.71;ReadPosRankSum=-0.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,5:42:60:60,0,120 chrVII 1084114 . T G 196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=21.3541;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=0;QD=4.78;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:229,27,0 chrVII 1084116 . G A 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;DP=41;Dels=0.00;FS=37.743;HaplotypeScore=21.3541;MLEAC=1;MLEAF=0.500;MQ=21.99;MQ0=0;MQRankSum=0.139;QD=0.78;ReadPosRankSum=0.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,5:41:62:62,0,115 chrVII 1084124 . C G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;DP=41;Dels=0.00;FS=39.882;HaplotypeScore=41.0309;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=0;MQRankSum=0.535;QD=1.37;ReadPosRankSum=0.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,6:41:86:86,0,135 chrVII 1084132 . T C 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=36;Dels=0.00;FS=62.334;HaplotypeScore=31.4678;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=0;MQRankSum=1.571;QD=2.14;ReadPosRankSum=-0.438;SB=0.048 GT:AD:DP:GQ:PL 0/1:27,9:36:99:107,0,103 chrVII 1084133 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=36;Dels=0.00;FS=3.576;HaplotypeScore=31.4678;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=0;MQRankSum=-1.271;QD=0.86;ReadPosRankSum=-0.859;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:25,11:36:61:61,0,163 chrVII 1084141 . A G 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=31;Dels=0.00;FS=32.024;HaplotypeScore=29.5330;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=0.825;QD=2.06;ReadPosRankSum=-0.125;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:25:94,0,25 chrVII 1084150 . G T 70.55 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=20.6505;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;QD=2.14;SB=-1.336e+02 GT:AD:DP:GQ:PL 1/1:0,21:33:12:103,12,0 chrVII 1084151 . G C 66.55 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.075;DP=33;Dels=0.00;FS=9.103;HaplotypeScore=29.5194;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;MQRankSum=0.506;QD=2.02;ReadPosRankSum=0.584;SB=9.45 GT:AD:DP:GQ:PL 1/1:15,6:33:12:99,12,0 chrVII 1084152 . C G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=32.5048;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=0;QD=2.67;SB=-3.333e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:15:121,15,0 chrVII 1084160 . G A 72.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.304;DP=30;Dels=0.00;FS=34.561;HaplotypeScore=58.7969;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=0;MQRankSum=-1.946;QD=2.40;ReadPosRankSum=-1.222;SB=-9.402e+01 GT:AD:DP:GQ:PL 0/1:9,21:30:99:102,0,110 chrVII 1084161 . G T 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=55.8075;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=0;MQRankSum=-2.152;QD=0.93;ReadPosRankSum=1.162;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:19,11:30:58:58,0,149 chrVII 1084162 . T G 71.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DP=30;Dels=0.00;FS=34.561;HaplotypeScore=49.8450;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=0;MQRankSum=-1.856;QD=2.37;ReadPosRankSum=-1.177;SB=-9.402e+01 GT:AD:DP:GQ:PL 0/1:9,21:30:99:101,0,108 chrVII 1084180 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=22.2032;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=0;MQRankSum=-2.297;QD=1.91;ReadPosRankSum=0.740;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:6,15:21:70:70,0,85 chrVII 1084184 . G A 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;DP=21;Dels=0.00;FS=2.740;HaplotypeScore=9.6720;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=0;MQRankSum=2.931;QD=2.86;ReadPosRankSum=0.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,5:21:88:90,0,88 chrVII 1084191 . A G 208.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;QD=11.56;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:241,27,0 chrVII 1084194 . A T 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=0;MQRankSum=2.169;QD=3.56;ReadPosRankSum=-0.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,5:18:94:94,0,96 chrVII 1084199 . C T 193.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.53;MQ0=0;QD=11.35;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:226,27,0 chrVII 1084232 . A G 119.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=10.1608;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=0;QD=7.94;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,14:15:18:152,18,0 chrVII 1084297 . T G 1175 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;QD=19.58;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1208,144,0 chrVII 1084298 . T A 1155 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;QD=19.25;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1188,141,0 chrVII 1084303 . G A 1149 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;QD=19.15;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1182,144,0 chrVII 1084329 . G C 824 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=16.48;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:857,108,0 chrVIII 138 . A G 152.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=3;QD=13.82;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:21:185,21,0 chrVIII 267 . G A 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=203;Dels=0.00;FS=58.114;HaplotypeScore=4.9055;MLEAC=1;MLEAF=0.500;MQ=16.39;MQ0=18;MQRankSum=4.477;QD=0.74;ReadPosRankSum=1.414;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,9:203:99:180,0,238 chrVIII 1495 . G A 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DP=83;Dels=0.00;FS=34.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.68;MQ0=57;MQRankSum=3.091;QD=0.66;ReadPosRankSum=0.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:78,5:83:12:87,12,0 chrVIII 1508 . A T 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.841;DP=85;Dels=0.00;FS=39.130;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.32;MQ0=52;MQRankSum=3.172;QD=0.64;ReadPosRankSum=0.965;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:81,4:85:12:87,12,0 chrVIII 1552 . C T 119.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=51;Dels=0.00;FS=36.451;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=11.66;MQ0=2;MQRankSum=4.186;QD=2.33;ReadPosRankSum=1.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:44,7:51:21:152,21,0 chrVIII 1567 . C T 119.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=58;Dels=0.00;FS=31.841;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=11.61;MQ0=1;MQRankSum=3.848;QD=2.05;ReadPosRankSum=-0.057;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:50,8:58:21:152,21,0 chrVIII 1576 . G A 119.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.365;DP=58;Dels=0.00;FS=24.301;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=11.34;MQ0=4;MQRankSum=4.223;QD=2.05;ReadPosRankSum=-0.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:51,7:58:21:152,21,0 chrVIII 1585 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=45;Dels=0.00;FS=5.905;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=10.25;MQ0=8;MQRankSum=2.810;QD=0.73;ReadPosRankSum=-0.306;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:41,3:45:9:65,9,0 chrVIII 1595 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DP=50;Dels=0.00;FS=2.538;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=8.67;MQ0=21;MQRankSum=2.757;QD=0.66;ReadPosRankSum=-2.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:47,3:50:9:65,9,0 chrVIII 1681 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=59;Dels=0.00;FS=28.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.84;MQ0=47;MQRankSum=2.793;QD=0.20;ReadPosRankSum=-2.793;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:53,6:59:6:43,6,0 chrVIII 1682 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=58;Dels=0.00;FS=28.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.89;MQ0=46;MQRankSum=2.793;QD=0.21;ReadPosRankSum=-2.793;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:53,5:58:6:43,6,0 chrVIII 1686 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788;DP=53;Dels=0.00;FS=28.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.16;MQ0=41;MQRankSum=2.793;QD=0.23;ReadPosRankSum=-1.461;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:48,5:53:6:43,6,0 chrVIII 1693 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.533;DP=45;Dels=0.00;FS=28.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.69;MQ0=33;MQRankSum=2.793;QD=0.27;ReadPosRankSum=2.141;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:39,6:45:6:43,6,0 chrVIII 1717 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=27;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.83;MQ0=19;MQRankSum=0.747;QD=1.22;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:20,7:27:9:65,9,0 chrVIII 1718 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=27;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.83;MQ0=19;MQRankSum=0.747;QD=1.22;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:17,10:27:9:65,9,0 chrVIII 1722 . A C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=32;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.11;MQ0=24;MQRankSum=0.747;QD=1.03;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:25,7:32:9:65,9,0 chrVIII 1732 . T A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=40;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=32;MQRankSum=0.747;QD=0.82;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:33,7:40:9:65,9,0 chrVIII 1733 . T G 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=40;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=32;MQRankSum=0.747;QD=0.82;ReadPosRankSum=-0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:33,7:40:9:65,9,0 chrVIII 1753 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=43;Dels=0.00;FS=3.680;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=5.70;MQ0=36;MQRankSum=1.754;QD=0.28;ReadPosRankSum=-0.550;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:39,4:43:6:43,6,0 chrVIII 1758 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=5.14;MQ0=36;MQRankSum=1.537;QD=0.29;ReadPosRankSum=0.406;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:39,3:42:6:43,6,0 chrVIII 2197 . T C 186.01 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.86;MQ0=35;QD=2.70;SB=-1.368e+02 GT:AD:DP:GQ:PL 1/1:31,38:69:27:219,27,0 chrVIII 2242 . C T 56.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=14;Dels=0.00;FS=21.553;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=0;MQRankSum=-2.700;QD=4.04;ReadPosRankSum=2.083;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,9:14:12:89,12,0 chrVIII 2243 . T C 56.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=19.956;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=0;MQRankSum=-2.180;QD=4.71;ReadPosRankSum=2.637;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:4,8:12:12:89,12,0 chrVIII 2251 . C A 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=0;QD=14.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:91,12,0 chrVIII 2362 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.67;MQ0=72;QD=0.14;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:69,17:88:6:43,6,0 chrVIII 2367 . C G 32.97 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.98;MQ0=72;QD=0.37;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:71,18:89:9:65,9,0 chrVIII 2381 . G C 32.97 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.82;MQ0=78;QD=0.35;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:75,19:95:9:65,9,0 chrVIII 2409 . T C 60.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;DP=84;Dels=0.00;FS=78.316;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=7.88;MQ0=55;MQRankSum=-1.951;QD=0.72;ReadPosRankSum=2.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:70,13:84:12:93,12,0 chrVIII 2412 . T C 61.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=80;Dels=0.00;FS=8.048;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=45;MQRankSum=-1.532;QD=0.77;ReadPosRankSum=3.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,75:80:12:94,12,0 chrVIII 2418 . G T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.020;DP=86;Dels=0.00;FS=84.052;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=9.36;MQ0=50;MQRankSum=-1.430;QD=0.47;ReadPosRankSum=1.042;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:76,10:86:54:70,0,54 chrVIII 5292 . C A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.571;DP=31;Dels=0.00;FS=52.252;HaplotypeScore=8.7182;MLEAC=1;MLEAF=0.500;MQ=14.57;MQ0=11;MQRankSum=-2.279;QD=0.55;ReadPosRankSum=0.684;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:9,22:31:47:47,0,63 chrVIII 5293 . G T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;DP=31;Dels=0.00;FS=52.252;HaplotypeScore=8.7182;MLEAC=1;MLEAF=0.500;MQ=14.57;MQ0=11;MQRankSum=2.203;QD=1.06;ReadPosRankSum=-0.760;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:22,9:31:47:63,0,47 chrVIII 5298 . C T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DP=37;Dels=0.00;FS=15.762;HaplotypeScore=5.1655;MLEAC=1;MLEAF=0.500;MQ=14.81;MQ0=10;MQRankSum=1.546;QD=0.46;ReadPosRankSum=0.321;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:29,8:37:47:47,0,63 chrVIII 5343 . A G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DP=72;Dels=0.00;FS=46.465;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=17.80;MQ0=4;MQRankSum=2.939;QD=1.85;ReadPosRankSum=2.133;SB=0.062 GT:AD:DP:GQ:PL 0/1:33,39:72:99:163,0,101 chrVIII 5355 . T A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;DP=77;Dels=0.00;FS=46.235;HaplotypeScore=13.9190;MLEAC=1;MLEAF=0.500;MQ=17.63;MQ0=4;MQRankSum=2.773;QD=1.75;ReadPosRankSum=3.331;SB=0.062 GT:AD:DP:GQ:PL 0/1:35,42:77:99:165,0,101 chrVIII 5379 . T A 129.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.86;MQ0=2;MQRankSum=-0.804;QD=2.23;ReadPosRankSum=1.176;SB=-4.110e+00 GT:AD:DP:GQ:PL 1/1:2,56:58:1:158,1,0 chrVIII 5385 . T A 128.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=2;MQRankSum=-0.770;QD=2.29;ReadPosRankSum=1.347;SB=-4.110e+00 GT:AD:DP:GQ:PL 1/1:1,55:56:1:157,1,0 chrVIII 5477 . C T 884 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8428;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=23;QD=9.82;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:96:917,96,0 chrVIII 5489 . G A 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;DP=129;Dels=0.00;FS=3.240;HaplotypeScore=9.4992;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=26;MQRankSum=-2.925;QD=1.19;ReadPosRankSum=-0.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,41:129:99:183,0,1252 chrVIII 5556 . C T 2328 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=8;QD=12.19;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2361,243,0 chrVIII 5600 . T C 628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.995;DP=128;Dels=0.00;FS=5.663;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=30.46;MQ0=0;MQRankSum=0.124;QD=4.91;ReadPosRankSum=-2.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,75:128:99:658,0,967 chrVIII 5601 . A G 594.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.135;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=0;MQRankSum=1.059;QD=4.68;ReadPosRankSum=-1.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,73:127:99:624,0,885 chrVIII 5614 . A G 717.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=0;MQRankSum=0.747;QD=4.91;ReadPosRankSum=-1.188;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:61,84:146:99:747,0,1043 chrVIII 5619 . C T 773.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.073;DP=152;Dels=0.00;FS=3.858;HaplotypeScore=6.3992;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=-0.041;QD=5.09;ReadPosRankSum=0.451;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:69,83:152:99:803,0,1134 chrVIII 5625 . T C 903.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;DP=162;Dels=0.00;FS=9.297;HaplotypeScore=6.5046;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=0;MQRankSum=-1.084;QD=5.57;ReadPosRankSum=0.413;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:72,90:162:99:933,0,1291 chrVIII 5631 . A G 926.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.891;DP=180;Dels=0.00;FS=21.460;HaplotypeScore=6.5594;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=0.779;QD=5.14;ReadPosRankSum=0.624;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:79,99:180:99:956,0,1284 chrVIII 5635 . T C 1172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;DP=193;Dels=0.00;FS=31.369;HaplotypeScore=7.9375;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-0.843;QD=6.07;ReadPosRankSum=1.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,77:193:99:1202,0,1077 chrVIII 5642 . T C 1223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DP=206;Dels=0.00;FS=54.252;HaplotypeScore=4.8834;MLEAC=1;MLEAF=0.500;MQ=31.13;MQ0=6;MQRankSum=0.400;QD=5.94;ReadPosRankSum=-0.768;SB=-9.710e+02 GT:AD:DP:GQ:PL 0/1:78,128:206:99:1253,0,1286 chrVIII 5645 . T C 1242.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383;DP=214;Dels=0.00;FS=59.158;HaplotypeScore=7.1947;MLEAC=1;MLEAF=0.500;MQ=31.67;MQ0=6;MQRankSum=0.236;QD=5.80;ReadPosRankSum=-0.631;SB=-9.960e+02 GT:AD:DP:GQ:PL 0/1:80,134:214:99:1272,0,1253 chrVIII 5724 . C T 1860 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=16;QD=13.29;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:1893,189,0 chrVIII 5887 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;DP=43;Dels=0.00;FS=64.088;HaplotypeScore=17.6729;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=0;MQRankSum=0.552;QD=0.70;ReadPosRankSum=-3.687;SB=0.205 GT:AD:DP:GQ:PL 0/1:34,9:43:45:60,0,45 chrVIII 5896 . T G 147.13 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;QD=4.33;SB=-1.731e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:18:180,18,0 chrVIII 5898 . T G 138.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=37;Dels=0.00;FS=12.430;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=1;MQRankSum=-0.656;QD=3.73;ReadPosRankSum=2.314;SB=-1.801e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:18:171,18,0 chrVIII 5942 . G A 1595.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.613;DP=116;Dels=0.00;FS=136.425;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=2;MQRankSum=6.440;QD=13.75;ReadPosRankSum=2.248;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:24,91:116:99:1625,0,203 chrVIII 6038 . A G 775 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=117;MQRankSum=-0.057;QD=4.73;ReadPosRankSum=3.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,139:164:87:808,87,0 chrVIII 6047 . A G 478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.23;MQ0=132;MQRankSum=-1.613;QD=2.97;ReadPosRankSum=3.131;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:39,115:161:54:511,54,0 chrVIII 6084 . C G 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=10.65;MQ0=121;MQRankSum=-3.674;QD=0.68;ReadPosRankSum=0.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,19:141:99:126,0,202 chrVIII 6098 . A G 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.19;MQ0=101;MQRankSum=-3.413;QD=0.81;ReadPosRankSum=-0.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,17:117:99:125,0,181 chrVIII 6105 . A C 383 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.67;MQ0=93;QD=3.48;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:54,56:110:48:416,48,0 chrVIII 6149 . T G 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.368;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=1;MLEAF=0.500;MQ=13.53;MQ0=55;MQRankSum=3.538;QD=1.66;ReadPosRankSum=-3.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,32:86:81:173,0,81 chrVIII 6581 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=2;QD=1.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:6:55,6,0 chrVIII 11962 . A C 114.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.6111;MLEAC=1;MLEAF=0.500;MQ=10.87;MQ0=39;MQRankSum=1.666;QD=2.38;ReadPosRankSum=1.179;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,9:48:1:143,0,1 chrVIII 11963 . C T 117.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.6111;MLEAC=1;MLEAF=0.500;MQ=10.87;MQ0=39;MQRankSum=1.179;QD=2.45;ReadPosRankSum=1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,9:48:1:146,0,1 chrVIII 12094 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=10;MQRankSum=0.736;QD=1.75;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,9:13:6:54,6,0 chrVIII 12097 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=1;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrVIII 12184 . A C 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=10.14;MQ0=148;MQRankSum=-2.152;QD=1.73;ReadPosRankSum=0.134;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:98,94:193:99:363,0,130 chrVIII 12229 . G A 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DP=168;Dels=0.00;FS=13.994;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=10.25;MQ0=125;MQRankSum=-2.762;QD=1.08;ReadPosRankSum=1.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,61:168:99:211,0,181 chrVIII 12262 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.14;MQ0=47;MQRankSum=-0.913;QD=0.88;ReadPosRankSum=0.492;SB=0.101 GT:AD:DP:GQ:PL 0/1:40,25:65:37:87,0,37 chrVIII 12276 . G A 75.51 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.42;MQ0=5;QD=4.44;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:108,12,0 chrVIII 12339 . G A 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=17.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:86,9,0 chrVIII 12344 . G A 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=0;QD=12.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:84,9,0 chrVIII 12348 . T A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=7.09;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:132,15,0 chrVIII 12350 . A C 123.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=0;MQRankSum=0.102;QD=7.24;ReadPosRankSum=0.306;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:1,16:17:18:156,18,0 chrVIII 12368 . C G 516.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=73;Dels=0.00;FS=56.404;HaplotypeScore=11.6961;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=9;MQRankSum=-1.658;QD=7.07;ReadPosRankSum=2.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,44:73:99:546,0,129 chrVIII 12409 . A T 468.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=77;Dels=0.00;FS=45.023;HaplotypeScore=2.6808;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=11;MQRankSum=-1.913;QD=6.08;ReadPosRankSum=-1.326;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:34,43:77:99:498,0,137 chrVIII 12413 . A G 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.524;DP=76;Dels=0.00;FS=41.811;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=11;MQRankSum=1.887;QD=1.25;ReadPosRankSum=1.746;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:46,30:76:99:125,0,495 chrVIII 12441 . C T 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=67;Dels=0.00;FS=78.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=11;MQRankSum=-1.242;QD=4.19;ReadPosRankSum=-1.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,31:67:99:311,0,159 chrVIII 12452 . T C 65.51 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=18.39;MQ0=6;QD=1.77;SB=-9.826e+01 GT:AD:DP:GQ:PL 1/1:0,32:37:12:98,12,0 chrVIII 12486 . G C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=1;QD=2.45;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:81,9,0 chrVIII 12490 . T C 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=1;QD=2.19;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:89,9,0 chrVIII 12492 . G C 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=1;QD=2.19;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:89,9,0 chrVIII 12511 . T A 133.22 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=0;MQRankSum=0.650;QD=4.04;ReadPosRankSum=1.516;SB=9.77 GT:AD:DP:GQ:PL 1/1:1,31:33:18:166,18,0 chrVIII 12512 . T C 111.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DP=33;Dels=0.00;FS=12.175;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=0;MQRankSum=0.038;QD=3.37;ReadPosRankSum=1.924;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:2,31:33:11:141,0,11 chrVIII 12513 . A C 163.06 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=4.94;SB=-3.107e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:21:196,21,0 chrVIII 12520 . T C 191.03 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=4.78;SB=-3.004e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:24:224,24,0 chrVIII 12522 . A G 210.01 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=5.25;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:27:243,27,0 chrVIII 12528 . G A 188.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=4.95;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:27:221,27,0 chrVIII 12529 . G T 186.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=4.90;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:27:219,27,0 chrVIII 12530 . C G 133.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DP=38;Dels=0.00;FS=28.470;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=-0.033;QD=3.51;ReadPosRankSum=0.556;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/1:2,36:38:1:162,0,1 chrVIII 12533 . G A 212.01 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=4.61;SB=-3.102e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:27:245,27,0 chrVIII 12537 . C A 158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DP=49;Dels=0.00;FS=42.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=-0.730;QD=3.22;ReadPosRankSum=0.480;SB=-3.022e+00 GT:AD:DP:GQ:PL 0/1:3,46:49:26:188,0,26 chrVIII 12546 . T C 264 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=44.8908;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;MQRankSum=1.604;QD=4.89;ReadPosRankSum=1.668;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:33:297,33,0 chrVIII 12548 . C T 278 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=44.8908;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=5.15;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:33:311,33,0 chrVIII 12555 . C T 299 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=0;QD=5.25;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:36:332,36,0 chrVIII 12557 . A G 272 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=0;QD=4.77;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:36:305,36,0 chrVIII 12563 . T C 295 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;MQRankSum=-0.917;QD=4.34;ReadPosRankSum=1.681;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:36:328,36,0 chrVIII 12605 . G A 335 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;QD=5.78;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:39:368,39,0 chrVIII 12606 . G C 267.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;DP=58;Dels=0.00;FS=100.273;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;MQRankSum=2.985;QD=4.62;ReadPosRankSum=0.000;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:9,49:58:9:300,9,0 chrVIII 12608 . A G 274.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.616;DP=59;Dels=0.00;FS=107.982;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;MQRankSum=2.677;QD=4.66;ReadPosRankSum=0.616;SB=-7.983e-01 GT:AD:DP:GQ:PL 1/1:10,49:59:10:307,10,0 chrVIII 12613 . T A 336 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=5.33;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:39:369,39,0 chrVIII 12616 . T A 259.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=64;Dels=0.00;FS=117.894;HaplotypeScore=9.6327;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=1;MQRankSum=3.594;QD=4.05;ReadPosRankSum=0.769;SB=-3.229e+00 GT:AD:DP:GQ:PL 0/1:12,52:64:10:289,0,10 chrVIII 12630 . A G 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.618;DP=65;Dels=0.05;FS=56.204;HaplotypeScore=30.4274;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=1;MQRankSum=3.957;QD=7.57;ReadPosRankSum=1.039;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:9,53:62:57:525,57,0 chrVIII 12637 . T C 421.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=65;Dels=0.00;FS=70.482;HaplotypeScore=14.4124;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=1;MQRankSum=3.397;QD=6.48;ReadPosRankSum=2.159;SB=-1.444e+02 GT:AD:DP:GQ:PL 1/1:13,52:65:13:454,13,0 chrVIII 12662 . A G 356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;DP=51;Dels=0.00;FS=23.932;HaplotypeScore=8.5460;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=1;MQRankSum=2.587;QD=6.98;ReadPosRankSum=-0.097;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:6,45:51:3:386,3,0 chrVIII 12664 . G A 403.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.475;DP=54;Dels=0.00;FS=16.895;HaplotypeScore=7.5726;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=1;MQRankSum=2.475;QD=7.47;ReadPosRankSum=-0.825;SB=-3.676e+02 GT:AD:DP:GQ:PL 1/1:5,49:54:11:436,11,0 chrVIII 12721 . T A 1635 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=19.46;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1668,180,0 chrVIII 12722 . T G 1569 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=18.68;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1602,177,0 chrVIII 12758 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=108;Dels=0.00;FS=2.602;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;MQRankSum=0.142;QD=20.26;ReadPosRankSum=2.878;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2221,243,0 chrVIII 12791 . C T 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1461;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;MQRankSum=-0.611;QD=19.21;ReadPosRankSum=1.257;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1992,188,0 chrVIII 12803 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=22.42;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2185,228,0 chrVIII 12866 . G A 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=93;Dels=0.00;FS=10.417;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=2.390;QD=21.83;ReadPosRankSum=-0.603;SB=-8.328e+02 GT:AD:DP:GQ:PL 1/1:7,84:93:99:2063,190,0 chrVIII 12931 . G A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.512;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=1.234;QD=23.35;ReadPosRankSum=1.859;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1691,171,0 chrVIII 12972 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=87;Dels=0.00;FS=3.434;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.047;QD=19.07;ReadPosRankSum=1.692;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1692,186,0 chrVIII 12985 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.51;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1653,177,0 chrVIII 13001 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.97;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1950,198,0 chrVIII 13065 . G A 2025.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=109;Dels=0.00;FS=2.293;HaplotypeScore=4.0400;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=5.364;QD=18.58;ReadPosRankSum=-3.977;SB=-1.115e+03 GT:AD:DP:GQ:PL 0/1:16,93:109:99:2055,0,179 chrVIII 13093 . C T 2185.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=119;Dels=0.00;FS=1.040;HaplotypeScore=4.8834;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=5.483;QD=18.36;ReadPosRankSum=1.733;SB=-9.560e+02 GT:AD:DP:GQ:PL 0/1:16,102:119:99:2215,0,113 chrVIII 13117 . T G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.128;QD=20.49;ReadPosRankSum=1.669;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2287,240,0 chrVIII 13126 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.894;DP=115;Dels=0.00;FS=2.584;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=2.478;QD=17.96;ReadPosRankSum=2.850;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2098,151,0 chrVIII 13185 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9234;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.47;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2264,237,0 chrVIII 13244 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.60;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2849,288,0 chrVIII 13277 . A C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.145;QD=23.53;ReadPosRankSum=1.703;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2833,300,0 chrVIII 13526 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.17;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2595,273,0 chrVIII 13589 . A G 2783 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.07;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2816,303,0 chrVIII 13662 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.24;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2841,288,0 chrVIII 13787 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.733;DP=163;Dels=0.00;FS=2.581;HaplotypeScore=9.8491;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=2.932;QD=24.70;ReadPosRankSum=-0.174;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:4026,403,0 chrVIII 13851 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6242;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.28;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3489,360,0 chrVIII 13901 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.42;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3834,402,0 chrVIII 13934 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.763;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=4.105;QD=22.03;ReadPosRankSum=0.366;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:6,180:186:99:4097,358,0 chrVIII 13957 . G T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.59;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4451,472,0 chrVIII 14034 . A C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.25;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3459,360,0 chrVIII 14074 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.04;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3555,367,0 chrVIII 14102 . T G 3565.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.61;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3565,378,0 chrVIII 14130 . G C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.25;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3337,357,0 chrVIII 14146 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.68;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3047,315,0 chrVIII 14381 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.411;QD=21.71;ReadPosRankSum=1.696;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2139,231,0 chrVIII 14584 . G C 1647 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=18.5168;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=14.32;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1680,192,0 chrVIII 14669 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.61;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3101,316,0 chrVIII 14685 . T C 3111 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.20;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3144,324,0 chrVIII 14784 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=297;Dels=0.00;FS=7.042;HaplotypeScore=258.1915;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=1;MQRankSum=1.426;QD=15.46;ReadPosRankSum=3.776;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:5,286:296:99:4592,529,0 chrVIII 14786 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=300;Dels=0.00;FS=99.109;HaplotypeScore=234.1447;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=-7.820;QD=0.22;ReadPosRankSum=-1.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,68:300:97:97,0,4253 chrVIII 14835 . G A 716.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;DP=256;Dels=0.00;FS=46.868;HaplotypeScore=13.2981;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=0;MQRankSum=-7.388;QD=2.80;ReadPosRankSum=2.263;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:196,57:256:99:746,0,3632 chrVIII 14842 . A G 686.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DP=253;Dels=0.00;FS=28.558;HaplotypeScore=16.5076;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=-7.496;QD=2.71;ReadPosRankSum=1.893;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:195,56:253:99:716,0,3841 chrVIII 14881 . G A 921.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DP=212;Dels=0.00;FS=0.575;HaplotypeScore=12.0341;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=0;MQRankSum=-9.102;QD=4.34;ReadPosRankSum=-2.018;SB=-4.870e+02 GT:AD:DP:GQ:PL 0/1:154,57:212:99:951,0,3270 chrVIII 14890 . T A 1052.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DP=222;Dels=0.00;FS=1.142;HaplotypeScore=19.1322;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=0;MQRankSum=-9.011;QD=4.74;ReadPosRankSum=-1.933;SB=-4.890e+02 GT:AD:DP:GQ:PL 0/1:156,66:222:99:1082,0,3592 chrVIII 14933 . C G 1830.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.028;DP=280;Dels=0.00;FS=3.446;HaplotypeScore=25.4718;MLEAC=1;MLEAF=0.500;MQ=51.59;MQ0=0;MQRankSum=-9.014;QD=6.54;ReadPosRankSum=2.928;SB=-1.045e+03 GT:AD:DP:GQ:PL 0/1:165,105:280:99:1860,0,3349 chrVIII 14947 . C T 3895.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;DP=291;Dels=0.00;FS=1.450;HaplotypeScore=21.9899;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=0;MQRankSum=8.660;QD=13.38;ReadPosRankSum=-1.913;SB=-1.782e+03 GT:AD:DP:GQ:PL 0/1:113,175:291:99:3895,0,1905 chrVIII 15016 . A C 358.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;DP=243;Dels=0.00;FS=21.825;HaplotypeScore=11.6883;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=-9.345;QD=1.47;ReadPosRankSum=-0.609;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:192,50:243:99:388,0,3943 chrVIII 15017 . T A 341.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=243;Dels=0.00;FS=28.316;HaplotypeScore=13.2657;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=-8.656;QD=1.40;ReadPosRankSum=-1.048;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:192,51:243:99:371,0,4180 chrVIII 15027 . G T 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.942;DP=244;Dels=0.00;FS=55.546;HaplotypeScore=14.8755;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=-9.517;QD=0.99;ReadPosRankSum=-2.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,46:244:99:271,0,4084 chrVIII 15038 . G C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=212;Dels=0.00;FS=62.093;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=-8.260;QD=0.14;ReadPosRankSum=-2.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,32:212:60:60,0,3926 chrVIII 15093 . G T 374.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;DP=223;Dels=0.00;FS=29.739;HaplotypeScore=7.9046;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=0;MQRankSum=-8.120;QD=1.68;ReadPosRankSum=-0.608;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:166,57:223:99:404,0,3735 chrVIII 15103 . G C 484.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=233;Dels=0.00;FS=19.414;HaplotypeScore=15.4789;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=-6.782;QD=2.08;ReadPosRankSum=1.223;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:169,61:233:99:514,0,3803 chrVIII 15106 . T G 517.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;DP=231;Dels=0.00;FS=19.337;HaplotypeScore=16.0897;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=-5.844;QD=2.24;ReadPosRankSum=1.803;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:169,62:231:99:547,0,3654 chrVIII 15107 . C A 586.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.089;DP=234;Dels=0.00;FS=19.176;HaplotypeScore=17.0813;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-5.813;QD=2.50;ReadPosRankSum=1.753;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:171,63:234:99:616,0,3517 chrVIII 15115 . G A 591.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DP=249;Dels=0.00;FS=16.854;HaplotypeScore=14.6113;MLEAC=1;MLEAF=0.500;MQ=54.91;MQ0=0;MQRankSum=-7.138;QD=2.37;ReadPosRankSum=0.476;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:168,80:249:99:621,0,3571 chrVIII 15193 . C T 202.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;DP=239;Dels=0.00;FS=59.733;HaplotypeScore=14.2773;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=0;MQRankSum=-6.346;QD=0.85;ReadPosRankSum=-1.347;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:172,67:239:99:232,0,3569 chrVIII 15206 . A T 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.025;DP=229;Dels=0.00;FS=102.125;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-9.524;QD=0.71;ReadPosRankSum=-0.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,60:229:99:193,0,3337 chrVIII 15219 . G A 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.978;DP=228;Dels=0.00;FS=106.952;HaplotypeScore=10.9321;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-10.769;QD=0.60;ReadPosRankSum=-0.154;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,61:228:99:167,0,3517 chrVIII 15222 . G C 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DP=230;Dels=0.00;FS=123.875;HaplotypeScore=16.6600;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=-10.950;QD=0.42;ReadPosRankSum=1.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,57:230:99:127,0,3550 chrVIII 15223 . T A 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;DP=229;Dels=0.00;FS=117.521;HaplotypeScore=16.6600;MLEAC=1;MLEAF=0.500;MQ=53.89;MQ0=0;MQRankSum=-10.565;QD=0.53;ReadPosRankSum=0.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,58:229:99:152,0,3633 chrVIII 15234 . T C 228.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.142;DP=223;Dels=0.00;FS=142.229;HaplotypeScore=14.3486;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-11.457;QD=1.02;ReadPosRankSum=0.527;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,62:223:99:258,0,3300 chrVIII 15237 . G A 250.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DP=219;Dels=0.00;FS=151.984;HaplotypeScore=8.8826;MLEAC=1;MLEAF=0.500;MQ=52.62;MQ0=0;MQRankSum=-11.673;QD=1.14;ReadPosRankSum=-0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,65:219:99:280,0,3172 chrVIII 15245 . C T 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.308;DP=207;Dels=0.00;FS=174.903;HaplotypeScore=9.3406;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;MQRankSum=-11.022;QD=1.15;ReadPosRankSum=0.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,60:207:99:269,0,3039 chrVIII 15246 . A G 231.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.666;DP=208;Dels=0.00;FS=157.731;HaplotypeScore=9.3406;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=0;MQRankSum=-11.346;QD=1.11;ReadPosRankSum=0.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,61:208:99:261,0,3114 chrVIII 15259 . A C 438.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DP=225;Dels=0.00;FS=147.188;HaplotypeScore=11.6661;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=-10.973;QD=1.95;ReadPosRankSum=-0.476;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,75:225:99:468,0,2821 chrVIII 15270 . G C 639.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;DP=229;Dels=0.01;FS=98.876;HaplotypeScore=10.5538;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-10.504;QD=2.79;ReadPosRankSum=-0.888;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:139,85:227:99:669,0,2613 chrVIII 15293 . C T 900.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=218;Dels=0.00;FS=57.301;HaplotypeScore=5.5095;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=0;MQRankSum=-9.306;QD=4.13;ReadPosRankSum=2.792;SB=-3.600e+02 GT:AD:DP:GQ:PL 0/1:132,85:218:99:930,0,2599 chrVIII 15326 . T C 1232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DP=206;Dels=0.00;FS=18.290;HaplotypeScore=9.3547;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=-7.641;QD=5.98;ReadPosRankSum=0.128;SB=-7.930e+02 GT:AD:DP:GQ:PL 0/1:118,86:206:99:1262,0,2324 chrVIII 15462 . C T 1937.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=54.90;MQ0=0;MQRankSum=-6.732;QD=10.47;ReadPosRankSum=1.295;SB=-8.220e+02 GT:AD:DP:GQ:PL 0/1:86,99:185:99:1967,0,1841 chrVIII 15569 . A T 1506.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;DP=158;Dels=0.00;FS=2.881;HaplotypeScore=9.2311;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-1.214;QD=9.53;ReadPosRankSum=-0.524;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:74,84:158:99:1536,0,1551 chrVIII 15588 . A G 1430.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-2.945;QD=8.27;ReadPosRankSum=-0.888;SB=-6.180e+02 GT:AD:DP:GQ:PL 0/1:89,84:173:99:1460,0,1684 chrVIII 15796 . T C 517.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=195;Dels=0.00;FS=37.051;HaplotypeScore=16.0015;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=0;MQRankSum=-10.428;QD=2.65;ReadPosRankSum=-0.020;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:135,55:195:99:547,0,2688 chrVIII 15797 . C T 540.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;DP=191;Dels=0.00;FS=33.792;HaplotypeScore=11.2694;MLEAC=1;MLEAF=0.500;MQ=53.13;MQ0=0;MQRankSum=-10.389;QD=2.83;ReadPosRankSum=0.097;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:134,56:191:99:570,0,2732 chrVIII 15805 . A T 665.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;DP=188;Dels=0.00;FS=32.865;HaplotypeScore=8.7160;MLEAC=1;MLEAF=0.500;MQ=53.43;MQ0=0;MQRankSum=-9.780;QD=3.54;ReadPosRankSum=-0.524;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:135,53:188:99:695,0,2823 chrVIII 15807 . G T 593.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DP=186;Dels=0.00;FS=53.238;HaplotypeScore=7.1933;MLEAC=1;MLEAF=0.500;MQ=53.49;MQ0=0;MQRankSum=-10.379;QD=3.19;ReadPosRankSum=0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,49:186:99:623,0,2675 chrVIII 15819 . T C 564.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DP=193;Dels=0.00;FS=134.487;HaplotypeScore=9.5076;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=0;MQRankSum=-9.282;QD=2.92;ReadPosRankSum=0.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,50:193:99:594,0,2967 chrVIII 15826 . A G 676.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;DP=200;Dels=0.00;FS=122.987;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-8.139;QD=3.38;ReadPosRankSum=-1.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,56:200:99:706,0,2940 chrVIII 15829 . G T 658.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.149;DP=197;Dels=0.00;FS=110.334;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=-8.007;QD=3.34;ReadPosRankSum=-0.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,55:197:99:688,0,2918 chrVIII 15839 . G A 816.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DP=217;Dels=0.00;FS=109.958;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=55.38;MQ0=0;MQRankSum=-7.372;QD=3.76;ReadPosRankSum=-0.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,61:217:99:846,0,3137 chrVIII 15845 . A G 754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=229;Dels=0.00;FS=108.307;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=-6.573;QD=3.29;ReadPosRankSum=-1.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,69:229:99:784,0,3358 chrVIII 15924 . A T 1239.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.127;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=20.9840;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=0;MQRankSum=-12.376;QD=4.54;ReadPosRankSum=2.615;SB=-1.025e+03 GT:AD:DP:GQ:PL 0/1:163,110:273:99:1269,0,3296 chrVIII 15927 . C T 1190.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.375;DP=267;Dels=0.01;FS=0.000;HaplotypeScore=22.0008;MLEAC=1;MLEAF=0.500;MQ=50.28;MQ0=0;MQRankSum=-12.916;QD=4.46;ReadPosRankSum=3.112;SB=-9.230e+02 GT:AD:DP:GQ:PL 0/1:161,102:265:99:1220,0,3489 chrVIII 15931 . T C 963.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.620;DP=254;Dels=0.00;FS=3.669;HaplotypeScore=10.4263;MLEAC=1;MLEAF=0.500;MQ=50.78;MQ0=0;MQRankSum=-12.839;QD=3.79;ReadPosRankSum=4.273;SB=-6.460e+02 GT:AD:DP:GQ:PL 0/1:163,91:254:99:993,0,3694 chrVIII 15932 . T G 955.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.986;DP=251;Dels=0.00;FS=3.675;HaplotypeScore=10.4263;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-12.682;QD=3.80;ReadPosRankSum=4.216;SB=-7.100e+02 GT:AD:DP:GQ:PL 0/1:160,89:251:99:985,0,3710 chrVIII 15947 . C T 665.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=233;Dels=0.00;FS=12.725;HaplotypeScore=17.4263;MLEAC=1;MLEAF=0.500;MQ=51.23;MQ0=0;MQRankSum=-12.069;QD=2.85;ReadPosRankSum=0.110;SB=-5.070e+02 GT:AD:DP:GQ:PL 0/1:150,81:233:99:695,0,3121 chrVIII 15950 . G A 555.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=222;Dels=0.00;FS=4.971;HaplotypeScore=14.9302;MLEAC=1;MLEAF=0.500;MQ=51.63;MQ0=0;MQRankSum=-11.024;QD=2.50;ReadPosRankSum=-0.832;SB=-4.670e+02 GT:AD:DP:GQ:PL 0/1:144,75:222:99:585,0,3118 chrVIII 15959 . T C 177.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;DP=200;Dels=0.00;FS=5.826;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-10.849;QD=0.89;ReadPosRankSum=-0.758;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:146,54:200:99:207,0,3243 chrVIII 16079 . G A 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.439;DP=212;Dels=0.00;FS=61.020;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=52.03;MQ0=0;MQRankSum=-10.588;QD=1.12;ReadPosRankSum=-0.008;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,57:212:99:267,0,3445 chrVIII 16080 . A G 240.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;DP=214;Dels=0.00;FS=60.768;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=0;MQRankSum=-10.334;QD=1.12;ReadPosRankSum=0.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,57:214:99:270,0,3552 chrVIII 16086 . C G 481.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.192;DP=212;Dels=0.00;FS=60.845;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=0;MQRankSum=-10.267;QD=2.27;ReadPosRankSum=1.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,58:212:99:511,0,3175 chrVIII 16099 . G T 722.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.116;DP=220;Dels=0.00;FS=35.504;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=50.70;MQ0=0;MQRankSum=-11.000;QD=3.28;ReadPosRankSum=0.450;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:145,71:220:99:752,0,3175 chrVIII 16172 . T G 184.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DP=163;Dels=0.00;FS=5.146;HaplotypeScore=11.6661;MLEAC=1;MLEAF=0.500;MQ=55.56;MQ0=0;MQRankSum=-8.297;QD=1.13;ReadPosRankSum=-1.477;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:133,29:163:99:214,0,2809 chrVIII 16308 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=4.404;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.698;QD=22.50;ReadPosRankSum=1.664;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2328,246,0 chrVIII 16326 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.30;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2223,228,0 chrVIII 16733 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4558;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.13;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4512,478,0 chrVIII 16805 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.085;DP=204;Dels=0.00;FS=87.939;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=8.417;QD=20.17;ReadPosRankSum=1.308;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:28,174:204:99:4115,375,0 chrVIII 16992 . A G 1001.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;DP=201;Dels=0.00;FS=13.983;HaplotypeScore=16.3434;MLEAC=1;MLEAF=0.500;MQ=49.54;MQ0=0;MQRankSum=-7.598;QD=4.98;ReadPosRankSum=1.595;SB=-4.070e+02 GT:AD:DP:GQ:PL 0/1:129,72:201:99:1031,0,2648 chrVIII 17019 . G A,C 4541.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.73;MQ0=0;QD=22.15;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/2:0,145,60:205:99:4541,1129,747,3412,0,3259 chrVIII 17021 . A T 638.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DP=203;Dels=0.00;FS=12.112;HaplotypeScore=10.0887;MLEAC=1;MLEAF=0.500;MQ=52.03;MQ0=0;MQRankSum=-7.353;QD=3.14;ReadPosRankSum=1.328;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:146,57:203:99:668,0,3212 chrVIII 17029 . G A 506.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.447;DP=200;Dels=0.00;FS=1.231;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=51.80;MQ0=0;MQRankSum=-8.966;QD=2.53;ReadPosRankSum=-1.001;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:143,57:200:99:536,0,3125 chrVIII 17072 . A G 435.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;DP=173;Dels=0.00;FS=20.177;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=47.76;MQ0=0;MQRankSum=-9.049;QD=2.51;ReadPosRankSum=1.008;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:130,43:173:99:465,0,2648 chrVIII 17075 . A G 507.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.187;DP=176;Dels=0.00;FS=24.571;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-8.686;QD=2.88;ReadPosRankSum=1.728;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:132,44:176:99:537,0,2704 chrVIII 17099 . A C 872.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=163;Dels=0.00;FS=39.545;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=41.46;MQ0=0;MQRankSum=-5.458;QD=5.35;ReadPosRankSum=1.295;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:103,59:163:99:902,0,1714 chrVIII 17103 . T C 892.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DP=162;Dels=0.00;FS=40.526;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=40.74;MQ0=0;MQRankSum=-4.266;QD=5.51;ReadPosRankSum=-0.093;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:95,64:162:99:922,0,1642 chrVIII 17120 . A C 1408.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.614;DP=159;Dels=0.00;FS=36.323;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=36.75;MQ0=0;MQRankSum=1.061;QD=8.86;ReadPosRankSum=0.687;SB=-8.840e+02 GT:AD:DP:GQ:PL 0/1:72,87:159:99:1438,0,1130 chrVIII 17127 . T A 1349.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DP=160;Dels=0.00;FS=30.077;HaplotypeScore=75.0988;MLEAC=1;MLEAF=0.500;MQ=36.47;MQ0=0;MQRankSum=1.216;QD=8.43;ReadPosRankSum=-0.930;SB=-9.630e+02 GT:AD:DP:GQ:PL 0/1:70,90:160:99:1379,0,1178 chrVIII 17132 . T G 1141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DP=154;Dels=0.00;FS=47.038;HaplotypeScore=80.5984;MLEAC=1;MLEAF=0.500;MQ=36.16;MQ0=0;MQRankSum=1.580;QD=7.41;ReadPosRankSum=-1.268;SB=-9.710e+02 GT:AD:DP:GQ:PL 0/1:69,85:154:99:1171,0,1144 chrVIII 17151 . A G 1093.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.394;DP=152;Dels=0.00;FS=46.181;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=0;MQRankSum=1.017;QD=7.19;ReadPosRankSum=-2.476;SB=-7.640e+02 GT:AD:DP:GQ:PL 0/1:64,88:152:99:1123,0,969 chrVIII 17157 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;MQRankSum=0.854;QD=17.67;ReadPosRankSum=1.709;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2684,291,0 chrVIII 17193 . G A 380.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=127;Dels=0.00;FS=19.872;HaplotypeScore=10.8547;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=0;MQRankSum=-6.273;QD=2.99;ReadPosRankSum=-5.462;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:89,38:127:99:410,0,1609 chrVIII 17200 . G A 271.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;DP=119;Dels=0.00;FS=22.421;HaplotypeScore=3.5118;MLEAC=1;MLEAF=0.500;MQ=48.88;MQ0=0;MQRankSum=-7.013;QD=2.28;ReadPosRankSum=-6.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,29:119:99:301,0,1622 chrVIII 17203 . A T 233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DP=117;Dels=0.00;FS=27.071;HaplotypeScore=4.1560;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=0;MQRankSum=-7.262;QD=1.99;ReadPosRankSum=-6.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,27:117:99:263,0,1654 chrVIII 17315 . C G 2443 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=25.45;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2476,261,0 chrVIII 17528 . G C 1421 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=17.4753;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.52;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1454,159,0 chrVIII 17627 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.928;QD=21.79;ReadPosRankSum=2.408;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2604,270,0 chrVIII 17641 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.83;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2544,261,0 chrVIII 18917 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=25.32;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4558,469,0 chrVIII 19013 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.9689;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.46;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4434,457,0 chrVIII 19035 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=21.47;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4015,409,0 chrVIII 19058 . A C 2919 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=17.07;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2952,309,0 chrVIII 19062 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=16.85;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:2948,303,0 chrVIII 19101 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.277;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.949;QD=18.07;ReadPosRankSum=1.711;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3068,321,0 chrVIII 19172 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.8919;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.59;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4269,442,0 chrVIII 19808 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.8223;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.08;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4489,469,0 chrVIII 19914 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.99;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4898,508,0 chrVIII 20117 . T C 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.4248;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.975;QD=23.15;ReadPosRankSum=1.716;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:5024,535,0 chrVIII 20294 . G T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4237,450,0 chrVIII 20879 . G A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.06;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4978,505,0 chrVIII 20950 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4466,460,0 chrVIII 21911 . C A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3553,378,0 chrVIII 22560 . G C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.81;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3374,357,0 chrVIII 24674 . C T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4884,505,0 chrVIII 25432 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4882,525,0 chrVIII 25945 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.88;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3009,309,0 chrVIII 26177 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.51;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3317,363,0 chrVIII 26179 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.42;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3431,360,0 chrVIII 26924 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.47;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4365,448,0 chrVIII 27988 . A C 2871 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2904,309,0 chrVIII 28030 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.26;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2483,255,0 chrVIII 28073 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.69;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2686,276,0 chrVIII 28758 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=3.139;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=24.73;ReadPosRankSum=0.253;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4253,439,0 chrVIII 29272 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.16;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3820,405,0 chrVIII 29709 . T A 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.426;QD=25.72;ReadPosRankSum=1.707;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3498,352,0 chrVIII 29809 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.68;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2550,261,0 chrVIII 29863 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.50;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2752,282,0 chrVIII 30051 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2340,240,0 chrVIII 30556 . T C 2753 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2786,294,0 chrVIII 30659 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.74;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2581,267,0 chrVIII 30979 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2289,243,0 chrVIII 32029 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1226;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.63;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3734,402,0 chrVIII 32371 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.92;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2521,261,0 chrVIII 32438 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2611,276,0 chrVIII 32836 . G T 328 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=12.62;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,24:26:39:361,39,0 chrVIII 32859 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrVIII 33105 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.46;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1652,177,0 chrVIII 33167 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1967,201,0 chrVIII 33337 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.36;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2834,288,0 chrVIII 34071 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2955,315,0 chrVIII 34565 . G C 3102 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.68;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3135,336,0 chrVIII 36243 . G A 852 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.52;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,43:46:99:885,99,0 chrVIII 36805 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4609,472,0 chrVIII 37489 . G A 5810.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.94;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5810,601,0 chrVIII 37633 . C T 7425.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.7996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:7425,784,0 chrVIII 37931 . A G 6058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=21.9077;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.651;QD=23.48;ReadPosRankSum=1.719;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:6058,649,0 chrVIII 38733 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.895;QD=24.71;ReadPosRankSum=1.703;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2998,318,0 chrVIII 39238 . G C 5933.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.5647;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5933,622,0 chrVIII 39521 . C A 3179 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=123.3033;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.23;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3212,336,0 chrVIII 39906 . A G 1986 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.09;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2019,207,0 chrVIII 40485 . C G 4757.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.44;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4757,493,0 chrVIII 40899 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.68;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4096,433,0 chrVIII 41245 . T A 2975 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3008,321,0 chrVIII 41310 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=3.046;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.605;QD=26.62;ReadPosRankSum=2.409;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3228,328,0 chrVIII 41487 . T A 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=9.308;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.436;QD=24.96;ReadPosRankSum=2.271;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2779,291,0 chrVIII 41694 . T A 2263 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.19;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2296,249,0 chrVIII 41712 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.50;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2268,231,0 chrVIII 41934 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5108;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.44;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4547,466,0 chrVIII 42121 . C A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3605,381,0 chrVIII 42222 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.98;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2722,285,0 chrVIII 42238 . A T 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.380;QD=20.68;ReadPosRankSum=1.676;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2597,273,0 chrVIII 42616 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.83;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2841,300,0 chrVIII 42646 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.71;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2373,243,0 chrVIII 42657 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.48;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2611,279,0 chrVIII 42709 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.49;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3024,312,0 chrVIII 42880 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.798;DP=134;Dels=0.00;FS=5.278;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.046;QD=23.10;ReadPosRankSum=2.747;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:4,129:134:99:3128,310,0 chrVIII 42932 . T C 3061 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2170;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.86;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3094,333,0 chrVIII 42946 . T C 3142 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.52;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3175,333,0 chrVIII 43002 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5293;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.39;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3365,363,0 chrVIII 43614 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.13;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3001,306,0 chrVIII 43881 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8720;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3896,406,0 chrVIII 43928 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.31;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3331,343,0 chrVIII 44670 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.295;QD=22.56;ReadPosRankSum=1.659;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2199,234,0 chrVIII 44691 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.66;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2299,234,0 chrVIII 44706 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.80;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2092,216,0 chrVIII 44715 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-1.405;QD=18.65;ReadPosRankSum=1.667;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2010,222,0 chrVIII 44969 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0457;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.97;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3691,393,0 chrVIII 45099 . C G 2902 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.82;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2935,315,0 chrVIII 45102 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.41;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3073,313,0 chrVIII 45773 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1487,150,0 chrVIII 46007 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.03;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3429,357,0 chrVIII 46055 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.92;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2592,273,0 chrVIII 46079 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.45;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2894,303,0 chrVIII 46220 . A T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.48;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3310,337,0 chrVIII 46562 . T C 4537.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5825;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.39;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4537,481,0 chrVIII 46772 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.02;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4279,433,0 chrVIII 47072 . A G 6722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=256;Dels=0.00;FS=3.962;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.955;QD=26.26;ReadPosRankSum=1.650;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:6722,697,0 chrVIII 47159 . C T 6183.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.0691;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.13;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6183,643,0 chrVIII 47341 . A G 6244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=266;Dels=0.00;FS=5.905;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.143;QD=23.47;ReadPosRankSum=2.898;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:3,263:266:99:6244,664,0 chrVIII 48214 . G A 6212.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=8.0691;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.10;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:6212,643,0 chrVIII 48299 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=12.9097;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=17.61;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:4754,516,0 chrVIII 49107 . A C 6556.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=25.9718;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.93;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6556,700,0 chrVIII 49817 . A C 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.058;QD=20.75;ReadPosRankSum=1.716;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4628,495,0 chrVIII 50351 . T C 5562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=247;Dels=0.00;FS=3.435;HaplotypeScore=18.8910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.438;QD=22.52;ReadPosRankSum=1.676;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5562,583,0 chrVIII 50697 . A C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=4.477;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.849;QD=25.59;ReadPosRankSum=1.710;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4018,415,0 chrVIII 51314 . C A 7172.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.5131;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.61;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:7172,763,0 chrVIII 51892 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.9696;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.91;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3149,336,0 chrVIII 53770 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.087;QD=22.65;ReadPosRankSum=1.708;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3284,354,0 chrVIII 53905 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3432,352,0 chrVIII 54245 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3040,333,0 chrVIII 54302 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2761,282,0 chrVIII 54471 . A T 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=8.398;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.200;QD=25.65;ReadPosRankSum=2.408;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4565,469,0 chrVIII 55324 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.7577;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.53;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4636,478,0 chrVIII 55457 . G C 4629.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.95;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4629,478,0 chrVIII 55458 . G C 4606.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.77;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:4606,475,0 chrVIII 55990 . G T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.59;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:4008,420,0 chrVIII 56225 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=8.911;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=1.340;QD=17.36;ReadPosRankSum=2.394;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2359,258,0 chrVIII 56250 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=19.79;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2427,255,0 chrVIII 56252 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=120;Dels=0.00;FS=4.920;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-1.011;QD=19.79;ReadPosRankSum=3.769;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:5,115:120:99:2408,252,0 chrVIII 56364 . T G 2894 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.92;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2927,318,0 chrVIII 56423 . C T 765.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=122;Dels=0.00;FS=5.916;HaplotypeScore=17.3549;MLEAC=1;MLEAF=0.500;MQ=35.90;MQ0=0;MQRankSum=-0.325;QD=6.28;ReadPosRankSum=6.812;SB=-6.436e+02 GT:AD:DP:GQ:PL 0/1:56,65:122:5:795,0,5 chrVIII 56538 . T A 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=5.404;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-0.499;QD=24.02;ReadPosRankSum=1.674;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1450,147,0 chrVIII 56604 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.12;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1767,180,0 chrVIII 56867 . T C 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=210;Dels=0.00;FS=3.019;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.392;QD=24.07;ReadPosRankSum=2.414;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:5055,541,0 chrVIII 57176 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3148,333,0 chrVIII 57484 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=6.481;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=0.449;QD=24.39;ReadPosRankSum=2.312;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2667,279,0 chrVIII 57580 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.448;QD=21.60;ReadPosRankSum=1.693;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1977,204,0 chrVIII 57605 . T C 2480 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.62;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2513,264,0 chrVIII 57698 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.31;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2412,261,0 chrVIII 57836 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=144;Dels=0.00;FS=5.452;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=2.176;QD=23.24;ReadPosRankSum=2.881;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3346,354,0 chrVIII 57905 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3369;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.24;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4242,430,0 chrVIII 57977 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=196;Dels=0.00;FS=2.931;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.883;QD=24.66;ReadPosRankSum=2.224;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4833,516,0 chrVIII 58040 . C T 5513.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.5486;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.61;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5513,583,0 chrVIII 58390 . A G 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=197;Dels=0.00;FS=6.088;HaplotypeScore=6.6615;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.521;QD=23.54;ReadPosRankSum=2.964;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:3,192:197:99:4638,470,0 chrVIII 58411 . A T 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=3.054;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.918;QD=25.11;ReadPosRankSum=1.680;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5022,514,0 chrVIII 58546 . G A 6826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=4.523;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.474;QD=26.66;ReadPosRankSum=1.026;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:6826,700,0 chrVIII 58620 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=215;Dels=0.00;FS=3.025;HaplotypeScore=16.0496;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=2.067;QD=23.40;ReadPosRankSum=2.334;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:5031,523,0 chrVIII 58670 . A C 4945.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.048;QD=22.68;ReadPosRankSum=1.716;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4945,531,0 chrVIII 58676 . A G 4726.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.264;QD=22.61;ReadPosRankSum=2.379;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4726,499,0 chrVIII 58677 . A G 4758.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.428;QD=22.77;ReadPosRankSum=1.688;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4758,496,0 chrVIII 58723 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.605;QD=21.22;ReadPosRankSum=2.388;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4265,451,0 chrVIII 58733 . A T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.16;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4105,424,0 chrVIII 59106 . T C 1471 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.11;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1504,162,0 chrVIII 59205 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2271,237,0 chrVIII 59575 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4485,466,0 chrVIII 59801 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=3.340;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.415;QD=25.00;ReadPosRankSum=1.711;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4100,430,0 chrVIII 59916 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.12;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3038,312,0 chrVIII 59936 . G C 3013 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3272;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.83;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3046,318,0 chrVIII 60191 . C T 4063.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=23.09;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4063,424,0 chrVIII 60199 . G A 2972 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=180;Dels=0.04;FS=12.284;HaplotypeScore=11.5598;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.308;QD=16.51;ReadPosRankSum=2.646;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3005,351,0 chrVIII 60200 . A G 2940 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.307;DP=176;Dels=0.02;FS=13.064;HaplotypeScore=12.3485;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=1.243;QD=16.70;ReadPosRankSum=4.253;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:7,164:173:99:2973,348,0 chrVIII 60451 . T G 2693 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.20;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2726,288,0 chrVIII 60493 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.30;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2899,306,0 chrVIII 60764 . T C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.304;QD=20.96;ReadPosRankSum=1.653;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2779,285,0 chrVIII 60785 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.45;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2630,270,0 chrVIII 61047 . G T 2515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.46;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2548,267,0 chrVIII 61049 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.24;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2613,273,0 chrVIII 61125 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.73;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2852,297,0 chrVIII 62174 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.377;QD=23.32;ReadPosRankSum=1.689;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3754,402,0 chrVIII 62587 . G A 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=7.5093;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.070;QD=23.49;ReadPosRankSum=-1.325;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3228,325,0 chrVIII 62698 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=20.48;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1569,168,0 chrVIII 62702 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=19.73;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1493,159,0 chrVIII 62711 . A C 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=18.11;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1319,138,0 chrVIII 62714 . G T 1226 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=18.58;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1259,132,0 chrVIII 62715 . C G 1168 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=17.70;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1201,132,0 chrVIII 62730 . C A 1180 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=17.10;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1213,123,0 chrVIII 62734 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=15.23;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1099,114,0 chrVIII 62972 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=26.28;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1610,168,0 chrVIII 63044 . T C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.531;QD=23.91;ReadPosRankSum=3.195;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1826,195,0 chrVIII 63582 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.72;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3272,342,0 chrVIII 63807 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.69;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3021,327,0 chrVIII 64236 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.60;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1276,132,0 chrVIII 64407 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:961,99,0 chrVIII 64564 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.75;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1986,210,0 chrVIII 64729 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.33;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2221,231,0 chrVIII 64748 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.381;QD=22.08;ReadPosRankSum=1.628;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2241,240,0 chrVIII 65200 . A G 5454.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5454,588,0 chrVIII 65380 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.47;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3887,406,0 chrVIII 65566 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=116;Dels=0.00;FS=3.848;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.608;QD=23.26;ReadPosRankSum=1.702;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2731,285,0 chrVIII 66123 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.72;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2600,276,0 chrVIII 66280 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.60;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4895,505,0 chrVIII 66559 . A G 6292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=301;Dels=0.00;FS=2.837;HaplotypeScore=1184.5587;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.314;QD=20.90;ReadPosRankSum=2.433;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:2,299:301:99:6292,661,0 chrVIII 66587 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=300;Dels=0.00;FS=20.867;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-2.158;QD=15.64;ReadPosRankSum=2.303;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:5,295:300:99:4693,470,0 chrVIII 66641 . A C 6196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.816;QD=20.93;ReadPosRankSum=1.720;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:1,294:296:99:6196,681,0 chrVIII 66700 . G A 5915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=253;Dels=0.00;FS=3.691;HaplotypeScore=23.3278;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.564;QD=23.38;ReadPosRankSum=-0.182;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,247:253:99:5915,586,0 chrVIII 66740 . C T 6853.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.39;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6853,709,0 chrVIII 67629 . G T 2311 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.3161;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=14.63;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:2344,261,0 chrVIII 67971 . C T 5239.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=25.4521;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.38;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5239,564,0 chrVIII 68025 . G A 4916.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.6250;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.95;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4916,525,0 chrVIII 68121 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5911;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.28;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3989,409,0 chrVIII 68259 . C A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3578,384,0 chrVIII 68352 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3221,336,0 chrVIII 68367 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.68;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3241,336,0 chrVIII 68508 . A C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.037;QD=23.79;ReadPosRankSum=1.708;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3355,351,0 chrVIII 69126 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3629,373,0 chrVIII 69180 . G A 5205.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5205,547,0 chrVIII 69672 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4138,430,0 chrVIII 70542 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.58;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4273,436,0 chrVIII 70548 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=3.032;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.668;QD=22.40;ReadPosRankSum=2.411;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4346,451,0 chrVIII 70653 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.67;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4308,439,0 chrVIII 70663 . C T 4544.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.3620;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.38;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4544,469,0 chrVIII 70875 . C A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.64;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5060,535,0 chrVIII 71987 . A G 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-1.538;QD=15.81;ReadPosRankSum=1.693;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1440,150,0 chrVIII 72011 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=15.60;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1375,144,0 chrVIII 72247 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=23.57;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2767,285,0 chrVIII 72400 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2802,303,0 chrVIII 72697 . C G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3787,399,0 chrVIII 77502 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=133;Dels=0.00;FS=12.039;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.870;QD=23.32;ReadPosRankSum=2.855;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3134,348,0 chrVIII 77694 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.98;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3654,387,0 chrVIII 77766 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3669,390,0 chrVIII 77853 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.10;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3244,342,0 chrVIII 77919 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.20;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3230,348,0 chrVIII 78204 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3840,391,0 chrVIII 78449 . C T 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.557;QD=25.64;ReadPosRankSum=-0.888;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3084,297,0 chrVIII 78570 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.92;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1977,201,0 chrVIII 78572 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.63;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1979,201,0 chrVIII 78707 . T A 1008 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.33;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1041,105,0 chrVIII 78752 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.16;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:837,87,0 chrVIII 79037 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.65;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1931,201,0 chrVIII 79061 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.27;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2034,207,0 chrVIII 79120 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.62;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2323,246,0 chrVIII 79208 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.61;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2420,255,0 chrVIII 79319 . A T 2844 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.17;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2877,292,0 chrVIII 79512 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2861,309,0 chrVIII 79756 . T A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.26;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3282,334,0 chrVIII 79894 . T A 2719 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.76;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2752,279,0 chrVIII 79902 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.97;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2801,285,0 chrVIII 79937 . T G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.650;QD=19.75;ReadPosRankSum=-0.137;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2541,264,0 chrVIII 80012 . C G 3112 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.7983;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.58;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3145,345,0 chrVIII 80068 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.08;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3010,304,0 chrVIII 80077 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.068;QD=21.56;ReadPosRankSum=2.294;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2793,288,0 chrVIII 80210 . G C 2998 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.18;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3031,324,0 chrVIII 80249 . G T 3196 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=25.98;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3229,325,0 chrVIII 80479 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.24;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2199,225,0 chrVIII 80498 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.05;FS=0.000;HaplotypeScore=3.5678;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.37;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1989,216,0 chrVIII 80825 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2737,291,0 chrVIII 80882 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3889,429,0 chrVIII 81666 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.64;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2793,291,0 chrVIII 81685 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.75;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2313,240,0 chrVIII 81881 . G A 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=64;Dels=0.00;FS=64.916;HaplotypeScore=9.1851;MLEAC=1;MLEAF=0.500;MQ=52.53;MQ0=0;MQRankSum=-0.418;QD=1.34;ReadPosRankSum=-2.611;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,25:64:99:116,0,308 chrVIII 81886 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=66;Dels=0.00;FS=57.886;HaplotypeScore=10.6531;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-0.500;QD=1.20;ReadPosRankSum=-3.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,21:66:99:109,0,418 chrVIII 82223 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.02;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2808,288,0 chrVIII 82351 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0499;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.21;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2337,258,0 chrVIII 82408 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.63;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2467,255,0 chrVIII 82486 . G C 2583 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.00;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2616,267,0 chrVIII 82509 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.26;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2945,300,0 chrVIII 82570 . T A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.95;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3810,391,0 chrVIII 82588 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.66;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3998,415,0 chrVIII 83128 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=3.310;HaplotypeScore=13.0478;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.924;QD=20.45;ReadPosRankSum=1.674;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2508,270,0 chrVIII 83436 . C A 2469 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.97;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2502,258,0 chrVIII 83441 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.11;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2344,237,0 chrVIII 83454 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8075;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.02;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2450,249,0 chrVIII 83614 . A C 2228 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.28;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2261,234,0 chrVIII 83700 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=111;Dels=0.00;FS=3.693;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.756;QD=23.69;ReadPosRankSum=0.441;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2663,291,0 chrVIII 83781 . A T 2661 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.10;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2694,273,0 chrVIII 83838 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.98;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2539,264,0 chrVIII 83933 . G A 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.170;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.673;QD=23.15;ReadPosRankSum=1.554;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2765,282,0 chrVIII 83943 . T G 2461 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.22;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2494,255,0 chrVIII 84104 . G A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0918;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.75;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4584,478,0 chrVIII 84194 . C A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.54;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3780,405,0 chrVIII 84302 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=4.295;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.908;QD=20.34;ReadPosRankSum=1.690;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3356,354,0 chrVIII 84415 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=128;Dels=0.00;FS=3.018;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-2.046;QD=24.84;ReadPosRankSum=2.200;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3212,328,0 chrVIII 84445 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.69;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3366,343,0 chrVIII 84491 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.59;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2473,267,0 chrVIII 84581 . G T 1491 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.15;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1524,156,0 chrVIII 84663 . C G 1385 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8781;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=20.07;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1418,156,0 chrVIII 84686 . A G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;MQRankSum=-1.102;QD=19.41;ReadPosRankSum=1.654;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:96:887,96,0 chrVIII 84687 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=20.02;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:894,96,0 chrVIII 84699 . A G 694 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=14.16;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:78:727,78,0 chrVIII 84708 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=12.70;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:69:630,69,0 chrVIII 84777 . A C 2728 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=23.93;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2761,300,0 chrVIII 84820 . A G 2570 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.36;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2603,270,0 chrVIII 84829 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.33;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2358,252,0 chrVIII 84887 . T C 2681 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.95;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2714,285,0 chrVIII 84910 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.706;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.061;QD=22.05;ReadPosRankSum=2.412;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2943,309,0 chrVIII 84920 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.83;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3011,324,0 chrVIII 84969 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.71;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3335,343,0 chrVIII 85001 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.741;HaplotypeScore=10.5043;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.340;QD=23.40;ReadPosRankSum=1.711;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3954,420,0 chrVIII 85109 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.88;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2564,273,0 chrVIII 85132 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=24.26;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2338,240,0 chrVIII 85218 . C G 2333 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=24.82;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2366,243,0 chrVIII 85374 . A G 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;MQRankSum=-1.648;QD=22.46;ReadPosRankSum=1.648;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:954,99,0 chrVIII 85386 . T C 599 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=19.97;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:632,69,0 chrVIII 85389 . G T 509 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=18.85;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:57:542,57,0 chrVIII 92149 . T C 428 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=10.70;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:48:461,48,0 chrVIII 92232 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=23.59;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1802,183,0 chrVIII 92259 . T C 1115 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=21.44;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1148,117,0 chrVIII 92289 . G A 567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=4.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=-0.289;QD=15.75;ReadPosRankSum=-1.540;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:69:600,69,0 chrVIII 92299 . G A 493 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=13.69;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:526,60,0 chrVIII 92312 . A G 738 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=18.45;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:771,87,0 chrVIII 92313 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=18.55;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:775,87,0 chrVIII 92343 . C A 1196 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=21.75;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1229,135,0 chrVIII 92432 . C A 1187 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=22.40;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1220,126,0 chrVIII 92455 . C T 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=20.67;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:901,96,0 chrVIII 92474 . C G 899 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=20.43;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:932,99,0 chrVIII 92608 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.96;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,135,0 chrVIII 92658 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.38;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1722,186,0 chrVIII 92677 . T A 1851 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.69;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1884,195,0 chrVIII 92692 . T G 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=-0.776;QD=16.44;ReadPosRankSum=1.692;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1463,153,0 chrVIII 92694 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=17.51;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1486,153,0 chrVIII 92759 . A C 3890.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=22.88;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3890,414,0 chrVIII 92914 . C A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=23.59;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3703,381,0 chrVIII 92927 . G T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=23.28;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4167,432,0 chrVIII 92971 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=6.8365;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=22.45;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4085,435,0 chrVIII 92978 . C G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=21.68;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3903,423,0 chrVIII 93014 . G C 2814 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=17.70;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,154:159:99:2847,327,0 chrVIII 93026 . T C 2296 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=17.53;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2329,249,0 chrVIII 93033 . C T 1762 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=16.17;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1795,183,0 chrVIII 93035 . G A 1617 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=14.83;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1650,174,0 chrVIII 93055 . A G 1428 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-0.229;QD=13.47;ReadPosRankSum=2.934;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1461,156,0 chrVIII 93056 . A G 1414 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=13.73;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1447,156,0 chrVIII 93062 . A G 1240 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=11.81;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1273,141,0 chrVIII 93068 . A G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=1.155;QD=13.36;ReadPosRankSum=2.928;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1342,141,0 chrVIII 93086 . C T 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=12.98;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1136,123,0 chrVIII 93088 . T C 1028 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=12.09;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1061,117,0 chrVIII 93095 . A G 985 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=1.279;QD=11.59;ReadPosRankSum=1.691;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1018,111,0 chrVIII 93101 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=11.17;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1038,111,0 chrVIII 93125 . C T 987 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=12.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1020,117,0 chrVIII 93128 . G C 944 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=12.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:977,111,0 chrVIII 93136 . C T 773 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=12.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:93:806,93,0 chrVIII 93137 . C T 733 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=11.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:93:766,93,0 chrVIII 93140 . C T 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=9.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:81:632,81,0 chrVIII 93143 . T C 600 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=9.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:81:633,81,0 chrVIII 93146 . T C 739 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=11.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:93:772,93,0 chrVIII 93151 . T C 789 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=13.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:93:822,93,0 chrVIII 93153 . T C 749 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=12.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:93:782,93,0 chrVIII 93158 . G A 583 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=11.90;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:72:616,72,0 chrVIII 93159 . T A 582 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=11.88;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:72:615,72,0 chrVIII 93161 . C T 559 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=11.41;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:72:592,72,0 chrVIII 93163 . C T 549 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=9.98;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:69:582,69,0 chrVIII 93164 . G C 510 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=9.27;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:69:543,69,0 chrVIII 93251 . C T 1503 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=26.37;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1536,165,0 chrVIII 93257 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=24.35;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1372,150,0 chrVIII 93284 . A G 564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=9.379;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=-0.133;QD=21.69;ReadPosRankSum=1.600;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:72:597,72,0 chrVIII 93290 . C T 483 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=23.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:63:516,63,0 chrVIII 93391 . T C 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=2.89;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:84,9,0 chrVIII 93392 . C G 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=3.00;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:86,9,0 chrVIII 93395 . A G 109.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=4.37;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:15:142,15,0 chrVIII 93398 . G A 111.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=4.45;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:15:144,15,0 chrVIII 93401 . A G 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=4.42;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:18:161,18,0 chrVIII 93405 . T C 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=4.07;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:155,18,0 chrVIII 93407 . A G 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=4.20;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:159,18,0 chrVIII 93417 . T G 212.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=5.73;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:245,27,0 chrVIII 93422 . G A 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=7.15;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:33:312,33,0 chrVIII 93425 . T C 284 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=7.10;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:317,36,0 chrVIII 93446 . T A 348 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.70;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:42:381,42,0 chrVIII 93450 . A G 357 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;QD=8.71;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:42:390,42,0 chrVIII 93466 . T C 317 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;QD=9.06;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:350,42,0 chrVIII 93467 . A G 339 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;QD=9.69;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:372,42,0 chrVIII 93482 . G A 307 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=9.30;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:340,39,0 chrVIII 93486 . C A 261 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=9.00;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:294,33,0 chrVIII 93500 . A G 232 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=7.48;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:265,30,0 chrVIII 93506 . G C 305 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=8.97;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:338,36,0 chrVIII 93509 . G A 289 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=7.81;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:322,36,0 chrVIII 93512 . G C 264 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=7.33;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:297,33,0 chrVIII 93518 . G A 245 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=6.13;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:278,30,0 chrVIII 93525 . T C 259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=1.735;QD=5.76;ReadPosRankSum=2.341;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:2,43:45:33:292,33,0 chrVIII 93533 . A T 274 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=13.617;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;MQRankSum=-0.829;QD=5.96;ReadPosRankSum=1.657;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:36:307,36,0 chrVIII 93534 . T A 260 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;MQRankSum=-0.341;QD=5.42;ReadPosRankSum=2.854;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,45:48:36:293,36,0 chrVIII 93546 . A G 360 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=7.06;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:45:393,45,0 chrVIII 93547 . T C 367 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-0.163;QD=6.92;ReadPosRankSum=2.357;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,51:53:45:400,45,0 chrVIII 93555 . A G 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=6.25;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:383,45,0 chrVIII 93557 . G A 345 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=6.16;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:378,45,0 chrVIII 93558 . C T 388 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=6.93;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:48:421,48,0 chrVIII 93563 . T C 391 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=5.84;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:48:424,48,0 chrVIII 93566 . A T 415 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=6.19;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:48:448,48,0 chrVIII 93569 . A C 365 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.89;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:45:398,45,0 chrVIII 93571 . G A 366 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.90;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:45:399,45,0 chrVIII 93574 . T C 380 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=6.13;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:45:413,45,0 chrVIII 93578 . A G 354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=6.32;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:387,45,0 chrVIII 93580 . G C 368 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=6.57;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:401,45,0 chrVIII 93581 . A G 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=6.25;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:383,45,0 chrVIII 93585 . T C 376 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=4.95;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:45:409,45,0 chrVIII 93602 . A G 227 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=-0.545;QD=2.77;ReadPosRankSum=6.689;SB=3.00 GT:AD:DP:GQ:PL 1/1:20,62:82:30:260,30,0 chrVIII 93638 . T C 136.06 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=4.86;SB=-1.951e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:169,21,0 chrVIII 93655 . G A 530 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=14.32;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:563,60,0 chrVIII 93659 . T A 535 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=6.767;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=0.730;QD=14.08;ReadPosRankSum=1.550;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:60:568,60,0 chrVIII 93665 . C T 642 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=14.27;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:675,72,0 chrVIII 93752 . A G 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.327;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=-0.384;QD=25.45;ReadPosRankSum=1.713;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4708,501,0 chrVIII 93770 . A T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=25.74;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3784,393,0 chrVIII 93824 . T A 132.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=9.44;SB=-8.188e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:165,18,0 chrVIII 93842 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.54;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:56,6,0 chrVIII 93848 . T G 88.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.81;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:121,12,0 chrVIII 93857 . A G 205.03 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.32;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:238,24,0 chrVIII 93872 . T C 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.64;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:63:632,63,0 chrVIII 93875 . G A 563 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.238;QD=13.40;ReadPosRankSum=-1.320;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:63:596,63,0 chrVIII 93878 . T G 624 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.73;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:69:657,69,0 chrVIII 93884 . T C 737 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=12.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:84:770,84,0 chrVIII 93896 . A G 964 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=14.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:997,105,0 chrVIII 93928 . G T 983 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1016,108,0 chrVIII 93929 . A G 1005 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1038,108,0 chrVIII 93932 . A G 1018 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1051,108,0 chrVIII 93935 . C T 1014 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1047,108,0 chrVIII 93938 . C A 1071 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=12.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1104,114,0 chrVIII 93950 . T C 798 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:87:831,87,0 chrVIII 93961 . A G 559 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=0.020;QD=9.16;ReadPosRankSum=2.369;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:63:592,63,0 chrVIII 93962 . C T 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.03;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:63:625,63,0 chrVIII 93968 . A G 501 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=-1.501;QD=9.11;ReadPosRankSum=2.872;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:3,52:55:57:534,57,0 chrVIII 93971 . T G 410 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=9.11;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:48:443,48,0 chrVIII 93974 . G A 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=8.75;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:42:383,42,0 chrVIII 93977 . T C 215.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=5.38;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:248,27,0 chrVIII 93980 . A G 172.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=0.640;QD=4.65;ReadPosRankSum=2.810;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,34:37:21:205,21,0 chrVIII 93983 . A G 168.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=5.60;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:21:201,21,0 chrVIII 93995 . G A 134.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.94;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:167,18,0 chrVIII 93997 . A C 145.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.347;QD=9.68;ReadPosRankSum=1.504;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:18:178,18,0 chrVIII 94007 . T C 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.69;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:137,15,0 chrVIII 94010 . T C 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.95;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:112,12,0 chrVIII 94012 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.696;QD=5.10;ReadPosRankSum=1.393;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:83,9,0 chrVIII 94022 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.16;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:57,6,0 chrVIII 94024 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.36;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:53,6,0 chrVIII 94730 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=2.04;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:77,9,0 chrVIII 94736 . T G 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=2.45;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:86,9,0 chrVIII 94737 . T C 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=2.45;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:86,9,0 chrVIII 94741 . T C 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=2.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:89,9,0 chrVIII 94972 . A G 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=1.40;SB=-7.252e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:12:115,12,0 chrVIII 94976 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;MQRankSum=-2.922;QD=1.16;ReadPosRankSum=2.859;SB=-1.315e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:12:107,12,0 chrVIII 94977 . C T 72.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;MQRankSum=-1.732;QD=1.13;ReadPosRankSum=1.570;SB=-1.355e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:12:105,12,0 chrVIII 94981 . A G 398 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=5.17;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:48:431,48,0 chrVIII 95092 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=164;Dels=0.00;FS=5.913;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=1.148;QD=23.74;ReadPosRankSum=1.689;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:3893,414,0 chrVIII 95107 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9200;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.27;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4003,429,0 chrVIII 95292 . G A 4807.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.8666;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.28;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4807,496,0 chrVIII 95322 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.11;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4629,472,0 chrVIII 95423 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=4.491;HaplotypeScore=19.5810;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.617;QD=24.01;ReadPosRankSum=1.713;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4370,457,0 chrVIII 95481 . C A 2956 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.46;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2989,301,0 chrVIII 95661 . A T 3131 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.85;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3164,327,0 chrVIII 95871 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.60;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3533,358,0 chrVIII 96126 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.10;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3824,417,0 chrVIII 96393 . C T 4941.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4941,511,0 chrVIII 96485 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.6442;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.41;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3103,330,0 chrVIII 96654 . T A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.74;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3466,352,0 chrVIII 96942 . G C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.84;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3953,444,0 chrVIII 97362 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.13;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3667,373,0 chrVIII 97536 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6885;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.043;QD=22.96;ReadPosRankSum=-0.556;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3742,411,0 chrVIII 97599 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.29;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3716,393,0 chrVIII 97611 . G T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.58;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3678,384,0 chrVIII 97650 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=178;Dels=0.00;FS=3.004;HaplotypeScore=17.0085;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.645;QD=23.92;ReadPosRankSum=2.408;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4257,442,0 chrVIII 97798 . G A 5591.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.4435;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.85;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5591,577,0 chrVIII 97838 . C T 5704.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.6464;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.77;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5704,583,0 chrVIII 97856 . C T 5573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.744;QD=19.55;ReadPosRankSum=1.659;SB=-3.866e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:5573,571,0 chrVIII 97875 . G A 5532.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=18.56;SB=-3.822e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:5532,586,0 chrVIII 98284 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=16.5196;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.14;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2155,225,0 chrVIII 98376 . C T 5619.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=28.24;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5619,574,0 chrVIII 98484 . A T 5688.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.5488;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.62;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5688,577,0 chrVIII 98525 . C T 5593.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.27;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5593,606,0 chrVIII 98622 . C G 4799.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.9412;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.67;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,240:244:99:4799,525,0 chrVIII 98643 . C A 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.2870;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.706;QD=18.42;ReadPosRankSum=1.127;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3536,372,0 chrVIII 99089 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.27;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2851,294,0 chrVIII 99112 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.74;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3435,366,0 chrVIII 100079 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.95;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3305,354,0 chrVIII 100241 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=109;Dels=0.00;FS=5.278;HaplotypeScore=7.4579;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.695;QD=21.66;ReadPosRankSum=2.936;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2394,258,0 chrVIII 101020 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.64;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3067,315,0 chrVIII 101246 . A T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.09;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3738,382,0 chrVIII 101494 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3618,384,0 chrVIII 101857 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5240,541,0 chrVIII 102030 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.420;QD=24.48;ReadPosRankSum=1.715;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4847,505,0 chrVIII 102150 . C A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.8560;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3951,406,0 chrVIII 102263 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3954,406,0 chrVIII 102818 . G C 3122 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.46;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3155,342,0 chrVIII 103046 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.80;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3284,351,0 chrVIII 103070 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.693;QD=23.00;ReadPosRankSum=1.710;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3680,393,0 chrVIII 103106 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.06;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3897,394,0 chrVIII 103247 . A T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.69;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3631,384,0 chrVIII 104040 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.22;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2334,237,0 chrVIII 104091 . A C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.258;QD=20.63;ReadPosRankSum=1.695;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1972,210,0 chrVIII 104146 . C T 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.790;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=7.0536;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.118;QD=23.62;ReadPosRankSum=0.723;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2489,261,0 chrVIII 104423 . C A 1810 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.233;DP=120;Dels=0.00;FS=9.418;HaplotypeScore=8.5545;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=1.366;QD=15.08;ReadPosRankSum=3.953;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:7,113:120:99:1843,200,0 chrVIII 104426 . A C 1847 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=124;Dels=0.05;FS=0.000;HaplotypeScore=8.5545;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.678;QD=14.90;ReadPosRankSum=0.448;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1880,219,0 chrVIII 104429 . G A 2445 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.90;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2478,252,0 chrVIII 104540 . A T 2906 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2939,303,0 chrVIII 104953 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=3;QD=21.99;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:3,79:84:99:1880,189,0 chrVIII 105227 . C A 2180 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=25.35;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2213,231,0 chrVIII 105292 . T A 2057 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.65;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2090,222,0 chrVIII 105298 . T A 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.099;QD=21.03;ReadPosRankSum=1.658;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1989,204,0 chrVIII 105424 . G T 1636 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.17;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1669,168,0 chrVIII 105464 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.45;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1320,135,0 chrVIII 105532 . C T 740 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.21;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:84:773,84,0 chrVIII 105611 . A T 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:60,6,0 chrVIII 105612 . A T 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:60,6,0 chrVIII 105615 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrVIII 105621 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrVIII 105670 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=5.70;ReadPosRankSum=0.727;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:54,6,0 chrVIII 105685 . G T 223.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:256,27,0 chrVIII 106261 . T A 3033 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.86;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3066,330,0 chrVIII 106528 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.711;QD=23.77;ReadPosRankSum=1.696;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4516,466,0 chrVIII 107541 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.417;QD=22.42;ReadPosRankSum=1.627;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2253,231,0 chrVIII 107993 . T A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.35;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3391,346,0 chrVIII 108134 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.2146;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.99;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2600,264,0 chrVIII 108351 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.39;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1911,204,0 chrVIII 108387 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.18;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1990,204,0 chrVIII 108431 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1557,165,0 chrVIII 108568 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:971,102,0 chrVIII 109025 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.712;QD=23.01;ReadPosRankSum=0.194;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3116,327,0 chrVIII 110021 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2258,231,0 chrVIII 110970 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.28;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3539,361,0 chrVIII 111695 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.96;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2956,330,0 chrVIII 112492 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6110;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.18;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3575,375,0 chrVIII 112829 . A T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.810;QD=26.27;ReadPosRankSum=1.710;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4046,412,0 chrVIII 112966 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2334,240,0 chrVIII 113383 . A G 2183 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2216,243,0 chrVIII 113512 . A C 2992 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3025,318,0 chrVIII 113931 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3603,370,0 chrVIII 114144 . A G 4410.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.78;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4410,463,0 chrVIII 114337 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.61;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4921,508,0 chrVIII 114567 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.25;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3697,388,0 chrVIII 114744 . T A 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;DP=139;Dels=0.00;FS=3.031;HaplotypeScore=9.0869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.371;QD=21.71;ReadPosRankSum=2.344;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3050,307,0 chrVIII 114771 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.67;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3671,382,0 chrVIII 115977 . A T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3903,411,0 chrVIII 116310 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.26;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3197,328,0 chrVIII 116330 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.48;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2945,298,0 chrVIII 116378 . C A 2328 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7756;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.60;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2361,252,0 chrVIII 117504 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.18;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1812,195,0 chrVIII 117534 . A T 1685 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=20.30;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1718,183,0 chrVIII 117556 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=19.61;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1896,201,0 chrVIII 117572 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=19.18;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1778,183,0 chrVIII 117586 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=18.17;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1814,195,0 chrVIII 117605 . G C 1851 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=17.30;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1884,201,0 chrVIII 117608 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.46;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1866,195,0 chrVIII 118068 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.46;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3918,426,0 chrVIII 118187 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2994;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.153;QD=19.91;ReadPosRankSum=1.688;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3259,348,0 chrVIII 119414 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.171;QD=23.49;ReadPosRankSum=2.941;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2828,291,0 chrVIII 121315 . T C 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=182;Dels=0.00;FS=3.012;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.726;QD=25.47;ReadPosRankSum=2.422;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4635,481,0 chrVIII 121738 . A T 426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-2.869;QD=11.21;ReadPosRankSum=2.761;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:3,35:38:51:459,51,0 chrVIII 121745 . A T 432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.538;QD=14.90;ReadPosRankSum=1.614;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:51:465,51,0 chrVIII 122053 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=13.7962;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.72;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2405,246,0 chrVIII 122347 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=200;Dels=0.00;FS=6.087;HaplotypeScore=18.8969;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.031;QD=21.69;ReadPosRankSum=2.363;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4338,465,0 chrVIII 122655 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.69;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3704,379,0 chrVIII 124092 . T A 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.990;QD=26.54;ReadPosRankSum=1.683;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1891,201,0 chrVIII 124640 . C G 4362.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4362,468,0 chrVIII 124717 . T C 5824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=246;Dels=0.00;FS=2.549;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.127;QD=23.67;ReadPosRankSum=1.380;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:5824,628,0 chrVIII 124744 . G A 6432.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.55;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6432,646,0 chrVIII 125040 . A G 5403.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.34;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5403,580,0 chrVIII 125771 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.0225;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.47;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2850,291,0 chrVIII 125937 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=26.14;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4340,454,0 chrVIII 126572 . T C 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.770;QD=25.42;ReadPosRankSum=1.578;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2321,246,0 chrVIII 126792 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=26.5412;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.20;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2330,240,0 chrVIII 126873 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.91;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2185,234,0 chrVIII 126953 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.74;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1943,204,0 chrVIII 127010 . A T 2370 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.18;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2403,246,0 chrVIII 127040 . A T 2873 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.36;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2906,300,0 chrVIII 127727 . C G 1177 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.04;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:47:99:1210,129,0 chrVIII 127758 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.67;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1257,129,0 chrVIII 127766 . G C 1124 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.72;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1157,123,0 chrVIII 127853 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=4.719;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.355;QD=24.36;ReadPosRankSum=1.690;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:2079,219,0 chrVIII 127914 . G A 2468 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3705;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.18;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2501,258,0 chrVIII 128112 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.73;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2769,282,0 chrVIII 128119 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.96;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2441,252,0 chrVIII 128376 . A C 5597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=229;Dels=0.00;FS=6.194;HaplotypeScore=13.7621;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.759;QD=24.44;ReadPosRankSum=2.396;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5597,592,0 chrVIII 128736 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2906,297,0 chrVIII 129223 . A T 2621 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.64;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2654,273,0 chrVIII 129228 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.69;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2598,267,0 chrVIII 129445 . A G 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=180;Dels=0.00;FS=9.165;HaplotypeScore=8.8863;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.460;QD=25.06;ReadPosRankSum=3.207;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:4511,475,0 chrVIII 130043 . C T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4904,508,0 chrVIII 130198 . A C 5165.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5165,555,0 chrVIII 130265 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.6300;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.38;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,210:216:99:5050,543,0 chrVIII 130533 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.79;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2769,297,0 chrVIII 130538 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.25;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2503,267,0 chrVIII 130619 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.72;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2734,288,0 chrVIII 130652 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.86;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3085,321,0 chrVIII 130727 . T A 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=133;Dels=0.00;FS=2.865;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.065;QD=23.98;ReadPosRankSum=2.339;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3223,342,0 chrVIII 130783 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.27;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4447,466,0 chrVIII 131216 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.14;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3658,373,0 chrVIII 131324 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.23;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3912,426,0 chrVIII 131505 . T A 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=6.662;HaplotypeScore=11.4976;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.404;QD=21.67;ReadPosRankSum=2.306;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2634,285,0 chrVIII 131549 . G T 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=102.0076;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.323;QD=21.95;ReadPosRankSum=-0.068;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2821,294,0 chrVIII 131693 . G T 1645 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.08;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1678,174,0 chrVIII 131716 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.29;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1734,183,0 chrVIII 131723 . C A 1808 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.45;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1841,192,0 chrVIII 131900 . T A 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.473;QD=25.04;ReadPosRankSum=1.700;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2712,282,0 chrVIII 132095 . C A 2436 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2469,252,0 chrVIII 132165 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.70;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3121,324,0 chrVIII 132728 . A C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.148;DP=120;Dels=0.00;FS=9.208;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.155;QD=21.32;ReadPosRankSum=3.384;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:4,115:120:99:2591,273,0 chrVIII 132840 . A G 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.954;QD=21.24;ReadPosRankSum=1.591;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2115,228,0 chrVIII 132907 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.57;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1726,180,0 chrVIII 132911 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=22.33;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1574,162,0 chrVIII 132947 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=20.62;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1105,117,0 chrVIII 132971 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=19.39;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:886,93,0 chrVIII 132987 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=20.38;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:81:787,81,0 chrVIII 133001 . C T 737 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=22.33;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:78:770,78,0 chrVIII 133012 . T C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.194;DP=32;Dels=0.00;FS=10.280;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=1.034;QD=1.19;ReadPosRankSum=0.970;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,29:32:9:70,9,0 chrVIII 133123 . C T 147.06 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=4.46;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,11:33:21:180,21,0 chrVIII 133140 . G A 81.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:114,12,0 chrVIII 133235 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=3.026;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;MQRankSum=-1.603;QD=25.31;ReadPosRankSum=2.398;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2463,261,0 chrVIII 133437 . A T 1521 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.04;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1554,165,0 chrVIII 133485 . C A 1702 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=19.56;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1735,183,0 chrVIII 133487 . C G 1702 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=19.79;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1735,186,0 chrVIII 133760 . A C 1669 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=18.54;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1702,192,0 chrVIII 133952 . A T 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=2;MQRankSum=-0.929;QD=18.37;ReadPosRankSum=1.690;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1576,171,0 chrVIII 133963 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=2;QD=16.87;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1450,150,0 chrVIII 133967 . A C 1371 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=2;QD=16.72;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1404,150,0 chrVIII 134097 . A G 1909 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.31;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1942,219,0 chrVIII 134157 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.009;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.163;QD=23.46;ReadPosRankSum=2.400;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2332,246,0 chrVIII 134172 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=22.92;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2256,237,0 chrVIII 134180 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=22.40;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2183,228,0 chrVIII 134208 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=15.79;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1628,180,0 chrVIII 134240 . A T 1810 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=16.92;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1843,189,0 chrVIII 134264 . T G 178.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;DP=116;Dels=0.00;FS=2.819;HaplotypeScore=308.5605;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=-0.999;QD=1.53;ReadPosRankSum=4.363;SB=-1.121e+03 GT:AD:DP:GQ:PL 0/1:11,105:116:99:208,0,151 chrVIII 134427 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=24.36;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2347,240,0 chrVIII 134509 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=6.475;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.375;QD=24.51;ReadPosRankSum=2.411;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:3219,333,0 chrVIII 134524 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.25;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3234,336,0 chrVIII 134907 . G T 2725 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2758,294,0 chrVIII 135000 . A G 2287 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.13;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2320,243,0 chrVIII 135273 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.56;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1635,165,0 chrVIII 135388 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.381;QD=24.37;ReadPosRankSum=1.697;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2470,261,0 chrVIII 135849 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2903,306,0 chrVIII 136628 . T G 2248 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.14;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2281,237,0 chrVIII 136744 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.39;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2179,222,0 chrVIII 136896 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.28;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2534,261,0 chrVIII 136914 . T G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3234;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.504;QD=22.51;ReadPosRankSum=1.024;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2914,293,0 chrVIII 137022 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.6475;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.52;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3410,355,0 chrVIII 137028 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=162;Dels=0.00;FS=5.374;HaplotypeScore=9.0535;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.112;QD=20.48;ReadPosRankSum=1.475;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3317,360,0 chrVIII 137643 . C T 5779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=16.3084;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.769;QD=22.31;ReadPosRankSum=0.836;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:5779,585,0 chrVIII 137688 . A G 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=233;Dels=0.00;FS=8.371;HaplotypeScore=15.4539;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.962;QD=21.52;ReadPosRankSum=3.355;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:4,227:233:99:5014,523,0 chrVIII 137850 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9606;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.98;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3670,390,0 chrVIII 137880 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.210;HaplotypeScore=15.5520;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.876;QD=23.44;ReadPosRankSum=1.713;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4243,433,0 chrVIII 137997 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=21.3042;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3769,405,0 chrVIII 138316 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=26.52;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3660,373,0 chrVIII 138375 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.78;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3865,394,0 chrVIII 138395 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=161;Dels=0.00;FS=2.940;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.837;QD=21.85;ReadPosRankSum=2.388;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3518,372,0 chrVIII 138502 . T G 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.866;QD=23.64;ReadPosRankSum=1.703;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2870,312,0 chrVIII 138587 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.48;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3193,328,0 chrVIII 138689 . T G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.2312;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.512;QD=25.27;ReadPosRankSum=1.512;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3217,339,0 chrVIII 138717 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.76;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3326,360,0 chrVIII 139068 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.516;QD=25.98;ReadPosRankSum=1.705;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3352,351,0 chrVIII 141513 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.4116;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.40;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1903,198,0 chrVIII 143640 . C T 5240.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.15;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5240,547,0 chrVIII 144235 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.760;HaplotypeScore=13.1010;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.584;QD=23.17;ReadPosRankSum=1.711;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3823,417,0 chrVIII 144393 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4146,441,0 chrVIII 145315 . G C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4058,427,0 chrVIII 146380 . C A 2106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=165;Dels=0.00;FS=120.400;HaplotypeScore=5.1770;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=1;MQRankSum=6.602;QD=12.76;ReadPosRankSum=-2.866;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:57,108:165:99:2136,0,315 chrVIII 146382 . G A 2080.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;DP=163;Dels=0.00;FS=118.258;HaplotypeScore=3.5996;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=2;MQRankSum=6.266;QD=12.76;ReadPosRankSum=-3.070;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:57,105:163:99:2110,0,300 chrVIII 146397 . A G 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DP=155;Dels=0.00;FS=171.087;HaplotypeScore=2.7156;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=6;MQRankSum=3.165;QD=1.01;ReadPosRankSum=1.464;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,18:155:99:187,0,1979 chrVIII 146400 . A T 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=151;Dels=0.00;FS=169.385;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=6;MQRankSum=2.965;QD=0.91;ReadPosRankSum=1.148;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,19:151:99:168,0,1970 chrVIII 146457 . A G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DP=65;Dels=0.00;FS=20.604;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=25;MQRankSum=0.389;QD=0.35;ReadPosRankSum=-1.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,9:65:53:53,0,372 chrVIII 146560 . A C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;DP=108;Dels=0.00;FS=128.319;HaplotypeScore=4.8781;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=20;MQRankSum=-1.759;QD=0.51;ReadPosRankSum=0.084;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:92,15:108:85:85,0,1765 chrVIII 146569 . G A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;DP=107;Dels=0.00;FS=139.173;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=19;MQRankSum=-1.996;QD=0.62;ReadPosRankSum=0.562;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:89,17:107:96:96,0,1583 chrVIII 146588 . G C 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DP=105;Dels=0.00;FS=113.241;HaplotypeScore=3.9941;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=21;MQRankSum=-1.968;QD=1.05;ReadPosRankSum=2.141;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:87,17:105:99:140,0,1445 chrVIII 146822 . C A 1451 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.98;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1484,156,0 chrVIII 149077 . C T 850 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:883,90,0 chrVIII 149347 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=26.80;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4476,457,0 chrVIII 149511 . A C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.15;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4097,438,0 chrVIII 149519 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=23.65;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4233,430,0 chrVIII 149564 . A C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1867;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.984;QD=20.64;ReadPosRankSum=2.389;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3323,348,0 chrVIII 149577 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=154;Dels=0.00;FS=2.551;HaplotypeScore=9.0773;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-0.375;QD=19.28;ReadPosRankSum=2.941;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3002,315,0 chrVIII 149614 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=4.459;HaplotypeScore=7.3357;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.603;QD=19.22;ReadPosRankSum=1.706;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2609,276,0 chrVIII 149622 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-1.128;QD=19.48;ReadPosRankSum=1.680;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2605,279,0 chrVIII 149665 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.85;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3026,307,0 chrVIII 149706 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.58;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2933,300,0 chrVIII 149795 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.942;QD=26.63;ReadPosRankSum=1.707;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3622,367,0 chrVIII 149856 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=25.74;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3861,391,0 chrVIII 149906 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=25.70;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3547,364,0 chrVIII 149951 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=6.178;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.869;QD=20.41;ReadPosRankSum=2.379;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2911,312,0 chrVIII 149962 . A G 3034 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.92;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3067,330,0 chrVIII 150051 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=17.99;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2551,267,0 chrVIII 150079 . G A 1862 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=13.40;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1895,198,0 chrVIII 150081 . A G 1890 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=13.80;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1923,201,0 chrVIII 150083 . C T 1934 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;QD=14.12;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1967,201,0 chrVIII 150086 . G A 1932 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=12.46;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:1965,204,0 chrVIII 150136 . C G 2842 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=14.35;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:2875,309,0 chrVIII 150142 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=8.238;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;MQRankSum=1.197;QD=14.98;ReadPosRankSum=2.425;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3014,327,0 chrVIII 150182 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=18.78;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3056,330,0 chrVIII 150232 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=23.69;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2781,297,0 chrVIII 150248 . G T 2648 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=22.63;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2681,285,0 chrVIII 150338 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=24.39;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3585,375,0 chrVIII 150392 . A T 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.387;QD=21.92;ReadPosRankSum=2.364;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1918,210,0 chrVIII 150421 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=23.88;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1991,216,0 chrVIII 150444 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=23.37;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1809,195,0 chrVIII 150470 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=-1.773;QD=20.32;ReadPosRankSum=2.371;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1293,141,0 chrVIII 150476 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=22.08;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1380,141,0 chrVIII 150582 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.78;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1477,150,0 chrVIII 150619 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.21;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1308,132,0 chrVIII 150639 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.99;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1592,165,0 chrVIII 150723 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.34;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2974,324,0 chrVIII 150802 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.75;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3812,400,0 chrVIII 150919 . G T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6626;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.24;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4170,444,0 chrVIII 151003 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=184;Dels=0.00;FS=2.934;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.408;QD=24.12;ReadPosRankSum=2.423;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4438,469,0 chrVIII 151118 . C G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3873,406,0 chrVIII 151171 . T G 3842.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.32;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3842,391,0 chrVIII 151416 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.7978;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.492;QD=21.14;ReadPosRankSum=1.696;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2041,225,0 chrVIII 151599 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=2.661;HaplotypeScore=8.0789;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.305;QD=22.18;ReadPosRankSum=2.418;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3482,361,0 chrVIII 151640 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.25;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3715,385,0 chrVIII 151733 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=152;Dels=0.00;FS=4.023;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.104;QD=23.85;ReadPosRankSum=1.639;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3625,387,0 chrVIII 151824 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1161;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.480;QD=22.32;ReadPosRankSum=1.709;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3415,366,0 chrVIII 152094 . A C 2190 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.33;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2223,231,0 chrVIII 152121 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.84;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2086,228,0 chrVIII 152274 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.11;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2469,255,0 chrVIII 152397 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.48;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2530,261,0 chrVIII 152625 . T C 1875 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.67;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1908,201,0 chrVIII 152677 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=25.15;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2271,231,0 chrVIII 152692 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.847;HaplotypeScore=5.0075;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.625;QD=24.09;ReadPosRankSum=1.696;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2394,243,0 chrVIII 152769 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.64;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2870,306,0 chrVIII 152802 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.375;QD=23.21;ReadPosRankSum=1.703;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2818,291,0 chrVIII 152925 . T C 2904 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=25.03;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2937,295,0 chrVIII 152944 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.97;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2604,270,0 chrVIII 152946 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.90;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2478,261,0 chrVIII 153195 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.55;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2733,288,0 chrVIII 153282 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2731,309,0 chrVIII 153442 . G A 4736.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4736,484,0 chrVIII 153651 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.30;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4107,418,0 chrVIII 153731 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=176;Dels=0.00;FS=8.681;HaplotypeScore=14.8025;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.959;QD=21.63;ReadPosRankSum=2.293;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3806,417,0 chrVIII 153963 . A G 3057 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.07;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3090,333,0 chrVIII 154167 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.72;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2239,237,0 chrVIII 154199 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=6.584;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.527;QD=22.45;ReadPosRankSum=2.402;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2390,252,0 chrVIII 154225 . T C 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=7.305;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.290;QD=20.24;ReadPosRankSum=2.403;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2178,228,0 chrVIII 154229 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.09;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2114,225,0 chrVIII 154554 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=24.18;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2282,240,0 chrVIII 154571 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.65;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2114,213,0 chrVIII 154608 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.895;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.091;QD=23.59;ReadPosRankSum=-1.140;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1826,192,0 chrVIII 154677 . T A 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.500;QD=25.79;ReadPosRankSum=1.699;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2715,282,0 chrVIII 154733 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3362;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.100;QD=21.66;ReadPosRankSum=0.275;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2762,282,0 chrVIII 154746 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.04;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2722,276,0 chrVIII 155087 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.92;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2353,243,0 chrVIII 155157 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.65;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2398,243,0 chrVIII 155175 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=109;Dels=0.00;FS=9.166;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.814;QD=21.14;ReadPosRankSum=3.296;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:2337,252,0 chrVIII 155186 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.09;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2573,261,0 chrVIII 155332 . G T 2391 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2424,255,0 chrVIII 155521 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.534;QD=22.48;ReadPosRankSum=1.699;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2416,255,0 chrVIII 155587 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.53;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2854,294,0 chrVIII 155635 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2928,297,0 chrVIII 155994 . G T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.12;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4179,439,0 chrVIII 156096 . A C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.06;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3709,388,0 chrVIII 156276 . C A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9905;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.67;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3389,351,0 chrVIII 156307 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.43;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2940,312,0 chrVIII 156420 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.358;QD=23.55;ReadPosRankSum=1.675;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2953,315,0 chrVIII 156477 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.017;QD=22.95;ReadPosRankSum=1.677;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2948,321,0 chrVIII 156690 . A C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.245;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.820;QD=23.58;ReadPosRankSum=1.706;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3169,318,0 chrVIII 156698 . T G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.4791;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.49;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3335,343,0 chrVIII 156724 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.74;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3148,322,0 chrVIII 156924 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=25.22;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2227,234,0 chrVIII 157305 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.77;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1578,165,0 chrVIII 157424 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.10;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1442,153,0 chrVIII 157495 . T A 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.443;QD=15.83;ReadPosRankSum=1.750;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:83:872,83,0 chrVIII 157497 . A T 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DP=52;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.199;QD=17.52;ReadPosRankSum=1.066;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:90:944,90,0 chrVIII 157616 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.20;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1582,165,0 chrVIII 157807 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9016;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.23;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3658,390,0 chrVIII 158014 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.1145;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.58;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4674,501,0 chrVIII 158092 . G T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.15;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4463,486,0 chrVIII 158374 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=174;Dels=0.00;FS=2.851;HaplotypeScore=8.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.939;QD=23.57;ReadPosRankSum=2.421;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4101,424,0 chrVIII 158566 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2715,279,0 chrVIII 158962 . G C 4938.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.4848;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.97;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4938,505,0 chrVIII 159238 . T G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=223;Dels=0.00;FS=8.008;HaplotypeScore=17.1112;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.853;QD=21.74;ReadPosRankSum=2.406;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4847,522,0 chrVIII 159377 . T A 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.284;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.394;QD=25.45;ReadPosRankSum=1.669;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4174,433,0 chrVIII 159599 . G A 4974.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.57;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4974,529,0 chrVIII 159758 . T C 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=3.023;HaplotypeScore=14.4049;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.107;QD=22.08;ReadPosRankSum=2.393;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4836,519,0 chrVIII 159848 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.5097;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.19;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5101,541,0 chrVIII 159887 . A C 5889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=253;Dels=0.00;FS=9.945;HaplotypeScore=18.4851;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.566;QD=23.28;ReadPosRankSum=2.861;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:3,249:253:99:5889,639,0 chrVIII 159950 . G T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.78;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4572,486,0 chrVIII 159962 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.70;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4038,415,0 chrVIII 160136 . T C 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=223;Dels=0.00;FS=5.257;HaplotypeScore=24.6915;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.389;QD=20.81;ReadPosRankSum=2.941;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:4641,498,0 chrVIII 160596 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=179;Dels=0.00;FS=12.013;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.528;QD=22.61;ReadPosRankSum=2.960;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:4047,438,0 chrVIII 160876 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.50;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3700,379,0 chrVIII 161504 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1194,120,0 chrVIII 161715 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.36;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1410,147,0 chrVIII 161791 . G T 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=11.8693;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-0.127;QD=2.67;ReadPosRankSum=-3.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,23:51:99:166,0,365 chrVIII 161994 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.68;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4615,478,0 chrVIII 162108 . A G 5573.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.03;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5573,621,0 chrVIII 162618 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=202;Dels=0.00;FS=3.000;HaplotypeScore=6.4362;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.870;QD=21.52;ReadPosRankSum=2.425;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:2,197:202:99:4348,471,0 chrVIII 162628 . C T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.0272;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.39;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4545,466,0 chrVIII 162837 . G A 5592.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.21;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5592,574,0 chrVIII 162897 . T C 5856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=251;Dels=0.00;FS=2.990;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.412;QD=23.33;ReadPosRankSum=2.410;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:2,245:251:99:5856,636,0 chrVIII 163422 . G C 3076 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.96;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3109,324,0 chrVIII 163476 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.078;DP=147;Dels=0.00;FS=14.865;HaplotypeScore=12.0040;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.437;QD=20.39;ReadPosRankSum=5.218;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:10,137:147:99:3030,327,0 chrVIII 163571 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2877,292,0 chrVIII 163731 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3637,376,0 chrVIII 164274 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.035;QD=24.42;ReadPosRankSum=1.687;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3760,405,0 chrVIII 164380 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=2.945;HaplotypeScore=8.2617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.234;QD=25.29;ReadPosRankSum=2.379;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4376,474,0 chrVIII 164613 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.17;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3650,379,0 chrVIII 164807 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=23.57;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2744,288,0 chrVIII 164863 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=16.77;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2046,222,0 chrVIII 164870 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=17.28;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1934,198,0 chrVIII 164881 . C A 1575 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=15.75;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1608,165,0 chrVIII 164891 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=-1.571;QD=13.41;ReadPosRankSum=1.692;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1186,123,0 chrVIII 164893 . A G 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=89;Dels=0.00;FS=2.976;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;MQRankSum=-0.072;QD=12.07;ReadPosRankSum=2.393;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,84:89:99:1107,120,0 chrVIII 164927 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=18.48;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1456,147,0 chrVIII 164952 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.61;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2136,228,0 chrVIII 165142 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.96;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3064,310,0 chrVIII 165143 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.69;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3119,316,0 chrVIII 165566 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.622;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-0.227;QD=16.96;ReadPosRankSum=1.697;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1712,186,0 chrVIII 165572 . G T 1711 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=16.77;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1744,174,0 chrVIII 165588 . A G 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.622;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=-1.242;QD=15.19;ReadPosRankSum=1.697;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1537,162,0 chrVIII 165608 . G T 1666 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=15.57;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1699,174,0 chrVIII 165698 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=20.44;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2690,291,0 chrVIII 165710 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.506;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=-0.123;QD=19.11;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2498,264,0 chrVIII 165727 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=17.84;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2103,216,0 chrVIII 165734 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=16.70;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2020,210,0 chrVIII 165835 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.08;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2872,309,0 chrVIII 165867 . T G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.447;QD=25.58;ReadPosRankSum=1.704;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3256,334,0 chrVIII 165986 . A G 3139 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.50;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3172,345,0 chrVIII 165995 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=3.979;HaplotypeScore=7.3919;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.947;QD=20.10;ReadPosRankSum=1.709;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3048,315,0 chrVIII 166046 . A C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.138;QD=18.43;ReadPosRankSum=2.417;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2835,309,0 chrVIII 166130 . C A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7933;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3631,379,0 chrVIII 166209 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.29;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4248,439,0 chrVIII 166367 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.99;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3954,420,0 chrVIII 166391 . G T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.22;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3657,376,0 chrVIII 166445 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.73;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3034,321,0 chrVIII 166541 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.51;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4608,498,0 chrVIII 166793 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.275;QD=23.11;ReadPosRankSum=1.684;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3374,360,0 chrVIII 166812 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=159;Dels=0.00;FS=3.024;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.149;QD=21.81;ReadPosRankSum=2.387;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3468,366,0 chrVIII 166940 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.380;QD=24.14;ReadPosRankSum=1.644;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2930,303,0 chrVIII 166991 . A C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.16;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3383,363,0 chrVIII 167096 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3662,382,0 chrVIII 167453 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=20.48;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1712,177,0 chrVIII 167475 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.54;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1401,144,0 chrVIII 167487 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.35;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1132,114,0 chrVIII 167512 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=18.04;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,50:52:99:971,99,0 chrVIII 167543 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=19.88;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1325,132,0 chrVIII 167557 . T A 1062 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=51.8813;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=18.00;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1095,114,0 chrVIII 167575 . G T 891 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.47;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:924,96,0 chrVIII 167580 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.08;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:901,93,0 chrVIII 167593 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.34;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:710,75,0 chrVIII 167656 . T C 228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.483;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9852;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;MQRankSum=-1.964;QD=9.12;ReadPosRankSum=3.076;SB=-5.602e+01 GT:AD:DP:GQ:PL 1/1:4,21:25:27:261,27,0 chrVIII 167671 . A G 585 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=16.25;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:66:618,66,0 chrVIII 167797 . A G 1283 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.33;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1316,150,0 chrVIII 167848 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=25.66;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2496,258,0 chrVIII 167910 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=23.04;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2982,306,0 chrVIII 167923 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.58;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3004,306,0 chrVIII 167968 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.68;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2946,309,0 chrVIII 168253 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.59;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2984,304,0 chrVIII 168433 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.81;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2519,276,0 chrVIII 168439 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.14;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2694,282,0 chrVIII 168732 . G T 609 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.65;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:642,69,0 chrVIII 168804 . G A 428 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.12;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,23:25:48:461,48,0 chrVIII 169202 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=264;Dels=0.02;FS=1.624;HaplotypeScore=102.3342;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=3.609;QD=13.39;ReadPosRankSum=-7.855;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:28,230:258:99:3536,341,0 chrVIII 169214 . C T 752.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DP=258;Dels=0.00;FS=0.504;HaplotypeScore=27.0360;MLEAC=1;MLEAF=0.500;MQ=49.31;MQ0=0;MQRankSum=-0.230;QD=2.91;ReadPosRankSum=-11.246;SB=-5.650e+02 GT:AD:DP:GQ:PL 0/1:182,75:258:99:782,0,1773 chrVIII 169586 . T A 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.741;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.415;QD=23.94;ReadPosRankSum=1.708;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3400,352,0 chrVIII 169760 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7487;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.730;QD=20.68;ReadPosRankSum=-0.530;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2535,267,0 chrVIII 169769 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.50;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2505,258,0 chrVIII 169868 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3794,402,0 chrVIII 170595 . C T 730 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=61.22;MQ0=0;QD=21.47;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:763,78,0 chrVIII 170680 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=24.69;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1366,144,0 chrVIII 170740 . C G 1583 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.95;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1616,171,0 chrVIII 171171 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=3.018;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.385;QD=23.65;ReadPosRankSum=2.362;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4020,438,0 chrVIII 171273 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.43;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3521,364,0 chrVIII 171279 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.59;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3439,369,0 chrVIII 171537 . A C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.515;DP=140;Dels=0.00;FS=2.117;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.935;QD=25.29;ReadPosRankSum=1.674;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3540,338,0 chrVIII 171564 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.97;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3571,369,0 chrVIII 171761 . G T 2776 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2809,297,0 chrVIII 172443 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3588,378,0 chrVIII 172560 . G T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.41;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3887,408,0 chrVIII 172608 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.64;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3819,408,0 chrVIII 172701 . C T 5174.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.52;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5174,535,0 chrVIII 172808 . T C 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.019;QD=23.30;ReadPosRankSum=1.699;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4917,525,0 chrVIII 172837 . C G 4768.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.08;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4768,502,0 chrVIII 172909 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.0740;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.71;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4992,523,0 chrVIII 173105 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=54.1294;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.41;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1605,168,0 chrVIII 173130 . A T 10.46 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=80.6199;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=-2.005;QD=0.34;ReadPosRankSum=-2.420;SB=-2.050e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:17:40,0,17 chrVIII 173207 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.86;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1284,141,0 chrVIII 173271 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.53;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2339,243,0 chrVIII 173295 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.18;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2792,280,0 chrVIII 173412 . G A 6409.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.53;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:6409,643,0 chrVIII 173562 . G A 7337.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=16.7426;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.51;SB=-4.095e+03 GT:AD:DP:GQ:PL 1/1:0,323:326:99:7337,798,0 chrVIII 173637 . G T 7867.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=20.6746;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.21;SB=-4.260e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:7867,802,0 chrVIII 173923 . T G 7997.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=12.6583;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.87;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:7997,882,0 chrVIII 174093 . T C 9099.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=397;Dels=0.00;FS=11.028;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.246;QD=22.92;ReadPosRankSum=2.896;SB=-4.666e+03 GT:AD:DP:GQ:PL 1/1:3,392:397:99:9099,985,0 chrVIII 174120 . A C 8615.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=401;Dels=0.00;FS=5.682;HaplotypeScore=20.5028;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.251;QD=21.48;ReadPosRankSum=2.825;SB=-4.620e+03 GT:AD:DP:GQ:PL 1/1:3,393:401:99:8615,907,0 chrVIII 174165 . A C 9189.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=419;Dels=0.00;FS=2.968;HaplotypeScore=29.9517;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.331;QD=21.93;ReadPosRankSum=2.414;SB=-5.084e+03 GT:AD:DP:GQ:PL 1/1:2,416:419:99:9189,979,0 chrVIII 175012 . C T 8686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=346;Dels=0.00;FS=3.503;HaplotypeScore=23.8752;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.196;QD=25.10;ReadPosRankSum=1.431;SB=-4.313e+03 GT:AD:DP:GQ:PL 1/1:1,344:346:99:8686,883,0 chrVIII 175141 . T C 6906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=330;Dels=0.00;FS=11.819;HaplotypeScore=26.1452;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.116;QD=20.93;ReadPosRankSum=2.924;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:3,325:330:99:6906,753,0 chrVIII 175263 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.2491;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.62;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3891,400,0 chrVIII 175480 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.13;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2489,261,0 chrVIII 175661 . T C 9467.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=27.6443;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.73;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,367:368:99:9467,991,0 chrVIII 175731 . A C 8598.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=465;Dels=0.01;FS=9.675;HaplotypeScore=18.6851;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.954;QD=18.49;ReadPosRankSum=2.796;SB=-5.616e+03 GT:AD:DP:GQ:PL 1/1:3,454:462:99:8598,928,0 chrVIII 175734 . A C 8928.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=465;Dels=0.00;FS=6.577;HaplotypeScore=22.5142;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.346;QD=19.20;ReadPosRankSum=2.434;SB=-6.017e+03 GT:AD:DP:GQ:PL 1/1:2,458:465:99:8928,943,0 chrVIII 176426 . A G 6571.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=15.6779;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.83;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6571,697,0 chrVIII 176679 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.53;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2896,318,0 chrVIII 176826 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.12;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1356,141,0 chrVIII 177049 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=25.58;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2412,255,0 chrVIII 177113 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.64;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2537,267,0 chrVIII 177333 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.1581;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.02;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4212,442,0 chrVIII 177610 . T C 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=287;Dels=0.00;FS=2.005;HaplotypeScore=11.8532;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.477;QD=17.07;ReadPosRankSum=0.797;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:4,279:287:99:4899,518,0 chrVIII 177619 . A C 5771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=292;Dels=0.00;FS=3.272;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.196;QD=19.76;ReadPosRankSum=1.708;SB=-3.805e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:5771,598,0 chrVIII 177793 . C G 6206.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.6101;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.96;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6206,637,0 chrVIII 177867 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=189;Dels=0.00;FS=2.908;HaplotypeScore=22.3309;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.412;QD=21.84;ReadPosRankSum=2.345;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4128,438,0 chrVIII 178041 . G T 2285 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.3002;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.59;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2318,237,0 chrVIII 178104 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=24.49;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1845,189,0 chrVIII 178121 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=20.81;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1635,171,0 chrVIII 178125 . A G 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-1.140;QD=19.99;ReadPosRankSum=1.687;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1592,165,0 chrVIII 178134 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.10;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1763,186,0 chrVIII 178196 . C A 2459 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.87;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2492,261,0 chrVIII 178230 . A G 2316 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.06;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2349,261,0 chrVIII 178242 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.98;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2451,264,0 chrVIII 178458 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.659;QD=25.65;ReadPosRankSum=1.687;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3976,409,0 chrVIII 178619 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.08;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2710,282,0 chrVIII 178632 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=121;Dels=0.00;FS=4.897;HaplotypeScore=2.6786;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.022;QD=20.13;ReadPosRankSum=3.770;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:5,116:121:99:2469,267,0 chrVIII 178659 . A T 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.689;QD=19.07;ReadPosRankSum=1.665;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1997,204,0 chrVIII 178672 . A G 1692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.083;QD=17.44;ReadPosRankSum=1.660;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1725,183,0 chrVIII 178799 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.49;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3429,366,0 chrVIII 178843 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=26.18;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3044,310,0 chrVIII 178873 . T A 2522 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=24.73;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2555,255,0 chrVIII 178909 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1622;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.72;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2737,279,0 chrVIII 179026 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.20;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2817,294,0 chrVIII 179071 . T A 3015 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=24.12;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3048,310,0 chrVIII 179085 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.58;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2855,300,0 chrVIII 179142 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9690;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.08;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2101,219,0 chrVIII 179241 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.13;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3281,348,0 chrVIII 179265 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.44;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3593,373,0 chrVIII 179402 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.02;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3095,342,0 chrVIII 179572 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=136;Dels=0.00;FS=6.383;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.284;QD=23.73;ReadPosRankSum=2.340;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3260,345,0 chrVIII 179748 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.07;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3785,388,0 chrVIII 179923 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.22;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3960,403,0 chrVIII 180100 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=24.79;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3421,363,0 chrVIII 180223 . T A 2981 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3014,309,0 chrVIII 180918 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.743;DP=251;Dels=0.00;FS=7.959;HaplotypeScore=13.4351;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.397;QD=19.61;ReadPosRankSum=3.680;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:5,246:251:99:4921,534,0 chrVIII 181049 . G A 4890.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.74;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4890,499,0 chrVIII 181082 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.042;QD=22.42;ReadPosRankSum=1.701;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4978,540,0 chrVIII 181124 . T G 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=182;Dels=0.00;FS=6.490;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.007;QD=21.41;ReadPosRankSum=2.409;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3897,409,0 chrVIII 181132 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=180;Dels=0.00;FS=6.053;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.257;QD=21.24;ReadPosRankSum=2.950;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3824,400,0 chrVIII 181265 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=183;Dels=0.00;FS=5.918;HaplotypeScore=17.8199;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.906;QD=22.37;ReadPosRankSum=2.906;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4094,447,0 chrVIII 181842 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.8413;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.21;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3967,426,0 chrVIII 182092 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.426;QD=24.54;ReadPosRankSum=2.319;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2806,297,0 chrVIII 182852 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.451;QD=26.34;ReadPosRankSum=1.689;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4241,448,0 chrVIII 183402 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3422,360,0 chrVIII 183482 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.746;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.732;QD=24.60;ReadPosRankSum=1.642;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3789,399,0 chrVIII 183593 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.50;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3332,343,0 chrVIII 183721 . T C 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=9.843;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=1.260;QD=22.44;ReadPosRankSum=2.394;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:2053,219,0 chrVIII 183728 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=23.97;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2142,222,0 chrVIII 183741 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=23.20;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2075,213,0 chrVIII 183744 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=21.49;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1924,207,0 chrVIII 183845 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.421;QD=25.51;ReadPosRankSum=1.643;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:2048,219,0 chrVIII 183913 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.23;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1689,177,0 chrVIII 183923 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.042;QD=20.59;ReadPosRankSum=1.648;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1721,183,0 chrVIII 184025 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=18.6982;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.33;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2087,222,0 chrVIII 184065 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=112;Dels=0.00;FS=6.087;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.118;QD=22.89;ReadPosRankSum=2.937;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2597,276,0 chrVIII 184104 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.50;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2283,252,0 chrVIII 184171 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.34;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1865,195,0 chrVIII 184258 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.742;QD=24.02;ReadPosRankSum=1.694;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2243,240,0 chrVIII 184281 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.14;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2206,231,0 chrVIII 184323 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.08;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2465,261,0 chrVIII 184572 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.495;QD=24.09;ReadPosRankSum=1.705;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3068,321,0 chrVIII 184766 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.51;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1185,123,0 chrVIII 184847 . A G 814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=5.563;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.155;QD=22.61;ReadPosRankSum=1.636;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:87:847,87,0 chrVIII 184872 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.67;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1225,132,0 chrVIII 185022 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.83;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2362,261,0 chrVIII 185064 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.45;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4301,459,0 chrVIII 185403 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5041,511,0 chrVIII 185480 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4301,445,0 chrVIII 185547 . C T 4807.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.9019;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.65;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4807,496,0 chrVIII 185766 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.86;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4366,483,0 chrVIII 186657 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.12;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4179,433,0 chrVIII 186876 . C T 651 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.60;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:72:684,72,0 chrVIII 186921 . G A 261 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.75;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:294,30,0 chrVIII 187320 . A C 2404 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.31;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2437,255,0 chrVIII 187527 . T A 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=174;Dels=0.00;FS=3.035;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.897;QD=25.18;ReadPosRankSum=2.407;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4382,445,0 chrVIII 187908 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=160.3832;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.01;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3887,429,0 chrVIII 188673 . C A 5466.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=18.1215;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.77;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5466,565,0 chrVIII 188821 . C T 6658.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=24.30;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6658,688,0 chrVIII 188841 . A G 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=271;Dels=0.00;FS=13.699;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.186;QD=19.79;ReadPosRankSum=2.937;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:5364,579,0 chrVIII 188853 . G A 5281.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.5288;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.53;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:5281,535,0 chrVIII 189054 . T C 5718.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=19.3749;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.28;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5718,613,0 chrVIII 189143 . A G 5477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=273;Dels=0.00;FS=3.869;HaplotypeScore=20.4630;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.123;QD=20.06;ReadPosRankSum=1.669;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:5477,562,0 chrVIII 189221 . C G 5877.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.6740;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.19;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:5877,619,0 chrVIII 189356 . G A 6885.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=20.6042;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.72;SB=-3.635e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:6885,712,0 chrVIII 189608 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.741;DP=213;Dels=0.00;FS=7.911;HaplotypeScore=18.1110;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.371;QD=21.35;ReadPosRankSum=3.763;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:5,208:213:99:4547,498,0 chrVIII 190024 . C T 5501.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.5821;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.13;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5501,562,0 chrVIII 190064 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=243;Dels=0.00;FS=5.155;HaplotypeScore=25.6670;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.186;QD=22.17;ReadPosRankSum=3.351;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:4,235:243:99:5387,582,0 chrVIII 190671 . C T 6731.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=19.3652;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.66;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6731,715,0 chrVIII 190872 . A T 5299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=233;Dels=0.00;FS=2.626;HaplotypeScore=20.1610;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.492;QD=22.74;ReadPosRankSum=2.428;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5299,541,0 chrVIII 191072 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=184;Dels=0.00;FS=8.149;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.109;QD=23.51;ReadPosRankSum=3.365;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4326,445,0 chrVIII 191248 . A G 5607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=3.841;HaplotypeScore=15.8420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.045;QD=22.61;ReadPosRankSum=1.690;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5607,621,0 chrVIII 191348 . A T 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=248;Dels=0.00;FS=3.025;HaplotypeScore=19.5438;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.045;QD=21.71;ReadPosRankSum=2.380;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5384,553,0 chrVIII 191643 . C A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.3727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4223,433,0 chrVIII 191691 . C T 4718.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.90;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4718,507,0 chrVIII 192124 . T C 6841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=294;Dels=0.00;FS=2.566;HaplotypeScore=20.9442;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.311;QD=23.27;ReadPosRankSum=2.922;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:3,291:294:99:6841,724,0 chrVIII 192454 . G A 5740.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.29;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5740,592,0 chrVIII 192892 . C T 2753 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=21;QD=21.02;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2786,294,0 chrVIII 192973 . G A 3618.01 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=8;QD=20.91;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3618,384,0 chrVIII 193075 . G A 1442 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=37;QD=11.18;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1475,153,0 chrVIII 193114 . T C 1253 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=29;QD=10.71;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1286,135,0 chrVIII 193183 . T G 2119 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=7;QD=20.37;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2152,225,0 chrVIII 193245 . C T 1702 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=12;QD=15.76;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1735,180,0 chrVIII 193408 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;QD=24.23;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1317,132,0 chrVIII 193417 . G A 858 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=22.00;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:891,99,0 chrVIII 193426 . A G 394 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=17.91;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:51:427,51,0 chrVIII 193427 . A G 307 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=16.16;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:42:340,42,0 chrVIII 193428 . C A 310 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=16.32;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:42:343,42,0 chrVIII 193438 . C A 188 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=13.43;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:221,30,0 chrVIII 194167 . T A 196.03 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=13.53;MQ0=29;QD=5.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:24:229,24,0 chrVIII 194191 . G A 178.03 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.85;MQ0=27;QD=4.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:24:211,24,0 chrVIII 194446 . T G 77.51 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.27;MQ0=11;QD=4.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:110,12,0 chrVIII 194508 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.14;MQ0=20;QD=0.80;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:6:52,6,0 chrVIII 194619 . C T 94.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=4.10;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:127,15,0 chrVIII 194620 . A G 106.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=4.62;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:139,15,0 chrVIII 194646 . A T 168.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=4.20;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:201,21,0 chrVIII 194647 . A C 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=3.80;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:185,21,0 chrVIII 194649 . C T 166.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=4.15;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:199,21,0 chrVIII 194650 . C T 174.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=4.05;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:21:207,21,0 chrVIII 194658 . T A 392 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=4.04;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:45:425,45,0 chrVIII 196135 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.66;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4882,517,0 chrVIII 196160 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.56;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4217,447,0 chrVIII 196468 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=7.193;HaplotypeScore=15.3707;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.499;QD=24.53;ReadPosRankSum=2.402;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3802,402,0 chrVIII 196532 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=3.024;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.104;QD=25.07;ReadPosRankSum=2.417;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3836,403,0 chrVIII 196732 . T C 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.332;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.569;QD=18.11;ReadPosRankSum=1.683;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2587,279,0 chrVIII 196831 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3469,366,0 chrVIII 197974 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.62;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2815,285,0 chrVIII 198244 . T A 2743 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.06;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2776,282,0 chrVIII 198394 . G C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.59;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3492,384,0 chrVIII 198549 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=2.757;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.765;QD=20.91;ReadPosRankSum=2.237;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2709,282,0 chrVIII 198648 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=144;Dels=0.00;FS=9.133;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.319;QD=23.72;ReadPosRankSum=3.301;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3415,357,0 chrVIII 201705 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.98;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2531,261,0 chrVIII 201817 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.25;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2073,210,0 chrVIII 201877 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=26.24;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2316,234,0 chrVIII 202037 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.05;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2370,255,0 chrVIII 202048 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.99;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2236,240,0 chrVIII 202143 . T G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.277;QD=19.54;ReadPosRankSum=1.656;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2749,303,0 chrVIII 202145 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.61;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2877,300,0 chrVIII 202307 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.37;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4240,433,0 chrVIII 202480 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=148;Dels=0.00;FS=5.179;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.299;QD=20.37;ReadPosRankSum=1.613;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3048,330,0 chrVIII 202550 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.99;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2864,294,0 chrVIII 202635 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.437;QD=25.78;ReadPosRankSum=1.704;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3204,333,0 chrVIII 202737 . A C 2924 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.21;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2957,318,0 chrVIII 202757 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.32;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3073,313,0 chrVIII 202824 . A T 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.73;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,285,0 chrVIII 202861 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.47;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3140,322,0 chrVIII 202937 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=9.6612;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.64;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3211,333,0 chrVIII 203086 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.3770;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.164;QD=24.96;ReadPosRankSum=1.662;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3694,382,0 chrVIII 203151 . A G 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.895;QD=25.47;ReadPosRankSum=1.693;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4560,486,0 chrVIII 203186 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=25.19;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4207,427,0 chrVIII 203203 . A T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.2294;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=23.67;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3977,412,0 chrVIII 203233 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=19.83;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3272,339,0 chrVIII 203255 . T G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.995;QD=15.48;ReadPosRankSum=2.419;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:2588,273,0 chrVIII 203274 . C A 2599 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=16.35;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2632,270,0 chrVIII 203292 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=14.13;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2153,225,0 chrVIII 203300 . C G 2040 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=13.51;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2073,222,0 chrVIII 203310 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=13.94;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1985,207,0 chrVIII 203446 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=25.43;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4068,429,0 chrVIII 203456 . C G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=25.40;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3531,369,0 chrVIII 203641 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.277;QD=23.63;ReadPosRankSum=1.703;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2845,309,0 chrVIII 203815 . T A 2962 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.10;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2995,304,0 chrVIII 203883 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.84;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2107,213,0 chrVIII 203922 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.16;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1870,195,0 chrVIII 204071 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.81;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2953,303,0 chrVIII 204086 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6423;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.43;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2938,300,0 chrVIII 204117 . A T 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=6.744;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.555;QD=22.75;ReadPosRankSum=2.375;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3036,312,0 chrVIII 204203 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3525,372,0 chrVIII 204693 . A T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.1717;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.92;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5234,541,0 chrVIII 204882 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.64;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5345,541,0 chrVIII 205191 . A C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.108;HaplotypeScore=17.9917;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.328;QD=23.66;ReadPosRankSum=1.713;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4258,462,0 chrVIII 205278 . A T 2899 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2932,309,0 chrVIII 205476 . C A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3859,414,0 chrVIII 205596 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.052;QD=23.30;ReadPosRankSum=1.711;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3915,426,0 chrVIII 205795 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.57;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2819,291,0 chrVIII 205821 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.23;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3033,306,0 chrVIII 205941 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=203;Dels=0.00;FS=19.521;HaplotypeScore=14.9121;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.736;QD=22.97;ReadPosRankSum=3.764;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:5,196:203:99:4662,504,0 chrVIII 206031 . A C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.541;HaplotypeScore=8.7486;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.533;QD=24.17;ReadPosRankSum=1.712;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4229,450,0 chrVIII 206103 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.67;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3749,396,0 chrVIII 206460 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2186,225,0 chrVIII 207052 . T A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4070,435,0 chrVIII 207624 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.8579;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3717,388,0 chrVIII 207734 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.4084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4786,490,0 chrVIII 209410 . C A 2390 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2423,264,0 chrVIII 210710 . A T 861 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:93:894,93,0 chrVIII 211462 . T C 4217.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.40;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4217,436,0 chrVIII 211534 . T A 3111 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.57;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3144,339,0 chrVIII 211550 . C G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.56;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3493,358,0 chrVIII 211655 . T G 6598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=286;Dels=0.00;FS=2.974;HaplotypeScore=18.2017;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.400;QD=23.07;ReadPosRankSum=2.389;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:2,283:286:99:6598,682,0 chrVIII 211693 . G A 6442.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=6.0527;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.29;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6442,670,0 chrVIII 211701 . G A 6602.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=14.2023;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.72;SB=-3.555e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:6602,676,0 chrVIII 211825 . G A 6177.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.4548;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.49;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6177,658,0 chrVIII 212243 . C G 2834 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=24.22;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2867,300,0 chrVIII 212536 . C T 80.51 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.37;MQ0=90;QD=0.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:97:12:113,12,0 chrVIII 216123 . C T 1121 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=25;QD=16.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1154,120,0 chrVIII 218189 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=209;Dels=0.00;FS=3.501;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.530;QD=22.70;ReadPosRankSum=1.715;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4745,519,0 chrVIII 218718 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=231;Dels=0.00;FS=2.583;HaplotypeScore=11.5985;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.852;QD=21.33;ReadPosRankSum=2.353;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:4928,534,0 chrVIII 218883 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.09;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2584,264,0 chrVIII 218941 . A G 2809 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2842,294,0 chrVIII 218986 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3655,384,0 chrVIII 219038 . A G 5626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=7.457;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.504;QD=27.31;ReadPosRankSum=1.698;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,205:206:99:5626,595,0 chrVIII 219407 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=209;Dels=0.00;FS=10.074;HaplotypeScore=14.5186;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.716;QD=22.45;ReadPosRankSum=2.851;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4693,516,0 chrVIII 219461 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.22;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3755,382,0 chrVIII 219477 . A C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.34;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3579,378,0 chrVIII 219735 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=25.95;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4204,418,0 chrVIII 219780 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.84;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3481,381,0 chrVIII 219861 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.300;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.084;QD=22.06;ReadPosRankSum=1.704;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2768,294,0 chrVIII 219876 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=18.32;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2378,258,0 chrVIII 219879 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=20.53;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2579,261,0 chrVIII 219926 . T C 1890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;MQRankSum=0.940;QD=17.83;ReadPosRankSum=1.534;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1923,210,0 chrVIII 219929 . A G 1863 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=17.74;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1896,204,0 chrVIII 219934 . T C 2003 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=20.23;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2036,213,0 chrVIII 220015 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.82;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3276,345,0 chrVIII 220140 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-1.102;QD=21.91;ReadPosRankSum=1.675;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2684,273,0 chrVIII 220151 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=22.10;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2707,276,0 chrVIII 220155 . T C 2593 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.08;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2626,279,0 chrVIII 220635 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3247;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.10;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3214,331,0 chrVIII 220853 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6147;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.675;QD=23.93;ReadPosRankSum=0.292;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3685,376,0 chrVIII 221114 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.98;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2891,294,0 chrVIII 221510 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2672,285,0 chrVIII 221591 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3310,360,0 chrVIII 222260 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=154;Dels=0.00;FS=2.896;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.907;QD=24.86;ReadPosRankSum=2.418;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3828,400,0 chrVIII 222295 . T C 4402.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.01;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4402,468,0 chrVIII 222462 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.26;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3216,330,0 chrVIII 222996 . T C 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.3006;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.294;QD=21.89;ReadPosRankSum=1.676;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5385,582,0 chrVIII 223354 . C T 7667.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=17.3462;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.22;SB=-4.232e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7667,793,0 chrVIII 223791 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.62;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2627,273,0 chrVIII 224759 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2080,216,0 chrVIII 224909 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=25.28;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2637,270,0 chrVIII 225074 . T A 3001 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.80;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3034,310,0 chrVIII 225149 . A G 2255 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=22.11;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2288,243,0 chrVIII 225175 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=19.43;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2365,246,0 chrVIII 225196 . T A 2199 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=19.63;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2232,228,0 chrVIII 225210 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=19.40;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1973,198,0 chrVIII 225216 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=18.12;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1791,186,0 chrVIII 225226 . T A 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=5.509;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-0.253;QD=18.24;ReadPosRankSum=1.660;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1802,186,0 chrVIII 225422 . A C 1671 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=24.94;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1704,177,0 chrVIII 225748 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=163;Dels=0.00;FS=12.306;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.265;QD=23.87;ReadPosRankSum=2.920;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3890,408,0 chrVIII 225911 . G C 4898.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.6618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4898,508,0 chrVIII 226158 . C T 6308.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.39;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:6308,670,0 chrVIII 226266 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.87;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5497,571,0 chrVIII 226566 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=210;Dels=0.00;FS=2.881;HaplotypeScore=15.0581;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.226;QD=22.87;ReadPosRankSum=2.426;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4803,514,0 chrVIII 226755 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.42;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4216,439,0 chrVIII 227323 . T G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=3.892;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.555;QD=22.05;ReadPosRankSum=1.661;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2216,234,0 chrVIII 227343 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.36;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2556,267,0 chrVIII 227411 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.25;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2481,261,0 chrVIII 227412 . A T 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=0.079;QD=21.23;ReadPosRankSum=1.700;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2347,255,0 chrVIII 227429 . A G 2222 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.78;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2255,240,0 chrVIII 227444 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.17;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1873,213,0 chrVIII 227519 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.21;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2540,282,0 chrVIII 227951 . A C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.773;QD=20.19;ReadPosRankSum=1.673;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3594,381,0 chrVIII 227964 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.19;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3771,382,0 chrVIII 228006 . G C 4095.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.22;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4095,438,0 chrVIII 228090 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.64;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3044,324,0 chrVIII 228402 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.65;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4155,427,0 chrVIII 228507 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=169;Dels=0.00;FS=4.208;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.501;QD=23.28;ReadPosRankSum=0.083;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3935,386,0 chrVIII 228696 . G C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.94;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3378,366,0 chrVIII 228831 . G C 2583 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=18.85;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2616,291,0 chrVIII 228837 . T C 2415 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=18.58;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2448,264,0 chrVIII 228862 . A G 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=108;Dels=0.00;FS=9.131;HaplotypeScore=2.7666;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;MQRankSum=-1.863;QD=17.11;ReadPosRankSum=3.376;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:1881,204,0 chrVIII 228880 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=18.33;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1829,189,0 chrVIII 228881 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=17.85;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1764,189,0 chrVIII 228903 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=19.16;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1796,189,0 chrVIII 229142 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.64;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1346,144,0 chrVIII 229184 . T A 934 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6953;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=15.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:967,99,0 chrVIII 229265 . G C 1887 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.20;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1920,207,0 chrVIII 229427 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-1.453;QD=25.57;ReadPosRankSum=1.709;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3835,394,0 chrVIII 229448 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=24.92;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4087,427,0 chrVIII 229583 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=161;Dels=0.00;FS=2.287;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-1.669;QD=22.93;ReadPosRankSum=-0.094;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3691,352,0 chrVIII 229613 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;DP=151;Dels=0.00;FS=4.475;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=-2.339;QD=23.51;ReadPosRankSum=1.336;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:4,146:151:99:3550,352,0 chrVIII 229640 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.4620;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.075;QD=24.48;ReadPosRankSum=1.837;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3647,353,0 chrVIII 230087 . A G 3048 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.09;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3081,327,0 chrVIII 230165 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=25.70;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3367,343,0 chrVIII 230196 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.04;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3437,357,0 chrVIII 230282 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=24.9047;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.69;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3753,385,0 chrVIII 230390 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=25.36;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3981,423,0 chrVIII 230432 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=170;Dels=0.00;FS=2.987;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.542;QD=24.57;ReadPosRankSum=2.406;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4177,442,0 chrVIII 230585 . T C 5740.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.1810;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.09;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5740,598,0 chrVIII 230714 . A T 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.750;QD=25.05;ReadPosRankSum=1.639;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4684,487,0 chrVIII 230898 . T G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=13.8637;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.240;QD=24.38;ReadPosRankSum=1.711;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:4047,415,0 chrVIII 230930 . G C 3577.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9765;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.93;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3577,393,0 chrVIII 231163 . C G 3643.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.48;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3643,376,0 chrVIII 231221 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.6474;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.87;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3879,397,0 chrVIII 231290 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.492;QD=22.79;ReadPosRankSum=1.711;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3715,390,0 chrVIII 231411 . T G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3612,387,0 chrVIII 231446 . A C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.698;QD=22.07;ReadPosRankSum=1.706;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2990,330,0 chrVIII 231830 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.569;QD=22.49;ReadPosRankSum=1.699;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2417,246,0 chrVIII 232078 . C A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.91;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3907,397,0 chrVIII 232174 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.26;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4470,460,0 chrVIII 232258 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=192;Dels=0.00;FS=2.919;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.534;QD=24.63;ReadPosRankSum=2.372;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4729,510,0 chrVIII 232321 . T C 5019.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.28;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5019,523,0 chrVIII 232741 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=214;Dels=0.00;FS=14.941;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.479;QD=20.53;ReadPosRankSum=3.321;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:4394,460,0 chrVIII 232747 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.65;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4254,442,0 chrVIII 233140 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=5.245;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.896;QD=21.15;ReadPosRankSum=1.692;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3701,402,0 chrVIII 233357 . A C 585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=2.906;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.575;QD=14.27;ReadPosRankSum=2.149;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:69:618,69,0 chrVIII 233361 . G A 557 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=15.05;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:590,63,0 chrVIII 233475 . T A 2473 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.76;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2506,258,0 chrVIII 233495 . C A 2080 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=23.11;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2113,219,0 chrVIII 233526 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-1.443;QD=15.40;ReadPosRankSum=2.397;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1465,162,0 chrVIII 233542 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=13.18;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1338,141,0 chrVIII 233556 . A C 1479 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=13.82;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1512,159,0 chrVIII 233563 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=13.20;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1604,168,0 chrVIII 233575 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=15.02;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2106,216,0 chrVIII 233885 . T C 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=208;Dels=0.00;FS=3.596;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.379;QD=24.70;ReadPosRankSum=1.682;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:5137,523,0 chrVIII 234380 . C T 5470.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5470,565,0 chrVIII 234638 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.2695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3653,393,0 chrVIII 234687 . A T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.41;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3451,363,0 chrVIII 235081 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.654;QD=23.54;ReadPosRankSum=2.159;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4379,459,0 chrVIII 235096 . G A 4018.01 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.96;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4018,409,0 chrVIII 235097 . G A 3980.01 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.63;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3980,409,0 chrVIII 235099 . G T 3867.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.25;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3867,403,0 chrVIII 235522 . C T 6813.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=14.4627;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.74;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6813,706,0 chrVIII 235729 . T C 6969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=301;Dels=0.00;FS=3.015;HaplotypeScore=20.1860;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.511;QD=23.15;ReadPosRankSum=2.425;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:2,296:301:99:6969,748,0 chrVIII 235973 . T G 6052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=311;Dels=0.00;FS=3.000;HaplotypeScore=28.6312;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.583;QD=19.46;ReadPosRankSum=2.393;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:2,303:311:99:6052,663,0 chrVIII 236137 . T C 8227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=348;Dels=0.00;FS=5.853;HaplotypeScore=27.4154;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.718;QD=23.64;ReadPosRankSum=2.940;SB=-4.057e+03 GT:AD:DP:GQ:PL 1/1:3,345:348:99:8227,868,0 chrVIII 236191 . G A 9524.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=23.2753;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.61;SB=-4.845e+03 GT:AD:DP:GQ:PL 1/1:0,386:387:99:9524,962,0 chrVIII 236227 . G A 8615.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=9.0055;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.41;SB=-4.738e+03 GT:AD:DP:GQ:PL 1/1:0,353:353:99:8615,877,0 chrVIII 236251 . T C 7005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=11.1802;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.195;QD=21.75;ReadPosRankSum=1.721;SB=-4.115e+03 GT:AD:DP:GQ:PL 1/1:1,319:322:99:7005,745,0 chrVIII 237138 . T C 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.534;QD=23.87;ReadPosRankSum=2.402;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:3,43:46:99:1131,117,0 chrVIII 237146 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.56;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1211,123,0 chrVIII 237318 . T C 2624 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.24;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2657,276,0 chrVIII 237328 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.99;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2292,246,0 chrVIII 237474 . G C 4603.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.0335;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.62;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4603,472,0 chrVIII 237556 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.761;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.935;QD=23.30;ReadPosRankSum=1.677;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2969,312,0 chrVIII 237624 . G C 2315 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.37;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2348,261,0 chrVIII 237696 . T G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=92;Dels=0.00;FS=10.463;HaplotypeScore=16.2578;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.460;QD=15.75;ReadPosRankSum=1.693;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1482,156,0 chrVIII 237787 . C G 660 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=15.35;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:693,78,0 chrVIII 237789 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=16.00;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:705,78,0 chrVIII 237803 . T C 546 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=18.20;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:579,66,0 chrVIII 237957 . T G 863 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=15.98;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:896,96,0 chrVIII 237958 . C G 875 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=16.51;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:908,96,0 chrVIII 237959 . T G 874 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=16.81;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:907,96,0 chrVIII 237971 . G T 791 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=15.51;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:824,87,0 chrVIII 237972 . A G 765 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=15.00;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:798,87,0 chrVIII 237974 . A G 781 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=15.31;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:814,87,0 chrVIII 237992 . T C 525 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=11.41;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:46:60:558,60,0 chrVIII 238170 . T C 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.249;QD=23.06;ReadPosRankSum=1.652;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2016,210,0 chrVIII 238190 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=23.32;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2365,243,0 chrVIII 238456 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.192;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.226;QD=23.77;ReadPosRankSum=1.631;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4113,450,0 chrVIII 238746 . C G 2895 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.93;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2928,303,0 chrVIII 238800 . G C 1915 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.16;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1948,213,0 chrVIII 238812 . A C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5051;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.453;QD=21.68;ReadPosRankSum=1.653;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1919,204,0 chrVIII 239033 . G T 2179 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.94;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2212,231,0 chrVIII 239069 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.403;QD=21.86;ReadPosRankSum=1.927;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2525,270,0 chrVIII 239223 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=14.74;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2170,225,0 chrVIII 239430 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.87;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4433,454,0 chrVIII 240144 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.4045;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.33;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4060,435,0 chrVIII 241470 . C A 2277 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2310,237,0 chrVIII 242062 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.87;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1990,204,0 chrVIII 242300 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.09;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3011,309,0 chrVIII 242344 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.86;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3949,403,0 chrVIII 242526 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=19.0317;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.78;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3031,312,0 chrVIII 242816 . A C 4911.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.8173;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.53;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4911,534,0 chrVIII 243367 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.68;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4270,456,0 chrVIII 243403 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.871;QD=24.81;ReadPosRankSum=1.711;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4020,435,0 chrVIII 243508 . G C 5740.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.3524;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.40;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5740,601,0 chrVIII 243772 . G A 5274.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.65;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5274,562,0 chrVIII 244245 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.49;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2822,297,0 chrVIII 244248 . A C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=126;Dels=0.00;FS=6.196;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.888;QD=22.52;ReadPosRankSum=2.372;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2871,306,0 chrVIII 244337 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3370,348,0 chrVIII 244894 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=4.226;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.504;QD=24.16;ReadPosRankSum=1.631;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4179,444,0 chrVIII 244931 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9347;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.57;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4066,415,0 chrVIII 245608 . C T 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=59.3913;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.553;QD=20.22;ReadPosRankSum=1.474;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1954,179,0 chrVIII 245718 . A T 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.197;DP=95;Dels=0.00;FS=12.516;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.695;QD=20.47;ReadPosRankSum=2.011;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1978,184,0 chrVIII 245722 . A T 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=6.449;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.742;QD=20.38;ReadPosRankSum=2.293;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1949,201,0 chrVIII 245732 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=19.88;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1862,195,0 chrVIII 245779 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.680;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.041;QD=17.03;ReadPosRankSum=1.691;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,83:87:99:1515,162,0 chrVIII 245791 . T A 1553 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=18.94;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1586,165,0 chrVIII 245815 . A C 1929 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.09;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1962,213,0 chrVIII 245841 . A T 1764 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=19.82;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1797,192,0 chrVIII 245849 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.90;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1956,201,0 chrVIII 245924 . T G 2587 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.41;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2620,273,0 chrVIII 245947 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.15;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2617,270,0 chrVIII 246363 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=163;Dels=0.00;FS=3.743;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.549;QD=23.91;ReadPosRankSum=1.711;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3897,394,0 chrVIII 246612 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4795;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.05;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4283,448,0 chrVIII 246987 . T C 5054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=4.350;HaplotypeScore=22.9358;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.042;QD=22.26;ReadPosRankSum=1.686;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5054,555,0 chrVIII 247269 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5178,532,0 chrVIII 247398 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.85;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3959,415,0 chrVIII 247659 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5466;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3640,370,0 chrVIII 247833 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3739,382,0 chrVIII 247980 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.2708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.396;QD=24.04;ReadPosRankSum=1.687;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3678,387,0 chrVIII 248390 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=70.3184;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.52;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1604,165,0 chrVIII 248538 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=1.287;QD=19.69;ReadPosRankSum=1.683;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1411,150,0 chrVIII 248547 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.66;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1311,135,0 chrVIII 248565 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.95;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:990,105,0 chrVIII 248571 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.46;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1084,114,0 chrVIII 248649 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4495;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.65;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3107,324,0 chrVIII 248702 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.67;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3979,412,0 chrVIII 249146 . T C 3033 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.88;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3066,330,0 chrVIII 249222 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.111;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.468;QD=20.27;ReadPosRankSum=1.706;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2688,282,0 chrVIII 249231 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.832;QD=19.67;ReadPosRankSum=1.650;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2531,273,0 chrVIII 249234 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.879;QD=19.88;ReadPosRankSum=1.679;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2617,282,0 chrVIII 249457 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.71;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3067,313,0 chrVIII 249741 . G T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.38;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3581,378,0 chrVIII 249790 . T G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.22;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3754,396,0 chrVIII 249839 . G T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.72;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3524,364,0 chrVIII 249867 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.70;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3043,324,0 chrVIII 249919 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=154;Dels=0.00;FS=10.189;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.183;QD=24.96;ReadPosRankSum=2.889;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3844,405,0 chrVIII 250612 . A C 3191 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.17;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3224,336,0 chrVIII 250698 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.19;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2677,276,0 chrVIII 250744 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.92;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3095,330,0 chrVIII 250766 . G T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.53;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3345,346,0 chrVIII 250913 . A T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.57;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3563,361,0 chrVIII 251021 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.39;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3004,309,0 chrVIII 251694 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=6.205;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.802;QD=23.39;ReadPosRankSum=2.376;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3906,423,0 chrVIII 252321 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2386,255,0 chrVIII 252707 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=24.39;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4731,487,0 chrVIII 252950 . A G 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450;DP=436;Dels=0.00;FS=132.309;HaplotypeScore=56.3253;MLEAC=1;MLEAF=0.500;MQ=53.50;MQ0=0;MQRankSum=6.263;QD=0.68;ReadPosRankSum=-8.134;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:386,50:436:99:326,0,1686 chrVIII 252956 . C G 6252.01 filter AC=2;AF=1.00;AN=2;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=14.34;SB=-5.738e+03 GT:AD:DP:GQ:PL 1/1:0,436:436:99:6252,699,0 chrVIII 252968 . C G 6582.01 filter AC=2;AF=1.00;AN=2;DP=469;Dels=0.00;FS=0.000;HaplotypeScore=12.3888;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=14.03;SB=-5.508e+03 GT:AD:DP:GQ:PL 1/1:0,462:469:99:6582,714,0 chrVIII 253019 . C T 6345.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=17.3285;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=15.74;SB=-4.245e+03 GT:AD:DP:GQ:PL 1/1:0,399:403:99:6345,658,0 chrVIII 253373 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2068,213,0 chrVIII 253492 . A C 1849 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1882,201,0 chrVIII 253745 . T A 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.278;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.577;QD=22.97;ReadPosRankSum=1.703;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2721,294,0 chrVIII 253999 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.93;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2280,234,0 chrVIII 254158 . A T 2752 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.25;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2785,283,0 chrVIII 254195 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1916,201,0 chrVIII 254246 . A C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.125;QD=20.82;ReadPosRankSum=-1.661;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2073,199,0 chrVIII 254330 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2804,291,0 chrVIII 254816 . A G 3090 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3123,345,0 chrVIII 255644 . A G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.793;QD=20.85;ReadPosRankSum=1.673;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2493,261,0 chrVIII 255648 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2417,261,0 chrVIII 256099 . A T 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=4.843;HaplotypeScore=15.3128;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.994;QD=23.48;ReadPosRankSum=1.647;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2897,303,0 chrVIII 256169 . G C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.04;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3515,366,0 chrVIII 256974 . T G 2632 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2665,288,0 chrVIII 257025 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2650,282,0 chrVIII 257163 . A T 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.657;QD=23.06;ReadPosRankSum=1.692;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2039,216,0 chrVIII 257988 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.28;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3702,376,0 chrVIII 258000 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.057;QD=22.25;ReadPosRankSum=1.596;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3405,354,0 chrVIII 258006 . C G 3137 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.50;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3170,336,0 chrVIII 258019 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.69;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3362,343,0 chrVIII 258412 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.58;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2650,276,0 chrVIII 258469 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.148;QD=22.06;ReadPosRankSum=1.699;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2371,243,0 chrVIII 258472 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.91;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2334,246,0 chrVIII 258556 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=112;Dels=0.00;FS=11.361;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.646;QD=23.58;ReadPosRankSum=2.937;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2674,291,0 chrVIII 258587 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.15;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2209,231,0 chrVIII 258724 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.72;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2571,276,0 chrVIII 258754 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.60;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2370,252,0 chrVIII 258806 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=25.17;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3230,333,0 chrVIII 259012 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.83;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2750,291,0 chrVIII 259045 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.117;QD=23.79;ReadPosRankSum=1.654;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3197,333,0 chrVIII 259588 . T C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.012;QD=22.97;ReadPosRankSum=2.402;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2422,252,0 chrVIII 260343 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.203;QD=22.78;ReadPosRankSum=1.706;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:3086,330,0 chrVIII 261028 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=124;Dels=0.00;FS=8.119;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.755;QD=22.29;ReadPosRankSum=2.410;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2797,300,0 chrVIII 261465 . C A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.89;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3908,400,0 chrVIII 261501 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.93;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4380,451,0 chrVIII 261638 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=2.588;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.048;QD=25.04;ReadPosRankSum=2.870;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3681,387,0 chrVIII 261724 . A T 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.5486;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.633;QD=23.79;ReadPosRankSum=2.358;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2579,264,0 chrVIII 262417 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=26.95;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3105,321,0 chrVIII 262470 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.92;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2974,315,0 chrVIII 262597 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=23.29;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3061,310,0 chrVIII 262604 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=2.991;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-0.244;QD=20.14;ReadPosRankSum=2.372;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2571,261,0 chrVIII 262610 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=3.460;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=-1.363;QD=20.27;ReadPosRankSum=1.675;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2506,267,0 chrVIII 262624 . C G 1929 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=16.92;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1962,216,0 chrVIII 262647 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=15.07;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1691,180,0 chrVIII 262734 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.89;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2970,309,0 chrVIII 263049 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=7.830;HaplotypeScore=9.0686;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.100;QD=24.91;ReadPosRankSum=2.369;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4583,487,0 chrVIII 263207 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=26.35;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3426,349,0 chrVIII 263248 . T G 2955 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0976;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.45;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2988,321,0 chrVIII 263279 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.02;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2940,309,0 chrVIII 263344 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.460;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.454;QD=23.52;ReadPosRankSum=1.675;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2902,303,0 chrVIII 263409 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.67;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2617,267,0 chrVIII 263427 . C T 2560 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.49;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2593,261,0 chrVIII 263629 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1454;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.34;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2978,306,0 chrVIII 263635 . T A 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=2.942;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.292;QD=20.81;ReadPosRankSum=2.414;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2925,297,0 chrVIII 264180 . G C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.70;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4290,456,0 chrVIII 264343 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.283;QD=24.59;ReadPosRankSum=1.709;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3787,396,0 chrVIII 264484 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.9184;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.63;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4212,448,0 chrVIII 264529 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.9907;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.09;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3814,388,0 chrVIII 264628 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.095;QD=24.67;ReadPosRankSum=1.711;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:4046,412,0 chrVIII 264793 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.498;QD=21.12;ReadPosRankSum=1.710;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3400,372,0 chrVIII 264810 . T G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.865;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.650;QD=20.15;ReadPosRankSum=1.711;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3406,354,0 chrVIII 264832 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.35;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3352,357,0 chrVIII 264901 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=169;Dels=0.00;FS=3.306;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.628;QD=22.36;ReadPosRankSum=1.628;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3779,417,0 chrVIII 265200 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2896,292,0 chrVIII 265246 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=114;Dels=0.00;FS=9.622;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.690;QD=22.41;ReadPosRankSum=2.939;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2588,273,0 chrVIII 265849 . A C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=18.1732;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.199;QD=22.19;ReadPosRankSum=1.711;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3662,405,0 chrVIII 265933 . G T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.3851;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.76;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5179,532,0 chrVIII 266203 . T C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.291;QD=23.02;ReadPosRankSum=1.707;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3210,345,0 chrVIII 266440 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.675;QD=23.40;ReadPosRankSum=1.687;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3603,384,0 chrVIII 266720 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=3.032;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.150;QD=21.35;ReadPosRankSum=2.410;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2659,279,0 chrVIII 266730 . C T 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.304;QD=21.01;ReadPosRankSum=-1.580;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2428,233,0 chrVIII 266757 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.46;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2998,309,0 chrVIII 267185 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.53;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3777,408,0 chrVIII 267471 . C A 3187 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=24.14;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3220,336,0 chrVIII 267475 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=24.57;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3178,322,0 chrVIII 267487 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.385;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.577;QD=20.02;ReadPosRankSum=1.705;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2635,285,0 chrVIII 267488 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.08;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2643,285,0 chrVIII 267649 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.66;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3267,342,0 chrVIII 268032 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.320;QD=25.19;ReadPosRankSum=1.705;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3207,339,0 chrVIII 268954 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3673,393,0 chrVIII 269908 . T C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.781;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.460;QD=23.54;ReadPosRankSum=2.325;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2387,249,0 chrVIII 270109 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.265;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.211;QD=23.36;ReadPosRankSum=1.648;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2930,309,0 chrVIII 270259 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.880;QD=22.09;ReadPosRankSum=2.407;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2617,273,0 chrVIII 270272 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.01;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2932,300,0 chrVIII 270354 . G C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3606,376,0 chrVIII 271937 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=52.4531;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.04;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1314,132,0 chrVIII 272308 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.055;QD=23.32;ReadPosRankSum=1.706;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3158,336,0 chrVIII 272411 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.40;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2944,312,0 chrVIII 272512 . C G 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.174;QD=21.89;ReadPosRankSum=1.527;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3765,408,0 chrVIII 272617 . A G 5085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=213;Dels=0.00;FS=11.820;HaplotypeScore=21.2652;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.720;QD=23.87;ReadPosRankSum=2.380;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5085,564,0 chrVIII 272785 . G C 6288.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=13.6875;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.82;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6288,664,0 chrVIII 273164 . A C 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.4473;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.424;QD=22.40;ReadPosRankSum=1.702;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:5265,559,0 chrVIII 273178 . A T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.29;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5237,547,0 chrVIII 273222 . G A 5347.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.45;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5347,547,0 chrVIII 273274 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.68;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4615,475,0 chrVIII 273442 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=2.962;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.908;QD=23.90;ReadPosRankSum=2.420;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4039,432,0 chrVIII 274227 . T C 2624 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2657,285,0 chrVIII 274295 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2262,225,0 chrVIII 274614 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2518,258,0 chrVIII 275053 . C G 2847 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2880,300,0 chrVIII 277479 . A T 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.176;QD=24.35;ReadPosRankSum=1.682;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5065,526,0 chrVIII 277837 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.66;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2730,279,0 chrVIII 278298 . T C 4678.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4678,496,0 chrVIII 278404 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.85;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4446,451,0 chrVIII 278605 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.68;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3242,342,0 chrVIII 278746 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.78;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4150,430,0 chrVIII 278773 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=25.01;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4002,409,0 chrVIII 278857 . A T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3581,381,0 chrVIII 279091 . C T 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.658;HaplotypeScore=14.4667;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.406;QD=24.12;ReadPosRankSum=1.646;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4896,520,0 chrVIII 279197 . T G 5280.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.3658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5280,556,0 chrVIII 279518 . T G 5387.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5387,577,0 chrVIII 279622 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.695;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.403;QD=23.20;ReadPosRankSum=1.713;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,184:190:99:4408,480,0 chrVIII 279897 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.66;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3319,345,0 chrVIII 280101 . C T 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.302;QD=20.21;ReadPosRankSum=-0.357;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1306,135,0 chrVIII 280191 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.221;QD=20.74;ReadPosRankSum=2.919;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1837,195,0 chrVIII 280201 . T G 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9181;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.28;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2033,216,0 chrVIII 280455 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.52;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3020,321,0 chrVIII 280490 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=108;Dels=0.00;FS=7.198;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.265;QD=21.84;ReadPosRankSum=2.335;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2392,255,0 chrVIII 280501 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.28;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2461,249,0 chrVIII 280864 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3823,405,0 chrVIII 282666 . T G 870 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:903,99,0 chrVIII 282921 . A T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.44;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3624,373,0 chrVIII 282930 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.61;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3483,366,0 chrVIII 283226 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=4.607;HaplotypeScore=8.6011;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.560;QD=18.82;ReadPosRankSum=1.652;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2498,276,0 chrVIII 283475 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.358;HaplotypeScore=124.8231;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.172;QD=22.44;ReadPosRankSum=1.652;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2995,309,0 chrVIII 283558 . A C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.219;QD=23.39;ReadPosRankSum=1.219;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3190,351,0 chrVIII 283616 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=5.566;HaplotypeScore=16.0677;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.845;QD=24.13;ReadPosRankSum=2.953;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3620,390,0 chrVIII 283677 . T A 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.844;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=121.4922;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.367;QD=22.18;ReadPosRankSum=1.954;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3005,297,0 chrVIII 283957 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=4.136;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.232;QD=20.13;ReadPosRankSum=1.623;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2590,270,0 chrVIII 283960 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.119;QD=18.96;ReadPosRankSum=1.653;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2555,264,0 chrVIII 284047 . C G 3764.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.13;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3764,399,0 chrVIII 284075 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.66;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3430,363,0 chrVIII 284128 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=138;Dels=0.00;FS=11.603;HaplotypeScore=17.9068;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.694;QD=23.03;ReadPosRankSum=2.918;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,132:138:99:3211,325,0 chrVIII 284685 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.28;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2640,285,0 chrVIII 284827 . T A 2039 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.92;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2072,219,0 chrVIII 284832 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.67;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1852,198,0 chrVIII 285198 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.853;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.701;QD=23.03;ReadPosRankSum=2.400;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3478,366,0 chrVIII 285289 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.29;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3154,330,0 chrVIII 285301 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.64;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2893,300,0 chrVIII 285977 . A T 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=157;Dels=0.00;FS=7.779;HaplotypeScore=11.6569;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.733;QD=25.00;ReadPosRankSum=2.339;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3925,400,0 chrVIII 286244 . C A 2755 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2788,288,0 chrVIII 286666 . G C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.2574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3588,370,0 chrVIII 286796 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.74;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2142,219,0 chrVIII 286830 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1719,192,0 chrVIII 287123 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2647,297,0 chrVIII 287306 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=182;Dels=0.00;FS=2.917;HaplotypeScore=12.6786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.978;QD=24.34;ReadPosRankSum=2.382;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4430,486,0 chrVIII 287666 . A G 2424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=2.938;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;MQRankSum=-2.012;QD=13.93;ReadPosRankSum=2.407;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:2457,270,0 chrVIII 287669 . A C 2309 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=167;Dels=0.00;FS=5.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-2.729;QD=13.83;ReadPosRankSum=2.934;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:2342,249,0 chrVIII 287671 . A T 2291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=-1.601;QD=14.41;ReadPosRankSum=1.689;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2324,243,0 chrVIII 287675 . G C 1916 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=10.95;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1949,222,0 chrVIII 287678 . A G 2042 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=11.80;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2075,219,0 chrVIII 287699 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=11.22;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:2030,210,0 chrVIII 287702 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=175;Dels=0.00;FS=5.758;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;MQRankSum=0.830;QD=11.35;ReadPosRankSum=2.948;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,169:175:99:2020,213,0 chrVIII 288884 . T G 1932 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1965,204,0 chrVIII 289028 . A T 812 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=27.07;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:90:845,90,0 chrVIII 289350 . A G 584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=37;Dels=0.00;FS=3.399;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.238;QD=15.78;ReadPosRankSum=1.634;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,34:37:69:617,69,0 chrVIII 289695 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.396;QD=23.24;ReadPosRankSum=1.650;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2984,321,0 chrVIII 289811 . A T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.11;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4017,426,0 chrVIII 289865 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2039;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.84;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3378,357,0 chrVIII 290060 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.521;QD=21.11;ReadPosRankSum=1.706;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2799,297,0 chrVIII 290253 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.476;DP=111;Dels=0.00;FS=4.189;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.789;QD=20.56;ReadPosRankSum=2.410;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:5,106:111:99:2315,246,0 chrVIII 290681 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=20.1523;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=24.09;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2008,201,0 chrVIII 290711 . A C 1900 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=21.35;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1933,201,0 chrVIII 290747 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=76.5578;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=20.60;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1702,177,0 chrVIII 290766 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=20.72;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1566,159,0 chrVIII 290789 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=64;Dels=0.00;FS=8.258;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=-0.874;QD=15.75;ReadPosRankSum=3.314;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:4,60:64:99:1041,108,0 chrVIII 290790 . C A 1006 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=16.23;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1039,108,0 chrVIII 290985 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.05;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2814,294,0 chrVIII 291084 . T A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.6063;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=26.50;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4267,436,0 chrVIII 291312 . G A 3911.01 SnpCluster AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=15.34;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:3911,406,0 chrVIII 291315 . A G 3798.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=254;Dels=0.00;FS=8.389;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;MQRankSum=-2.073;QD=14.95;ReadPosRankSum=2.324;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:3798,402,0 chrVIII 291318 . G A 3449.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=255;Dels=0.00;FS=4.271;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=33.45;MQ0=1;MQRankSum=-1.405;QD=13.53;ReadPosRankSum=1.718;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:3449,366,0 chrVIII 291327 . T G 3143 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=232.6853;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=1;QD=12.88;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:3176,333,0 chrVIII 291360 . T G 1888 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=153.9199;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=1;QD=8.32;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:1921,216,0 chrVIII 291363 . A T 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=3.842;HaplotypeScore=154.0825;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;MQRankSum=1.510;QD=6.63;ReadPosRankSum=1.716;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:1486,177,0 chrVIII 291381 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=198.0313;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=1;QD=7.75;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:1815,189,0 chrVIII 291396 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=1;QD=7.28;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:1750,183,0 chrVIII 291399 . A G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=243;Dels=0.00;FS=6.599;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=1;MQRankSum=-1.319;QD=7.23;ReadPosRankSum=2.429;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:3,239:243:99:1790,195,0 chrVIII 291411 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=1;QD=10.76;SB=-3.446e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:2691,273,0 chrVIII 291471 . G A 5273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.4650;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=0.247;QD=21.52;ReadPosRankSum=-0.276;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5273,515,0 chrVIII 291726 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.21;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2782,288,0 chrVIII 291731 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=155;Dels=0.00;FS=9.112;HaplotypeScore=4.2517;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.773;QD=17.40;ReadPosRankSum=3.301;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:2730,297,0 chrVIII 291987 . A C 5186.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.12;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5186,567,0 chrVIII 292143 . T G 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=209;Dels=0.00;FS=9.353;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.771;QD=22.51;ReadPosRankSum=2.927;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:4704,513,0 chrVIII 292176 . T G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.321;DP=223;Dels=0.00;FS=3.444;HaplotypeScore=9.8162;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.575;QD=21.06;ReadPosRankSum=-0.024;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4697,488,0 chrVIII 292435 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.99;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3766,388,0 chrVIII 292444 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.89;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3456,363,0 chrVIII 293342 . G T 2225 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.18;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2258,240,0 chrVIII 293376 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.11;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2748,285,0 chrVIII 293443 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=16.19;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1166,117,0 chrVIII 293457 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.63;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:955,102,0 chrVIII 293487 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=15.34;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1291,135,0 chrVIII 293529 . T A 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.07;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2181,222,0 chrVIII 293566 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5723;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.35;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2999,318,0 chrVIII 293740 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.78;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1833,186,0 chrVIII 293762 . G T 1753 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.38;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1786,189,0 chrVIII 293821 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=105;Dels=0.00;FS=5.542;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.356;QD=17.74;ReadPosRankSum=2.895;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1896,204,0 chrVIII 293825 . T C 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=2.800;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.275;QD=17.72;ReadPosRankSum=2.402;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1858,201,0 chrVIII 293909 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.47;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2521,258,0 chrVIII 294183 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=25.32;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4001,409,0 chrVIII 294201 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=24.07;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3514,363,0 chrVIII 294204 . T G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=23.84;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3457,360,0 chrVIII 294409 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=20.93;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1833,192,0 chrVIII 294412 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=21.15;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1852,189,0 chrVIII 294446 . T A 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;DP=47;Dels=0.00;FS=2.864;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.133;QD=17.68;ReadPosRankSum=2.345;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:87:864,87,0 chrVIII 294447 . G A 824 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=17.53;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:87:857,87,0 chrVIII 294768 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3014,318,0 chrVIII 294900 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.60;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2884,297,0 chrVIII 294915 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.62;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2407,255,0 chrVIII 295200 . T G 4510.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.6317;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.59;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4510,495,0 chrVIII 295376 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.5991;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.94;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3917,400,0 chrVIII 295445 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.94;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3641,387,0 chrVIII 295470 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.42;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3606,375,0 chrVIII 295620 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.6997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4870,499,0 chrVIII 296082 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.30;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3812,417,0 chrVIII 296229 . T G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.48;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3991,406,0 chrVIII 296571 . A T 709 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.45;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:742,78,0 chrVIII 296592 . C G 556 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=36.8317;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=13.24;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:63:589,63,0 chrVIII 296619 . T G 814 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=14.80;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:847,90,0 chrVIII 296691 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=23.24;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1985,204,0 chrVIII 296707 . C G 2207 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.8618;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.82;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2240,240,0 chrVIII 296845 . A G 5922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=232;Dels=0.00;FS=4.944;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.592;QD=25.53;ReadPosRankSum=1.702;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5922,622,0 chrVIII 296890 . G A 6355.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=5.5895;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=24.92;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6355,640,0 chrVIII 296900 . T C 5596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.1448;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.083;QD=22.21;ReadPosRankSum=2.312;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,248:252:99:5596,589,0 chrVIII 297048 . C T 5163.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.6671;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.06;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5163,553,0 chrVIII 297072 . A T 5366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.279;QD=21.55;ReadPosRankSum=1.690;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5366,550,0 chrVIII 297269 . T A 2509 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.90;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2542,261,0 chrVIII 297281 . G C 2226 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.19;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2259,240,0 chrVIII 297312 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=2.952;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.080;QD=23.25;ReadPosRankSum=2.389;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1916,204,0 chrVIII 297421 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.88;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3287,337,0 chrVIII 297669 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1225;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.49;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4664,475,0 chrVIII 297731 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=2.827;HaplotypeScore=11.6318;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.356;QD=21.91;ReadPosRankSum=2.369;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3987,426,0 chrVIII 297766 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6108;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.148;QD=22.01;ReadPosRankSum=1.712;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3808,399,0 chrVIII 297814 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.8927;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.12;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4149,438,0 chrVIII 297979 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3735,393,0 chrVIII 298388 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3646,384,0 chrVIII 298516 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.656;QD=22.67;ReadPosRankSum=1.598;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2391,252,0 chrVIII 298725 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.75;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2879,297,0 chrVIII 298776 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.97;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2814,288,0 chrVIII 298950 . T A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8370;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.03;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4243,436,0 chrVIII 299178 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4071,418,0 chrVIII 299430 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.5741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.035;QD=24.15;ReadPosRankSum=1.672;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4226,439,0 chrVIII 299583 . G C 2630 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.13;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2663,276,0 chrVIII 299724 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.41;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3909,397,0 chrVIII 299778 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.663;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.592;QD=23.33;ReadPosRankSum=1.579;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3709,411,0 chrVIII 299865 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.85;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3703,376,0 chrVIII 300078 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3689,387,0 chrVIII 300204 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.88;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3459,355,0 chrVIII 300311 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.400;QD=24.51;ReadPosRankSum=1.684;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3554,370,0 chrVIII 300372 . G C 3162 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3195,351,0 chrVIII 301054 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=187;Dels=0.00;FS=3.350;HaplotypeScore=15.9022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.764;QD=23.67;ReadPosRankSum=1.695;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4427,466,0 chrVIII 306657 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.547;QD=22.49;ReadPosRankSum=1.670;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2552,276,0 chrVIII 308245 . A G 1991 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2024,219,0 chrVIII 309963 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3180,339,0 chrVIII 313356 . C G 2847 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.09;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2880,318,0 chrVIII 315450 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.563;QD=25.73;ReadPosRankSum=1.708;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3705,393,0 chrVIII 315879 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=184;Dels=0.00;FS=4.880;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.482;QD=24.15;ReadPosRankSum=3.383;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:4443,474,0 chrVIII 317296 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.580;QD=21.71;ReadPosRankSum=1.713;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3973,412,0 chrVIII 317992 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.83;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3431,355,0 chrVIII 318657 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.933;QD=23.84;ReadPosRankSum=1.713;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4338,471,0 chrVIII 318761 . T C 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=195;Dels=0.00;FS=5.237;HaplotypeScore=15.9796;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.551;QD=22.83;ReadPosRankSum=3.344;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4451,474,0 chrVIII 319262 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.48;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4382,448,0 chrVIII 320524 . A T 5449.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5449,559,0 chrVIII 320927 . G A 4930.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=25.28;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4930,528,0 chrVIII 325059 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.243;HaplotypeScore=16.2606;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.813;QD=25.82;ReadPosRankSum=-1.305;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5474,562,0 chrVIII 325510 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.7477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4291,453,0 chrVIII 327125 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4104,421,0 chrVIII 328271 . C A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=24.75;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3985,423,0 chrVIII 329603 . T G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.925;HaplotypeScore=11.3410;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.715;QD=20.57;ReadPosRankSum=1.697;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4113,450,0 chrVIII 330276 . T G 2581 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2614,282,0 chrVIII 330629 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.488;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.299;QD=22.09;ReadPosRankSum=1.660;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2176,237,0 chrVIII 331377 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.23;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:3757,405,0 chrVIII 334860 . A T 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=7.970;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.405;QD=25.02;ReadPosRankSum=2.350;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4929,502,0 chrVIII 336067 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7377;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.03;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4053,432,0 chrVIII 336408 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.495;QD=25.24;ReadPosRankSum=1.668;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4063,424,0 chrVIII 337147 . C A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.7227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.37;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4564,501,0 chrVIII 337281 . C T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.74;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5320,547,0 chrVIII 337323 . G A 5813.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.27;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5813,592,0 chrVIII 337365 . T A 6239.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.6806;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.47;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6239,640,0 chrVIII 337794 . T A 1662 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0278;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.58;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1695,174,0 chrVIII 337824 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.98;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1229,132,0 chrVIII 339361 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.2182;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.55;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4451,457,0 chrVIII 339601 . A C 5551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=236;Dels=0.00;FS=3.376;HaplotypeScore=17.4810;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.142;QD=23.52;ReadPosRankSum=1.717;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5551,598,0 chrVIII 340175 . C T 2836 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2869,297,0 chrVIII 340253 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1730,177,0 chrVIII 341299 . T C 6424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=292;Dels=0.00;FS=10.861;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.838;QD=22.00;ReadPosRankSum=2.948;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:6424,699,0 chrVIII 341317 . G C 6417.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.3196;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.33;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:6417,673,0 chrVIII 341488 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.4539;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.08;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4743,499,0 chrVIII 342706 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.40;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4563,475,0 chrVIII 343053 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.77;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4508,478,0 chrVIII 343392 . G C 3108 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3141,330,0 chrVIII 343641 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2686,279,0 chrVIII 345473 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=157;Dels=0.00;FS=6.331;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.759;QD=22.14;ReadPosRankSum=2.309;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3476,381,0 chrVIII 345499 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.27;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3129,319,0 chrVIII 345875 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2572,264,0 chrVIII 347011 . T C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.836;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=24.12;ReadPosRankSum=1.699;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2542,264,0 chrVIII 350623 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.352;QD=24.73;ReadPosRankSum=1.703;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2951,318,0 chrVIII 351610 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.251;QD=24.17;ReadPosRankSum=1.676;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3030,321,0 chrVIII 351675 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.35;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3574,367,0 chrVIII 356286 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.18;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3274,339,0 chrVIII 359415 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2357,246,0 chrVIII 359670 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.284;QD=24.01;ReadPosRankSum=2.369;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:2,89:94:99:2290,243,0 chrVIII 360938 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.711;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.184;QD=25.06;ReadPosRankSum=1.708;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3559,370,0 chrVIII 361205 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.547;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.141;QD=21.97;ReadPosRankSum=1.692;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3800,391,0 chrVIII 361212 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.47;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3291,363,0 chrVIII 361272 . G T 2409 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.21;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2442,261,0 chrVIII 361900 . T G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.954;DP=68;Dels=0.00;FS=6.213;HaplotypeScore=13.6556;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.277;QD=16.71;ReadPosRankSum=0.154;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:3,63:68:99:1169,129,0 chrVIII 363516 . C G 5473.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5473,577,0 chrVIII 365358 . A G 6267.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.9781;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.38;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6267,711,0 chrVIII 367199 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.028;QD=24.00;ReadPosRankSum=1.676;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3009,309,0 chrVIII 370997 . C A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.56;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3934,400,0 chrVIII 372172 . G A 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=3.130;HaplotypeScore=16.4122;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.716;QD=24.34;ReadPosRankSum=1.386;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5403,550,0 chrVIII 372393 . A T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.75;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4333,442,0 chrVIII 372705 . C A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=17.4120;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.74;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3251,334,0 chrVIII 374774 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=210;Dels=0.00;FS=5.820;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.651;QD=21.20;ReadPosRankSum=2.967;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4452,475,0 chrVIII 374792 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.427;QD=19.49;ReadPosRankSum=1.671;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4444,480,0 chrVIII 374794 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=231;Dels=0.00;FS=7.707;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.272;QD=18.82;ReadPosRankSum=2.321;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4348,477,0 chrVIII 375097 . C G 4524.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.94;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4524,504,0 chrVIII 375560 . T G 1374 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.20;MQ0=0;QD=17.17;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1407,150,0 chrVIII 375686 . A C 2005 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.75;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2038,213,0 chrVIII 375703 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.83;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1928,198,0 chrVIII 375742 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.48;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1279,141,0 chrVIII 375825 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.62;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2273,243,0 chrVIII 375930 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.60;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2320,237,0 chrVIII 375943 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.76;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2303,252,0 chrVIII 376014 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.03;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2831,306,0 chrVIII 377022 . A G 2640 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=25.63;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2673,273,0 chrVIII 377068 . C G 2598 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.20;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2631,273,0 chrVIII 377086 . G C 2160 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.18;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2193,234,0 chrVIII 377259 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=24.93;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1753,177,0 chrVIII 377268 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-1.231;QD=21.38;ReadPosRankSum=1.687;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1679,177,0 chrVIII 377320 . G A 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.895;DP=80;Dels=0.00;FS=3.567;HaplotypeScore=3.5397;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.248;QD=17.34;ReadPosRankSum=1.957;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1420,171,0 chrVIII 377322 . A G 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.01;FS=6.198;HaplotypeScore=2.7510;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=1.224;QD=17.71;ReadPosRankSum=1.501;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1397,168,0 chrVIII 377373 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=7.270;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.433;QD=24.74;ReadPosRankSum=1.696;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2433,270,0 chrVIII 377460 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=24.98;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3206,330,0 chrVIII 377475 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.66;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3527,358,0 chrVIII 377707 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.89;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2660,270,0 chrVIII 377712 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.52;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2735,279,0 chrVIII 377752 . G C 2655 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.09;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2688,291,0 chrVIII 377826 . C G 1718 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=77.9962;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.71;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1751,189,0 chrVIII 377834 . G C 1708 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=87.3506;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.98;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1741,180,0 chrVIII 377956 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=22.70;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2280,249,0 chrVIII 378025 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=23.01;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1966,207,0 chrVIII 378101 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=22.31;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2353,240,0 chrVIII 378194 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=-1.125;QD=18.45;ReadPosRankSum=1.752;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2635,273,0 chrVIII 378234 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.83;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3707,411,0 chrVIII 378243 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.282;QD=20.41;ReadPosRankSum=3.415;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:3959,418,0 chrVIII 378257 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.30;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4000,415,0 chrVIII 378273 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.40;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3666,376,0 chrVIII 378318 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.90;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3442,366,0 chrVIII 378383 . C T 4933.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.72;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4933,523,0 chrVIII 378408 . T C 5273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=3.413;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.440;QD=22.25;ReadPosRankSum=1.717;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5273,565,0 chrVIII 378579 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3349;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.12;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4797,490,0 chrVIII 378618 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.174;QD=24.44;ReadPosRankSum=1.713;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4400,471,0 chrVIII 378903 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.44;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4007,421,0 chrVIII 378915 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.20;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3898,417,0 chrVIII 378942 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.95;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3951,426,0 chrVIII 379023 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.578;HaplotypeScore=10.7856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.714;QD=22.71;ReadPosRankSum=1.697;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4496,492,0 chrVIII 379253 . C A 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.034;QD=26.46;ReadPosRankSum=1.629;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3545,361,0 chrVIII 379507 . A G 4721.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4721,522,0 chrVIII 379885 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.1385;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.51;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4130,433,0 chrVIII 380077 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=150;Dels=0.00;FS=6.009;HaplotypeScore=12.5445;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.101;QD=23.61;ReadPosRankSum=2.885;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3541,384,0 chrVIII 380222 . T C 3111 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=30.3804;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.46;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3144,330,0 chrVIII 380236 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-1.018;QD=21.59;ReadPosRankSum=1.653;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2883,300,0 chrVIII 380267 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=22.11;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2907,295,0 chrVIII 380286 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.22;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2219,234,0 chrVIII 380290 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.83;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2254,234,0 chrVIII 380340 . A G 2285 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.56;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2318,246,0 chrVIII 380481 . T G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=2.729;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.079;QD=24.88;ReadPosRankSum=2.397;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3508,372,0 chrVIII 380530 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.229;HaplotypeScore=3.1810;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.472;QD=22.59;ReadPosRankSum=1.684;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3264,357,0 chrVIII 380542 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=2.778;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.828;QD=23.52;ReadPosRankSum=2.415;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3317,348,0 chrVIII 380685 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.18;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3069,327,0 chrVIII 380748 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.69;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,103:108:99:2375,246,0 chrVIII 380790 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.02;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2125,219,0 chrVIII 380934 . A C 2568 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.35;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2601,282,0 chrVIII 381446 . C A 1903 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.24;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1936,201,0 chrVIII 382732 . C G 3203 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3236,354,0 chrVIII 387261 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.72;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2116,225,0 chrVIII 387780 . C T 1558 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1591,165,0 chrVIII 388052 . A G 6175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=272;Dels=0.00;FS=11.416;HaplotypeScore=16.1228;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.892;QD=22.70;ReadPosRankSum=2.952;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:3,267:272:99:6175,643,0 chrVIII 388085 . A G 5421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=267;Dels=0.00;FS=10.504;HaplotypeScore=7.3962;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.317;QD=20.30;ReadPosRankSum=2.882;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:3,261:267:99:5421,574,0 chrVIII 388103 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.424;QD=18.09;ReadPosRankSum=1.707;SB=-3.575e+03 GT:AD:DP:GQ:PL 1/1:1,277:281:99:5082,549,0 chrVIII 388791 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.81;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3846,405,0 chrVIII 388890 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;DP=137;Dels=0.00;FS=10.566;HaplotypeScore=24.2867;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=2.415;QD=21.77;ReadPosRankSum=2.904;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:3016,330,0 chrVIII 389050 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=0.579;QD=22.82;ReadPosRankSum=2.409;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2794,294,0 chrVIII 389626 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=1.561;QD=23.10;ReadPosRankSum=1.698;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2366,252,0 chrVIII 389677 . T A 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=98;Dels=0.00;FS=3.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=2.073;QD=23.60;ReadPosRankSum=-0.515;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2346,249,0 chrVIII 389730 . C T 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.853;DP=100;Dels=0.00;FS=2.895;HaplotypeScore=8.1014;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=2.176;QD=21.32;ReadPosRankSum=1.803;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2165,222,0 chrVIII 389801 . A G 2724 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.33;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2757,306,0 chrVIII 389898 . T A 1807 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.59;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1840,189,0 chrVIII 389909 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.18;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,174,0 chrVIII 389922 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1220;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.61;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1805,180,0 chrVIII 389953 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.23;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2323,234,0 chrVIII 390041 . A T 2533 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.45;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2566,273,0 chrVIII 390446 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.38;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3828,411,0 chrVIII 390561 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.858;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.307;QD=25.43;ReadPosRankSum=1.708;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3637,384,0 chrVIII 390630 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.84;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3623,367,0 chrVIII 390647 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.914;QD=22.68;ReadPosRankSum=1.237;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3651,382,0 chrVIII 390900 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.20;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2701,276,0 chrVIII 391205 . T A 3063 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3096,321,0 chrVIII 391307 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.34;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4016,406,0 chrVIII 391334 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.072;QD=24.98;ReadPosRankSum=1.685;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3672,379,0 chrVIII 391559 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.77;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1935,198,0 chrVIII 391599 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.46;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1770,177,0 chrVIII 391739 . A G 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.871;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.624;QD=13.69;ReadPosRankSum=2.286;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:2,29:32:51:471,51,0 chrVIII 391951 . A G 11.35 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=2.84;ReadPosRankSum=-0.727;SB=0.011 GT:AD:DP:GQ:PL 0/1:1,3:4:21:41,0,21 chrVIII 392043 . T C 1446 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1479,159,0 chrVIII 392078 . G C 1455 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.98;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1488,156,0 chrVIII 392401 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.81;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1348,138,0 chrVIII 392524 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1200,123,0 chrVIII 392676 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.836;QD=25.34;ReadPosRankSum=1.702;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2972,318,0 chrVIII 393017 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.4790;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.84;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3025,309,0 chrVIII 393074 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=121;Dels=0.00;FS=15.314;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.732;QD=21.63;ReadPosRankSum=3.371;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2650,291,0 chrVIII 393364 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2957,312,0 chrVIII 393466 . A T 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.070;QD=23.19;ReadPosRankSum=1.709;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3432,366,0 chrVIII 393530 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=157;Dels=0.00;FS=3.298;HaplotypeScore=12.0410;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.222;QD=23.39;ReadPosRankSum=1.665;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3672,384,0 chrVIII 393725 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.70;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3225,348,0 chrVIII 393734 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=3.529;HaplotypeScore=7.4820;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.083;QD=18.51;ReadPosRankSum=1.710;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3013,324,0 chrVIII 394179 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.393;QD=24.18;ReadPosRankSum=1.694;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2258,237,0 chrVIII 394302 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=12.1486;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.71;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1373,141,0 chrVIII 394684 . G C 5359.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.58;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:5359,574,0 chrVIII 394728 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=233;Dels=0.00;FS=12.855;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.109;QD=22.38;ReadPosRankSum=2.328;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:4,227:232:99:5215,532,0 chrVIII 394731 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.4544;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.09;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4926,534,0 chrVIII 394959 . G A 5773.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=19.0218;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.99;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5773,586,0 chrVIII 395132 . G A 5486.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.96;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5486,556,0 chrVIII 395164 . T C 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=3.562;HaplotypeScore=582.6607;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.731;QD=20.92;ReadPosRankSum=1.700;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4582,498,0 chrVIII 395246 . G C 4460.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.08;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4460,460,0 chrVIII 395277 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=203;Dels=0.00;FS=2.577;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.020;QD=22.77;ReadPosRankSum=2.965;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4623,495,0 chrVIII 395310 . C A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.1033;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.01;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4513,469,0 chrVIII 395441 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.74;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2718,279,0 chrVIII 395453 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.465;QD=19.01;ReadPosRankSum=1.706;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2581,273,0 chrVIII 395596 . A C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.80;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3950,426,0 chrVIII 395607 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.88;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4453,457,0 chrVIII 395667 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=7.443;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.914;QD=22.20;ReadPosRankSum=2.282;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3929,420,0 chrVIII 396288 . A T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.2027;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.78;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4614,472,0 chrVIII 396423 . C T 5388.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.53;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5388,565,0 chrVIII 396474 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.4496;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.226;QD=23.24;ReadPosRankSum=1.717;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5346,562,0 chrVIII 396631 . A G 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=204;Dels=0.00;FS=4.998;HaplotypeScore=17.6965;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.971;QD=22.94;ReadPosRankSum=3.417;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4680,490,0 chrVIII 396688 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=9.707;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.549;QD=23.60;ReadPosRankSum=2.419;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3824,420,0 chrVIII 396784 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.90;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2495,255,0 chrVIII 396997 . A G 1048 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=16.12;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1081,114,0 chrVIII 397001 . A G 1070 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=15.74;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1103,120,0 chrVIII 397005 . G T 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.84;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1142,123,0 chrVIII 397226 . C A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3129;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=24.33;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3309,339,0 chrVIII 397561 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6484;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.87;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3581,378,0 chrVIII 397787 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.372;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.554;QD=25.78;ReadPosRankSum=1.709;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3867,411,0 chrVIII 397848 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3140,321,0 chrVIII 398045 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4345,442,0 chrVIII 398255 . A T 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.628;QD=25.84;ReadPosRankSum=1.654;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3437,349,0 chrVIII 398452 . T C 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=3.166;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.917;QD=23.71;ReadPosRankSum=1.691;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2072,216,0 chrVIII 398618 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2211,228,0 chrVIII 398985 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=23.20;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1750,177,0 chrVIII 399012 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=23.64;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1830,183,0 chrVIII 399021 . C A 1508 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=20.94;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1541,168,0 chrVIII 399043 . A G 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=26.7068;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;MQRankSum=-1.621;QD=20.68;ReadPosRankSum=1.676;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1315,141,0 chrVIII 399074 . T A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=32.8613;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.06;SB=-5.877e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:6:61,6,0 chrVIII 399099 . T A 77.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=4.56;SB=-1.465e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:12:110,12,0 chrVIII 399104 . C T 86.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=5.41;SB=-1.515e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:12:119,12,0 chrVIII 399258 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=24.16;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1120,117,0 chrVIII 399316 . T C 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.297;QD=22.22;ReadPosRankSum=2.798;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1477,153,0 chrVIII 399409 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.34;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2274,246,0 chrVIII 399427 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.85;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2249,231,0 chrVIII 399484 . T G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.049;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.354;QD=20.77;ReadPosRankSum=2.293;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1985,213,0 chrVIII 399595 . A T 2520 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.11;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2553,264,0 chrVIII 399862 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=195;Dels=0.00;FS=12.546;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.886;QD=24.36;ReadPosRankSum=3.271;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:4,190:195:99:4751,516,0 chrVIII 399901 . T C 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.120;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.664;QD=24.09;ReadPosRankSum=1.646;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4842,519,0 chrVIII 400069 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4113,438,0 chrVIII 400443 . G C 3006 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.64;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:3039,312,0 chrVIII 400451 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=25.56;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3203,328,0 chrVIII 400618 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.81;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4862,517,0 chrVIII 400642 . A T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.68;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5726,604,0 chrVIII 401408 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.96;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3844,405,0 chrVIII 401484 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.49;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4665,481,0 chrVIII 402478 . T C 2646 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2679,282,0 chrVIII 402916 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.24;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2924,297,0 chrVIII 402933 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=21.55;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2619,279,0 chrVIII 402986 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.42;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1949,213,0 chrVIII 402990 . C A 1897 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.24;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1930,198,0 chrVIII 403022 . G T 1985 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.27;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2018,210,0 chrVIII 403115 . G C 2635 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.17;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2668,282,0 chrVIII 403151 . C A 2531 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.57;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2564,261,0 chrVIII 403215 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=25.19;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1998,204,0 chrVIII 403244 . G C 2200 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.44;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:2233,243,0 chrVIII 403838 . C G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3529,372,0 chrVIII 404452 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.27;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3018,309,0 chrVIII 404640 . C A 2085 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.28;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2118,216,0 chrVIII 404646 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.65;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1919,204,0 chrVIII 404657 . A T 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.694;QD=20.46;ReadPosRankSum=1.694;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1915,192,0 chrVIII 405006 . G A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.6553;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.82;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4641,475,0 chrVIII 405293 . G T 2840 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.67;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2873,306,0 chrVIII 405569 . T A 1099 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.13;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1132,120,0 chrVIII 405579 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.22;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1179,120,0 chrVIII 406060 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=25.27;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1701,174,0 chrVIII 406077 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.39;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1413,150,0 chrVIII 406328 . A C 1131 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.59;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1164,123,0 chrVIII 406414 . A G 1881 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.51;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1914,195,0 chrVIII 406429 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.28;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1635,183,0 chrVIII 406474 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.080;QD=22.01;ReadPosRankSum=1.698;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2278,222,0 chrVIII 406498 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.229;QD=25.05;ReadPosRankSum=2.353;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2588,270,0 chrVIII 406524 . C A 2893 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.94;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2926,297,0 chrVIII 406597 . T C 2992 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.93;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:3025,315,0 chrVIII 406625 . G T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=26.85;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3383,340,0 chrVIII 406734 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.23;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3482,358,0 chrVIII 407003 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.78;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3056,312,0 chrVIII 407300 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=129;Dels=0.00;FS=5.808;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.441;QD=20.74;ReadPosRankSum=2.898;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2709,282,0 chrVIII 407302 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.24;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2563,279,0 chrVIII 407637 . G T 2751 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2784,285,0 chrVIII 408482 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.475;QD=24.88;ReadPosRankSum=1.671;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2845,306,0 chrVIII 409115 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3005,327,0 chrVIII 409404 . C G 3034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,123:128:99:3067,324,0 chrVIII 409526 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.080;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.770;QD=24.30;ReadPosRankSum=1.705;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3095,324,0 chrVIII 409664 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.142;QD=24.49;ReadPosRankSum=1.685;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3576,381,0 chrVIII 410129 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.20;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2144,228,0 chrVIII 410162 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1790,186,0 chrVIII 410489 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=157;Dels=0.00;FS=6.104;HaplotypeScore=7.5060;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.041;QD=24.27;ReadPosRankSum=2.418;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3811,411,0 chrVIII 410842 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.91;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2370,252,0 chrVIII 411599 . T A 2184 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.75;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2217,228,0 chrVIII 411647 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2597,264,0 chrVIII 412143 . C A 2736 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.38;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2769,291,0 chrVIII 412170 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.56;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2921,303,0 chrVIII 412427 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.39;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3358,340,0 chrVIII 413175 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4472,454,0 chrVIII 413239 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.226;QD=23.82;ReadPosRankSum=1.682;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4931,534,0 chrVIII 413311 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.91;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4041,412,0 chrVIII 413370 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.52;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2871,289,0 chrVIII 413704 . G T 1385 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1418,147,0 chrVIII 414234 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3651,387,0 chrVIII 415310 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.7221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4086,424,0 chrVIII 415439 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2951,300,0 chrVIII 417054 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2609,279,0 chrVIII 418394 . A C 3793.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.63;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3793,402,0 chrVIII 418624 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=7.524;HaplotypeScore=15.4341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.198;QD=24.75;ReadPosRankSum=2.343;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:4010,412,0 chrVIII 419744 . T G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.979;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.669;QD=22.59;ReadPosRankSum=1.669;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2540,267,0 chrVIII 420248 . A T 2800 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2833,291,0 chrVIII 422538 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.03;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2346,258,0 chrVIII 422992 . A G 2603 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.88;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2636,279,0 chrVIII 423677 . T A 2503 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.07;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2536,255,0 chrVIII 424154 . C T 6049.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.3922;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.72;SB=-3.342e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6049,625,0 chrVIII 424817 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3494,364,0 chrVIII 425219 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.93;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2604,267,0 chrVIII 425300 . G T 2424 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=15.84;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2457,249,0 chrVIII 425301 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=15.80;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2434,249,0 chrVIII 425312 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=17.81;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2740,279,0 chrVIII 425823 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.068;DP=128;Dels=0.00;FS=18.272;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.108;QD=20.07;ReadPosRankSum=3.347;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:4,122:128:99:2602,270,0 chrVIII 426069 . T A 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=3.188;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.374;QD=23.22;ReadPosRankSum=1.677;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2936,303,0 chrVIII 426306 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1967;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.62;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3664,376,0 chrVIII 426350 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.4937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2953,321,0 chrVIII 426665 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.009;DP=146;Dels=0.00;FS=8.966;HaplotypeScore=20.6425;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.577;QD=17.99;ReadPosRankSum=3.373;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:5,140:146:99:2660,279,0 chrVIII 426716 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.522;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.567;QD=22.20;ReadPosRankSum=1.705;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2852,312,0 chrVIII 427166 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.9148;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.30;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,98:102:99:2206,234,0 chrVIII 427277 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.518;QD=24.11;ReadPosRankSum=1.689;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1986,210,0 chrVIII 427565 . A C 2530 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.5447;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.00;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2563,273,0 chrVIII 427619 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=114;Dels=0.00;FS=6.214;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.378;QD=24.18;ReadPosRankSum=2.407;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2789,294,0 chrVIII 427646 . T G 3283.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.50;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3283,342,0 chrVIII 427782 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3393,354,0 chrVIII 427901 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4282,436,0 chrVIII 428027 . T C 3108 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3141,336,0 chrVIII 428194 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=135;Dels=0.00;FS=2.464;HaplotypeScore=12.9002;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-0.421;QD=23.16;ReadPosRankSum=2.948;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3159,330,0 chrVIII 428387 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=17.92;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3512,378,0 chrVIII 428411 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=214;Dels=0.00;FS=13.895;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-2.189;QD=16.47;ReadPosRankSum=3.395;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:4,210:214:99:3524,375,0 chrVIII 428428 . T C 2766 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=14.63;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2799,300,0 chrVIII 428429 . C T 2662 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=14.08;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2695,294,0 chrVIII 428431 . C T 2922 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=15.30;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2955,300,0 chrVIII 428623 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.05;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4702,487,0 chrVIII 428738 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.63;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3744,379,0 chrVIII 429302 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.05;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3140,333,0 chrVIII 429323 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.70;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3269,331,0 chrVIII 429343 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.07;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2940,321,0 chrVIII 429526 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.58;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2949,301,0 chrVIII 430130 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9654;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.732;QD=25.09;ReadPosRankSum=1.708;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3537,372,0 chrVIII 430583 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3022,324,0 chrVIII 430901 . C T 4761.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4761,490,0 chrVIII 431051 . T A 4756.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4756,493,0 chrVIII 431614 . A G 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=8.817;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.408;QD=25.32;ReadPosRankSum=2.410;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4684,493,0 chrVIII 431870 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.64;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3089,315,0 chrVIII 431945 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.230;QD=24.05;ReadPosRankSum=1.679;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3256,336,0 chrVIII 433037 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=125;Dels=0.00;FS=6.651;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.696;QD=21.51;ReadPosRankSum=2.409;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,120:125:99:2722,297,0 chrVIII 433117 . C G 4276.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4340;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.01;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4276,442,0 chrVIII 433331 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.577;QD=23.21;ReadPosRankSum=0.075;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3259,334,0 chrVIII 433703 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3414,360,0 chrVIII 434154 . G C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.23;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4019,429,0 chrVIII 434588 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3599,390,0 chrVIII 434957 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.46;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2203,228,0 chrVIII 435305 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.28;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3012,318,0 chrVIII 435329 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.466;QD=24.05;ReadPosRankSum=2.314;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3512,375,0 chrVIII 435539 . C A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.44;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4523,463,0 chrVIII 435764 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.69;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4394,448,0 chrVIII 435830 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.20;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3026,327,0 chrVIII 436433 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.504;QD=22.87;ReadPosRankSum=1.709;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3476,378,0 chrVIII 436457 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.608;QD=24.46;ReadPosRankSum=1.686;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3694,379,0 chrVIII 436613 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.222;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.119;QD=21.05;ReadPosRankSum=1.709;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3127,327,0 chrVIII 436638 . T G 2585 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.88;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2618,273,0 chrVIII 436654 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.98;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2520,267,0 chrVIII 436695 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.44;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3079,321,0 chrVIII 436805 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.54;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2489,255,0 chrVIII 436859 . T C 2674 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.22;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2707,285,0 chrVIII 436939 . G T 1982 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.86;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2015,213,0 chrVIII 436978 . G A 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=5.1110;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.828;QD=15.29;ReadPosRankSum=1.694;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1486,156,0 chrVIII 437014 . G T 2191 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.29;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2224,231,0 chrVIII 437680 . G A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.14;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4324,442,0 chrVIII 437704 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.15;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3840,394,0 chrVIII 437974 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.60;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3059,310,0 chrVIII 438040 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.446;QD=22.88;ReadPosRankSum=1.703;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2802,294,0 chrVIII 438265 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1794,204,0 chrVIII 438307 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.22;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2353,240,0 chrVIII 439062 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6089;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.83;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3526,358,0 chrVIII 439180 . G C 3549.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.6018;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.82;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3549,372,0 chrVIII 439232 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.875;QD=25.47;ReadPosRankSum=1.661;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2504,261,0 chrVIII 439617 . G T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.40;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3617,373,0 chrVIII 439647 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=25.79;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3765,393,0 chrVIII 439710 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.302;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.260;QD=23.69;ReadPosRankSum=1.710;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3649,373,0 chrVIII 439716 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.86;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3275,351,0 chrVIII 439725 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.529;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.264;QD=20.13;ReadPosRankSum=1.709;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3073,324,0 chrVIII 439766 . A T 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.190;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.889;QD=20.47;ReadPosRankSum=1.709;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3062,315,0 chrVIII 440234 . A G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=3.931;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.499;QD=23.35;ReadPosRankSum=1.576;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2111,222,0 chrVIII 440297 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.13;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2698,273,0 chrVIII 440472 . A T 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.283;QD=24.53;ReadPosRankSum=1.687;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3753,402,0 chrVIII 440806 . C T 4962.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4962,508,0 chrVIII 441044 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.53;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4905,502,0 chrVIII 441167 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.464;QD=23.73;ReadPosRankSum=1.635;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3369,346,0 chrVIII 441789 . A T 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=118;Dels=0.00;FS=13.200;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.201;QD=24.42;ReadPosRankSum=3.383;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:2915,298,0 chrVIII 441833 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.415;QD=23.66;ReadPosRankSum=1.703;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2920,300,0 chrVIII 442149 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=149.6309;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.01;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1774,183,0 chrVIII 442160 . T G 40.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=79.5089;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=0;MQRankSum=0.691;QD=0.43;ReadPosRankSum=3.191;SB=-9.962e+02 GT:AD:DP:GQ:PL 0/1:4,89:93:11:70,0,11 chrVIII 444367 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.99;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3301,343,0 chrVIII 445169 . T C 5011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=195;Dels=0.00;FS=6.089;HaplotypeScore=9.5343;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.935;QD=25.70;ReadPosRankSum=2.424;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:5011,520,0 chrVIII 445735 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.37;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1861,192,0 chrVIII 445905 . A C 1996 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.43;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2029,219,0 chrVIII 447550 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2921,300,0 chrVIII 447838 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2476,249,0 chrVIII 447930 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3354,354,0 chrVIII 448924 . T G 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=23.03;ReadPosRankSum=1.588;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2797,309,0 chrVIII 448997 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2237,225,0 chrVIII 449277 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3947,426,0 chrVIII 449402 . T G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.22;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3756,405,0 chrVIII 450380 . T C 4727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.290;QD=25.41;ReadPosRankSum=1.713;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4727,499,0 chrVIII 450770 . A G 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=4.980;HaplotypeScore=12.8692;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.361;QD=24.83;ReadPosRankSum=1.696;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4817,517,0 chrVIII 451268 . T C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.713;QD=24.47;ReadPosRankSum=1.698;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2529,267,0 chrVIII 452951 . C A 42.97 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=156.0643;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=0.25;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:9:75,9,0 chrVIII 455744 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.85;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2118,219,0 chrVIII 455745 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.47;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2100,216,0 chrVIII 455862 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.084;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.7092;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.029;QD=21.38;ReadPosRankSum=2.633;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1957,204,0 chrVIII 456019 . G C 1987 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.33;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2020,207,0 chrVIII 456336 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.339;QD=24.34;ReadPosRankSum=1.696;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2443,258,0 chrVIII 456475 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3286,331,0 chrVIII 457580 . C T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=18.9374;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.53;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,261:266:99:5726,583,0 chrVIII 457647 . G A 5279.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.2674;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.70;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5279,562,0 chrVIII 459310 . C G 4438.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.12;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4438,486,0 chrVIII 461959 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.69;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3699,382,0 chrVIII 462502 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=4.771;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.028;QD=25.52;ReadPosRankSum=1.634;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4594,486,0 chrVIII 462825 . T G 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.079;QD=25.59;ReadPosRankSum=1.684;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5605,589,0 chrVIII 463432 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4346,468,0 chrVIII 463786 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:29:72:704,72,0 chrVIII 464855 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.69;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,153,0 chrVIII 465075 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1084,114,0 chrVIII 465579 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.63;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3947,432,0 chrVIII 465638 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.32;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2512,279,0 chrVIII 465684 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7766;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.08;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2342,249,0 chrVIII 465708 . T A 2591 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.07;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2624,267,0 chrVIII 465742 . C T 2127 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2160,243,0 chrVIII 465769 . C T 1264 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1297,147,0 chrVIII 465841 . T C 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.158;QD=7.05;ReadPosRankSum=1.423;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:12:110,12,0 chrVIII 465846 . A T 168.06 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=9.89;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:201,21,0 chrVIII 465996 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.33;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2031,210,0 chrVIII 466004 . C A 2191 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.92;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2224,228,0 chrVIII 466032 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=0.960;QD=15.02;ReadPosRankSum=1.607;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2121,225,0 chrVIII 466045 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.86;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2128,219,0 chrVIII 466048 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=15.12;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2180,228,0 chrVIII 466143 . A C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.142;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-1.193;QD=24.63;ReadPosRankSum=1.711;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4114,433,0 chrVIII 466240 . T G 4456.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=24.62;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4456,469,0 chrVIII 466269 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=22.91;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3505,363,0 chrVIII 466305 . A T 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=2.970;HaplotypeScore=6.5626;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-1.392;QD=19.91;ReadPosRankSum=2.417;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3040,324,0 chrVIII 466324 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;MQRankSum=-1.230;QD=17.98;ReadPosRankSum=1.708;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2640,282,0 chrVIII 466334 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;MQRankSum=-1.244;QD=17.20;ReadPosRankSum=1.708;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2475,261,0 chrVIII 466339 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=17.38;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2379,246,0 chrVIII 466361 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=17.13;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2209,240,0 chrVIII 466379 . G C 1604 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=16.04;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1637,180,0 chrVIII 466381 . A C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=3.038;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-0.357;QD=15.72;ReadPosRankSum=2.401;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1605,177,0 chrVIII 466403 . T C 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.480;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-1.732;QD=15.64;ReadPosRankSum=1.688;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1253,132,0 chrVIII 466472 . T G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=72.7521;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;MQRankSum=1.304;QD=18.00;ReadPosRankSum=1.615;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1635,171,0 chrVIII 466475 . A G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=76.9339;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.582;QD=16.97;ReadPosRankSum=1.694;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1594,171,0 chrVIII 466485 . A C 1703 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=83.8665;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=17.03;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1736,192,0 chrVIII 466650 . C A 1685 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=22.47;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1718,183,0 chrVIII 466657 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=21.93;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1634,171,0 chrVIII 466663 . G C 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=18.97;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1437,159,0 chrVIII 466717 . C G 866 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=16.04;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:899,102,0 chrVIII 466727 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=16.63;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:881,96,0 chrVIII 466785 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=24.33;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2028,213,0 chrVIII 466818 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.65;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3202,339,0 chrVIII 466868 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.67;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3110,327,0 chrVIII 466878 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.92;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3145,336,0 chrVIII 466929 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=16.96;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1882,201,0 chrVIII 466959 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=71.9841;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=1.661;QD=21.63;ReadPosRankSum=1.625;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2131,228,0 chrVIII 466968 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=104;Dels=0.00;FS=2.973;HaplotypeScore=73.1934;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=1.195;QD=20.63;ReadPosRankSum=2.071;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2179,228,0 chrVIII 467353 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1791,180,0 chrVIII 468037 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2205,231,0 chrVIII 468936 . T C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=117;Dels=0.00;FS=3.531;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.280;QD=26.63;ReadPosRankSum=1.702;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:3149,324,0 chrVIII 469661 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=2.699;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.893;QD=25.70;ReadPosRankSum=2.407;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2989,309,0 chrVIII 473884 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=25.10;ReadPosRankSum=2.302;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2543,267,0 chrVIII 478768 . C A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.8168;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.16;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3720,385,0 chrVIII 482776 . A G 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=260;Dels=0.00;FS=3.061;HaplotypeScore=18.9380;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.304;QD=23.64;ReadPosRankSum=1.692;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:6147,649,0 chrVIII 482896 . C G 7018.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=22.6302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.06;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:7018,736,0 chrVIII 483007 . T C 6467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=276;Dels=0.00;FS=6.329;HaplotypeScore=21.7885;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.029;QD=23.43;ReadPosRankSum=2.387;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:6467,670,0 chrVIII 483130 . A G 6492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=261;Dels=0.00;FS=2.850;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.428;QD=24.87;ReadPosRankSum=2.412;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:6492,682,0 chrVIII 483190 . C T 5167.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.14;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5167,529,0 chrVIII 483220 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.68;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3516,381,0 chrVIII 483295 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.007;QD=22.01;ReadPosRankSum=2.402;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3411,352,0 chrVIII 483396 . A C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.90;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3481,364,0 chrVIII 483796 . T C 5780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=256;Dels=0.00;FS=9.475;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.833;QD=22.58;ReadPosRankSum=2.401;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:5780,613,0 chrVIII 483978 . A G 5288.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.94;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5288,562,0 chrVIII 485700 . G A 4977.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.59;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4977,520,0 chrVIII 485969 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.49;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2955,303,0 chrVIII 485972 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.768;QD=20.36;ReadPosRankSum=1.680;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2761,297,0 chrVIII 487308 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.683;DP=145;Dels=0.00;FS=6.081;HaplotypeScore=12.4378;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-2.049;QD=22.12;ReadPosRankSum=2.951;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3240,348,0 chrVIII 491020 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=172;Dels=0.00;FS=13.143;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.382;QD=23.91;ReadPosRankSum=2.924;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:4113,450,0 chrVIII 492560 . T C 3040 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.94;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3073,330,0 chrVIII 496344 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2109,216,0 chrVIII 497213 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.37;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2931,300,0 chrVIII 498757 . G C 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=215;Dels=0.00;FS=3.806;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.715;QD=23.20;ReadPosRankSum=-0.572;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,208:215:99:4989,534,0 chrVIII 499348 . G T 5531.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4703;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.84;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5531,565,0 chrVIII 499886 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.34;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4625,490,0 chrVIII 500211 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=191;Dels=0.00;FS=5.245;HaplotypeScore=15.7942;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.307;QD=20.37;ReadPosRankSum=3.414;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:4,185:191:99:3891,400,0 chrVIII 500294 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3701,384,0 chrVIII 500928 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.24;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3281,331,0 chrVIII 501390 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.23;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2405,252,0 chrVIII 501912 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=7.509;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.407;QD=24.59;ReadPosRankSum=2.387;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2959,303,0 chrVIII 505427 . T G 2321 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2354,249,0 chrVIII 506933 . A T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4356,445,0 chrVIII 508827 . A T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.061;DP=75;Dels=0.00;FS=3.080;HaplotypeScore=11.4454;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=2.180;QD=0.17;ReadPosRankSum=1.061;SB=-5.538e+02 GT:AD:DP:GQ:PL 1/1:6,69:75:6:44,6,0 chrVIII 509227 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.8531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2105,219,0 chrVIII 509478 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.059;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5362;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.813;QD=24.25;ReadPosRankSum=0.837;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3662,355,0 chrVIII 509537 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3736,414,0 chrVIII 510388 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4202,456,0 chrVIII 510826 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.2982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.88;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4417,469,0 chrVIII 510985 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=188;Dels=0.00;FS=3.201;HaplotypeScore=7.3781;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.360;QD=23.52;ReadPosRankSum=1.713;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4422,474,0 chrVIII 512880 . A C 5824.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5824,610,0 chrVIII 513025 . T C 5111.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.72;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5111,558,0 chrVIII 514601 . A T 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.875;QD=18.99;ReadPosRankSum=2.401;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2957,318,0 chrVIII 514675 . A T 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.990;QD=21.21;ReadPosRankSum=1.670;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1221,123,0 chrVIII 514870 . A G 596 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:27:69:629,69,0 chrVIII 515104 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3346,343,0 chrVIII 516779 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.00;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2652,273,0 chrVIII 516811 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.39;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2700,288,0 chrVIII 517336 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2629,270,0 chrVIII 518179 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.8453;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.48;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4688,487,0 chrVIII 518458 . G A 5779.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5779,595,0 chrVIII 518542 . C G 4497.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.54;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4497,475,0 chrVIII 518911 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.44;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:877,90,0 chrVIII 518945 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.80;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1104,117,0 chrVIII 519006 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.12;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1113,120,0 chrVIII 519013 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.19;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1199,129,0 chrVIII 519077 . T A 1116 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-0.737;QD=12.83;ReadPosRankSum=1.692;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1149,120,0 chrVIII 519078 . G A 1070 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=12.02;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1103,114,0 chrVIII 519079 . G A 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=12.88;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1179,120,0 chrVIII 519269 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=25.59;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4324,448,0 chrVIII 519377 . T A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.10;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3558,378,0 chrVIII 519381 . C G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=22.68;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3606,387,0 chrVIII 519391 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=167;Dels=0.00;FS=13.044;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.187;QD=22.45;ReadPosRankSum=2.922;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3749,382,0 chrVIII 521047 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.8985;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.91;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4009,412,0 chrVIII 521185 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.66;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4241,433,0 chrVIII 521352 . C T 6143.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=19.2752;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.19;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6143,634,0 chrVIII 521408 . T C 7284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=22.2749;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.818;QD=23.73;ReadPosRankSum=1.721;SB=-3.641e+03 GT:AD:DP:GQ:PL 1/1:1,306:307:99:7284,760,0 chrVIII 522580 . C G 3160 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.94;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3193,328,0 chrVIII 522772 . A C 3184 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.49;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3217,339,0 chrVIII 522950 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.36;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2619,279,0 chrVIII 523239 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3983,406,0 chrVIII 523298 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3878,397,0 chrVIII 523454 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5348;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.36;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3093,318,0 chrVIII 523907 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3466,369,0 chrVIII 524210 . A C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=6.793;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.537;QD=23.36;ReadPosRankSum=2.251;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2953,309,0 chrVIII 524455 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.222;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.237;QD=24.00;ReadPosRankSum=1.666;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2577,267,0 chrVIII 525297 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=24.22;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1874,192,0 chrVIII 525398 . A T 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;MQRankSum=-0.764;QD=26.15;ReadPosRankSum=1.630;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1811,183,0 chrVIII 525441 . C A 605.02 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=43;Dels=0.00;FS=16.267;HaplotypeScore=4.4705;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-0.246;QD=14.07;ReadPosRankSum=2.823;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:5,38:43:26:638,26,0 chrVIII 525442 . A G 578.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=43;Dels=0.00;FS=18.593;HaplotypeScore=5.0065;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-1.454;QD=13.45;ReadPosRankSum=2.968;SB=-1.536e+02 GT:AD:DP:GQ:PL 1/1:5,36:43:4:609,4,0 chrVIII 525446 . A C 574.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;DP=46;Dels=0.00;FS=54.667;HaplotypeScore=5.7952;MLEAC=1;MLEAF=0.500;MQ=28.57;MQ0=0;MQRankSum=-0.738;QD=12.48;ReadPosRankSum=4.165;SB=-9.802e+01 GT:AD:DP:GQ:PL 0/1:12,34:46:28:604,0,28 chrVIII 525451 . T C 476.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;DP=47;Dels=0.00;FS=88.680;HaplotypeScore=4.0947;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=0.872;QD=10.13;ReadPosRankSum=3.059;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,33:47:99:506,0,210 chrVIII 525454 . G A 509.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=48;Dels=0.00;FS=101.393;HaplotypeScore=2.5721;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=0.011;QD=10.60;ReadPosRankSum=1.713;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,34:48:99:539,0,239 chrVIII 525457 . C A 536.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DP=49;Dels=0.00;FS=102.732;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=-0.918;QD=10.94;ReadPosRankSum=1.007;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,35:49:99:566,0,235 chrVIII 525464 . G A 350.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DP=43;Dels=0.00;FS=90.999;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=2;MQRankSum=0.124;QD=8.14;ReadPosRankSum=2.763;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,27:43:99:380,0,254 chrVIII 525465 . C G 335.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010;DP=43;Dels=0.00;FS=90.999;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=2;MQRankSum=0.014;QD=7.79;ReadPosRankSum=2.763;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,27:43:99:365,0,253 chrVIII 525466 . C T 327.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;DP=43;Dels=0.00;FS=90.999;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=2;MQRankSum=-0.179;QD=7.60;ReadPosRankSum=2.763;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,27:43:99:357,0,253 chrVIII 525470 . G C 345.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DP=45;Dels=0.00;FS=90.999;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=4;MQRankSum=0.619;QD=7.67;ReadPosRankSum=1.058;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,27:45:99:375,0,250 chrVIII 525472 . G A 372.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=46;Dels=0.00;FS=90.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=5;MQRankSum=1.911;QD=8.09;ReadPosRankSum=-0.289;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,27:46:99:402,0,251 chrVIII 525475 . G A 370.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;DP=47;Dels=0.00;FS=92.607;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=5;MQRankSum=1.054;QD=7.87;ReadPosRankSum=-2.575;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,28:47:99:400,0,228 chrVIII 525479 . T C 368.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;DP=47;Dels=0.00;FS=83.857;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=5;MQRankSum=0.709;QD=7.83;ReadPosRankSum=-3.071;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:20,27:47:99:398,0,252 chrVIII 525481 . A G 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;DP=47;Dels=0.00;FS=92.607;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=5;MQRankSum=-0.547;QD=7.81;ReadPosRankSum=-4.256;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,28:47:99:397,0,252 chrVIII 525485 . G A 368.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;DP=48;Dels=0.00;FS=92.607;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=6;MQRankSum=0.414;QD=7.67;ReadPosRankSum=-4.656;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,28:48:99:398,0,248 chrVIII 525486 . C T 359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;DP=48;Dels=0.00;FS=92.607;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=6;MQRankSum=-0.467;QD=7.48;ReadPosRankSum=-4.789;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,28:48:99:389,0,261 chrVIII 525487 . A G 369.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=48;Dels=0.00;FS=92.607;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=6;MQRankSum=0.200;QD=7.69;ReadPosRankSum=-4.816;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,28:48:99:399,0,258 chrVIII 525492 . A C 359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.865;DP=63;Dels=0.00;FS=112.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=6;MQRankSum=-0.491;QD=5.70;ReadPosRankSum=-5.107;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,43:63:99:389,0,261 chrVIII 525501 . G A 359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;DP=59;Dels=0.00;FS=107.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=6;MQRankSum=-2.552;QD=6.08;ReadPosRankSum=-4.267;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,39:59:99:389,0,283 chrVIII 525502 . T C 322.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;DP=59;Dels=0.00;FS=107.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=6;MQRankSum=0.958;QD=5.46;ReadPosRankSum=-3.984;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,39:59:99:352,0,257 chrVIII 525505 . G A 356.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DP=65;Dels=0.00;FS=114.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=6;MQRankSum=1.167;QD=5.48;ReadPosRankSum=-4.036;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,45:65:99:386,0,282 chrVIII 525511 . T C 396.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;DP=65;Dels=0.00;FS=114.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=6;MQRankSum=-1.096;QD=6.09;ReadPosRankSum=-2.699;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,45:65:99:426,0,268 chrVIII 525514 . A C 338.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;DP=66;Dels=0.00;FS=115.671;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=6;MQRankSum=-0.166;QD=5.12;ReadPosRankSum=-0.358;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,46:66:99:368,0,244 chrVIII 525517 . T C 353.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;DP=62;Dels=0.00;FS=122.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=6;MQRankSum=0.427;QD=5.69;ReadPosRankSum=1.533;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,43:62:99:383,0,283 chrVIII 525523 . C T 400.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=64;Dels=0.00;FS=124.991;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=6;MQRankSum=1.026;QD=6.25;ReadPosRankSum=3.412;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,45:64:99:430,0,274 chrVIII 525526 . G A 398.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DP=64;Dels=0.00;FS=124.991;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=6;MQRankSum=-0.093;QD=6.22;ReadPosRankSum=4.065;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,45:64:99:428,0,266 chrVIII 525530 . T A 380.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;DP=61;Dels=0.00;FS=110.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=6;MQRankSum=-1.273;QD=6.23;ReadPosRankSum=4.366;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,44:61:99:410,0,225 chrVIII 525533 . T C 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DP=57;Dels=0.00;FS=101.065;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=6;MQRankSum=0.605;QD=5.86;ReadPosRankSum=4.804;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,41:57:99:364,0,200 chrVIII 525535 . G A 200.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;DP=56;Dels=0.00;FS=93.989;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=6;MQRankSum=-0.177;QD=3.57;ReadPosRankSum=4.646;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:15,41:56:99:230,0,160 chrVIII 525537 . A T 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;DP=54;Dels=0.00;FS=78.670;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=6;MQRankSum=-0.058;QD=3.85;ReadPosRankSum=4.148;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,41:54:99:238,0,131 chrVIII 525538 . A G 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;DP=54;Dels=0.00;FS=78.670;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=6;MQRankSum=1.139;QD=4.41;ReadPosRankSum=4.119;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,41:54:99:268,0,119 chrVIII 525544 . C A 380 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=6;QD=6.79;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:6,50:56:42:413,42,0 chrVIII 525547 . C T 300 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=6;QD=5.36;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:6,50:56:39:333,39,0 chrVIII 525556 . G A 360 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=4;QD=6.55;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,51:55:42:393,42,0 chrVIII 525559 . T C 328 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=4;QD=6.31;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:4,48:52:42:361,42,0 chrVIII 525562 . A C 325 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=3;QD=6.50;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:3,47:50:42:358,42,0 chrVIII 525574 . T G 348 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=1;QD=7.57;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:42:381,42,0 chrVIII 525578 . G C 328 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=8.20;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:361,39,0 chrVIII 525579 . G A 342 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=8.55;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:375,39,0 chrVIII 525628 . T A 21.15 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;DP=16;Dels=0.00;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-0.318;QD=1.32;ReadPosRankSum=-1.588;SB=-4.311e+01 GT:AD:DP:GQ:PL 0/1:7,9:16:13:51,0,13 chrVIII 525631 . G T 20.92 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;QD=1.31;SB=-3.183e+01 GT:AD:DP:GQ:PL 1/1:0,9:16:6:52,6,0 chrVIII 525634 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.87;SB=-4.398e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:78,9,0 chrVIII 525635 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.19;SB=-4.398e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:83,9,0 chrVIII 525637 . T C 16.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;DP=16;Dels=0.00;FS=3.233;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=0.741;QD=1.01;ReadPosRankSum=2.329;SB=-4.311e+01 GT:AD:DP:GQ:PL 0/1:7,9:16:13:46,0,13 chrVIII 525644 . A C 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.587;DP=19;Dels=0.00;FS=2.645;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;MQRankSum=0.219;QD=1.51;ReadPosRankSum=2.236;SB=-4.176e+01 GT:AD:DP:GQ:PL 1/1:6,13:19:6:60,6,0 chrVIII 525649 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.8869;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=1.36;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,13:16:6:53,6,0 chrVIII 525658 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.734;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.8747;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.091;QD=1.41;ReadPosRankSum=1.369;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:6:51,6,0 chrVIII 525659 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.401;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.8800;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=-0.401;QD=1.52;ReadPosRankSum=0.401;SB=-4.176e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:6:51,6,0 chrVIII 525661 . A C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.8800;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=-0.158;QD=1.52;ReadPosRankSum=0.158;SB=1.24 GT:AD:DP:GQ:PL 1/1:1,10:13:6:51,6,0 chrVIII 525667 . C G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.8800;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=1.85;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:59,6,0 chrVIII 525672 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=1.72;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:57,6,0 chrVIII 525675 . C A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=1.78;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:58,6,0 chrVIII 525676 . T G 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=1.65;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:56,6,0 chrVIII 525679 . T C 30.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=2.05;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:62,6,0 chrVIII 525692 . T G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=1.98;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,11:13:6:57,6,0 chrVIII 525694 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=1.98;SB=-4.476e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:57,6,0 chrVIII 525700 . A T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=2.15;SB=-4.474e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:6:57,6,0 chrVIII 525703 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=2.31;SB=-2.371e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:52,6,0 chrVIII 525820 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=5.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrVIII 525838 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.87;MQ0=0;QD=1.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:50,6,0 chrVIII 525884 . T C 172.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=0;MQRankSum=-0.326;QD=2.39;ReadPosRankSum=2.381;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:2,70:72:21:205,21,0 chrVIII 525889 . A C 137.13 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=0;QD=1.93;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,71:71:18:170,18,0 chrVIII 525892 . C T 142.13 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=0;QD=1.92;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,74:74:18:175,18,0 chrVIII 525900 . G A 142.13 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=0;QD=1.92;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,74:74:18:175,18,0 chrVIII 525902 . A G 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=0;QD=1.66;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,74:74:18:156,18,0 chrVIII 525937 . C A 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,55:55:6:63,6,0 chrVIII 525940 . C T 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,51:51:6:61,6,0 chrVIII 525943 . G A 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=0;QD=0.55;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,51:52:6:60,6,0 chrVIII 526005 . C G 41.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=4.66;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:74,9,0 chrVIII 526080 . C A 3272.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.403;DP=230;Dels=0.00;FS=2.076;HaplotypeScore=15.8163;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=20;MQRankSum=3.213;QD=14.23;ReadPosRankSum=4.076;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:33,196:230:99:3272,273,0 chrVIII 526276 . C T 8655.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=19.8105;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=23.65;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:8655,913,0 chrVIII 526366 . C T 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=445;Dels=0.00;FS=105.113;HaplotypeScore=19.9329;MLEAC=1;MLEAF=0.500;MQ=39.40;MQ0=0;MQRankSum=1.546;QD=0.26;ReadPosRankSum=1.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:338,107:445:99:145,0,5596 chrVIII 526369 . G A 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DP=433;Dels=0.00;FS=92.419;HaplotypeScore=16.9516;MLEAC=1;MLEAF=0.500;MQ=39.24;MQ0=0;MQRankSum=0.522;QD=0.54;ReadPosRankSum=1.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:330,103:433:99:263,0,5533 chrVIII 526405 . G A 4506.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.029;DP=408;Dels=0.00;FS=0.468;HaplotypeScore=26.0224;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;MQRankSum=11.931;QD=11.04;ReadPosRankSum=1.888;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:95,312:408:35:4506,35,0 chrVIII 526414 . T A 3448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DP=361;Dels=0.00;FS=4.446;HaplotypeScore=9.1821;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=0;MQRankSum=12.395;QD=9.55;ReadPosRankSum=-1.078;SB=-1.245e+03 GT:AD:DP:GQ:PL 0/1:108,253:361:99:3448,0,252 chrVIII 526420 . C T 3210.99 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.533;DP=345;Dels=0.00;FS=6.338;HaplotypeScore=6.7436;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=1;MQRankSum=11.728;QD=9.31;ReadPosRankSum=-3.559;SB=-9.310e+02 GT:AD:DP:GQ:PL 0/1:118,226:345:99:3241,0,348 chrVIII 526423 . T A 2995.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;DP=343;Dels=0.00;FS=9.741;HaplotypeScore=5.9550;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=1;MQRankSum=12.204;QD=8.73;ReadPosRankSum=-5.529;SB=-8.240e+02 GT:AD:DP:GQ:PL 0/1:116,227:343:99:3025,0,349 chrVIII 526453 . T C,G 2860.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.381;DP=260;Dels=0.00;FS=3.145;HaplotypeScore=3.2992;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.73;MQ0=8;MQRankSum=-0.687;QD=11.00;ReadPosRankSum=2.313;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/2:2,131,127:260:99:2920,772,517,2148,0,2049 chrVIII 526462 . T C 1921.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DP=257;Dels=0.00;FS=131.281;HaplotypeScore=19.5543;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=8;MQRankSum=12.220;QD=7.47;ReadPosRankSum=-3.996;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:131,126:257:99:1951,0,627 chrVIII 526474 . T A 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.629;DP=170;Dels=0.00;FS=55.349;HaplotypeScore=25.5249;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=14;MQRankSum=8.360;QD=2.56;ReadPosRankSum=8.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,39:170:99:466,0,860 chrVIII 526476 . G C 221.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=161;Dels=0.00;FS=50.164;HaplotypeScore=36.2820;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=14;MQRankSum=8.152;QD=1.37;ReadPosRankSum=8.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,38:161:99:251,0,791 chrVIII 526477 . T A 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=160;Dels=0.00;FS=60.542;HaplotypeScore=36.2820;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=15;MQRankSum=6.356;QD=0.86;ReadPosRankSum=6.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,43:160:99:167,0,802 chrVIII 526479 . A C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DP=152;Dels=0.00;FS=51.600;HaplotypeScore=38.9901;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=16;MQRankSum=8.119;QD=0.37;ReadPosRankSum=8.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,38:152:86:86,0,794 chrVIII 526480 . G T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=150;Dels=0.00;FS=59.290;HaplotypeScore=38.0960;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=17;MQRankSum=8.048;QD=0.41;ReadPosRankSum=8.558;SB=1.75 GT:AD:DP:GQ:PL 0/1:103,39:150:92:92,0,727 chrVIII 526481 . G A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;DP=145;Dels=0.00;FS=49.219;HaplotypeScore=41.3856;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=17;MQRankSum=7.909;QD=0.76;ReadPosRankSum=8.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,38:145:99:140,0,715 chrVIII 526484 . T A 575.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;DP=134;Dels=0.00;FS=59.018;HaplotypeScore=39.6071;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=18;MQRankSum=7.447;QD=4.29;ReadPosRankSum=7.220;SB=-4.732e-01 GT:AD:DP:GQ:PL 0/1:89,40:134:99:605,0,530 chrVIII 526485 . T C 583.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.357;DP=131;Dels=0.00;FS=51.559;HaplotypeScore=42.8968;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=18;MQRankSum=8.213;QD=4.45;ReadPosRankSum=7.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,38:131:99:613,0,564 chrVIII 526486 . G C 574.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;DP=129;Dels=0.00;FS=56.997;HaplotypeScore=42.1081;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=18;MQRankSum=7.658;QD=4.45;ReadPosRankSum=7.015;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:82,38:129:99:604,0,494 chrVIII 526489 . T C 560.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=126;Dels=0.00;FS=32.454;HaplotypeScore=53.4586;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=18;MQRankSum=6.068;QD=4.44;ReadPosRankSum=4.324;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:77,46:126:99:590,0,466 chrVIII 526492 . T A 468.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;DP=123;Dels=0.00;FS=52.861;HaplotypeScore=57.6974;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=19;MQRankSum=7.002;QD=3.80;ReadPosRankSum=4.082;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:75,39:123:99:498,0,412 chrVIII 526495 . A T 445.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.690;DP=180;Dels=0.00;FS=19.068;HaplotypeScore=116.8784;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=19;MQRankSum=6.850;QD=2.47;ReadPosRankSum=6.459;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,38:180:99:475,0,353 chrVIII 526498 . T C 572.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=175;Dels=0.00;FS=3.798;HaplotypeScore=106.3557;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=19;MQRankSum=3.367;QD=3.27;ReadPosRankSum=5.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,55:175:99:602,0,231 chrVIII 526501 . C T 584.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.910;DP=181;Dels=0.02;FS=3.951;HaplotypeScore=105.5729;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=19;MQRankSum=3.199;QD=3.23;ReadPosRankSum=3.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,64:178:99:614,0,207 chrVIII 526525 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;DP=202;Dels=0.00;FS=63.440;HaplotypeScore=18.7557;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=18;MQRankSum=-4.282;QD=0.12;ReadPosRankSum=1.747;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:152,50:202:54:54,0,1228 chrVIII 526540 . G A 1260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DP=199;Dels=0.00;FS=45.238;HaplotypeScore=30.9607;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=14;MQRankSum=5.168;QD=6.33;ReadPosRankSum=5.494;SB=-7.017e+00 GT:AD:DP:GQ:PL 0/1:51,148:199:77:1290,0,77 chrVIII 526549 . T A 1376 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DP=188;Dels=0.00;FS=61.452;HaplotypeScore=37.6318;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=12;MQRankSum=4.563;QD=7.32;ReadPosRankSum=5.457;SB=-7.007e+00 GT:AD:DP:GQ:PL 1/1:26,148:188:70:1409,70,0 chrVIII 526552 . G C 1591 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.6590;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=12;QD=8.94;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,176:178:99:1624,197,0 chrVIII 526555 . C T 1385 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.155;DP=174;Dels=0.00;FS=16.347;HaplotypeScore=14.6286;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=15;MQRankSum=3.682;QD=7.96;ReadPosRankSum=3.773;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:34,140:174:82:1418,82,0 chrVIII 526558 . T A 1375 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=176;Dels=0.00;FS=10.007;HaplotypeScore=5.3154;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=18;MQRankSum=2.925;QD=7.81;ReadPosRankSum=3.319;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:36,140:176:84:1408,84,0 chrVIII 526585 . T C 1434 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=14;QD=13.92;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:13,90:103:99:1467,185,0 chrVIII 526588 . T G 1423 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=13;MQRankSum=1.141;QD=15.14;ReadPosRankSum=1.659;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1456,151,0 chrVIII 526594 . C T 1242 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=13;QD=15.92;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:13,65:78:99:1275,158,0 chrVIII 526597 . T C 1028 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=13;QD=14.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:13,59:72:99:1061,134,0 chrVIII 526615 . G A 198.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.13;MQ0=12;MQRankSum=0.075;QD=6.85;ReadPosRankSum=1.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,15:29:4:228,0,4 chrVIII 526819 . T C 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.433;DP=53;Dels=0.00;FS=1.875;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=16.83;MQ0=29;MQRankSum=1.700;QD=0.64;ReadPosRankSum=-1.500;SB=-2.372e+01 GT:AD:DP:GQ:PL 1/1:35,18:53:9:66,9,0 chrVIII 526855 . T C 594 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=8;QD=11.00;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:627,69,0 chrVIII 526858 . T G 569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=52;Dels=0.00;FS=9.161;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=6;MQRankSum=3.255;QD=10.94;ReadPosRankSum=3.255;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:8,43:52:69:602,69,0 chrVIII 526885 . A G 588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.370;DP=47;Dels=0.00;FS=9.588;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=1;MQRankSum=-0.721;QD=12.51;ReadPosRankSum=3.255;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:4,43:47:69:621,69,0 chrVIII 527128 . T G 280 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.53;MQ0=11;QD=10.77;SB=-9.100e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:313,36,0 chrVIII 527169 . G C 225.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.53;MQ0=11;MQRankSum=-1.273;QD=8.67;ReadPosRankSum=0.116;SB=-9.055e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:12:258,12,0 chrVIII 540866 . A T 701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DP=560;Dels=0.00;FS=43.850;HaplotypeScore=18.4937;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=44;MQRankSum=1.576;QD=1.25;ReadPosRankSum=-1.342;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:454,105:560:99:731,0,7944 chrVIII 540911 . C T 1212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DP=612;Dels=0.00;FS=13.778;HaplotypeScore=30.8486;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=6;MQRankSum=-8.180;QD=1.98;ReadPosRankSum=3.111;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:486,124:612:99:1242,0,9159 chrVIII 540930 . C G 1579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.584;DP=586;Dels=0.00;FS=0.000;HaplotypeScore=43.3431;MLEAC=1;MLEAF=0.500;MQ=33.09;MQ0=7;MQRankSum=-2.324;QD=2.69;ReadPosRankSum=-0.599;SB=-1.083e+03 GT:AD:DP:GQ:PL 0/1:435,143:586:99:1609,0,8302 chrVIII 540967 . C T 3298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.872;DP=571;Dels=0.00;FS=0.657;HaplotypeScore=49.5685;MLEAC=1;MLEAF=0.500;MQ=32.51;MQ0=10;MQRankSum=-0.191;QD=5.78;ReadPosRankSum=1.055;SB=-1.828e+03 GT:AD:DP:GQ:PL 0/1:356,212:571:99:3298,0,6225 chrVIII 541193 . C T 2719.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.938;DP=549;Dels=0.00;FS=1.501;HaplotypeScore=56.7465;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=54;MQRankSum=3.096;QD=4.95;ReadPosRankSum=0.783;SB=-1.550e+03 GT:AD:DP:GQ:PL 0/1:353,192:549:99:2749,0,5057 chrVIII 541428 . C G 2045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;DP=509;Dels=0.00;FS=0.808;HaplotypeScore=25.7642;MLEAC=1;MLEAF=0.500;MQ=33.70;MQ0=68;MQRankSum=1.160;QD=4.02;ReadPosRankSum=-0.609;SB=-8.790e+02 GT:AD:DP:GQ:PL 0/1:344,157:509:99:2075,0,5077 chrVIII 541460 . A C 3084.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.089;DP=434;Dels=0.00;FS=3.932;HaplotypeScore=33.4480;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=128;MQRankSum=2.234;QD=7.11;ReadPosRankSum=-1.767;SB=-9.830e+02 GT:AD:DP:GQ:PL 0/1:183,249:434:99:3114,0,1306 chrVIII 541686 . C A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=2;MLEAF=1.00;MQ=3.96;MQ0=327;MQRankSum=0.925;QD=0.15;ReadPosRankSum=-0.185;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:174,164:339:9:82,9,0 chrVIII 541800 . T C 2257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=25.5887;MLEAC=2;MLEAF=1.00;MQ=12.94;MQ0=211;MQRankSum=-2.051;QD=5.76;ReadPosRankSum=3.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,387:392:99:2290,258,0 chrVIII 543353 . C G 793.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.055;DP=485;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=11.94;MQ0=293;MQRankSum=0.597;QD=1.64;ReadPosRankSum=0.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:296,185:485:99:823,0,640 chrVIII 549800 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrVIII 549801 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrVIII 550281 . A G 919 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=105;QD=6.25;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:952,102,0 chrVIII 551583 . T C 2152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;DP=241;Dels=0.00;FS=1.071;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=33;MQRankSum=0.500;QD=8.93;ReadPosRankSum=0.554;SB=-9.930e+02 GT:AD:DP:GQ:PL 0/1:113,127:241:99:2182,0,1425 chrVIII 551597 . G A 518.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.206;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=44;MQRankSum=-0.509;QD=2.02;ReadPosRankSum=-1.877;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:191,63:256:99:548,0,2847 chrVIII 551771 . A C 1855.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=7.5085;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=125;MQRankSum=-0.822;QD=6.22;ReadPosRankSum=1.894;SB=-1.238e+03 GT:AD:DP:GQ:PL 0/1:75,222:298:99:1885,0,458 chrVIII 553473 . C G 1565.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.961;DP=506;Dels=0.00;FS=0.878;HaplotypeScore=17.1321;MLEAC=1;MLEAF=0.500;MQ=43.41;MQ0=126;MQRankSum=-0.450;QD=3.09;ReadPosRankSum=2.034;SB=-7.890e+02 GT:AD:DP:GQ:PL 0/1:367,135:506:99:1595,0,5836 chrVIII 553644 . A G 1780.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.011;DP=608;Dels=0.00;FS=0.380;HaplotypeScore=51.6238;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=4.348;QD=2.93;ReadPosRankSum=-2.629;SB=-5.750e+02 GT:AD:DP:GQ:PL 0/1:470,137:608:99:1810,0,10932 chrVIII 553996 . G A 3948.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.143;DP=276;Dels=0.00;FS=3.932;HaplotypeScore=20.2868;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.611;QD=14.30;ReadPosRankSum=1.064;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:69,207:276:99:3948,0,957 chrVIII 554135 . G A 405 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=0;QD=11.91;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:45:438,45,0 chrVIII 554142 . G A 412 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=12.87;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:45:445,45,0 chrVIII 554143 . T A 408 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=12.75;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:45:441,45,0 chrVIII 554151 . T G 392 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=11.88;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:45:425,45,0 chrVIII 554157 . T C 462 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=13.59;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:51:495,51,0 chrVIII 554162 . C T 414 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=12.18;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:45:447,45,0 chrVIII 554170 . T C 325 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=11.21;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:358,42,0 chrVIII 554171 . C T 324 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=11.17;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:357,42,0 chrVIII 554202 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=14.46;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:438,45,0 chrVIII 554298 . T A 1359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=8;MQRankSum=-0.866;QD=16.18;ReadPosRankSum=1.641;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1392,144,0 chrVIII 554362 . A T 4409.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=201;Dels=0.00;FS=11.739;HaplotypeScore=7.1796;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=7;MQRankSum=0.714;QD=21.94;ReadPosRankSum=1.661;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4409,463,0 chrVIII 554389 . A G 5194.01 filter AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.7099;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=8;QD=22.01;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,232:236:99:5194,585,0 chrVIII 555454 . T C 1526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.560;DP=878;Dels=0.00;FS=46.490;HaplotypeScore=94.9919;MLEAC=1;MLEAF=0.500;MQ=50.50;MQ0=16;MQRankSum=-17.395;QD=1.74;ReadPosRankSum=1.068;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:666,206:878:99:1556,0,13917 chrVIII 555556 . T A 3194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;DP=874;Dels=0.00;FS=2.359;HaplotypeScore=58.5741;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=4;MQRankSum=10.379;QD=3.65;ReadPosRankSum=1.238;SB=-1.568e+03 GT:AD:DP:GQ:PL 0/1:656,216:874:99:3224,0,10392 chrVIII 555736 . C T 4782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.582;DP=662;Dels=0.00;FS=8.162;HaplotypeScore=25.1750;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=12;MQRankSum=-16.240;QD=7.22;ReadPosRankSum=-0.667;SB=-2.885e+03 GT:AD:DP:GQ:PL 0/1:171,489:662:99:4782,0,2716 chrVIII 555742 . A G 4450.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;DP=648;Dels=0.00;FS=3.556;HaplotypeScore=16.8013;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=12;MQRankSum=-16.550;QD=6.87;ReadPosRankSum=-0.670;SB=-2.695e+03 GT:AD:DP:GQ:PL 0/1:174,474:648:99:4450,0,2897 chrVIII 555748 . C T 4157.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=618;Dels=0.00;FS=6.349;HaplotypeScore=14.5675;MLEAC=1;MLEAF=0.500;MQ=38.25;MQ0=10;MQRankSum=-16.418;QD=6.73;ReadPosRankSum=-1.946;SB=-2.381e+03 GT:AD:DP:GQ:PL 0/1:160,458:618:99:4157,0,2731 chrVIII 555751 . C T 4073.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.349;DP=623;Dels=0.00;FS=4.929;HaplotypeScore=15.3561;MLEAC=1;MLEAF=0.500;MQ=39.55;MQ0=10;MQRankSum=-16.164;QD=6.54;ReadPosRankSum=-1.954;SB=-2.464e+03 GT:AD:DP:GQ:PL 0/1:163,459:623:99:4073,0,2663 chrVIII 555754 . T A 4130.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DP=604;Dels=0.00;FS=12.329;HaplotypeScore=19.2561;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=8;MQRankSum=-15.842;QD=6.84;ReadPosRankSum=-0.992;SB=-2.138e+03 GT:AD:DP:GQ:PL 0/1:166,438:604:99:4130,0,2741 chrVIII 555840 . G A 5946.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.309;DP=547;Dels=0.00;FS=12.560;HaplotypeScore=24.1066;MLEAC=1;MLEAF=0.500;MQ=47.76;MQ0=4;MQRankSum=-6.989;QD=10.87;ReadPosRankSum=-0.984;SB=-2.198e+03 GT:AD:DP:GQ:PL 0/1:152,395:547:99:5946,0,2662 chrVIII 555849 . C G 5979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=558;Dels=0.00;FS=30.322;HaplotypeScore=18.2273;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=4;MQRankSum=-8.746;QD=10.72;ReadPosRankSum=1.293;SB=-2.197e+03 GT:AD:DP:GQ:PL 0/1:158,399:558:99:5979,0,2512 chrVIII 555860 . A G 5933.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DP=564;Dels=0.00;FS=24.386;HaplotypeScore=11.9867;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=4;MQRankSum=-9.407;QD=10.52;ReadPosRankSum=3.383;SB=-2.453e+03 GT:AD:DP:GQ:PL 0/1:163,399:564:99:5933,0,2609 chrVIII 555862 . T G 5891.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.669;DP=556;Dels=0.00;FS=17.788;HaplotypeScore=17.6520;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=4;MQRankSum=-8.718;QD=10.60;ReadPosRankSum=2.321;SB=-2.474e+03 GT:AD:DP:GQ:PL 0/1:154,401:556:99:5891,0,2565 chrVIII 555971 . T A 5229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=352;Dels=0.00;FS=3.886;HaplotypeScore=14.4776;MLEAC=1;MLEAF=0.500;MQ=53.21;MQ0=0;MQRankSum=-4.423;QD=14.86;ReadPosRankSum=-1.344;SB=-2.877e+03 GT:AD:DP:GQ:PL 0/1:100,252:352:99:5229,0,1631 chrVIII 555993 . G A 5025.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.625;DP=342;Dels=0.00;FS=16.893;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-3.883;QD=14.69;ReadPosRankSum=-0.135;SB=-1.825e+03 GT:AD:DP:GQ:PL 0/1:106,236:342:99:5025,0,1777 chrVIII 556005 . T A 8768.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=24.63;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:0,356:356:99:8768,892,0 chrVIII 556024 . C A 5272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;DP=367;Dels=0.00;FS=29.808;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-3.404;QD=14.37;ReadPosRankSum=-0.426;SB=-8.230e+02 GT:AD:DP:GQ:PL 0/1:105,262:367:99:5272,0,1636 chrVIII 556178 . A G 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.882;DP=276;Dels=0.00;FS=251.446;HaplotypeScore=100.0704;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=6;MQRankSum=-7.874;QD=0.87;ReadPosRankSum=2.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,100:276:99:271,0,3045 chrVIII 556188 . A C 550.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.247;DP=293;Dels=0.00;FS=276.724;HaplotypeScore=85.3580;MLEAC=1;MLEAF=0.500;MQ=42.03;MQ0=6;MQRankSum=-5.813;QD=1.88;ReadPosRankSum=0.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,128:293:99:580,0,3020 chrVIII 556225 . A T 2055.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;DP=330;Dels=0.00;FS=17.146;HaplotypeScore=172.1449;MLEAC=1;MLEAF=0.500;MQ=36.34;MQ0=8;MQRankSum=-1.728;QD=6.23;ReadPosRankSum=-0.138;SB=-5.350e+02 GT:AD:DP:GQ:PL 0/1:100,161:330:99:2085,0,1574 chrVIII 556272 . G A 899.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;DP=366;Dels=0.00;FS=8.294;HaplotypeScore=101.6360;MLEAC=1;MLEAF=0.500;MQ=34.03;MQ0=2;MQRankSum=4.552;QD=2.46;ReadPosRankSum=-1.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:292,71:365:99:929,0,4504 chrVIII 556318 . T G 2584.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.942;DP=294;Dels=0.00;FS=58.466;HaplotypeScore=63.3428;MLEAC=1;MLEAF=0.500;MQ=31.54;MQ0=4;MQRankSum=-1.639;QD=8.79;ReadPosRankSum=0.269;SB=-1.396e+03 GT:AD:DP:GQ:PL 0/1:133,161:294:99:2614,0,2388 chrVIII 556324 . G C 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.875;DP=288;Dels=0.00;FS=57.444;HaplotypeScore=53.2872;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=5;MQRankSum=0.140;QD=0.25;ReadPosRankSum=-4.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:239,44:288:99:102,0,4801 chrVIII 556341 . A T 1682.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=289;Dels=0.00;FS=2.054;HaplotypeScore=14.4731;MLEAC=1;MLEAF=0.500;MQ=31.01;MQ0=11;MQRankSum=-2.262;QD=5.82;ReadPosRankSum=4.094;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:179,110:289:99:1712,0,3006 chrVIII 556344 . G A 1592.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.741;DP=299;Dels=0.00;FS=2.034;HaplotypeScore=17.5731;MLEAC=1;MLEAF=0.500;MQ=31.48;MQ0=11;MQRankSum=-1.451;QD=5.32;ReadPosRankSum=3.576;SB=-9.350e+02 GT:AD:DP:GQ:PL 0/1:186,110:299:99:1622,0,3040 chrVIII 556369 . G A 1358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=29.4970;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=14;MQRankSum=-1.699;QD=3.77;ReadPosRankSum=-1.360;SB=-6.850e+02 GT:AD:DP:GQ:PL 0/1:257,101:360:99:1388,0,4520 chrVIII 556384 . C T 918.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DP=458;Dels=0.00;FS=0.000;HaplotypeScore=41.7980;MLEAC=1;MLEAF=0.500;MQ=35.47;MQ0=17;MQRankSum=-1.703;QD=2.00;ReadPosRankSum=-2.994;SB=-4.360e+02 GT:AD:DP:GQ:PL 0/1:337,119:458:99:948,0,6235 chrVIII 556442 . C G 731.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DP=527;Dels=0.00;FS=19.794;HaplotypeScore=208.8448;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=10;MQRankSum=1.064;QD=1.39;ReadPosRankSum=6.289;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:402,73:526:99:761,0,6288 chrVIII 556481 . C G 785.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=321;Dels=0.00;FS=157.834;HaplotypeScore=403.5367;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=1;MQRankSum=5.654;QD=2.45;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,71:321:99:815,0,2069 chrVIII 556487 . G T 1448.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=341.0683;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=0;MQRankSum=-1.211;QD=6.67;ReadPosRankSum=5.397;SB=-8.050e+02 GT:AD:DP:GQ:PL 0/1:29,163:217:99:1478,0,352 chrVIII 556492 . T G 1531.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DP=212;Dels=0.00;FS=0.730;HaplotypeScore=399.4872;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=-1.306;QD=7.22;ReadPosRankSum=7.122;SB=-9.580e+02 GT:AD:DP:GQ:PL 0/1:33,179:212:99:1561,0,268 chrVIII 556494 . A G 1596.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DP=209;Dels=0.00;FS=1.760;HaplotypeScore=377.0787;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=0;MQRankSum=-2.162;QD=7.64;ReadPosRankSum=6.630;SB=-9.280e+02 GT:AD:DP:GQ:PL 0/1:26,181:209:99:1626,0,190 chrVIII 556496 . A G 1599.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=211;Dels=0.00;FS=407.134;HaplotypeScore=382.0870;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=3.065;QD=7.58;ReadPosRankSum=2.675;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:95,116:211:99:1629,0,173 chrVIII 556501 . A G 1515.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;DP=231;Dels=0.00;FS=504.583;HaplotypeScore=398.4215;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=0;MQRankSum=3.626;QD=6.56;ReadPosRankSum=4.350;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:109,122:231:67:1545,0,67 chrVIII 556502 . G A 394.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.065;DP=230;Dels=0.00;FS=158.651;HaplotypeScore=413.8176;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=5.053;QD=1.71;ReadPosRankSum=2.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,56:230:99:424,0,1155 chrVIII 556505 . T C 464.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.135;DP=229;Dels=0.00;FS=165.152;HaplotypeScore=366.6320;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=6.068;QD=2.03;ReadPosRankSum=2.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,56:229:99:494,0,1138 chrVIII 556555 . G A 684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=358;Dels=0.00;FS=2.307;HaplotypeScore=107.3290;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=13;MQRankSum=-2.806;QD=1.91;ReadPosRankSum=-1.558;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:197,158:358:99:714,0,1796 chrVIII 556562 . C T 751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DP=383;Dels=0.00;FS=54.229;HaplotypeScore=52.8003;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=15;MQRankSum=-5.199;QD=1.96;ReadPosRankSum=-0.449;SB=-5.790e+02 GT:AD:DP:GQ:PL 0/1:209,174:383:99:781,0,1951 chrVIII 556648 . A G 625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;DP=587;Dels=0.03;FS=96.470;HaplotypeScore=415.1042;MLEAC=1;MLEAF=0.500;MQ=20.40;MQ0=8;MQRankSum=-4.349;QD=1.06;ReadPosRankSum=3.720;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:371,187:568:99:655,0,2756 chrVIII 556650 . C T 2451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.333;DP=587;Dels=0.03;FS=155.608;HaplotypeScore=433.6602;MLEAC=1;MLEAF=0.500;MQ=20.25;MQ0=7;MQRankSum=5.823;QD=4.18;ReadPosRankSum=-4.774;SB=-4.502e+01 GT:AD:DP:GQ:PL 0/1:140,426:568:99:2481,0,564 chrVIII 556702 . A G 363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;DP=637;Dels=0.00;FS=6.257;HaplotypeScore=59.1441;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=20;MQRankSum=7.114;QD=0.57;ReadPosRankSum=-2.009;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:588,47:637:99:393,0,3398 chrVIII 556706 . G A 261.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.895;DP=643;Dels=0.00;FS=6.539;HaplotypeScore=67.9504;MLEAC=1;MLEAF=0.500;MQ=18.88;MQ0=17;MQRankSum=6.898;QD=0.41;ReadPosRankSum=-1.613;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:599,42:643:99:291,0,3227 chrVIII 556718 . A G 449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;DP=532;Dels=0.00;FS=16.156;HaplotypeScore=51.7201;MLEAC=1;MLEAF=0.500;MQ=18.36;MQ0=14;MQRankSum=6.608;QD=0.84;ReadPosRankSum=-2.260;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:448,83:532:99:479,0,2123 chrVIII 556764 . G A 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.608;DP=315;Dels=0.00;FS=194.444;HaplotypeScore=133.6048;MLEAC=1;MLEAF=0.500;MQ=15.36;MQ0=6;MQRankSum=4.208;QD=0.36;ReadPosRankSum=0.270;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:217,97:315:99:142,0,638 chrVIII 556767 . G A 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.860;DP=329;Dels=0.00;FS=64.416;HaplotypeScore=129.0062;MLEAC=1;MLEAF=0.500;MQ=15.34;MQ0=4;MQRankSum=5.659;QD=0.19;ReadPosRankSum=1.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,33:329:91:91,0,713 chrVIII 556769 . G A 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.243;DP=321;Dels=0.00;FS=203.459;HaplotypeScore=125.3699;MLEAC=1;MLEAF=0.500;MQ=15.37;MQ0=4;MQRankSum=4.891;QD=0.37;ReadPosRankSum=3.388;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:208,113:321:99:150,0,632 chrVIII 556784 . G A 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DP=337;Dels=0.00;FS=21.974;HaplotypeScore=118.4105;MLEAC=1;MLEAF=0.500;MQ=15.24;MQ0=5;MQRankSum=5.983;QD=0.44;ReadPosRankSum=3.538;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:290,47:337:99:177,0,635 chrVIII 556785 . G T 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;DP=335;Dels=0.00;FS=32.323;HaplotypeScore=117.6765;MLEAC=1;MLEAF=0.500;MQ=15.28;MQ0=5;MQRankSum=5.079;QD=0.51;ReadPosRankSum=5.179;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:200,45:335:99:200,0,494 chrVIII 556808 . G A 537.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=301;Dels=0.00;FS=26.869;HaplotypeScore=338.2132;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=3;MQRankSum=-3.255;QD=1.78;ReadPosRankSum=4.431;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:88,207:301:42:567,0,42 chrVIII 556812 . A G,T 622.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.342;DP=272;Dels=0.03;FS=46.520;HaplotypeScore=213.7144;MLEAC=1,1;MLEAF=0.500,0.500;MQ=16.94;MQ0=1;MQRankSum=-3.483;QD=2.29;ReadPosRankSum=4.521;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/2:9,65,189:264:99:682,359,314,323,0,278 chrVIII 556813 . A G,T 565.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.736;DP=268;Dels=0.00;FS=57.440;HaplotypeScore=178.7555;MLEAC=1,1;MLEAF=0.500,0.500;MQ=16.82;MQ0=1;MQRankSum=-4.686;QD=2.11;ReadPosRankSum=2.947;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/2:16,211,41:268:99:625,230,203,374,0,362 chrVIII 556826 . A T 222.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.214;DP=302;Dels=0.04;FS=0.000;HaplotypeScore=578.2142;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=0;MQRankSum=-4.374;QD=0.74;ReadPosRankSum=-3.458;SB=-7.141e+00 GT:AD:DP:GQ:PL 0/1:179,106:291:12:252,0,12 chrVIII 556939 . T G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DP=140;Dels=0.05;FS=14.606;HaplotypeScore=282.4472;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=8;MQRankSum=2.047;QD=0.29;ReadPosRankSum=1.731;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:107,25:133:42:71,0,42 chrVIII 556984 . T G 683.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.067;DP=154;Dels=0.00;FS=0.806;HaplotypeScore=30.9199;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=19;MQRankSum=-1.474;QD=4.44;ReadPosRankSum=5.142;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:68,86:154:29:713,0,29 chrVIII 560477 . T C 261 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=7.08;MQ0=199;MQRankSum=6.335;QD=0.92;ReadPosRankSum=-4.609;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:243,39:283:33:294,33,0 chrVIII 562637 . T G 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=36.2603;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=11;MQRankSum=0.357;QD=0.87;ReadPosRankSum=2.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,16:79:99:99,0,216 chrVIII 562639 . T G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=28.6904;MLEAC=1;MLEAF=0.500;MQ=20.15;MQ0=10;MQRankSum=-0.060;QD=0.61;ReadPosRankSum=0.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,13:59:66:66,0,170 chrX 15923 . C G 123.13 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.06;MQ0=109;QD=1.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,121:122:18:156,18,0 chrX 18717 . G C 368 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.60;MQ0=71;QD=4.28;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:42:401,42,0 chrX 18808 . C G 384 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=20;QD=9.85;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:45:417,45,0 chrX 18819 . T G 421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=44;Dels=0.00;FS=14.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=19;MQRankSum=0.451;QD=9.57;ReadPosRankSum=2.254;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:2,42:44:48:454,48,0 chrX 18821 . A C 492 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=19;QD=10.70;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:46:57:525,57,0 chrX 18842 . T C 1015 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.97;MQ0=21;QD=15.62;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1048,117,0 chrX 18871 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DP=60;Dels=0.00;FS=6.351;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=16;MQRankSum=-1.957;QD=0.28;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,10:60:47:47,0,760 chrX 18896 . A G 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=1;MLEAF=0.500;MQ=26.89;MQ0=3;MQRankSum=-1.368;QD=1.69;ReadPosRankSum=3.191;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:25,10:35:89:89,0,395 chrX 18898 . A G 582 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=32;Dels=0.00;FS=18.146;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=3;MQRankSum=-2.041;QD=18.19;ReadPosRankSum=2.757;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:3,29:32:72:615,72,0 chrX 18900 . A G 579 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=29;Dels=0.00;FS=15.119;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=3;MQRankSum=0.625;QD=19.97;ReadPosRankSum=2.261;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:72:612,72,0 chrX 18906 . A G 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=27;Dels=0.00;FS=15.580;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=3;MQRankSum=1.317;QD=11.89;ReadPosRankSum=-1.868;SB=-6.451e-03 GT:AD:DP:GQ:PL 0/1:11,16:27:99:351,0,99 chrX 19071 . C T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.4128;MLEAC=1;MLEAF=0.500;MQ=13.61;MQ0=33;MQRankSum=2.333;QD=2.04;ReadPosRankSum=-2.475;SB=-6.855e-03 GT:AD:DP:GQ:PL 0/1:19,28:48:38:128,0,38 chrX 19679 . C T 777 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=3;QD=22.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:87:810,87,0 chrX 19709 . C A 780 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=11;QD=18.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:87:813,87,0 chrX 19871 . C A 362.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DP=77;Dels=0.00;FS=30.934;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=15.57;MQ0=45;MQRankSum=0.194;QD=4.71;ReadPosRankSum=0.129;SB=-2.247e+01 GT:AD:DP:GQ:PL 0/1:7,70:77:1:391,0,1 chrX 19946 . T C 12.29 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=6.39;MQ0=45;MQRankSum=-0.731;QD=0.25;ReadPosRankSum=0.731;SB=-1.266e+00 GT:AD:DP:GQ:PL 0/1:4,45:50:21:42,0,21 chrX 20033 . C T 14.20 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.01;MQ0=43;MQRankSum=0.727;QD=0.30;ReadPosRankSum=-0.727;SB=0.020 GT:AD:DP:GQ:PL 0/1:37,9:47:19:44,0,19 chrX 20063 . T C 12.30 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=40;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.96;MQ0=35;MQRankSum=1.231;QD=0.31;ReadPosRankSum=1.231;SB=0.020 GT:AD:DP:GQ:PL 0/1:32,8:40:19:42,0,19 chrX 20081 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=8.90;MQ0=27;MQRankSum=0.358;QD=0.81;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,30:32:6:57,6,0 chrX 20084 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.01;MQ0=31;MQRankSum=0.727;QD=0.74;ReadPosRankSum=-0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,5:35:6:57,6,0 chrX 20198 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=7;QD=2.64;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrX 20276 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=3;QD=3.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:6:56,6,0 chrX 20312 . T A 50.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.87;MQ0=6;QD=4.63;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:9:83,9,0 chrX 20336 . C T 77.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.87;MQ0=6;QD=7.05;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:110,12,0 chrX 20810 . C T 415 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.87;MQ0=84;QD=3.35;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:1,123:124:48:448,48,0 chrX 20813 . C T 416 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=82;QD=3.28;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:1,126:127:48:449,48,0 chrX 20828 . C T 502 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=73;QD=4.08;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,123:123:57:535,57,0 chrX 20867 . G A 360 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=14.40;MQ0=66;QD=3.24;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,110:111:42:393,42,0 chrX 21146 . T A 85.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=9.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:12:118,12,0 chrX 21149 . C T 89.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=0;QD=6.89;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:122,12,0 chrX 21152 . C A 86.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=0;QD=6.65;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:119,12,0 chrX 21158 . C T 90.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=6.47;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:123,12,0 chrX 21165 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=5.61;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:111,12,0 chrX 21176 . C T 87.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=0;QD=4.86;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:120,12,0 chrX 21199 . A G 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=3.44;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:115,12,0 chrX 21206 . C T 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=3.44;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:115,12,0 chrX 21207 . G A 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=3.44;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:115,12,0 chrX 21213 . T C 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=22.3600;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=3.44;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:115,12,0 chrX 24349 . A T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=0.50;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,54:54:6:58,6,0 chrX 24350 . C G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=0.48;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,54:54:6:57,6,0 chrX 24351 . A T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=0.50;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,54:54:6:58,6,0 chrX 24374 . C T 141.13 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=1.93;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,73:73:18:174,18,0 chrX 24377 . C T 139.13 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=1.96;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,71:71:18:172,18,0 chrX 24383 . G A 110.13 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=1.60;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,69:69:18:143,18,0 chrX 24386 . G C 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=2.03;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,65:65:18:165,18,0 chrX 24389 . A C 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=2.05;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,65:65:18:166,18,0 chrX 24403 . T C 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.19;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,59:59:18:162,18,0 chrX 24410 . G A 136.13 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:18:169,18,0 chrX 24413 . G C 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.46;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:18:168,18,0 chrX 24416 . A G 148.13 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.69;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:18:181,18,0 chrX 24438 . T C 85.51 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=2.85;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:118,12,0 chrX 24440 . A C 83.51 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=2.78;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:116,12,0 chrX 24442 . T C 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=2.62;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:111,12,0 chrX 24461 . C A 203.01 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=6.15;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:236,27,0 chrX 24473 . A G 481 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=12.33;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:514,57,0 chrX 24488 . A T 1225 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=18.28;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1258,135,0 chrX 24532 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=24.02;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3555,369,0 chrX 24640 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=23.53;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1986,219,0 chrX 24647 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=26.21;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1868,195,0 chrX 24710 . G A 1392 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=25.31;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1425,147,0 chrX 24716 . C T 1441 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=24.84;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1474,147,0 chrX 24719 . C T 1466 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=24.03;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1499,153,0 chrX 24723 . A G 1347 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=20.41;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1380,150,0 chrX 24725 . A G 1395 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=21.14;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1428,150,0 chrX 24737 . C T 1572 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=20.42;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1605,162,0 chrX 24739 . C T 1471 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=19.10;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1504,162,0 chrX 24744 . G T 1502 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1535,156,0 chrX 24746 . A G 1414 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1447,156,0 chrX 24747 . C T 1484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1517,156,0 chrX 24758 . T C 1304 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1337,153,0 chrX 24764 . T C 1312 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1345,144,0 chrX 24773 . A G 1191 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.184;QD=13.69;ReadPosRankSum=2.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1224,132,0 chrX 24779 . A G 1051 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.479;QD=12.82;ReadPosRankSum=1.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1084,117,0 chrX 24782 . G A 977 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1010,105,0 chrX 24785 . C T 865 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:898,99,0 chrX 24789 . G T 919 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:952,99,0 chrX 24794 . T C 731 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:87:764,87,0 chrX 24803 . A G 746 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=10.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:84:779,84,0 chrX 24821 . A T 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;MQRankSum=-1.135;QD=11.79;ReadPosRankSum=2.371;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:84:764,84,0 chrX 24839 . A C 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=0;MQRankSum=-0.481;QD=13.44;ReadPosRankSum=2.359;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:90:759,90,0 chrX 24857 . T G 481 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.36;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:514,63,0 chrX 24873 . A G 417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=2.722;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=-0.039;QD=13.03;ReadPosRankSum=2.297;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:57:450,57,0 chrX 24887 . C T 308 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=15.40;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:341,45,0 chrX 24908 . G A 97.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=12.14;SB=-7.988e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:130,18,0 chrX 24983 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrX 24986 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrX 24996 . T G 75.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=9.41;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:108,15,0 chrX 25001 . C T 119.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=11.91;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrX 25025 . A T 162.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.50;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:195,27,0 chrX 25027 . G T 162.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.50;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:195,27,0 chrX 25055 . C T 162.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=12.46;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:195,27,0 chrX 25070 . C A 119.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:152,21,0 chrX 25079 . A G 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrX 25082 . T G 75.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.75;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:108,15,0 chrX 25145 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrX 25151 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrX 25154 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.26;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrX 25160 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.68;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:57,6,0 chrX 25165 . T C 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.97;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:59,6,0 chrX 25166 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.68;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:57,6,0 chrX 25169 . G A 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.97;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:59,6,0 chrX 25170 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.747;QD=2.72;ReadPosRankSum=0.747;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:53,6,0 chrX 25175 . A G 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=3.66;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:87,9,0 chrX 25190 . C T 140.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.00;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:18:173,18,0 chrX 25208 . A G 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=6.49;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:33:312,33,0 chrX 25211 . T A 292 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=6.79;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:36:325,36,0 chrX 25214 . T C 317 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=-1.555;QD=6.74;ReadPosRankSum=2.345;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:39:350,39,0 chrX 25223 . T C 533 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=8.74;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:63:566,63,0 chrX 25232 . G A 577 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=8.74;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:66:610,66,0 chrX 25238 . A G 583 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=7.88;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:66:616,66,0 chrX 25239 . A T 595 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=8.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:66:628,66,0 chrX 25243 . T G 549 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=1.425;QD=6.95;ReadPosRankSum=1.688;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,78:79:66:582,66,0 chrX 25250 . G C 617 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=6.86;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:72:650,72,0 chrX 25259 . C T 643 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=6.84;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:72:676,72,0 chrX 25262 . G A 637 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=7.16;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:72:670,72,0 chrX 25264 . T C 595 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=6.69;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:69:628,69,0 chrX 25298 . C T 655 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=5.70;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,115:115:72:688,72,0 chrX 25304 . A G 637 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:72:670,72,0 chrX 25306 . C T 696 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:75:729,75,0 chrX 25310 . C A 559 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.58;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:63:592,63,0 chrX 25313 . G A 546 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.48;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:60:579,60,0 chrX 25319 . G A 504 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.85;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,131:131:57:537,57,0 chrX 25322 . G T 525 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.95;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:57:558,57,0 chrX 25326 . T C 578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,128:128:66:611,66,0 chrX 25340 . A G 892 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=6.42;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,139:139:99:925,102,0 chrX 25346 . A G 976 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=6.51;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1009,117,0 chrX 25349 . G A 1093 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=7.14;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1126,120,0 chrX 25352 . A T 1152 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=7.53;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1185,126,0 chrX 25358 . C T 1463 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=8.98;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1496,159,0 chrX 25563 . A G 6231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=0.459;QD=23.51;ReadPosRankSum=1.719;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:6231,664,0 chrX 25622 . A G 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=225;Dels=0.00;FS=6.316;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.551;QD=22.97;ReadPosRankSum=2.384;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5168,576,0 chrX 25708 . G A 5696.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.63;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5696,589,0 chrX 25720 . C T 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=245;Dels=0.00;FS=3.421;HaplotypeScore=8.1230;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.065;QD=23.06;ReadPosRankSum=1.633;SB=-3.186e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5649,580,0 chrX 25877 . G T 6737.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.32;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6737,700,0 chrX 26108 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3782,414,0 chrX 26191 . G A 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.222;QD=22.83;ReadPosRankSum=1.652;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2978,303,0 chrX 26202 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.935;QD=19.81;ReadPosRankSum=1.701;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2291,255,0 chrX 26272 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.26;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2638,285,0 chrX 26368 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.43;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2574,267,0 chrX 26481 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.424;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.260;QD=22.26;ReadPosRankSum=1.669;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2482,267,0 chrX 26556 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.67;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1893,195,0 chrX 26567 . G T 1932 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.47;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1965,201,0 chrX 26602 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.08;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2285,237,0 chrX 26631 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.12;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2444,258,0 chrX 26666 . G T 2658 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.52;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2691,285,0 chrX 26695 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.838;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.072;QD=24.16;ReadPosRankSum=1.675;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:3005,324,0 chrX 26910 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.32;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4134,450,0 chrX 26946 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.55;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3275,357,0 chrX 26958 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.76;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3350,346,0 chrX 26988 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.05;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3120,333,0 chrX 27163 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.96;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3087,324,0 chrX 27203 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.27;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2546,258,0 chrX 27210 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.68;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2639,282,0 chrX 27301 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.37;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3558,370,0 chrX 27330 . G A 2641 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.56;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2674,291,0 chrX 27332 . T C 2801 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=21.06;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2834,297,0 chrX 27339 . T C 2666 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.46;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2699,288,0 chrX 27510 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=187;Dels=0.00;FS=5.648;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.382;QD=23.19;ReadPosRankSum=2.920;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4337,465,0 chrX 27654 . G T 5300.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.8076;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.56;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5300,547,0 chrX 27780 . T C 5286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=225;Dels=0.00;FS=8.008;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.051;QD=23.49;ReadPosRankSum=2.428;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:5286,582,0 chrX 27942 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.59;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4600,472,0 chrX 28011 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=200;Dels=0.00;FS=2.913;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.327;QD=23.38;ReadPosRankSum=2.400;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4676,496,0 chrX 28144 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=20.74;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3796,399,0 chrX 28147 . G C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=20.36;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3563,390,0 chrX 28178 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.82;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4450,451,0 chrX 28314 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=17.63;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2342,246,0 chrX 28338 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=106.3159;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=0.37;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:9:76,9,0 chrX 28380 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.21;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2646,267,0 chrX 28401 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.17;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2796,288,0 chrX 28422 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.104;QD=20.76;ReadPosRankSum=1.709;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3168,339,0 chrX 28769 . G T 2560 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.15;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2593,273,0 chrX 28795 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3130;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.74;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2631,270,0 chrX 28824 . A G 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.122;QD=23.33;ReadPosRankSum=1.627;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2343,252,0 chrX 28919 . T A 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=6.398;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.401;QD=22.36;ReadPosRankSum=2.331;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1889,207,0 chrX 29088 . A T 2561 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=27.54;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2594,267,0 chrX 29145 . C A 2005 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.03;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2038,222,0 chrX 29241 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=24.92;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2151,225,0 chrX 29255 . A T 2275 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=24.20;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2308,240,0 chrX 29300 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.68;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1962,207,0 chrX 29329 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.35;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1785,192,0 chrX 29423 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=2.923;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.108;QD=22.06;ReadPosRankSum=2.410;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2813,303,0 chrX 29443 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=86.1577;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.31;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2487,267,0 chrX 29515 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.68;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1936,198,0 chrX 29538 . C G 1897 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.06;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1930,201,0 chrX 29540 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.69;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1942,213,0 chrX 29610 . C G 2931 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=25.05;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2964,318,0 chrX 29671 . G T 2050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.53;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2083,216,0 chrX 29791 . A T 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=1.199;QD=20.97;ReadPosRankSum=1.699;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2214,222,0 chrX 29806 . A T 1907 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.82;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1940,207,0 chrX 29815 . G T 2076 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.37;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2109,222,0 chrX 29943 . T C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.315;QD=20.67;ReadPosRankSum=1.575;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1852,195,0 chrX 29944 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.07;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1866,195,0 chrX 29957 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.91;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1666,171,0 chrX 30160 . G T 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=106;Dels=0.00;FS=7.649;HaplotypeScore=9.4366;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.233;QD=18.24;ReadPosRankSum=1.768;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:5,100:106:99:1966,219,0 chrX 30164 . T G 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.737;DP=97;Dels=0.00;FS=2.587;HaplotypeScore=6.2272;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.632;QD=20.09;ReadPosRankSum=2.295;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:3,93:97:99:1982,225,0 chrX 30203 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=97;Dels=0.00;FS=2.712;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.350;QD=19.53;ReadPosRankSum=2.398;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,93:97:99:1927,204,0 chrX 30252 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=0.311;QD=22.15;ReadPosRankSum=1.673;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2624,282,0 chrX 30273 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=0.094;QD=21.27;ReadPosRankSum=1.678;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2777,303,0 chrX 30288 . G T 2512 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.62;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2545,261,0 chrX 30291 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.84;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2722,273,0 chrX 30332 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.24;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2765,300,0 chrX 30485 . G C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=25.44;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3511,372,0 chrX 30542 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.47;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3309,348,0 chrX 30579 . T G 3004 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.29;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3037,324,0 chrX 30629 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=20.30;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2489,267,0 chrX 30656 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=19.80;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2211,222,0 chrX 30667 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=16.13;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1872,204,0 chrX 30685 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=15.73;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1716,186,0 chrX 30689 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=16.05;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1702,177,0 chrX 30701 . C A 1686 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=16.06;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1719,180,0 chrX 30890 . A T 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=0.019;QD=18.89;ReadPosRankSum=1.694;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1752,180,0 chrX 30925 . A G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=0.139;QD=19.08;ReadPosRankSum=1.697;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1941,210,0 chrX 30982 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.82;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3130,316,0 chrX 31017 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.552;QD=25.67;ReadPosRankSum=1.706;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3466,369,0 chrX 31171 . A T 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.082;QD=23.79;ReadPosRankSum=1.677;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3030,321,0 chrX 31175 . T A 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.295;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.082;QD=24.16;ReadPosRankSum=1.677;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3077,315,0 chrX 31505 . T C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.592;QD=22.95;ReadPosRankSum=2.412;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3016,330,0 chrX 31610 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-0.699;QD=21.96;ReadPosRankSum=2.365;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3272,348,0 chrX 31614 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=21.70;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3267,339,0 chrX 31756 . A T 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.8713;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-0.283;QD=22.47;ReadPosRankSum=1.714;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4405,448,0 chrX 31774 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=197;Dels=0.00;FS=2.983;HaplotypeScore=6.7531;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-1.303;QD=19.35;ReadPosRankSum=2.400;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3811,411,0 chrX 31779 . A T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.6559;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=18.89;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3759,399,0 chrX 31798 . C G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=16.27;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3286,357,0 chrX 31824 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.19;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3125,324,0 chrX 31838 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=17.33;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3153,327,0 chrX 31900 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=164;Dels=0.00;FS=6.484;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.805;QD=21.74;ReadPosRankSum=2.420;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3566,384,0 chrX 31964 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.41;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4047,447,0 chrX 31975 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=2.955;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-0.690;QD=21.30;ReadPosRankSum=2.424;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4132,444,0 chrX 32004 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.7258;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=20.45;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4581,507,0 chrX 32051 . T C 5242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.7067;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.009;QD=22.79;ReadPosRankSum=1.687;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5242,570,0 chrX 32371 . G C 4899.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.89;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4899,523,0 chrX 32714 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3880,400,0 chrX 32847 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3452,366,0 chrX 32964 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.30;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3918,412,0 chrX 33178 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.890;QD=20.03;ReadPosRankSum=1.700;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2196,243,0 chrX 33235 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.58;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1612,171,0 chrX 33256 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.48;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1528,153,0 chrX 33289 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.94;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1499,153,0 chrX 33473 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.31;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1851,201,0 chrX 33525 . C G 1505 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.67;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1538,168,0 chrX 33710 . A T 2098 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.68;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2131,222,0 chrX 33800 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.64;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1333,144,0 chrX 33847 . T G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.012;QD=24.53;ReadPosRankSum=1.687;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1922,204,0 chrX 34012 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2281,252,0 chrX 34093 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.01;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3010,307,0 chrX 34147 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.679;QD=25.65;ReadPosRankSum=1.709;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3822,408,0 chrX 34438 . G A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.52;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4684,504,0 chrX 34465 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.218;QD=22.48;ReadPosRankSum=1.697;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4473,475,0 chrX 34681 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.30;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3867,414,0 chrX 34837 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=159;Dels=0.00;FS=9.131;HaplotypeScore=8.1012;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.437;QD=23.63;ReadPosRankSum=3.359;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:4,154:159:99:3757,402,0 chrX 34918 . G A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.04;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4657,484,0 chrX 34935 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5464;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.50;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4230,453,0 chrX 35035 . A T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.7085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.78;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4508,478,0 chrX 35563 . T C 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=3.527;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.049;QD=22.93;ReadPosRankSum=1.716;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4929,543,0 chrX 35623 . A C 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=197;Dels=0.00;FS=6.011;HaplotypeScore=9.7386;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-1.240;QD=20.46;ReadPosRankSum=2.954;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4030,432,0 chrX 35632 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.4361;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.20;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4020,423,0 chrX 35651 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.00;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4536,472,0 chrX 35680 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.412;QD=18.60;ReadPosRankSum=1.716;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3906,423,0 chrX 35704 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=191;Dels=0.00;FS=7.269;HaplotypeScore=7.3745;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.341;QD=19.19;ReadPosRankSum=2.424;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3665,405,0 chrX 35752 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.62;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3709,388,0 chrX 35812 . G A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.69;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4951,502,0 chrX 35830 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.795;QD=21.56;ReadPosRankSum=1.700;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4743,519,0 chrX 35923 . C G 5471.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.64;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5471,580,0 chrX 36034 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.9661;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.619;QD=20.29;ReadPosRankSum=1.696;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:3998,435,0 chrX 36139 . A C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.150;QD=18.63;ReadPosRankSum=1.712;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3256,351,0 chrX 36154 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=7.2704;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.96;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3181,330,0 chrX 36217 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.86;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2957,324,0 chrX 36219 . A C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.116;QD=18.44;ReadPosRankSum=1.068;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:2928,295,0 chrX 36253 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=147;Dels=0.00;FS=4.349;HaplotypeScore=13.2022;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.308;QD=18.62;ReadPosRankSum=1.638;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2770,276,0 chrX 36293 . C G 2180 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.30;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2213,234,0 chrX 36357 . A G 2401 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.61;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2434,270,0 chrX 36445 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.8680;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.22;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3377,366,0 chrX 36583 . A G 5819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=246;Dels=0.00;FS=3.806;HaplotypeScore=17.4814;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.516;QD=23.65;ReadPosRankSum=1.718;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5819,625,0 chrX 36794 . C T 6847.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=21.88;SB=-4.141e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:6847,697,0 chrX 36795 . C T 6820.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=22.07;SB=-4.220e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6820,709,0 chrX 36818 . C G 6001.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=4.5273;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.08;SB=-4.262e+03 GT:AD:DP:GQ:PL 1/1:0,330:332:99:6001,646,0 chrX 36820 . G A 6206.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=5.3160;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.09;SB=-3.872e+03 GT:AD:DP:GQ:PL 1/1:0,342:343:99:6206,672,0 chrX 37127 . T C 6380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=331;Dels=0.00;FS=4.892;HaplotypeScore=24.2850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.344;QD=19.27;ReadPosRankSum=1.721;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,326:331:99:6380,685,0 chrX 37500 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4055,444,0 chrX 37925 . G C 4452.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.03;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.46;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4452,474,0 chrX 37938 . T G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=181;Dels=0.00;FS=2.576;HaplotypeScore=14.0774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.672;QD=23.36;ReadPosRankSum=2.906;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4228,451,0 chrX 38095 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=189;Dels=0.00;FS=2.756;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.216;QD=21.46;ReadPosRankSum=2.371;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4055,438,0 chrX 38155 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.828;QD=21.59;ReadPosRankSum=2.415;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3120,342,0 chrX 38250 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0107;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.425;QD=24.72;ReadPosRankSum=1.671;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4177,441,0 chrX 38301 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.19;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3967,412,0 chrX 38387 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.58;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3441,355,0 chrX 38691 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.72;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2239,246,0 chrX 39241 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.296;QD=24.63;ReadPosRankSum=1.711;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4064,429,0 chrX 39500 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8622;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.28;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3387,360,0 chrX 39598 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.07;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2716,288,0 chrX 39657 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4318;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.59;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3107,316,0 chrX 39814 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.17;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3821,388,0 chrX 40100 . A T 1387 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.34;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1420,147,0 chrX 40107 . G T 1428 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.67;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1461,150,0 chrX 40239 . T C 2535 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.85;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2568,273,0 chrX 40731 . G T 2704 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.75;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2737,282,0 chrX 41107 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=4.281;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.052;QD=23.32;ReadPosRankSum=1.680;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3205,336,0 chrX 41250 . G T 2257 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=25.08;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2290,234,0 chrX 41577 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=4.159;HaplotypeScore=8.9217;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.197;QD=22.88;ReadPosRankSum=1.695;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4232,450,0 chrX 41671 . C G 2884 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.68;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2917,318,0 chrX 41794 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.93;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2096,222,0 chrX 41803 . A G 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=103;Dels=0.00;FS=10.698;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=1.010;QD=19.78;ReadPosRankSum=2.911;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:3,98:103:99:2070,225,0 chrX 42451 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3447,360,0 chrX 42525 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.561;QD=23.06;ReadPosRankSum=1.509;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2731,300,0 chrX 42958 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7387;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.57;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4267,474,0 chrX 43109 . T C 5604.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5604,604,0 chrX 43261 . G C 2778 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.6971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2811,315,0 chrX 43594 . A C 2111 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2144,231,0 chrX 43681 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2210,234,0 chrX 44212 . T C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.216;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.107;QD=22.45;ReadPosRankSum=1.652;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2974,318,0 chrX 44500 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2699,291,0 chrX 44863 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.3227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3784,391,0 chrX 44980 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=120;Dels=0.00;FS=3.016;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=23.03;ReadPosRankSum=2.409;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2797,306,0 chrX 45076 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3417,363,0 chrX 45217 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3125,336,0 chrX 45625 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.61;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2819,288,0 chrX 45742 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2034,222,0 chrX 45922 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.68;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2627,282,0 chrX 46267 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.60;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3986,423,0 chrX 46993 . A G 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=9.142;HaplotypeScore=7.3557;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.420;QD=23.06;ReadPosRankSum=2.334;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1993,219,0 chrX 47084 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3166,327,0 chrX 47473 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.33;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1931,207,0 chrX 47899 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.86;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3491,369,0 chrX 47941 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.98;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3229,333,0 chrX 48015 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.32;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3772,408,0 chrX 48179 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.10;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3069,315,0 chrX 48186 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.56;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3025,324,0 chrX 48515 . G C 2760 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2793,300,0 chrX 48559 . C G 2857 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2890,306,0 chrX 48799 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4160,436,0 chrX 49357 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.4598;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.40;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3192,328,0 chrX 49500 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=6.389;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.197;QD=21.12;ReadPosRankSum=2.422;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3843,414,0 chrX 49501 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.41;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3875,403,0 chrX 49551 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.4004;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.20;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3507,361,0 chrX 49768 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.7561;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.84;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4390,471,0 chrX 50434 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.48;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2202,240,0 chrX 50478 . A T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=27.03;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3433,343,0 chrX 50613 . A C 2997 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3030,321,0 chrX 51007 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.51;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3097,327,0 chrX 51321 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1792,189,0 chrX 51409 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1448,156,0 chrX 51487 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2440,249,0 chrX 52036 . C A 2234 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2267,240,0 chrX 52393 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1334,138,0 chrX 52757 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.87;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1258,132,0 chrX 52825 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.14;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1575,162,0 chrX 52905 . T A 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=67;Dels=0.04;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.487;QD=24.67;ReadPosRankSum=1.678;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1686,168,0 chrX 52932 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.26;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1902,204,0 chrX 53177 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.8080;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.72;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,105:109:99:2401,255,0 chrX 53312 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.70;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4150,438,0 chrX 53352 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=3.822;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.846;QD=25.09;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4416,466,0 chrX 53513 . A T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=24.52;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4831,499,0 chrX 53550 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.46;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4761,490,0 chrX 53568 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.29;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4260,448,0 chrX 53592 . T C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=18.88;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4097,444,0 chrX 53601 . A C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.672;QD=18.81;ReadPosRankSum=1.700;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4120,441,0 chrX 53842 . A G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.472;QD=23.82;ReadPosRankSum=1.654;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3225,342,0 chrX 53946 . A T 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=7.901;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.144;QD=23.79;ReadPosRankSum=2.405;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2674,273,0 chrX 54232 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4409;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.60;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3268,351,0 chrX 54266 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.57;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3366,351,0 chrX 54420 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3108,327,0 chrX 54825 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2521,261,0 chrX 54931 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=25.31;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2792,288,0 chrX 54948 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=23.40;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2607,264,0 chrX 54960 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.472;QD=19.35;ReadPosRankSum=1.627;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1949,213,0 chrX 54990 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.59;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2127,219,0 chrX 55276 . A T 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.345;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.609;QD=27.72;ReadPosRankSum=1.700;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:3027,304,0 chrX 55335 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.67;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2921,300,0 chrX 56022 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.52;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3653,376,0 chrX 56320 . G A 280 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.67;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:33:313,33,0 chrX 56611 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.481;QD=23.11;ReadPosRankSum=1.620;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2899,309,0 chrX 56789 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.28;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3593,387,0 chrX 56999 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.9890;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.55;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2641,279,0 chrX 57032 . T C 3077 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.42;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3110,330,0 chrX 57122 . A C 2616 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.62;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2649,285,0 chrX 57144 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.433;QD=21.16;ReadPosRankSum=1.703;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2572,273,0 chrX 57448 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4600,490,0 chrX 57612 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.0849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4770,508,0 chrX 57860 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.5550;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.41;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5005,561,0 chrX 58022 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.2283;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.54;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:3799,391,0 chrX 58040 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.013;QD=20.82;ReadPosRankSum=1.714;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3915,429,0 chrX 58196 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.52;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3344,369,0 chrX 58202 . C A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.10;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3523,366,0 chrX 58706 . T C 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5409;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.417;QD=24.82;ReadPosRankSum=2.348;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:3036,336,0 chrX 58993 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.481;QD=23.90;ReadPosRankSum=1.684;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1778,189,0 chrX 59187 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=89;Dels=0.00;FS=2.593;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.784;QD=21.44;ReadPosRankSum=2.808;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1941,210,0 chrX 59202 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.65;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2003,216,0 chrX 59251 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=24.52;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3000,315,0 chrX 59301 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-0.704;QD=24.30;ReadPosRankSum=1.687;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3766,405,0 chrX 59376 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=25.49;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3824,402,0 chrX 59485 . G T 2864 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3489;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.55;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2897,297,0 chrX 59496 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=22.65;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2910,303,0 chrX 59610 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=19.26;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2942,309,0 chrX 59645 . G T 981 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=12.11;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1014,117,0 chrX 59646 . T C 925 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.504;QD=11.71;ReadPosRankSum=-1.557;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:90:958,90,0 chrX 59648 . T A 1164 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.349;HaplotypeScore=55.4010;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=1.689;QD=14.55;ReadPosRankSum=1.689;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1197,123,0 chrX 59676 . A G 379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=114;Dels=0.00;FS=12.915;HaplotypeScore=95.1249;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;MQRankSum=0.439;QD=3.32;ReadPosRankSum=3.365;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:51:412,51,0 chrX 59681 . T C 467 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=3.96;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:60:500,60,0 chrX 59703 . T C 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=-0.838;QD=10.30;ReadPosRankSum=1.704;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1320,150,0 chrX 59946 . G A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.62;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5098,514,0 chrX 59967 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.45;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4737,487,0 chrX 59991 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.86;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4915,508,0 chrX 60178 . T A 5988.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=25.27;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5988,610,0 chrX 60211 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=232;Dels=0.00;FS=6.069;HaplotypeScore=180.4809;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.253;QD=20.23;ReadPosRankSum=2.952;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:3,227:232:99:4694,507,0 chrX 60299 . C T 6046.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.1014;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.43;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6046,628,0 chrX 60425 . T C 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=238;Dels=0.00;FS=3.003;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.172;QD=23.08;ReadPosRankSum=2.408;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:2,234:238:99:5493,595,0 chrX 60645 . A T 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8696;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.378;QD=16.62;ReadPosRankSum=1.672;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2925,327,0 chrX 60675 . T A 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.195;HaplotypeScore=83.8201;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=1.710;QD=14.24;ReadPosRankSum=1.687;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2297,240,0 chrX 60686 . T C 243.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.213;DP=157;Dels=0.00;FS=3.383;HaplotypeScore=96.4129;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-1.757;QD=1.55;ReadPosRankSum=-2.592;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:111,39:157:99:273,0,255 chrX 60842 . T A 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.100;QD=25.33;ReadPosRankSum=1.705;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3224,331,0 chrX 60979 . T A 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.240;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.613;QD=26.23;ReadPosRankSum=1.692;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4591,466,0 chrX 61050 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.47;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4454,477,0 chrX 61391 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=3.108;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.526;QD=21.36;ReadPosRankSum=1.604;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2959,318,0 chrX 61449 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=2.952;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.097;QD=21.58;ReadPosRankSum=2.346;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4100,438,0 chrX 61545 . T G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.58;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3264,354,0 chrX 61584 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5604;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.40;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3449,375,0 chrX 61680 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.89;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3045,307,0 chrX 61708 . T A 2705 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.49;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2738,282,0 chrX 61713 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.36;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2603,267,0 chrX 61814 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.32;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3433,355,0 chrX 61827 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=21.25;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3527,361,0 chrX 61893 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.44;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3882,411,0 chrX 61926 . T A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=24.77;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4136,430,0 chrX 61974 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.212;QD=22.46;ReadPosRankSum=1.710;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3593,378,0 chrX 61995 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.10;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3974,403,0 chrX 62016 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.088;DP=184;Dels=0.00;FS=13.670;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.347;QD=20.70;ReadPosRankSum=4.103;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:6,178:184:99:3809,402,0 chrX 62065 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.5961;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.07;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4175,444,0 chrX 62571 . A G 7117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=309;Dels=0.00;FS=7.512;HaplotypeScore=18.8253;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.203;QD=23.03;ReadPosRankSum=2.402;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:2,306:309:99:7117,783,0 chrX 62857 . A G 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=225;Dels=0.00;FS=12.026;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.379;QD=24.40;ReadPosRankSum=2.960;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:5491,586,0 chrX 63405 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=4.092;HaplotypeScore=18.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.275;QD=20.01;ReadPosRankSum=1.679;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3922,420,0 chrX 63597 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2906,300,0 chrX 63649 . T A 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=110;Dels=0.00;FS=2.979;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.951;QD=22.20;ReadPosRankSum=2.360;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2475,252,0 chrX 64093 . A C 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.9044;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.340;QD=23.43;ReadPosRankSum=1.669;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5201,553,0 chrX 64516 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=24.02;ReadPosRankSum=0.195;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4108,412,0 chrX 64611 . G T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.02;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3723,402,0 chrX 64876 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.5383;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.40;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,157:164:99:3837,403,0 chrX 65007 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3514,372,0 chrX 65469 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.04;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3932,409,0 chrX 65790 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=141;Dels=0.00;FS=5.944;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.122;QD=25.18;ReadPosRankSum=2.907;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3551,378,0 chrX 66129 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.0106;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.578;QD=25.73;ReadPosRankSum=1.666;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4039,432,0 chrX 66255 . T C 2787 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2820,309,0 chrX 66411 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.823;HaplotypeScore=7.8347;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.634;QD=24.56;ReadPosRankSum=1.704;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3079,327,0 chrX 67074 . T A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9161;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.94;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3766,391,0 chrX 67229 . A T 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.048;QD=23.54;ReadPosRankSum=1.556;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3695,382,0 chrX 67354 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.22;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3738,405,0 chrX 67631 . C A 1681 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.41;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1714,186,0 chrX 67654 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=20.97;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1438,150,0 chrX 67660 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=19.93;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1368,150,0 chrX 67686 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.95;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1310,135,0 chrX 67836 . A T 2984 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.31;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3017,315,0 chrX 67907 . A C 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=6.555;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.623;QD=23.74;ReadPosRankSum=1.714;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,189:195:99:4629,493,0 chrX 68090 . T C 7951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=313;Dels=0.00;FS=5.978;HaplotypeScore=21.0737;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.939;QD=25.40;ReadPosRankSum=2.919;SB=-4.104e+03 GT:AD:DP:GQ:PL 1/1:3,308:313:99:7951,841,0 chrX 68514 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.4927;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.56;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3930,414,0 chrX 68934 . C G 4011.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0866;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.16;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4011,418,0 chrX 69580 . A G 5427.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.01;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5427,577,0 chrX 69760 . G A 5017.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5017,543,0 chrX 69814 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=169;Dels=0.00;FS=7.767;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.031;QD=22.42;ReadPosRankSum=2.391;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3789,420,0 chrX 69957 . A G 4684.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.18;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4684,493,0 chrX 70072 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.215;QD=22.54;ReadPosRankSum=1.694;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4103,433,0 chrX 70342 . T A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4120,444,0 chrX 71179 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.26;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2499,264,0 chrX 71182 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.43;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2523,279,0 chrX 71299 . T A 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=109;Dels=0.00;FS=2.988;HaplotypeScore=17.7436;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.140;QD=17.06;ReadPosRankSum=2.382;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1893,195,0 chrX 71578 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.17;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3230,331,0 chrX 71692 . A T 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8292;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.195;QD=24.45;ReadPosRankSum=1.705;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3236,333,0 chrX 71752 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.12;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2715,279,0 chrX 73368 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.19;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4257,436,0 chrX 73391 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.10;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3904,420,0 chrX 73580 . G T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.06;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3358,348,0 chrX 73708 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3265,334,0 chrX 74010 . T A 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=26.09;ReadPosRankSum=1.672;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3060,315,0 chrX 74077 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.01;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3502,375,0 chrX 74362 . A C 7247.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=17.2934;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.76;SB=-3.770e+03 GT:AD:DP:GQ:PL 1/1:0,302:305:99:7247,778,0 chrX 74530 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2329;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.67;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3696,382,0 chrX 74755 . C A 1665 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1698,180,0 chrX 74905 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.636;QD=26.85;ReadPosRankSum=1.323;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3867,391,0 chrX 75066 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.5325;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.49;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4543,489,0 chrX 75337 . A T 2809 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;MQRankSum=-1.571;QD=21.78;ReadPosRankSum=1.705;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2842,291,0 chrX 75340 . C T 2836 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=21.32;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2869,294,0 chrX 75343 . G C 2736 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=20.57;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2769,300,0 chrX 75366 . C G 2191 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=18.11;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2224,246,0 chrX 75369 . A T 2246 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=18.26;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2279,234,0 chrX 75537 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=20.71;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1980,204,0 chrX 75553 . A C 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;MQRankSum=1.121;QD=15.67;ReadPosRankSum=1.664;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1647,186,0 chrX 75559 . T G 1600 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=15.84;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1633,177,0 chrX 75669 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.54;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3609,373,0 chrX 75699 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.58;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,300,0 chrX 75961 . A T 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.388;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.443;QD=25.43;ReadPosRankSum=1.674;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3085,310,0 chrX 76073 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.562;QD=24.11;ReadPosRankSum=1.675;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2974,318,0 chrX 76157 . G C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.28;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3286,348,0 chrX 76676 . T C 726 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:84:759,84,0 chrX 76677 . T C 715 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:81:748,81,0 chrX 76744 . C G 836 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=17.42;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:93:869,93,0 chrX 76747 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=15.79;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:791,90,0 chrX 76768 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.00;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1135,114,0 chrX 76842 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=26.83;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2582,261,0 chrX 77140 . T G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=149;Dels=0.00;FS=2.975;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.141;QD=23.81;ReadPosRankSum=2.383;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3547,378,0 chrX 77203 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.44;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3940,417,0 chrX 77343 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.324;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.081;QD=22.98;ReadPosRankSum=1.712;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3998,426,0 chrX 77355 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=3.035;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.822;QD=22.43;ReadPosRankSum=1.692;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3993,426,0 chrX 77571 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4181;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.87;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3659,393,0 chrX 77583 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6205;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.07;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3256,354,0 chrX 77730 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.50;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3647,379,0 chrX 78222 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.87;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4574,481,0 chrX 78273 . A G 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.870;QD=22.92;ReadPosRankSum=1.715;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4814,514,0 chrX 78486 . G C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3953,435,0 chrX 78942 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.3352;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.987;QD=20.03;ReadPosRankSum=1.710;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3197,345,0 chrX 78981 . C T 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.497;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=110.5565;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=5.760;QD=9.71;ReadPosRankSum=-9.105;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:51,96:147:99:1460,127,0 chrX 79092 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.38;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4583,489,0 chrX 79609 . C A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=25.18;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3878,405,0 chrX 79642 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=145;Dels=0.00;FS=13.181;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.308;QD=20.97;ReadPosRankSum=2.867;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3074,336,0 chrX 79647 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.63;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2996,324,0 chrX 79806 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.76;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3126,321,0 chrX 79812 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=19.43;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2850,297,0 chrX 79831 . T C 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=7.289;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-0.030;QD=18.13;ReadPosRankSum=2.329;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2245,246,0 chrX 79835 . A C 2245 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=18.10;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2278,243,0 chrX 80055 . T A 2697 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5001;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.58;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2730,285,0 chrX 80077 . T G 2561 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=22.08;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2594,276,0 chrX 80094 . A T 2314 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.61;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2347,237,0 chrX 80102 . T G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.299;QD=20.44;ReadPosRankSum=1.703;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2486,264,0 chrX 80208 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.21;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3886,420,0 chrX 80223 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.674;QD=21.95;ReadPosRankSum=1.698;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4478,483,0 chrX 80358 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.99;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3518,364,0 chrX 80359 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.43;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3561,364,0 chrX 80433 . C T 4370.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.71;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4370,454,0 chrX 80439 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=4.146;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-0.057;QD=18.78;ReadPosRankSum=1.716;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4019,447,0 chrX 80595 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.546;HaplotypeScore=6.9244;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.431;QD=19.47;ReadPosRankSum=1.694;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3543,384,0 chrX 80604 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.52;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3830,391,0 chrX 80742 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1335;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.67;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4103,418,0 chrX 80826 . G A 4571.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.0543;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.19;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4571,478,0 chrX 81028 . A G 6412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=261;Dels=0.00;FS=4.123;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.387;QD=24.57;ReadPosRankSum=1.719;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:6412,694,0 chrX 81387 . C A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3421,349,0 chrX 81603 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.92;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3190,336,0 chrX 81741 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.45;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2457,267,0 chrX 81756 . G T 2119 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.80;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2152,231,0 chrX 81757 . G A 2131 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.92;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2164,231,0 chrX 81758 . G A 2218 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.73;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2251,231,0 chrX 81876 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.14;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1868,198,0 chrX 81986 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.317;QD=25.51;ReadPosRankSum=1.695;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2405,261,0 chrX 82182 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3357,363,0 chrX 82254 . C A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3472,358,0 chrX 82641 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.13;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2809,294,0 chrX 82787 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=194;Dels=0.00;FS=10.314;HaplotypeScore=11.4995;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.724;QD=22.80;ReadPosRankSum=2.964;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4423,471,0 chrX 82809 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.08;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4118,444,0 chrX 82983 . G A 4964.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.45;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4964,511,0 chrX 83220 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1347;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.20;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3848,411,0 chrX 83271 . G C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.40;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3807,394,0 chrX 83298 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.49;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4283,442,0 chrX 83388 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.35;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3900,400,0 chrX 83621 . G A 5961.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.49;SB=-3.543e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5961,625,0 chrX 83777 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=25.17;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5008,505,0 chrX 83798 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.92;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4713,490,0 chrX 84187 . A C 3133 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.48;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3166,345,0 chrX 84310 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3362,346,0 chrX 84655 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=3.030;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.831;QD=23.68;ReadPosRankSum=2.401;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3575,384,0 chrX 84895 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=7.744;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.369;QD=22.84;ReadPosRankSum=2.406;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3906,426,0 chrX 84907 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=173;Dels=0.00;FS=12.603;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.491;QD=22.45;ReadPosRankSum=2.901;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3883,426,0 chrX 85185 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.784;QD=23.22;ReadPosRankSum=1.716;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4923,529,0 chrX 85264 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.71;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3224,348,0 chrX 85454 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.92;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1640,171,0 chrX 85483 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.80;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2016,207,0 chrX 85607 . G C 2124 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.49;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2157,240,0 chrX 85615 . T C 2491 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.11;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2524,270,0 chrX 85656 . T A 2877 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.13;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2910,303,0 chrX 85785 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.46;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3106,345,0 chrX 85818 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.381;QD=23.40;ReadPosRankSum=1.634;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3300,354,0 chrX 85894 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.91;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2479,264,0 chrX 86001 . T G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.139;QD=25.16;ReadPosRankSum=1.712;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4378,468,0 chrX 86057 . A T 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4299;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.426;QD=20.03;ReadPosRankSum=0.369;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2477,252,0 chrX 86090 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=110;Dels=0.00;FS=12.822;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.019;QD=20.40;ReadPosRankSum=2.935;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:3,105:110:99:2277,243,0 chrX 86238 . T C 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=91;Dels=0.00;FS=7.836;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.218;QD=21.25;ReadPosRankSum=2.394;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,86:91:99:1967,210,0 chrX 86328 . A T 2871 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.41;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2904,300,0 chrX 86351 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.97;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2742,285,0 chrX 86414 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.74;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2381,258,0 chrX 86417 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.89;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2661,270,0 chrX 86567 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.2328;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.35;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3653,381,0 chrX 86690 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.86;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3517,358,0 chrX 86865 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.60;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3444,358,0 chrX 87115 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.51;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3233,345,0 chrX 87124 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.36;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3584,384,0 chrX 87216 . C A 5674.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.46;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5674,595,0 chrX 87516 . T G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=4.048;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.286;QD=23.53;ReadPosRankSum=1.705;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3069,330,0 chrX 87878 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.02;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2935,315,0 chrX 87904 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.02;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2735,300,0 chrX 88033 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4112,438,0 chrX 88456 . C G 2352 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.00;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2385,258,0 chrX 88473 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.28;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2264,231,0 chrX 88506 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.2339;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.15;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2229,228,0 chrX 88580 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.15;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2957,306,0 chrX 88585 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.98;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2912,303,0 chrX 88714 . T C 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-2.064;QD=23.26;ReadPosRankSum=2.377;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2406,267,0 chrX 88837 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2809;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.49;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3723,408,0 chrX 89050 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1495,153,0 chrX 89089 . C T 1043 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;QD=23.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1076,117,0 chrX 89270 . C G 1267 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1300,150,0 chrX 89312 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.79;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:2069,213,0 chrX 89346 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1871,201,0 chrX 89438 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.29;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3144,321,0 chrX 89544 . C T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6912;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.08;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4614,475,0 chrX 89645 . A G 4794.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.97;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4794,516,0 chrX 89763 . G C 4563.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.3879;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.04;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4563,495,0 chrX 89840 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.6760;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.12;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4438,463,0 chrX 89888 . T A 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=190;Dels=0.00;FS=6.324;HaplotypeScore=11.7385;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.704;QD=25.05;ReadPosRankSum=2.398;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4760,484,0 chrX 89907 . T G 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2824;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.308;QD=24.06;ReadPosRankSum=1.714;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4571,481,0 chrX 90035 . G C 4440.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5847;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.26;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4440,483,0 chrX 90197 . G C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=6.3781;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=22.13;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3652,387,0 chrX 90203 . G C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=8.3084;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.15;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3554,384,0 chrX 90241 . C A 2982 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=12.3683;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.66;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3015,318,0 chrX 90254 . G A 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=9.7448;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.592;QD=17.27;ReadPosRankSum=0.030;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3038,318,0 chrX 90357 . G C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=22.2647;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.29;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4029,441,0 chrX 90410 . G C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=23.08;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3923,420,0 chrX 90432 . T A 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=0.114;QD=22.83;ReadPosRankSum=1.691;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3835,405,0 chrX 90629 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=22.24;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3191,333,0 chrX 90630 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=22.83;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3207,325,0 chrX 90657 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=2.880;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.174;QD=18.30;ReadPosRankSum=2.413;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2503,270,0 chrX 90680 . T G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.615;DP=124;Dels=0.00;FS=6.107;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.418;QD=15.73;ReadPosRankSum=1.943;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:1984,190,0 chrX 90694 . T A 1822 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=14.23;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1855,198,0 chrX 90707 . A C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=1.675;QD=15.52;ReadPosRankSum=1.704;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1926,207,0 chrX 90754 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.37;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2683,288,0 chrX 91114 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.460;QD=23.46;ReadPosRankSum=1.709;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3472,372,0 chrX 91153 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.82;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3355,351,0 chrX 91264 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.05;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2462,261,0 chrX 91365 . A C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=2.983;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.716;QD=23.25;ReadPosRankSum=2.320;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2683,285,0 chrX 91730 . G A 245 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.42;SB=-8.700e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:278,30,0 chrX 91731 . C A 253 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.08;SB=-8.600e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:286,30,0 chrX 91867 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.14;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1417,150,0 chrX 91894 . G T 1965 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.29;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1998,207,0 chrX 92401 . T C 2733 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.19;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2766,297,0 chrX 92430 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.481;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.534;QD=23.64;ReadPosRankSum=1.700;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2562,273,0 chrX 92479 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.74;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2787,285,0 chrX 92491 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.62;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2679,285,0 chrX 92512 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.11;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2797,303,0 chrX 92630 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.84;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3766,408,0 chrX 92713 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.7368;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.42;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3914,409,0 chrX 92786 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=3.478;HaplotypeScore=12.8971;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.224;QD=21.45;ReadPosRankSum=1.709;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3186,339,0 chrX 92932 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3283,348,0 chrX 93007 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3177,330,0 chrX 93121 . G T 2846 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.5423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2879,300,0 chrX 93355 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.29;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3068,310,0 chrX 93538 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.40;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2318,249,0 chrX 93585 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.72;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2879,289,0 chrX 93589 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.93;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2691,288,0 chrX 93721 . C A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.84;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4049,424,0 chrX 93751 . C T 4928.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9291;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.76;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4928,505,0 chrX 93782 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=4.714;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.638;QD=23.46;ReadPosRankSum=1.671;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5350,574,0 chrX 93827 . G A 5788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.095;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.2679;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.318;QD=24.74;ReadPosRankSum=0.444;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5788,564,0 chrX 93919 . G T 5501.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.36;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5501,568,0 chrX 94100 . G A 5797.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.56;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5797,598,0 chrX 94118 . T C 5737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=268;Dels=0.00;FS=2.938;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.724;QD=21.41;ReadPosRankSum=2.403;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:2,264:268:99:5737,613,0 chrX 94327 . A G 7644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=357;Dels=0.00;FS=12.106;HaplotypeScore=14.8385;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.395;QD=21.41;ReadPosRankSum=2.980;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:3,350:357:99:7644,849,0 chrX 94353 . C T 8048.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=20.3310;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.75;SB=-3.727e+03 GT:AD:DP:GQ:PL 1/1:0,367:370:99:8048,850,0 chrX 94501 . C T 8471.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=21.3897;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.83;SB=-4.981e+03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:8471,877,0 chrX 94749 . A T 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.568;DP=159;Dels=0.00;FS=8.032;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.278;QD=22.19;ReadPosRankSum=3.637;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:5,154:159:99:3528,375,0 chrX 94776 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.57;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3815,400,0 chrX 94846 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.5772;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.63;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3610,393,0 chrX 95089 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=4.029;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.673;QD=24.68;ReadPosRankSum=1.654;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4393,466,0 chrX 95205 . T C 5865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.4566;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.468;QD=24.85;ReadPosRankSum=1.673;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:5865,636,0 chrX 95565 . T C 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=255;Dels=0.00;FS=5.550;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.759;QD=21.16;ReadPosRankSum=2.949;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:5397,583,0 chrX 95814 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.315;QD=22.73;ReadPosRankSum=2.946;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:3,239:243:99:5524,583,0 chrX 96002 . G T 1667 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1700,174,0 chrX 96194 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.96;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3200,333,0 chrX 96324 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=139;Dels=0.00;FS=2.929;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.389;QD=21.32;ReadPosRankSum=2.341;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,134:139:99:2997,321,0 chrX 96365 . C A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.11;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3882,397,0 chrX 96379 . C T 3880.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.20;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3880,403,0 chrX 96425 . C T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.38;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3848,391,0 chrX 96464 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.34;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3641,376,0 chrX 96721 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.97;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2290,252,0 chrX 96724 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.80;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2289,252,0 chrX 96768 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.80;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1866,201,0 chrX 96890 . G T 2103 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.37;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2136,222,0 chrX 96902 . A G 1996 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.57;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2029,231,0 chrX 96909 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.47;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2264,237,0 chrX 97036 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2668,276,0 chrX 97063 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.87;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3557,361,0 chrX 97118 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.69;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4406,477,0 chrX 97211 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.15;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2741,294,0 chrX 97232 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.72;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,110:115:99:2646,276,0 chrX 97325 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.66;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3785,391,0 chrX 97369 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.067;QD=23.17;ReadPosRankSum=1.709;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3499,375,0 chrX 97454 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.41;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3540,378,0 chrX 97478 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.24;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3470,375,0 chrX 97556 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3566,370,0 chrX 98106 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3364,343,0 chrX 98630 . T C 7225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=312;Dels=0.00;FS=3.125;HaplotypeScore=20.0973;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.495;QD=23.16;ReadPosRankSum=1.698;SB=-4.034e+03 GT:AD:DP:GQ:PL 1/1:1,307:312:99:7225,784,0 chrX 98678 . A G 7058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=333;Dels=0.00;FS=2.812;HaplotypeScore=27.6794;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.085;QD=21.20;ReadPosRankSum=2.398;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:2,330:333:99:7058,780,0 chrX 98789 . T C 6958.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=13.3369;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.19;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:6958,745,0 chrX 98930 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4362,465,0 chrX 99116 . G C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.09;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3888,409,0 chrX 99725 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.58;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3479,375,0 chrX 99851 . G T 4531.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.63;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4531,463,0 chrX 99905 . A T 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=2.984;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.349;QD=21.93;ReadPosRankSum=2.350;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4890,505,0 chrX 99929 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.655;QD=19.25;ReadPosRankSum=1.685;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4273,465,0 chrX 99941 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.620;QD=19.00;ReadPosRankSum=1.668;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4124,441,0 chrX 99962 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.46;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3913,409,0 chrX 100283 . C T 5348.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=21.7812;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.05;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5348,553,0 chrX 101069 . C T 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.100;QD=20.33;ReadPosRankSum=-0.329;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2533,264,0 chrX 101180 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.710;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.903;QD=22.21;ReadPosRankSum=1.708;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3231,360,0 chrX 101201 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.96;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3474,358,0 chrX 101236 . C T 4140.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.50;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4140,430,0 chrX 101464 . T G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.51;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3721,396,0 chrX 101653 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4525,475,0 chrX 101806 . T G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=191;Dels=0.00;FS=6.666;HaplotypeScore=10.5088;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.578;QD=22.40;ReadPosRankSum=2.398;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4279,459,0 chrX 102363 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2782,285,0 chrX 102662 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.138;QD=22.24;ReadPosRankSum=0.847;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3080,333,0 chrX 103352 . A G 2767 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2800,300,0 chrX 103478 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3710,393,0 chrX 103601 . A G 2908 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.72;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2941,324,0 chrX 104552 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.39;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2863,291,0 chrX 104563 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.53;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2723,279,0 chrX 104790 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.71;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2855,309,0 chrX 105170 . C T 5872.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.5833;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.87;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5872,598,0 chrX 105262 . C T 6730.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3125;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.53;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:6730,718,0 chrX 105490 . G A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9827;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.48;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5071,520,0 chrX 105565 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7612;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.04;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3606,370,0 chrX 105643 . C T 4971.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.34;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4971,532,0 chrX 105664 . G A 5067.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.7716;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.79;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5067,529,0 chrX 105718 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.24;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4043,409,0 chrX 105829 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.95;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4406,463,0 chrX 106172 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=23.04;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1692,174,0 chrX 106245 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;MQRankSum=-1.030;QD=23.42;ReadPosRankSum=1.639;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1766,192,0 chrX 106326 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2289,243,0 chrX 106721 . T A 1824 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.80;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1857,189,0 chrX 106893 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.696;QD=20.81;ReadPosRankSum=1.673;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2489,267,0 chrX 106919 . T G 2518 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.71;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2551,276,0 chrX 107039 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.55;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2836,288,0 chrX 107092 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=2.983;HaplotypeScore=9.8313;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.140;QD=23.67;ReadPosRankSum=2.400;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3527,393,0 chrX 107239 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.17;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2958,303,0 chrX 107257 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=5.937;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.186;QD=21.30;ReadPosRankSum=2.896;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2695,291,0 chrX 107323 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.527;QD=23.96;ReadPosRankSum=1.709;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3642,387,0 chrX 107397 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.86;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4202,444,0 chrX 107470 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=143;Dels=0.00;FS=8.761;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.802;QD=22.55;ReadPosRankSum=3.397;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:4,139:143:99:3258,345,0 chrX 107485 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.74;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3561,367,0 chrX 107518 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.4196;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.82;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3688,393,0 chrX 107557 . A G 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.123;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.181;QD=23.30;ReadPosRankSum=1.714;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4543,481,0 chrX 107689 . G T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.35;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3782,396,0 chrX 107980 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.065;QD=22.39;ReadPosRankSum=1.650;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4770,511,0 chrX 108091 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.063;DP=185;Dels=0.00;FS=10.720;HaplotypeScore=15.4888;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=2.551;QD=19.19;ReadPosRankSum=4.149;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:6,177:185:99:3551,384,0 chrX 108143 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=159;Dels=0.00;FS=5.256;HaplotypeScore=17.6999;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.456;QD=21.14;ReadPosRankSum=3.404;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:4,155:159:99:3362,354,0 chrX 108247 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7584;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.15;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2894,297,0 chrX 108259 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.78;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2951,306,0 chrX 108466 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.25;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2859,297,0 chrX 108616 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7983;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.65;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4165,430,0 chrX 108712 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.3823;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.89;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3686,393,0 chrX 108722 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.15;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3635,370,0 chrX 108784 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.92;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3486,372,0 chrX 108904 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.55;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:5007,538,0 chrX 108954 . G T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.3978;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.64;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3622,370,0 chrX 109213 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.31;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4733,502,0 chrX 109481 . T A 1290 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1323,135,0 chrX 109567 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=4.981;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.020;QD=24.85;ReadPosRankSum=1.651;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,84:88:99:2220,234,0 chrX 109687 . T A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=26.41;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3512,364,0 chrX 110560 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2808,285,0 chrX 110608 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2972,303,0 chrX 110637 . A G 2428 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.48;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2461,258,0 chrX 110860 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.02;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2916,300,0 chrX 110925 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4568;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.86;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3460,369,0 chrX 111001 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.52;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3154,339,0 chrX 111089 . T G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9469;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.68;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3360,363,0 chrX 111416 . A C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=151;Dels=0.00;FS=3.260;HaplotypeScore=132.9170;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.565;QD=20.71;ReadPosRankSum=4.395;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:8,142:151:99:3160,345,0 chrX 111661 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.6154;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.245;QD=23.17;ReadPosRankSum=1.704;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:1,246:250:99:5792,633,0 chrX 111903 . C T 6034.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.04;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6034,616,0 chrX 112233 . C A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.41;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5034,538,0 chrX 112239 . A G 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=200;Dels=0.00;FS=2.774;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.413;QD=22.83;ReadPosRankSum=2.400;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4566,495,0 chrX 112403 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.12;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3738,396,0 chrX 112473 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=167;Dels=0.00;FS=5.476;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.238;QD=22.41;ReadPosRankSum=2.958;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3743,396,0 chrX 112575 . A G 5902.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.35;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5902,625,0 chrX 112731 . G A 6390.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.8678;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.58;SB=-3.814e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6390,661,0 chrX 112791 . T C 6371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=280;Dels=0.00;FS=6.682;HaplotypeScore=17.4524;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.776;QD=22.75;ReadPosRankSum=2.397;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:2,278:280:99:6371,696,0 chrX 112938 . T A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.74;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4792,487,0 chrX 112965 . T C 4908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=3.329;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.046;QD=21.34;ReadPosRankSum=1.671;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,225:230:99:4908,531,0 chrX 112991 . T C 5306.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.8066;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.48;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5306,568,0 chrX 113461 . T C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=4.025;HaplotypeScore=18.7799;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.938;QD=15.28;ReadPosRankSum=1.696;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1515,162,0 chrX 113505 . G A 968 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=14.45;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1001,105,0 chrX 113667 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.44;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1255,132,0 chrX 113753 . A G 662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.529;QD=19.47;ReadPosRankSum=1.631;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:75:695,75,0 chrX 113977 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.160;DP=101;Dels=0.00;FS=5.268;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.131;QD=23.53;ReadPosRankSum=3.369;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2410,261,0 chrX 114133 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.722;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.533;QD=22.73;ReadPosRankSum=1.682;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3193,357,0 chrX 114174 . C G 3000 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.06;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3033,321,0 chrX 114214 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=141;Dels=0.00;FS=12.876;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=20.78;ReadPosRankSum=2.920;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:3,135:141:99:2963,321,0 chrX 114298 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=2.775;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.063;QD=21.69;ReadPosRankSum=2.413;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3005,324,0 chrX 114582 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.17;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3247,348,0 chrX 114631 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.3032;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.78;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3569,367,0 chrX 114825 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=20.11;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3150,339,0 chrX 114831 . T G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;MQRankSum=1.338;QD=19.42;ReadPosRankSum=2.420;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3282,357,0 chrX 115225 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4483,457,0 chrX 115633 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.647;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.079;QD=23.70;ReadPosRankSum=1.712;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4219,453,0 chrX 115680 . G C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.49;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3943,420,0 chrX 115900 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=3.256;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.085;QD=23.29;ReadPosRankSum=1.656;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2176,234,0 chrX 116017 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.71;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2247,240,0 chrX 116020 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.16;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2426,252,0 chrX 116041 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.78;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2625,264,0 chrX 116066 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.1592;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.69;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2787,288,0 chrX 116153 . T G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=136;Dels=0.00;FS=5.267;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=2.074;QD=23.01;ReadPosRankSum=2.860;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3162,351,0 chrX 116264 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=26.05;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4402,457,0 chrX 116295 . C A 4977.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=25.79;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4977,514,0 chrX 116404 . T G 158.06 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=168.6100;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=0.85;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:21:191,21,0 chrX 116413 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.22;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3964,426,0 chrX 116526 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.682;QD=17.19;ReadPosRankSum=1.711;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:2887,309,0 chrX 116540 . C G 3021 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.16;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3054,324,0 chrX 116568 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=163;Dels=0.00;FS=11.504;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.031;QD=16.98;ReadPosRankSum=2.957;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:2801,300,0 chrX 116829 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.23;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3134,321,0 chrX 116870 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.91;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3013,312,0 chrX 116906 . T G 2503 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.75;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2536,270,0 chrX 116916 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.86;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2571,261,0 chrX 116986 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.46;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2161,219,0 chrX 117039 . C A 2031 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.57;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2064,216,0 chrX 117075 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.14;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2069,219,0 chrX 117184 . G C 1665 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1698,183,0 chrX 117559 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2980,303,0 chrX 117715 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2399,249,0 chrX 117792 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.65;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2493,255,0 chrX 117878 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2671,270,0 chrX 118010 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1803;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.80;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4180,436,0 chrX 118040 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7499;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.53;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4366,445,0 chrX 118136 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.29;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4556,478,0 chrX 118169 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=217;Dels=0.00;FS=11.407;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.847;QD=20.57;ReadPosRankSum=2.958;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4464,478,0 chrX 118200 . C T 5541.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.16;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5541,562,0 chrX 118265 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.7465;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.89;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4913,549,0 chrX 118277 . T A 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=245;Dels=0.00;FS=10.499;HaplotypeScore=13.9048;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.045;QD=20.67;ReadPosRankSum=2.914;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5065,537,0 chrX 118419 . A G 5885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=242;Dels=0.00;FS=3.526;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.898;QD=24.32;ReadPosRankSum=1.718;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5885,637,0 chrX 118625 . T C 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=6.499;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.679;QD=24.01;ReadPosRankSum=2.404;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:5235,553,0 chrX 118772 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.005;QD=20.75;ReadPosRankSum=1.711;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3383,369,0 chrX 118904 . G T 2595 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.17;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2628,282,0 chrX 118988 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=22.73;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1942,207,0 chrX 118997 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.49;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1787,189,0 chrX 119092 . A C 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=14.98;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1546,165,0 chrX 119095 . A C 1283 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.730;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=-1.699;QD=12.34;ReadPosRankSum=1.699;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1316,138,0 chrX 119099 . A G 1299 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.853;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;MQRankSum=-1.732;QD=12.14;ReadPosRankSum=1.700;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1332,144,0 chrX 119105 . A G 1434 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.661;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=1.406;QD=12.26;ReadPosRankSum=1.703;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1467,162,0 chrX 119112 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=13.09;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1630,174,0 chrX 119135 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=14.44;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1968,213,0 chrX 119236 . T A 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.247;QD=23.69;ReadPosRankSum=1.677;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3018,321,0 chrX 119585 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.17;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2813,297,0 chrX 119720 . A C 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=121;Dels=0.00;FS=6.834;HaplotypeScore=15.1610;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.386;QD=19.93;ReadPosRankSum=2.095;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,116:121:99:2444,264,0 chrX 119845 . G A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.78;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4566,495,0 chrX 119906 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.84;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3354,348,0 chrX 119958 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.32;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3454,355,0 chrX 120106 . A T 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.972;QD=22.11;ReadPosRankSum=1.704;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2752,294,0 chrX 120196 . G T 2017 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.45;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2050,216,0 chrX 120291 . T A 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.931;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.187;QD=23.49;ReadPosRankSum=1.693;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2147,228,0 chrX 120358 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=3.051;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.330;QD=23.37;ReadPosRankSum=2.366;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,86:89:99:2113,225,0 chrX 120394 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2255,243,0 chrX 120628 . A T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.1528;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.19;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5391,559,0 chrX 120734 . A T 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=231;Dels=0.00;FS=20.141;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;MQRankSum=3.513;QD=19.86;ReadPosRankSum=3.575;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:6,225:231:99:4587,484,0 chrX 120736 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=234;Dels=0.00;FS=12.944;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;MQRankSum=3.583;QD=19.89;ReadPosRankSum=3.980;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:7,227:234:99:4654,484,0 chrX 120754 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.5311;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=2;QD=17.26;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,254:258:99:4454,460,0 chrX 120829 . T C 5888.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=390;Dels=0.00;FS=10.065;HaplotypeScore=17.5747;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=2;MQRankSum=4.150;QD=15.10;ReadPosRankSum=3.024;SB=-3.647e+03 GT:AD:DP:GQ:PL 1/1:12,376:390:99:5888,550,0 chrX 120868 . C T 4210.01 SnpCluster AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=14.77;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:4210,459,0 chrX 120874 . C T 3715.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=265;Dels=0.00;FS=4.088;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;MQRankSum=-1.666;QD=14.02;ReadPosRankSum=0.827;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:3715,405,0 chrX 120877 . T C 3463.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=254;Dels=0.00;FS=4.181;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=-1.718;QD=13.63;ReadPosRankSum=1.718;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:3463,384,0 chrX 120886 . C T 2588 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=13.41;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2621,279,0 chrX 120887 . A G 2471 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=12.80;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2504,273,0 chrX 120925 . C T 700 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=9.59;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:78:733,78,0 chrX 120943 . T C 303.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DP=83;Dels=0.00;FS=47.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=2.403;QD=3.65;ReadPosRankSum=5.573;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:36,47:83:23:333,0,23 chrX 120946 . C T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.358;DP=83;Dels=0.00;FS=47.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-1.796;QD=0.22;ReadPosRankSum=-3.882;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:47,36:83:48:48,0,307 chrX 120949 . T C 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;DP=80;Dels=0.00;FS=49.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-1.882;QD=0.58;ReadPosRankSum=-2.200;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:43,37:80:76:76,0,262 chrX 120958 . C T 102.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.725;DP=79;Dels=0.00;FS=47.940;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=-2.697;QD=1.29;ReadPosRankSum=5.222;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:37,42:79:99:132,0,203 chrX 120971 . G A 332 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=5.35;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:42:365,42,0 chrX 120973 . T C 301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;MQRankSum=-1.732;QD=4.93;ReadPosRankSum=1.675;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:39:334,39,0 chrX 120997 . C T 617 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=7.01;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:75:650,75,0 chrX 121015 . T C 966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=1;QD=9.76;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:999,117,0 chrX 121043 . G A 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.477;DP=122;Dels=0.00;FS=21.225;HaplotypeScore=5.2502;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=1;MQRankSum=0.842;QD=9.68;ReadPosRankSum=3.254;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:6,116:122:99:1214,116,0 chrX 121045 . T C 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.165;DP=128;Dels=0.00;FS=10.189;HaplotypeScore=5.8285;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=1;MQRankSum=0.063;QD=9.28;ReadPosRankSum=3.097;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:6,122:128:99:1221,122,0 chrX 121075 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693;DP=170;Dels=0.00;FS=12.178;HaplotypeScore=12.4753;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=1;MQRankSum=0.914;QD=12.02;ReadPosRankSum=0.339;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:2077,237,0 chrX 121165 . T A 888.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=79;Dels=0.00;FS=30.123;HaplotypeScore=21.5702;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=3.651;QD=11.24;ReadPosRankSum=-0.421;SB=-3.100e+02 GT:AD:DP:GQ:PL 0/1:24,55:79:87:918,0,87 chrX 121168 . T C 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;DP=72;Dels=0.00;FS=10.582;HaplotypeScore=29.1082;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=0;MQRankSum=-3.236;QD=0.21;ReadPosRankSum=1.367;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:46,24:72:45:45,0,769 chrX 121174 . G A 252.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=69;Dels=0.00;FS=6.688;HaplotypeScore=28.3976;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=0;MQRankSum=3.879;QD=3.65;ReadPosRankSum=-3.402;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,21:69:99:282,0,289 chrX 121177 . T C 161.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=61;Dels=0.00;FS=1.703;HaplotypeScore=30.3733;MLEAC=1;MLEAF=0.500;MQ=38.61;MQ0=0;MQRankSum=3.220;QD=2.64;ReadPosRankSum=-4.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,12:61:99:191,0,303 chrX 121180 . C T 314.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;DP=60;Dels=0.00;FS=4.775;HaplotypeScore=23.8624;MLEAC=1;MLEAF=0.500;MQ=37.17;MQ0=0;MQRankSum=-1.786;QD=5.24;ReadPosRankSum=0.259;SB=-1.952e+02 GT:AD:DP:GQ:PL 0/1:6,54:60:11:344,0,11 chrX 121186 . T C 515.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=89;Dels=0.00;FS=16.436;HaplotypeScore=6.9304;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;MQRankSum=-3.721;QD=5.79;ReadPosRankSum=2.761;SB=-8.269e+02 GT:AD:DP:GQ:PL 1/1:11,78:89:21:548,21,0 chrX 121189 . T C 692 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.948;HaplotypeScore=4.4909;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=-2.035;QD=7.28;ReadPosRankSum=2.346;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:84:725,84,0 chrX 121192 . C T 872 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=110;Dels=0.00;FS=2.933;HaplotypeScore=7.2700;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;MQRankSum=0.839;QD=7.93;ReadPosRankSum=-1.376;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:60:905,60,0 chrX 121279 . C T 5260.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.58;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5260,559,0 chrX 121338 . C G 5081.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.8653;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.57;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5081,543,0 chrX 121348 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.60;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5006,523,0 chrX 121384 . T C 5368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=293;Dels=0.00;FS=6.047;HaplotypeScore=20.4363;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.100;QD=18.32;ReadPosRankSum=2.948;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:3,288:293:99:5368,591,0 chrX 121624 . C T 5014.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.5886;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.09;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5014,511,0 chrX 121836 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.38;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1540,159,0 chrX 122039 . C T 646 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=27.7548;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.53;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:72:679,72,0 chrX 122051 . A G 600 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=22.22;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:633,66,0 chrX 122072 . G A 532 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.46;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:565,60,0 chrX 122668 . G C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.01;FS=0.000;HaplotypeScore=24.1845;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=12.42;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:3973,418,0 chrX 122671 . G C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=12.06;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:3847,402,0 chrX 122680 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=12.05;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:1,318:319:99:3844,400,0 chrX 123023 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.94;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3783,408,0 chrX 123314 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=21.29;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3427,393,0 chrX 123370 . C G 2988 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.5673;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=17.37;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3021,342,0 chrX 123378 . A G 2817 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;MQRankSum=-1.281;QD=16.67;ReadPosRankSum=1.650;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2850,321,0 chrX 123380 . C T 2752 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=16.48;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2785,324,0 chrX 123421 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.052;QD=17.42;ReadPosRankSum=2.390;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2924,321,0 chrX 123440 . G T 3069 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=19.42;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3102,318,0 chrX 123508 . C T 2343 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.00;MQ0=0;QD=14.92;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2376,264,0 chrX 123510 . G A 2380 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=117.3200;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=15.35;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2413,261,0 chrX 123517 . G C 2163 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=128.5456;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;MQRankSum=1.575;QD=13.95;ReadPosRankSum=0.225;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2196,246,0 chrX 123546 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=13.43;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1725,189,0 chrX 123553 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;DP=116;Dels=0.00;FS=1.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.59;MQ0=0;MQRankSum=0.637;QD=0.12;ReadPosRankSum=6.041;SB=-1.125e+03 GT:AD:DP:GQ:PL 0/1:16,100:116:44:44,0,88 chrX 123564 . A C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=112;Dels=0.00;FS=2.947;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=0.321;QD=14.16;ReadPosRankSum=2.405;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:1619,180,0 chrX 123590 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=18.31;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1827,195,0 chrX 123643 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.517;QD=23.41;ReadPosRankSum=1.671;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2702,297,0 chrX 123685 . A C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-1.410;QD=21.95;ReadPosRankSum=1.705;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2930,315,0 chrX 123691 . A T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=25.52;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3318,334,0 chrX 123772 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=41.3130;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.10;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1805,183,0 chrX 123832 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=114;Dels=0.00;FS=3.037;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.119;QD=23.38;ReadPosRankSum=2.407;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2698,285,0 chrX 124064 . G A 5697.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.8358;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.10;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5697,616,0 chrX 124142 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=205;Dels=0.00;FS=6.075;HaplotypeScore=15.4365;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.724;QD=21.20;ReadPosRankSum=2.402;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:3,197:205:99:4345,468,0 chrX 124157 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.29;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4302,442,0 chrX 124187 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1905;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.75;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5097,526,0 chrX 124553 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=162;Dels=0.00;FS=3.037;HaplotypeScore=4.8078;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.883;QD=18.30;ReadPosRankSum=1.958;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:2998,327,0 chrX 124555 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.44;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3222,333,0 chrX 124612 . A C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.419;QD=21.39;ReadPosRankSum=1.709;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3272,351,0 chrX 124652 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.25;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3697,396,0 chrX 124691 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=24.01;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3673,393,0 chrX 124862 . A T 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=7.480;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-1.254;QD=23.37;ReadPosRankSum=2.416;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3435,369,0 chrX 124877 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=20.90;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2687,279,0 chrX 124889 . T C 2547 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.06;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2580,279,0 chrX 124924 . A G 2397 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=151;Dels=0.00;FS=11.939;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-1.127;QD=15.87;ReadPosRankSum=2.927;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2430,261,0 chrX 124929 . A G 2400 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=15.79;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:2433,261,0 chrX 124933 . G A 2286 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=14.56;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:2319,240,0 chrX 125021 . A G 5411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=3.895;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.608;QD=23.73;ReadPosRankSum=1.686;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5411,600,0 chrX 125051 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=187;Dels=0.00;FS=2.910;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=-0.772;QD=20.89;ReadPosRankSum=2.423;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,181:187:99:3907,420,0 chrX 125052 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=186;Dels=0.00;FS=5.688;HaplotypeScore=3.3262;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-1.060;QD=21.15;ReadPosRankSum=2.962;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:3933,423,0 chrX 125166 . T C 5281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.750;HaplotypeScore=13.4017;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.160;QD=22.86;ReadPosRankSum=1.717;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5281,582,0 chrX 125244 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.28;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4749,502,0 chrX 125246 . A G 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=206;Dels=0.00;FS=2.990;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.876;QD=22.17;ReadPosRankSum=2.402;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4568,501,0 chrX 125297 . T C 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=208;Dels=0.00;FS=8.724;HaplotypeScore=12.8746;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.156;QD=22.80;ReadPosRankSum=3.376;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:4743,510,0 chrX 125340 . C T 5876.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.77;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5876,601,0 chrX 126843 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.641;QD=18.67;ReadPosRankSum=2.180;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2945,318,0 chrX 126877 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.04;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3571,378,0 chrX 127054 . T C 2912 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.95;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2945,318,0 chrX 127081 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.02;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3006,306,0 chrX 127326 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.42;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2448,261,0 chrX 127567 . A C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.74;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4082,447,0 chrX 127608 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3965;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.70;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3903,426,0 chrX 127680 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=171;Dels=0.00;FS=2.982;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.904;QD=25.51;ReadPosRankSum=2.349;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4362,465,0 chrX 127843 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.58;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3372,357,0 chrX 128403 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=4.643;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.129;QD=25.75;ReadPosRankSum=1.706;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3502,369,0 chrX 128489 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.24;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3297,351,0 chrX 128560 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=24.32;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4062,409,0 chrX 128573 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.19;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4306,436,0 chrX 128646 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.00;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3726,396,0 chrX 128810 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.018;QD=25.33;ReadPosRankSum=1.695;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4762,516,0 chrX 128925 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.31;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3413,363,0 chrX 129119 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.742;QD=22.89;ReadPosRankSum=1.694;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2139,234,0 chrX 129357 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4331,468,0 chrX 129912 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.67;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3181,336,0 chrX 130174 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2448,249,0 chrX 130587 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5949;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.70;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2258,249,0 chrX 130653 . C A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.48;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3405,360,0 chrX 130774 . T A 2542 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2575,270,0 chrX 130957 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.61;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2888,312,0 chrX 131168 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.18;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4594,484,0 chrX 131236 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.90;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3595,381,0 chrX 131240 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.54;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3718,385,0 chrX 131358 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.51;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4022,415,0 chrX 132405 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3143,333,0 chrX 133192 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4668,481,0 chrX 133354 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.22;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3785,405,0 chrX 133964 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.87;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3226,334,0 chrX 134085 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.01;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1778,192,0 chrX 134126 . A T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DP=104;Dels=0.00;FS=3.789;HaplotypeScore=89.1793;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=1.841;QD=0.25;ReadPosRankSum=-3.492;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:96,8:104:56:56,0,165 chrX 134512 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.6543;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.33;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2928,306,0 chrX 136195 . G A 2867 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.11;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2900,297,0 chrX 136202 . C T 2554 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.91;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2587,264,0 chrX 136204 . T C 2367 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.384;QD=15.89;ReadPosRankSum=1.686;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2400,267,0 chrX 136506 . C T 6396.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.87;SB=-3.818e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6396,646,0 chrX 136605 . A G 6283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.344;DP=274;Dels=0.00;FS=9.815;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.536;QD=22.93;ReadPosRankSum=4.470;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:7,267:274:99:6283,673,0 chrX 136623 . A C 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.3149;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.015;QD=21.44;ReadPosRankSum=2.429;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5145,576,0 chrX 136648 . C T 4635.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.56;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4635,501,0 chrX 137767 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3614,390,0 chrX 137840 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.6357;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.47;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4381,471,0 chrX 137936 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5199;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4033,424,0 chrX 138281 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.59;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2227,243,0 chrX 138413 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.32;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2692,279,0 chrX 139013 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=3.739;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.527;QD=22.19;ReadPosRankSum=0.929;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4905,523,0 chrX 139034 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.0765;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.462;QD=23.00;ReadPosRankSum=1.715;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4716,516,0 chrX 139088 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.6817;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.386;QD=20.71;ReadPosRankSum=2.423;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3872,417,0 chrX 139142 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.4944;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.43;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3412,378,0 chrX 139214 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.32;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2225,228,0 chrX 139438 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.55;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1566,162,0 chrX 139468 . A T 2022 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.96;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2055,207,0 chrX 139505 . A G 1207 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1240,138,0 chrX 139506 . A G 1271 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1304,138,0 chrX 139563 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.52;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1497,153,0 chrX 139713 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.768;QD=22.76;ReadPosRankSum=1.702;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2650,297,0 chrX 139819 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.550;QD=20.84;ReadPosRankSum=1.623;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2013,225,0 chrX 140117 . A G 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.286;QD=18.91;ReadPosRankSum=1.698;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1943,210,0 chrX 140129 . C T 1600 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=18.60;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1633,177,0 chrX 140130 . G A 1686 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=19.84;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1719,180,0 chrX 140133 . T G 1687 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=19.85;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1720,183,0 chrX 140135 . T C 1726 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.459;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;MQRankSum=-2.062;QD=19.39;ReadPosRankSum=2.367;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1759,186,0 chrX 140161 . G C 1959 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=20.84;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1992,210,0 chrX 140231 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.82;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2064,213,0 chrX 140417 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.78;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2412,249,0 chrX 140649 . T A 3121 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.77;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3154,330,0 chrX 140782 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3990,438,0 chrX 140874 . A G 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=7.487;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.447;QD=23.74;ReadPosRankSum=2.263;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4392,489,0 chrX 141376 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2574,276,0 chrX 141900 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.55;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3603,367,0 chrX 142013 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.458;QD=21.57;ReadPosRankSum=1.682;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3053,327,0 chrX 142022 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.76;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3036,312,0 chrX 142168 . C T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.79;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4660,492,0 chrX 142256 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0689;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.99;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4073,421,0 chrX 142640 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.1759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3820,385,0 chrX 142900 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.0264;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.70;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4496,463,0 chrX 142993 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.58;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3324,354,0 chrX 143163 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.77;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2123,219,0 chrX 143166 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.17;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2044,213,0 chrX 144131 . T C 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.652;QD=20.23;ReadPosRankSum=1.695;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1955,210,0 chrX 144137 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.05;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2269,234,0 chrX 145710 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2851;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.32;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3158,336,0 chrX 146902 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2049,225,0 chrX 148061 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3991,426,0 chrX 149011 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.89;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2894,315,0 chrX 149085 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=2.956;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.191;QD=22.71;ReadPosRankSum=2.395;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3122,336,0 chrX 149101 . A G 2956 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.28;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2989,318,0 chrX 149152 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.24;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1923,201,0 chrX 149212 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2835,291,0 chrX 149320 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.81;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3500,375,0 chrX 149401 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3432,369,0 chrX 149570 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.6186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5072,535,0 chrX 149680 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.5801;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.77;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5111,529,0 chrX 149821 . T C 6624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.069;DP=262;Dels=0.00;FS=10.523;HaplotypeScore=16.6821;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.842;QD=25.28;ReadPosRankSum=4.129;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:6,256:262:99:6624,712,0 chrX 149864 . A G 6662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=275;Dels=0.00;FS=13.569;HaplotypeScore=22.6529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.158;QD=24.23;ReadPosRankSum=2.967;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:3,270:275:99:6662,727,0 chrX 150178 . C A 5982.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.32;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5982,622,0 chrX 150181 . G A 5844.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=4.4212;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.64;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5844,595,0 chrX 150264 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.56;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3207,345,0 chrX 150265 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.01;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3342,343,0 chrX 150482 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=2.997;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.050;QD=24.04;ReadPosRankSum=2.310;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2990,318,0 chrX 150563 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.42;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2230,243,0 chrX 150688 . C A 1811 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.82;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1844,195,0 chrX 150695 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.22;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1811,195,0 chrX 150706 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.78;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1719,177,0 chrX 150764 . A C 1157 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.43;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1190,132,0 chrX 150818 . A G 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.743;QD=23.48;ReadPosRankSum=1.650;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1019,108,0 chrX 150829 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.49;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1000,108,0 chrX 150921 . T C 840 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.71;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:93:873,93,0 chrX 151221 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4445,475,0 chrX 151494 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.20;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3773,394,0 chrX 151609 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3553,364,0 chrX 151845 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4757,496,0 chrX 152136 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.98;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3957,415,0 chrX 152244 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=4.467;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.296;QD=20.77;ReadPosRankSum=1.678;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4030,429,0 chrX 152412 . C G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4081;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3261,348,0 chrX 152475 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=3.396;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.374;QD=22.94;ReadPosRankSum=1.709;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3601,387,0 chrX 152577 . A T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3482,366,0 chrX 153057 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2262,243,0 chrX 153741 . A G 1319.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.484;DP=209;Dels=0.00;FS=12.899;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=91;MQRankSum=3.600;QD=6.31;ReadPosRankSum=3.341;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:89,120:209:99:1349,0,482 chrX 154059 . A G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=9.53;MQ0=141;MQRankSum=-1.789;QD=0.26;ReadPosRankSum=-0.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,85:192:79:79,0,293 chrX 156976 . A T 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.268;QD=24.13;ReadPosRankSum=1.661;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2374,243,0 chrX 157487 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.1041;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.82;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3250,360,0 chrX 157619 . A T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4003,438,0 chrX 157821 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.285;QD=24.62;ReadPosRankSum=1.710;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3890,417,0 chrX 159788 . A T 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.827;QD=23.04;ReadPosRankSum=1.706;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3120,324,0 chrX 159830 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.12;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2448,258,0 chrX 159859 . A G 2291 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.02;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2324,249,0 chrX 159893 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.440;QD=21.32;ReadPosRankSum=1.677;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2719,297,0 chrX 159934 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=23.29;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2781,291,0 chrX 159938 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=23.38;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2722,276,0 chrX 160149 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=15.27;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1896,201,0 chrX 160169 . G A 1736 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=13.78;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1769,186,0 chrX 160171 . G A 1684 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=13.37;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1717,183,0 chrX 160173 . C A 1667 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=113.5465;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=13.34;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1700,183,0 chrX 160189 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=9.51;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1421,153,0 chrX 160190 . A T 1439 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=9.86;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1472,153,0 chrX 160206 . G C 1475 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.52;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1508,159,0 chrX 160222 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.774;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;MQRankSum=-1.710;QD=10.07;ReadPosRankSum=1.710;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:1594,174,0 chrX 160223 . C A 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.802;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=-1.688;QD=10.58;ReadPosRankSum=1.688;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:1684,177,0 chrX 160269 . T C 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=7.760;HaplotypeScore=113.6923;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;MQRankSum=-1.839;QD=11.00;ReadPosRankSum=2.397;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:1584,171,0 chrX 160275 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=12.81;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1814,186,0 chrX 160399 . A C 2973 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=22.87;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3006,315,0 chrX 160500 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5820;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.03;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2241,240,0 chrX 160930 . G A 5887.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.16;SB=-3.117e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5887,613,0 chrX 161017 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.47;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5393,591,0 chrX 161023 . C T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=4.2636;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.03;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5464,594,0 chrX 161596 . A G 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.480;QD=19.80;ReadPosRankSum=2.398;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,93:97:99:1954,216,0 chrX 162192 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.104;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.848;QD=22.73;ReadPosRankSum=1.708;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3238,351,0 chrX 162208 . G T 2870 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.42;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2903,318,0 chrX 162223 . A T 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.430;QD=20.97;ReadPosRankSum=1.704;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2654,276,0 chrX 162228 . C G 2268 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.22;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2301,246,0 chrX 162327 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=118;Dels=0.00;FS=5.252;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.167;QD=21.72;ReadPosRankSum=2.922;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,112:118:99:2596,279,0 chrX 162424 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.02;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2257,240,0 chrX 162437 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2047,210,0 chrX 162522 . C A 2915 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.80;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2948,303,0 chrX 162765 . C A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.66;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3943,409,0 chrX 162768 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.77;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4009,409,0 chrX 162822 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.59;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:3853,429,0 chrX 162832 . A C 4128.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.29;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4128,444,0 chrX 162922 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.06;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4588,475,0 chrX 162937 . C T 4718.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=23.24;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4718,484,0 chrX 163370 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2101;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=25.11;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3816,388,0 chrX 163417 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.50;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3308,337,0 chrX 163422 . T C 2966 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=20.32;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2999,324,0 chrX 163446 . A T 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=137;Dels=0.00;FS=2.764;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.583;QD=18.42;ReadPosRankSum=2.360;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2557,279,0 chrX 163467 . G C 2461 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.37;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2494,279,0 chrX 163507 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=141;Dels=0.00;FS=8.718;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.543;QD=21.32;ReadPosRankSum=2.397;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3039,324,0 chrX 163656 . C G 2530 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.39;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2563,282,0 chrX 163830 . A C 2891 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2924,318,0 chrX 163958 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.20;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3436,363,0 chrX 163993 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.01;FS=3.577;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.259;QD=25.21;ReadPosRankSum=1.707;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3529,381,0 chrX 164155 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.22;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2912,300,0 chrX 164308 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.67;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2589,267,0 chrX 164955 . C G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3505,372,0 chrX 165369 . C G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.77;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3691,402,0 chrX 165714 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.732;QD=23.64;ReadPosRankSum=1.687;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1830,201,0 chrX 166575 . T C 5023.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.04;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5023,552,0 chrX 166669 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=190;Dels=0.00;FS=3.150;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.021;QD=22.83;ReadPosRankSum=1.714;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4337,460,0 chrX 166814 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4469,480,0 chrX 167196 . G A 5780.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.91;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5780,601,0 chrX 167289 . C T 5196.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5196,544,0 chrX 167370 . G A 4823.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.7996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4823,511,0 chrX 167814 . C T 6024.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.44;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6024,628,0 chrX 168861 . A G 5394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=248;Dels=0.00;FS=16.325;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.675;QD=21.75;ReadPosRankSum=3.823;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:5,243:248:99:5394,600,0 chrX 170079 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=177;Dels=0.00;FS=9.334;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.121;QD=24.72;ReadPosRankSum=2.948;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:3,172:177:99:4375,460,0 chrX 170556 . T A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.16;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3799,399,0 chrX 170610 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.94;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4747,490,0 chrX 170649 . C A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1912;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.98;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4629,495,0 chrX 171357 . A G 5689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=235;Dels=0.00;FS=6.057;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.047;QD=24.21;ReadPosRankSum=2.791;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5689,604,0 chrX 171615 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.54;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2941,309,0 chrX 171627 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.73;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2988,315,0 chrX 171764 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=3.024;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.819;QD=21.59;ReadPosRankSum=2.396;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3994,435,0 chrX 172240 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.089;QD=21.64;ReadPosRankSum=1.707;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3063,330,0 chrX 172657 . A T 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.307;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.034;QD=23.46;ReadPosRankSum=1.704;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2942,306,0 chrX 172660 . A G 2735 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.71;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2768,297,0 chrX 175555 . T A 6408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=254;Dels=0.00;FS=2.834;HaplotypeScore=12.1229;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.314;QD=25.23;ReadPosRankSum=2.430;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:6408,661,0 chrX 176664 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.52;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4962,546,0 chrX 177614 . A T 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.079;QD=23.61;ReadPosRankSum=1.706;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3149,322,0 chrX 178010 . G T 2175 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.19;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2208,228,0 chrX 180118 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.3332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3580,370,0 chrX 181719 . A T 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.618;DP=187;Dels=0.00;FS=9.172;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.167;QD=24.34;ReadPosRankSum=2.909;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4552,466,0 chrX 181922 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5001,526,0 chrX 183608 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3640,387,0 chrX 183738 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.20;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3619,387,0 chrX 183827 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.860;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.943;QD=22.41;ReadPosRankSum=1.674;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4033,427,0 chrX 183933 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=3.468;HaplotypeScore=9.0822;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.375;QD=21.78;ReadPosRankSum=1.703;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2668,285,0 chrX 184244 . G C 2366 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.20;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2399,252,0 chrX 184421 . G T 2457 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2490,255,0 chrX 184592 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.77;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3505,358,0 chrX 185090 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.003;QD=25.20;ReadPosRankSum=1.666;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5291,562,0 chrX 185495 . A T 611 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:644,66,0 chrX 185538 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1578,165,0 chrX 185621 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.39;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1862,192,0 chrX 185641 . T C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.562;QD=23.40;ReadPosRankSum=1.687;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1835,198,0 chrX 185696 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.60;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2655,288,0 chrX 186025 . A C 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=2.920;HaplotypeScore=8.9344;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.068;QD=22.33;ReadPosRankSum=2.418;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5225,564,0 chrX 186317 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.952;QD=20.49;ReadPosRankSum=1.694;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3750,411,0 chrX 186681 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9416;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.29;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1992,210,0 chrX 187012 . T A 573 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:66:606,66,0 chrX 187601 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.26;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3361,351,0 chrX 187652 . G T 2910 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3365;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.40;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2943,321,0 chrX 187765 . A T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=109;Dels=0.00;FS=13.128;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-2.087;QD=21.60;ReadPosRankSum=3.231;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:2387,246,0 chrX 187781 . T G 2360 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.07;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2393,255,0 chrX 188153 . G C 4730.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.7055;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.31;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:4730,510,0 chrX 188331 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.36;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4788,528,0 chrX 188568 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3000,312,0 chrX 188645 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.656;HaplotypeScore=8.4990;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.569;QD=24.05;ReadPosRankSum=2.417;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3632,393,0 chrX 188961 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.87;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3914,409,0 chrX 189030 . C T 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=148;Dels=0.00;FS=19.817;HaplotypeScore=117.1619;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=5.713;QD=9.54;ReadPosRankSum=-5.913;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:44,102:148:99:1445,162,0 chrX 189105 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.08;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2727,282,0 chrX 189151 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.041;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.012;QD=22.49;ReadPosRankSum=1.683;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3227,345,0 chrX 189441 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.54;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2054,219,0 chrX 189443 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.20;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1925,213,0 chrX 189631 . G T 1968 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.62;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2001,201,0 chrX 190081 . T G 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.046;QD=25.44;ReadPosRankSum=1.682;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5267,562,0 chrX 190205 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4133,424,0 chrX 190302 . T A 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=170;Dels=0.00;FS=4.797;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.712;QD=24.88;ReadPosRankSum=1.712;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4230,442,0 chrX 190560 . G A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.4992;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.95;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4590,469,0 chrX 191353 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.168;QD=25.30;ReadPosRankSum=1.681;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3416,366,0 chrX 191872 . C T 5067.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5067,535,0 chrX 192041 . A G 6581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=283;Dels=0.00;FS=6.713;HaplotypeScore=18.3291;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.201;QD=23.25;ReadPosRankSum=2.327;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:2,279:283:99:6581,723,0 chrX 192487 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=4.180;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.612;QD=23.70;ReadPosRankSum=1.708;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3460,381,0 chrX 192956 . C T 6319.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-3.662e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6319,640,0 chrX 193388 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.528;QD=20.31;ReadPosRankSum=2.386;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1597,171,0 chrX 193406 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.69;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1576,162,0 chrX 193554 . A T 273 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.193;QD=15.17;ReadPosRankSum=1.542;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:33:306,33,0 chrX 193639 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.30;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1121,117,0 chrX 193717 . T G 1295 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1328,144,0 chrX 193829 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2762,306,0 chrX 194040 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.96;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4368,465,0 chrX 194081 . G A 5816.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.6631;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.51;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5816,589,0 chrX 194790 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.5442;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.459;QD=23.00;ReadPosRankSum=-1.123;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4990,485,0 chrX 194922 . A T 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3844;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.933;QD=24.38;ReadPosRankSum=1.673;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2886,294,0 chrX 195076 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2830,297,0 chrX 195349 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=127;Dels=0.00;FS=2.608;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=1.404;QD=23.70;ReadPosRankSum=2.411;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3043,315,0 chrX 195664 . G C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.9518;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.76;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4051,438,0 chrX 195947 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.94;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4102,415,0 chrX 195964 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.37;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3606,390,0 chrX 196206 . C G 3050 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.64;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:3083,327,0 chrX 196451 . G A 4944.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.35;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4944,508,0 chrX 196502 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.202;QD=20.69;ReadPosRankSum=1.691;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3538,387,0 chrX 196517 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.80;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3556,372,0 chrX 196724 . A C 6707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=271;Dels=0.00;FS=4.771;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.296;QD=24.75;ReadPosRankSum=1.719;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6707,753,0 chrX 197018 . G C 4878.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.3938;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.57;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,201:207:99:4878,523,0 chrX 197272 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6042;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=26.49;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2417,255,0 chrX 197405 . G T 1007 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=17.07;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1040,108,0 chrX 197407 . T G 961 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=16.29;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:994,108,0 chrX 197458 . A T 976 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;MQRankSum=-0.560;QD=14.35;ReadPosRankSum=1.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1009,111,0 chrX 197480 . A G 1098 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=-1.237;QD=17.43;ReadPosRankSum=1.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1131,120,0 chrX 197486 . G A 1036 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=16.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1069,111,0 chrX 204328 . C A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrX 204339 . C G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.75;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:78,9,0 chrX 204341 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.25;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:82,9,0 chrX 204343 . C T 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:89,9,0 chrX 204353 . C T 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=8.21;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:156,18,0 chrX 204354 . A G 110.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.34;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:143,18,0 chrX 204356 . G A 110.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.34;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:143,18,0 chrX 204359 . T C 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=6.95;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:158,18,0 chrX 204371 . T C 131.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=7.29;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:164,18,0 chrX 204379 . C T 136.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.81;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:169,18,0 chrX 204387 . A T 133.13 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=5.33;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:166,18,0 chrX 204403 . C T 328 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.65;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:361,39,0 chrX 204414 . A T 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=9.46;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:39:364,39,0 chrX 204420 . T C 317 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.32;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:350,39,0 chrX 204422 . A T 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.85;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:368,39,0 chrX 204425 . T C 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.62;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:360,39,0 chrX 204426 . G A 337 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.91;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:39:370,39,0 chrX 204436 . C A 325 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=7.93;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:39:358,39,0 chrX 204479 . A G 449 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.14;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:482,54,0 chrX 204480 . G C 433 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.70;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:51:466,51,0 chrX 204483 . A G 482 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=56.0575;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.03;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:515,54,0 chrX 204588 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=23.31;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1828,186,0 chrX 204589 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=23.56;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1871,189,0 chrX 204641 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.692;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;MQRankSum=-0.238;QD=20.84;ReadPosRankSum=2.310;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1867,201,0 chrX 204728 . A G 2724 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.69;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2757,306,0 chrX 204849 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.51;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1879,195,0 chrX 205042 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.13;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3618,381,0 chrX 205203 . A T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3859,400,0 chrX 205329 . C T 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.353;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.228;QD=22.69;ReadPosRankSum=0.353;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2415,241,0 chrX 205704 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.457;QD=24.47;ReadPosRankSum=1.713;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4478,475,0 chrX 205745 . G C 4577.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=22.7141;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.12;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4577,492,0 chrX 205934 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=5.215;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.757;QD=23.55;ReadPosRankSum=1.665;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2459,264,0 chrX 206111 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2745,303,0 chrX 206271 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.49;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3228,330,0 chrX 206537 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=7.209;HaplotypeScore=13.3524;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.100;QD=23.48;ReadPosRankSum=2.369;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3616,393,0 chrX 207695 . T A 2182 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.46;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2215,228,0 chrX 208641 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.68;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2922,306,0 chrX 209321 . T A 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.296;QD=26.01;ReadPosRankSum=1.691;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4343,451,0 chrX 210345 . C A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.92;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4520,460,0 chrX 210759 . G C 4318.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.8519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4318,462,0 chrX 211343 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=2.973;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.231;QD=23.73;ReadPosRankSum=2.412;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4698,505,0 chrX 211437 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=188;Dels=0.00;FS=3.029;HaplotypeScore=10.6596;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.718;QD=22.29;ReadPosRankSum=2.384;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4190,444,0 chrX 211638 . A T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.28;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3562,370,0 chrX 211845 . C A 3011 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3044,324,0 chrX 212471 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9669;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.34;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3173,333,0 chrX 213011 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.55;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3796,399,0 chrX 213175 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.68;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3827,411,0 chrX 214253 . A G 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.923;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.164;QD=23.38;ReadPosRankSum=1.714;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4466,492,0 chrX 214698 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=3.840;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.607;QD=24.57;ReadPosRankSum=1.682;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3465,372,0 chrX 215069 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.34;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4915,499,0 chrX 215389 . A T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.65;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4411,463,0 chrX 215482 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=114;Dels=0.00;FS=10.772;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.063;QD=24.06;ReadPosRankSum=2.920;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:3,110:114:99:2776,300,0 chrX 215637 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=17.3456;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.260;QD=20.99;ReadPosRankSum=2.349;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2594,276,0 chrX 215960 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6264;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.91;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4075,409,0 chrX 216038 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3301,354,0 chrX 217744 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.6801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.04;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3678,379,0 chrX 218007 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=188;Dels=0.00;FS=3.034;HaplotypeScore=12.2737;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.293;QD=24.41;ReadPosRankSum=1.694;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,182:188:99:4590,492,0 chrX 218338 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3897,417,0 chrX 219104 . G C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2711;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.03;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3412,366,0 chrX 219324 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.665;QD=23.23;ReadPosRankSum=1.710;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3647,405,0 chrX 219354 . A C 3120 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.28;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3153,342,0 chrX 219722 . C G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.19;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3846,414,0 chrX 220315 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.68;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2049,216,0 chrX 220326 . C A 2278 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.12;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2311,237,0 chrX 220401 . A C 2961 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.46;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2994,315,0 chrX 220527 . T A 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.247;QD=22.84;ReadPosRankSum=1.697;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2294,237,0 chrX 220622 . G C 1949 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.66;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1982,210,0 chrX 220988 . T A 2863 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.47;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2896,294,0 chrX 221606 . G T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4122,438,0 chrX 222563 . T G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1649;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.16;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3624,384,0 chrX 222721 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.61;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3569,367,0 chrX 222822 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2777,306,0 chrX 223465 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1845,192,0 chrX 224217 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=2.574;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.888;QD=23.20;ReadPosRankSum=2.404;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3758,402,0 chrX 225914 . T C 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=141;Dels=0.00;FS=3.301;HaplotypeScore=26.5678;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.536;QD=15.91;ReadPosRankSum=1.682;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2276,252,0 chrX 225965 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.39;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3310,342,0 chrX 226665 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1677,183,0 chrX 227303 . A T 3179 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.94;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3212,325,0 chrX 227829 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=3.834;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.369;QD=22.43;ReadPosRankSum=1.689;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3679,405,0 chrX 227925 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3882,417,0 chrX 228198 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-2.012;QD=23.66;ReadPosRankSum=2.399;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3502,372,0 chrX 228673 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1277,129,0 chrX 228732 . A G 866 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:899,96,0 chrX 228793 . A T 1040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.115;QD=23.11;ReadPosRankSum=1.655;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1073,117,0 chrX 230464 . G C 3157 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.23;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3190,354,0 chrX 230986 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4075;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.20;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4847,514,0 chrX 239866 . T G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.893;QD=22.00;ReadPosRankSum=1.651;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2849,315,0 chrX 240082 . C A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3522,372,0 chrX 241271 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2487,255,0 chrX 245956 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3699,393,0 chrX 247938 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=3.635;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.125;QD=22.90;ReadPosRankSum=1.661;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2300,252,0 chrX 248169 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3139,339,0 chrX 248312 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.49;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3666,376,0 chrX 248329 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.11;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3273,351,0 chrX 248378 . G C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.58;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3274,345,0 chrX 248878 . C A 2408 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2441,252,0 chrX 248957 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1707,177,0 chrX 249343 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.22;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3048,324,0 chrX 249923 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3875,411,0 chrX 250151 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=161;Dels=0.00;FS=2.949;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.099;QD=22.14;ReadPosRankSum=2.404;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3565,384,0 chrX 250541 . T A 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.279;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.572;QD=23.16;ReadPosRankSum=1.680;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4631,507,0 chrX 252564 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=131;Dels=0.00;FS=13.836;HaplotypeScore=13.5235;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.311;QD=21.90;ReadPosRankSum=3.390;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:4,125:131:99:2902,321,0 chrX 252640 . G C 2697 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.47;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2730,300,0 chrX 257035 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3598,375,0 chrX 257521 . C A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3688,408,0 chrX 258025 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=200;Dels=0.00;FS=9.707;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.601;QD=23.58;ReadPosRankSum=2.884;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4715,504,0 chrX 258142 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.9548;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.08;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4247,436,0 chrX 260294 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=15.05;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:2757,294,0 chrX 262898 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.89;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3512,375,0 chrX 263508 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.21;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2730,288,0 chrX 265910 . C G 1293 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=10.4449;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.21;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1326,144,0 chrX 265950 . T G 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.906;DP=73;Dels=0.00;FS=88.878;HaplotypeScore=17.9133;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-1.324;QD=1.10;ReadPosRankSum=-1.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,31:73:99:110,0,886 chrX 266741 . T A 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=3.6831;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.176;QD=22.21;ReadPosRankSum=-0.235;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1832,195,0 chrX 267209 . T C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=81;Dels=0.00;FS=3.606;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.044;QD=21.95;ReadPosRankSum=1.688;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,77:81:99:1811,195,0 chrX 267355 . A C 1908 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.78;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1941,210,0 chrX 268171 . A G 2015 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2048,219,0 chrX 272191 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4589,492,0 chrX 272847 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=23.56;ReadPosRankSum=1.701;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2695,297,0 chrX 275952 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.86;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3306,334,0 chrX 276453 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2163,222,0 chrX 277206 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;DP=163;Dels=0.00;FS=2.741;HaplotypeScore=13.4786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.791;QD=22.71;ReadPosRankSum=2.389;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3701,383,0 chrX 277465 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.03;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3855,426,0 chrX 277623 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3291,351,0 chrX 277760 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.7376;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.50;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3361,340,0 chrX 279703 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.9449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4975,511,0 chrX 280337 . A G 4945.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4945,529,0 chrX 281003 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.01;FS=3.098;HaplotypeScore=9.7851;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.970;QD=19.29;ReadPosRankSum=1.697;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2020,216,0 chrX 281006 . C A 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1987;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.275;QD=21.16;ReadPosRankSum=1.601;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2297,231,0 chrX 281056 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.341;QD=22.79;ReadPosRankSum=1.676;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2859,306,0 chrX 282738 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.299;QD=25.00;ReadPosRankSum=1.710;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4000,423,0 chrX 284309 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.75;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4094,424,0 chrX 286186 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.739;DP=153;Dels=0.00;FS=8.040;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.364;QD=21.58;ReadPosRankSum=3.708;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:5,147:153:99:3302,351,0 chrX 287737 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.7589;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.54;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3765,391,0 chrX 288319 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=4.025;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=21.60;ReadPosRankSum=1.684;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3165,351,0 chrX 288609 . G A 5400.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.66;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5400,556,0 chrX 290883 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.38;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2418,249,0 chrX 290968 . T C 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.588;QD=23.02;ReadPosRankSum=1.699;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2473,270,0 chrX 291248 . G T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8204;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.97;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3377,366,0 chrX 291961 . G A 7213.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=21.3929;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.62;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:7213,754,0 chrX 292070 . C T 7280.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.7269;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.11;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:7280,760,0 chrX 292437 . G A 5266.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=6.7445;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=17.21;SB=-3.922e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:5266,550,0 chrX 292616 . T C 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=274;Dels=0.00;FS=9.672;HaplotypeScore=14.8715;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.797;QD=21.73;ReadPosRankSum=2.937;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:3,269:274:99:5953,660,0 chrX 292930 . T C 6666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=261;Dels=0.00;FS=10.843;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=1.857;QD=25.54;ReadPosRankSum=3.825;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:5,256:261:99:6666,706,0 chrX 293117 . T C 476.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.926;DP=527;Dels=0.00;FS=0.660;HaplotypeScore=28.7556;MLEAC=1;MLEAF=0.500;MQ=37.57;MQ0=0;MQRankSum=-11.074;QD=0.90;ReadPosRankSum=-2.978;SB=-2.379e+03 GT:AD:DP:GQ:PL 0/1:282,231:527:99:506,0,3068 chrX 293118 . A T 417.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.117;DP=526;Dels=0.00;FS=0.653;HaplotypeScore=28.7556;MLEAC=1;MLEAF=0.500;MQ=37.52;MQ0=0;MQRankSum=-11.805;QD=0.79;ReadPosRankSum=4.984;SB=-2.464e+03 GT:AD:DP:GQ:PL 0/1:294,231:526:99:447,0,3812 chrX 293121 . G A 621.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.839;DP=553;Dels=0.00;FS=6.969;HaplotypeScore=25.4496;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=0;MQRankSum=-7.810;QD=1.12;ReadPosRankSum=7.521;SB=-2.787e+03 GT:AD:DP:GQ:PL 0/1:288,265:553:99:651,0,3988 chrX 293133 . G A 1358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;DP=557;Dels=0.00;FS=7.722;HaplotypeScore=15.0489;MLEAC=1;MLEAF=0.500;MQ=36.49;MQ0=0;MQRankSum=-5.165;QD=2.44;ReadPosRankSum=13.511;SB=-2.916e+03 GT:AD:DP:GQ:PL 0/1:236,319:557:99:1388,0,2704 chrX 293137 . C T 1610.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.200;DP=561;Dels=0.00;FS=8.439;HaplotypeScore=30.2882;MLEAC=1;MLEAF=0.500;MQ=36.58;MQ0=0;MQRankSum=-5.300;QD=2.87;ReadPosRankSum=16.569;SB=-3.614e+03 GT:AD:DP:GQ:PL 0/1:227,333:561:99:1640,0,2544 chrX 293142 . C A 2156.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.193;DP=578;Dels=0.00;FS=9.977;HaplotypeScore=36.0499;MLEAC=1;MLEAF=0.500;MQ=37.48;MQ0=0;MQRankSum=-3.133;QD=3.73;ReadPosRankSum=-18.626;SB=-1.835e+03 GT:AD:DP:GQ:PL 0/1:358,213:578:99:2186,0,2042 chrX 293188 . C T 7492.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.77;SB=-4.196e+03 GT:AD:DP:GQ:PL 1/1:0,379:379:99:7492,766,0 chrX 293222 . A G 8755.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.072;DP=378;Dels=0.00;FS=10.679;HaplotypeScore=33.9380;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.503;QD=23.16;ReadPosRankSum=4.148;SB=-4.210e+03 GT:AD:DP:GQ:PL 1/1:6,369:378:99:8755,934,0 chrX 293531 . G A 5462.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.6023;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.60;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5462,565,0 chrX 294080 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.71;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3272,360,0 chrX 294332 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=225;Dels=0.00;FS=19.705;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-0.302;QD=18.84;ReadPosRankSum=3.554;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:5,220:225:99:4238,503,0 chrX 294333 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.136;DP=229;Dels=0.00;FS=23.678;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-0.274;QD=18.62;ReadPosRankSum=3.922;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:6,221:228:99:4264,503,0 chrX 294484 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;DP=150;Dels=0.00;FS=14.798;HaplotypeScore=15.5172;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=0;MQRankSum=5.632;QD=0.09;ReadPosRankSum=-5.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,13:150:43:43,0,282 chrX 294490 . C T 577 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=3.93;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:66:610,66,0 chrX 296106 . A T 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.6203;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.205;QD=25.96;ReadPosRankSum=1.714;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5114,523,0 chrX 296872 . T A 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=174;Dels=0.00;FS=2.809;HaplotypeScore=16.5583;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.673;QD=24.79;ReadPosRankSum=2.266;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4314,439,0 chrX 297043 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.13;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3700,393,0 chrX 297732 . T G 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=185;Dels=0.00;FS=7.571;HaplotypeScore=12.2130;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-2.042;QD=23.71;ReadPosRankSum=1.581;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:4387,466,0 chrX 297830 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.5168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.30;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4327,462,0 chrX 297976 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.95;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3543,370,0 chrX 298682 . T G 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.446;QD=22.47;ReadPosRankSum=1.304;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2213,240,0 chrX 298915 . C T 351 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:42:384,42,0 chrX 300626 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.89;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2780,279,0 chrX 301867 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=3.030;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.576;QD=24.50;ReadPosRankSum=2.415;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3504,375,0 chrX 303269 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=6.950;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.456;QD=24.77;ReadPosRankSum=2.393;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4285,459,0 chrX 303316 . C A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.8141;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.82;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4518,460,0 chrX 303583 . C T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.85;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5120,552,0 chrX 305977 . G T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.48;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4015,421,0 chrX 306632 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.42;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3834,397,0 chrX 307100 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.237;QD=26.27;ReadPosRankSum=0.312;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3652,361,0 chrX 307487 . C G 3150 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3183,342,0 chrX 307788 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2442,258,0 chrX 309358 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.588;QD=23.96;ReadPosRankSum=1.639;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2717,288,0 chrX 310784 . T C 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.498;QD=22.11;ReadPosRankSum=1.685;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1647,180,0 chrX 311273 . T G 3962.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=23.4963;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.89;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3962,426,0 chrX 312403 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=24.04;ReadPosRankSum=1.713;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4424,474,0 chrX 312482 . T G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.23;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4845,517,0 chrX 315237 . T C 6275.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.25;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,277:282:99:6275,687,0 chrX 316206 . C T 5906.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=20.0719;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.87;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,266:270:99:5906,628,0 chrX 316285 . A G 5987.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=22.3246;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.57;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5987,634,0 chrX 316535 . C T 5881.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.3763;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.06;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:5881,601,0 chrX 316571 . G T 5861.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.7658;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.87;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:5861,598,0 chrX 316590 . T C 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;DP=268;Dels=0.00;FS=6.070;HaplotypeScore=9.6233;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.832;QD=20.00;ReadPosRankSum=2.174;SB=-3.410e+03 GT:AD:DP:GQ:PL 1/1:2,265:268:99:5360,574,0 chrX 319272 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.36;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2469,258,0 chrX 319864 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.2414;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.98;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1950,204,0 chrX 320259 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.0357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4254,439,0 chrX 320611 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.57;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4101,415,0 chrX 320612 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.94;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3817,411,0 chrX 323030 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.7341;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=26.15;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4472,457,0 chrX 323069 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=25.20;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4132,438,0 chrX 323146 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=24.33;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3503,375,0 chrX 323294 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=24.80;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3299,334,0 chrX 323313 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=22.07;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2681,273,0 chrX 323314 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=22.92;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2715,273,0 chrX 323341 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=16.89;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1739,186,0 chrX 323357 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=14.50;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1483,153,0 chrX 323361 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=13.17;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1390,147,0 chrX 323385 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.68;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2009,222,0 chrX 323463 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.85;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2458,267,0 chrX 323601 . C G 3549.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0916;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.82;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3549,393,0 chrX 323637 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.94;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3193,345,0 chrX 323703 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=135;Dels=0.01;FS=3.031;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.971;QD=23.37;ReadPosRankSum=2.376;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3188,342,0 chrX 323802 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3564,373,0 chrX 323895 . T C 5157.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5157,547,0 chrX 324264 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5901;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.61;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3460,378,0 chrX 324432 . A C 2379 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2412,255,0 chrX 324627 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1584,177,0 chrX 324792 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.88;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1252,129,0 chrX 324830 . T A 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.418;QD=24.59;ReadPosRankSum=1.673;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1459,150,0 chrX 325332 . G A 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DP=124;Dels=0.00;FS=3.346;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.988;QD=22.28;ReadPosRankSum=-0.472;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2796,280,0 chrX 325369 . A C 2478 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.60;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2511,267,0 chrX 325435 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.74;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2905,300,0 chrX 325505 . A T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.91;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3964,412,0 chrX 325758 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=186;Dels=0.00;FS=6.092;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.773;QD=24.40;ReadPosRankSum=2.930;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4538,486,0 chrX 325803 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3980,406,0 chrX 325860 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4105,435,0 chrX 325946 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=185;Dels=0.00;FS=6.005;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.810;QD=23.68;ReadPosRankSum=2.930;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4381,480,0 chrX 326091 . C G 3508.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3508,390,0 chrX 326293 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.251;QD=23.14;ReadPosRankSum=1.667;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3703,396,0 chrX 326422 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3720,390,0 chrX 326497 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.357;QD=23.96;ReadPosRankSum=1.706;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3172,339,0 chrX 326617 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3009,309,0 chrX 326683 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5329;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.491;QD=23.14;ReadPosRankSum=1.702;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2694,291,0 chrX 326715 . T C 2133 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.44;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2166,237,0 chrX 326989 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3768,382,0 chrX 327501 . C T 4813.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3141;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.47;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4813,493,0 chrX 327718 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.23;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3375,372,0 chrX 327809 . C G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.19;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3571,381,0 chrX 327851 . A G 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.9697;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.687;QD=23.50;ReadPosRankSum=1.705;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3017,324,0 chrX 327946 . C G 1984 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=14.7708;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.67;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2017,225,0 chrX 327986 . G C 2327 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.35;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2360,255,0 chrX 328162 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2529,258,0 chrX 328274 . G T 2438 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4106;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.44;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2471,261,0 chrX 328451 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=3.372;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.277;QD=21.25;ReadPosRankSum=1.628;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2179,243,0 chrX 328739 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.68;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4520,457,0 chrX 328877 . G T 4797.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.4771;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.98;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4797,487,0 chrX 329090 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=169;Dels=0.00;FS=2.981;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.472;QD=23.43;ReadPosRankSum=2.421;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3959,435,0 chrX 329192 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.62;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2796,300,0 chrX 329730 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7184;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3427,375,0 chrX 329858 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.457;QD=23.91;ReadPosRankSum=1.668;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3922,420,0 chrX 329903 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.34;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3675,387,0 chrX 330001 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.02;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3868,414,0 chrX 330050 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8540;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.84;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3623,387,0 chrX 330144 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=7.7465;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.32;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2265,234,0 chrX 330168 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.96;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2185,228,0 chrX 330191 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=4.5494;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.485;QD=21.74;ReadPosRankSum=1.697;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2229,249,0 chrX 330372 . T A 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.647;QD=23.99;ReadPosRankSum=1.627;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2408,240,0 chrX 330470 . C G 2284 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2317,249,0 chrX 330557 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2493,264,0 chrX 330767 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=26.32;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3921,400,0 chrX 331030 . C G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=19.01;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3936,423,0 chrX 331031 . T A 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=3.773;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=0;MQRankSum=1.259;QD=19.81;ReadPosRankSum=1.681;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4061,421,0 chrX 331044 . T G 3616.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=17.38;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3616,384,0 chrX 331050 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=16.86;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3491,369,0 chrX 331064 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7744;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=17.80;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3436,355,0 chrX 331109 . A C 4076.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.69;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4076,444,0 chrX 331412 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3782,405,0 chrX 331639 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4075,421,0 chrX 331811 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=3.110;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=21.39;ReadPosRankSum=1.653;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:3851,429,0 chrX 331865 . G C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.95;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3907,414,0 chrX 331934 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3698,396,0 chrX 332541 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.39;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3322,343,0 chrX 332595 . A C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.97;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3335,369,0 chrX 332597 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.16;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3567,361,0 chrX 332621 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=168;Dels=0.00;FS=2.576;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.192;QD=20.21;ReadPosRankSum=2.791;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3395,363,0 chrX 332665 . A T 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.5824;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.476;QD=22.51;ReadPosRankSum=1.667;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3624,390,0 chrX 333075 . A G 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=280;Dels=0.00;FS=2.511;HaplotypeScore=17.9732;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.500;QD=20.84;ReadPosRankSum=2.946;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,276:280:99:5835,636,0 chrX 333136 . C T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=22.7856;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.96;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5120,529,0 chrX 333412 . A G 5207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=227;Dels=0.00;FS=3.209;HaplotypeScore=21.6672;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.639;QD=22.94;ReadPosRankSum=1.655;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5207,558,0 chrX 334125 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3601,367,0 chrX 334204 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.34;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3021,327,0 chrX 334264 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.71;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3633,384,0 chrX 334291 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.047;QD=23.83;ReadPosRankSum=1.709;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3527,387,0 chrX 334681 . A G 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.9106;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.775;QD=22.91;ReadPosRankSum=1.715;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4582,490,0 chrX 334858 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.4740;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.26;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3605,376,0 chrX 335148 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.37;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3797,385,0 chrX 336383 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6811;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.14;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4123,427,0 chrX 336512 . C T 5531.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.6025;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.09;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5531,577,0 chrX 336551 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.29;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4654,490,0 chrX 336583 . C G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.37;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3398,366,0 chrX 336725 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.4530;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.43;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3908,409,0 chrX 336755 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.88;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3807,388,0 chrX 336944 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.48;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3893,420,0 chrX 337050 . T A 3018 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.22;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3051,312,0 chrX 337087 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3290,342,0 chrX 337133 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3886,414,0 chrX 337222 . A C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.808;QD=20.90;ReadPosRankSum=1.600;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2290,252,0 chrX 337263 . A C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.170;QD=23.32;ReadPosRankSum=1.701;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2622,276,0 chrX 337345 . A C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=106;Dels=0.00;FS=5.848;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.819;QD=23.39;ReadPosRankSum=2.934;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2512,267,0 chrX 337436 . A T 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.938;QD=22.41;ReadPosRankSum=1.660;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2184,240,0 chrX 337468 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.33;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2713,291,0 chrX 337551 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4834;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-2.409;QD=23.20;ReadPosRankSum=2.409;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4199,456,0 chrX 337579 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.98;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4090,424,0 chrX 337630 . C A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.39;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5240,547,0 chrX 337727 . A T 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.8627;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.016;QD=23.80;ReadPosRankSum=1.716;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5235,541,0 chrX 338993 . T C 6286.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=325;Dels=0.00;FS=19.139;HaplotypeScore=17.4423;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=12;MQRankSum=-2.580;QD=19.34;ReadPosRankSum=3.713;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:13,309:325:99:6286,699,0 chrX 339013 . A C 6926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=328;Dels=0.00;FS=2.846;HaplotypeScore=12.8573;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.693;QD=21.12;ReadPosRankSum=2.275;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:2,322:328:99:6926,751,0 chrX 339050 . T C 6362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=298;Dels=0.00;FS=9.479;HaplotypeScore=26.4869;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.199;QD=21.35;ReadPosRankSum=2.943;SB=-3.777e+03 GT:AD:DP:GQ:PL 1/1:3,294:298:99:6362,688,0 chrX 339346 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9612;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.61;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2929,312,0 chrX 339426 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=23.45;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2683,288,0 chrX 339429 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=0.015;QD=21.94;ReadPosRankSum=1.702;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2556,279,0 chrX 339446 . T A 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-0.196;QD=21.00;ReadPosRankSum=1.672;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2448,264,0 chrX 339451 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=22.52;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2623,270,0 chrX 339493 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.73;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2597,270,0 chrX 339512 . A T 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.704;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.199;QD=19.43;ReadPosRankSum=1.675;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2403,252,0 chrX 339657 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.78;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3039,312,0 chrX 339669 . C G 2427 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.89;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2460,276,0 chrX 339996 . T G 4166.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.4679;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.84;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4166,450,0 chrX 340014 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.96;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:4031,429,0 chrX 340095 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.07;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4713,478,0 chrX 340159 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=164;Dels=0.00;FS=3.201;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.861;QD=22.95;ReadPosRankSum=1.711;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3763,402,0 chrX 340465 . T G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=4.853;HaplotypeScore=7.4158;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.182;QD=20.98;ReadPosRankSum=1.700;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2299,252,0 chrX 340737 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.27;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2838,291,0 chrX 340947 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4328,445,0 chrX 341290 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=24.38;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4023,403,0 chrX 341296 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.31;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3726,396,0 chrX 341422 . C G 4943.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.2756;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.59;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4943,529,0 chrX 341566 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=3.021;HaplotypeScore=9.2162;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.210;QD=22.41;ReadPosRankSum=2.413;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4572,492,0 chrX 341586 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.45;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4054,438,0 chrX 341797 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.48;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4237,436,0 chrX 341843 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.132;HaplotypeScore=5.0929;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.928;QD=24.47;ReadPosRankSum=1.713;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4454,472,0 chrX 342013 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7084;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.62;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4204,447,0 chrX 342290 . T C 1637 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.21;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1670,180,0 chrX 342355 . T G 152.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.383;DP=74;Dels=0.00;FS=10.519;HaplotypeScore=116.9824;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.761;QD=2.06;ReadPosRankSum=-4.666;SB=-1.719e+01 GT:AD:DP:GQ:PL 1/1:59,15:74:8:184,8,0 chrX 342360 . T G 57.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DP=75;Dels=0.00;FS=15.884;HaplotypeScore=115.4050;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-1.044;QD=0.76;ReadPosRankSum=3.828;SB=-5.506e+02 GT:AD:DP:GQ:PL 0/1:17,58:75:63:87,0,63 chrX 342457 . C G 2719 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.24;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2752,294,0 chrX 342479 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.556;QD=23.33;ReadPosRankSum=1.699;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2506,267,0 chrX 342505 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.530;QD=22.29;ReadPosRankSum=2.257;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2596,276,0 chrX 342558 . A G 2517 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.88;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2550,270,0 chrX 342851 . C T 5233.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.28;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5233,538,0 chrX 342956 . A T 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=2.970;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.471;QD=22.60;ReadPosRankSum=2.409;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4068,427,0 chrX 343412 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=185;Dels=0.00;FS=12.262;HaplotypeScore=9.6847;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.064;QD=21.92;ReadPosRankSum=3.652;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:5,179:185:99:4055,444,0 chrX 343445 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;DP=198;Dels=0.00;FS=9.166;HaplotypeScore=21.4895;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.603;QD=22.38;ReadPosRankSum=2.933;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:3,192:198:99:4432,450,0 chrX 343823 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.527;QD=24.17;ReadPosRankSum=1.673;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2885,321,0 chrX 343856 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.79;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2864,303,0 chrX 343871 . A G 2529 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9322;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.38;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2562,273,0 chrX 343920 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=123;Dels=0.00;FS=2.929;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.099;QD=21.43;ReadPosRankSum=2.369;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2669,285,0 chrX 344394 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.37;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4114,421,0 chrX 344460 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.27;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3677,393,0 chrX 344732 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.44;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3838,408,0 chrX 344747 . A C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=184;Dels=0.00;FS=5.580;HaplotypeScore=7.9106;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.049;QD=21.52;ReadPosRankSum=2.929;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3959,423,0 chrX 345062 . A T 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=4.421;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.129;QD=25.05;ReadPosRankSum=1.598;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3883,397,0 chrX 345146 . C G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3634,402,0 chrX 345365 . C T 5182.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5182,526,0 chrX 345831 . T A 1302 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=24.57;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1335,147,0 chrX 346488 . T C 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.131;QD=21.81;ReadPosRankSum=1.697;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2192,240,0 chrX 346495 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0941;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.84;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2248,240,0 chrX 346643 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.89;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3192,322,0 chrX 346735 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.74;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2655,273,0 chrX 346858 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=136;Dels=0.00;FS=5.463;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.724;QD=25.06;ReadPosRankSum=2.918;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:3408,366,0 chrX 347852 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.72;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4597,492,0 chrX 347951 . T A 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=172;Dels=0.00;FS=9.821;HaplotypeScore=14.3081;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.512;QD=24.94;ReadPosRankSum=2.935;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:4289,439,0 chrX 348200 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.242;QD=25.05;ReadPosRankSum=0.945;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4984,494,0 chrX 348292 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.091;HaplotypeScore=10.1986;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.949;QD=25.25;ReadPosRankSum=1.713;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4470,474,0 chrX 348584 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.08;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3218,345,0 chrX 348652 . A G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.047;QD=19.85;ReadPosRankSum=2.417;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3010,324,0 chrX 348689 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1839;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.29;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2468,255,0 chrX 348750 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=22.08;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1888,189,0 chrX 348753 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=20.62;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1786,183,0 chrX 348770 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.88;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2265,243,0 chrX 348957 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=24.44;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3568,367,0 chrX 348976 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.83;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3384,360,0 chrX 348978 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.99;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3540,361,0 chrX 349384 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.22;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3075,324,0 chrX 349396 . T A 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=6.467;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.211;QD=22.86;ReadPosRankSum=1.654;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3073,324,0 chrX 349640 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.36;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3558,378,0 chrX 349864 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.19;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4064,421,0 chrX 349943 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.6782;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.097;QD=22.57;ReadPosRankSum=1.714;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4334,463,0 chrX 350351 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.31;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3403,366,0 chrX 350420 . C G 2772 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2805,300,0 chrX 350651 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.72;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3016,315,0 chrX 350741 . T G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=7.4312;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.303;QD=23.94;ReadPosRankSum=1.666;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2618,279,0 chrX 350771 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.41;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3029,327,0 chrX 350948 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.18;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3000,333,0 chrX 351163 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2905,300,0 chrX 351707 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.115;QD=24.22;ReadPosRankSum=1.708;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3560,390,0 chrX 351731 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=142;Dels=0.00;FS=8.874;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.757;QD=23.59;ReadPosRankSum=2.414;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3350,354,0 chrX 352052 . C A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.10;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3880,411,0 chrX 352304 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=4.185;HaplotypeScore=5.7196;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.831;QD=23.32;ReadPosRankSum=1.712;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4058,447,0 chrX 352322 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.66;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3952,406,0 chrX 352608 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.71;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4111,427,0 chrX 352620 . G C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.64;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3508,372,0 chrX 353165 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.36;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2737,294,0 chrX 353330 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.88;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2072,231,0 chrX 353336 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.09;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2142,228,0 chrX 353471 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.35;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1831,189,0 chrX 353747 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=24.28;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2485,264,0 chrX 353754 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=25.50;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2685,273,0 chrX 353805 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.70;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2462,252,0 chrX 353826 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.53;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2123,228,0 chrX 353839 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=0.148;QD=20.05;ReadPosRankSum=1.699;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2138,228,0 chrX 353862 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=19.55;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2223,222,0 chrX 353900 . G C 1675 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=16.75;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1708,183,0 chrX 354233 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.55;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2832,300,0 chrX 354367 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.019;QD=21.40;ReadPosRankSum=1.693;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1938,210,0 chrX 354442 . A G 1873 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.53;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1906,204,0 chrX 354638 . G A 614.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.882;DP=34;Dels=0.00;FS=27.770;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;MQRankSum=1.336;QD=18.06;ReadPosRankSum=0.911;SB=-4.607e+01 GT:AD:DP:GQ:PL 1/1:3,31:34:21:647,21,0 chrX 354706 . T C 89.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DP=22;Dels=0.00;FS=8.239;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=2;MQRankSum=-1.799;QD=4.05;ReadPosRankSum=2.329;SB=-2.858e+00 GT:AD:DP:GQ:PL 0/1:3,19:22:13:119,0,13 chrX 355077 . T A 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=6;QD=5.40;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:6,4:10:9:86,9,0 chrX 355078 . A G 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=6;QD=5.40;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:6,4:10:9:86,9,0 chrX 355079 . T C 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=6;MQRankSum=0.720;QD=4.25;ReadPosRankSum=1.380;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:8,4:12:9:83,9,0 chrX 355087 . C A 131.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=5;QD=9.37;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:5,9:14:18:164,18,0 chrX 355089 . T C 106.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=8.16;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:4,9:13:18:139,18,0 chrX 355110 . G A 115.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=22;Dels=0.00;FS=22.788;HaplotypeScore=3.9810;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=2;MQRankSum=-0.063;QD=5.23;ReadPosRankSum=-0.063;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:4,18:22:35:145,0,35 chrX 355125 . C T 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=21;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=1;MQRankSum=-0.189;QD=5.91;ReadPosRankSum=-0.819;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:3,18:21:34:154,0,34 chrX 355127 . A G 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.945;QD=5.50;ReadPosRankSum=-0.945;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:2,18:20:33:140,0,33 chrX 355129 . C T 183.03 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.15;SB=-5.504e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:24:216,24,0 chrX 355137 . A C 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.189;QD=5.55;ReadPosRankSum=-2.331;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:2,18:20:35:141,0,35 chrX 355146 . A G 108.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.567;QD=5.40;ReadPosRankSum=-2.331;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:2,18:20:33:138,0,33 chrX 355147 . G A 108.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.441;QD=5.40;ReadPosRankSum=-2.331;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:2,18:20:31:138,0,31 chrX 355152 . T C 121.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.071;QD=6.05;ReadPosRankSum=-2.331;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:2,18:20:33:151,0,33 chrX 355961 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=153.4778;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=0.74;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:94:12:102,12,0 chrX 356479 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.5751;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.63;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4582,469,0 chrX 357352 . A G 7248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=321;Dels=0.00;FS=8.886;HaplotypeScore=33.2850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.411;QD=22.58;ReadPosRankSum=3.434;SB=-3.803e+03 GT:AD:DP:GQ:PL 1/1:4,316:321:99:7248,801,0 chrX 357835 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.87;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2220,243,0 chrX 357838 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.500;QD=22.52;ReadPosRankSum=2.352;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2308,249,0 chrX 358040 . G C 540 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=39.6182;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=9.00;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:63:573,63,0 chrX 358158 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.0095;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.51;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1259,132,0 chrX 358190 . T C 1107 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=17.57;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1140,123,0 chrX 358208 . C G 727 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=16.5091;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=11.73;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:84:760,84,0 chrX 358315 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=8.4432;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.46;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2386,246,0 chrX 358354 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.91;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2759,291,0 chrX 358391 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6098;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.94;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3025,321,0 chrX 358552 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.383;QD=23.30;ReadPosRankSum=1.672;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4007,438,0 chrX 358755 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3167,325,0 chrX 358813 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3053,327,0 chrX 358909 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.766;QD=21.88;ReadPosRankSum=1.699;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2330,258,0 chrX 358957 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.680;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.601;QD=24.49;ReadPosRankSum=1.661;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2458,264,0 chrX 359074 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3648,387,0 chrX 359251 . C T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.6635;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5381,571,0 chrX 359301 . T G 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.409;QD=24.25;ReadPosRankSum=1.496;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5360,561,0 chrX 359404 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=183;Dels=0.00;FS=9.776;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.206;QD=23.95;ReadPosRankSum=2.906;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4382,474,0 chrX 359445 . C T 5457.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.3699;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.62;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5457,565,0 chrX 359859 . G T 1306 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=14.04;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1339,147,0 chrX 360017 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.39;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2653,273,0 chrX 360052 . A C 2796 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.4470;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.11;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2829,303,0 chrX 360186 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=179;Dels=0.00;FS=2.336;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.535;QD=23.65;ReadPosRankSum=3.332;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:4,174:179:99:4233,453,0 chrX 360306 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.73;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4564,504,0 chrX 360317 . G A 5003.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=22.95;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5003,505,0 chrX 360333 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.097;QD=21.05;ReadPosRankSum=1.177;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4904,508,0 chrX 360588 . G A 8676.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=29.2869;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.37;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,338:342:99:8676,889,0 chrX 360746 . T C 7334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=353;Dels=0.00;FS=14.809;HaplotypeScore=13.0120;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.252;QD=20.78;ReadPosRankSum=2.963;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:3,347:353:99:7334,775,0 chrX 361124 . A G 5471.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.89;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5471,609,0 chrX 361340 . G C 5103.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.0416;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.28;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5103,544,0 chrX 361362 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.8512;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=1.095;QD=21.48;ReadPosRankSum=1.717;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5027,540,0 chrX 361485 . T C 7023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=345;Dels=0.00;FS=2.545;HaplotypeScore=20.7821;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.208;QD=20.36;ReadPosRankSum=2.974;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:3,341:345:99:7023,757,0 chrX 361518 . T C 6977.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;DP=361;Dels=0.00;FS=2.567;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.723;QD=19.33;ReadPosRankSum=2.941;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:3,356:361:99:6977,751,0 chrX 361532 . C T 7287.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.41;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,356:357:99:7287,763,0 chrX 361557 . C T 6515.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=15.1408;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.62;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:6515,685,0 chrX 361967 . T C 6394.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=10.5676;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.67;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6394,711,0 chrX 362118 . A G 6122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=249;Dels=0.00;FS=3.191;HaplotypeScore=20.1646;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.606;QD=24.59;ReadPosRankSum=1.718;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:6122,649,0 chrX 362153 . C T 6022.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.58;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6022,625,0 chrX 362196 . A G 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;DP=254;Dels=0.00;FS=14.008;HaplotypeScore=22.2029;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.314;QD=18.78;ReadPosRankSum=2.972;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:4769,485,0 chrX 362249 . C G 4650.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:4650,525,0 chrX 362316 . A G 5775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.833;QD=21.71;ReadPosRankSum=1.693;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5775,633,0 chrX 362838 . C G 5552.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.04;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,235:241:99:5552,618,0 chrX 362886 . T C 6874.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6874,742,0 chrX 363087 . G A 6786.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.40;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6786,732,0 chrX 363678 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=3.032;HaplotypeScore=10.3876;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.058;QD=23.17;ReadPosRankSum=2.381;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4171,459,0 chrX 363723 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.83;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3241,348,0 chrX 363726 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.81;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3288,340,0 chrX 363767 . A G 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=3.131;HaplotypeScore=14.2215;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.902;QD=18.73;ReadPosRankSum=1.661;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2787,309,0 chrX 364028 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.619;QD=23.21;ReadPosRankSum=1.701;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2632,285,0 chrX 364146 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.23;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3780,393,0 chrX 364186 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.49;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3429,360,0 chrX 364397 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.69;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3495,358,0 chrX 364407 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=6.965;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.806;QD=21.31;ReadPosRankSum=2.368;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3251,348,0 chrX 364569 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=6.920;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.005;QD=22.51;ReadPosRankSum=2.383;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3331,369,0 chrX 364721 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.32;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4523,472,0 chrX 364761 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.78;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3866,411,0 chrX 364938 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=195;Dels=0.00;FS=3.392;HaplotypeScore=11.6235;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.748;QD=23.35;ReadPosRankSum=1.696;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,190:195:99:4553,489,0 chrX 365022 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.30;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4749,516,0 chrX 365255 . C T 4821.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.60;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4821,499,0 chrX 365807 . G C 2090 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2123,228,0 chrX 366123 . C T 5376.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.77;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5376,562,0 chrX 366400 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.112;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.544;QD=20.71;ReadPosRankSum=1.692;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3625,387,0 chrX 366482 . A C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=164;Dels=0.00;FS=7.146;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.557;QD=13.70;ReadPosRankSum=2.419;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,159:164:99:2279,243,0 chrX 366492 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.705;DP=168;Dels=0.00;FS=11.097;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.277;QD=13.31;ReadPosRankSum=3.733;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:5,163:168:99:2269,243,0 chrX 366671 . C A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.35;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3687,379,0 chrX 366673 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=2.972;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-1.536;QD=21.33;ReadPosRankSum=2.405;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3540,381,0 chrX 366855 . A G 4132.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;DP=204;Dels=0.00;FS=1.544;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=13;MQRankSum=2.326;QD=20.25;ReadPosRankSum=4.458;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:13,186:204:99:4132,459,0 chrX 366915 . G A 2709 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=7;QD=15.48;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2742,279,0 chrX 366927 . C T 2156 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=4;QD=12.99;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2189,225,0 chrX 366948 . G A 1290 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=9;QD=8.78;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1323,138,0 chrX 366966 . C T 756 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.8173;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=13;QD=5.60;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:84:789,84,0 chrX 367017 . T C 3554.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=186;Dels=0.00;FS=6.147;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=11;MQRankSum=-0.741;QD=19.11;ReadPosRankSum=2.407;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3554,384,0 chrX 367200 . G A 3118 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=6;QD=18.56;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3151,327,0 chrX 367212 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=3;QD=18.35;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3431,355,0 chrX 367284 . C T 5095.01 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=6;QD=21.77;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5095,526,0 chrX 367390 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5766;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.041;QD=18.71;ReadPosRankSum=1.670;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3213,354,0 chrX 367399 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.399;DP=175;Dels=0.00;FS=18.600;HaplotypeScore=3.5928;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=2.636;QD=19.37;ReadPosRankSum=2.071;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:6,169:175:99:3389,360,0 chrX 367417 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.99;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3578,390,0 chrX 367566 . G T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0874;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.09;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4115,424,0 chrX 367594 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9733;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.65;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3722,388,0 chrX 368795 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3401,352,0 chrX 369324 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.6782;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.43;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2671,282,0 chrX 369426 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.938;QD=24.15;ReadPosRankSum=1.669;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2689,291,0 chrX 369507 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=5.449;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-2.219;QD=24.98;ReadPosRankSum=2.891;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3447,366,0 chrX 369900 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.105;QD=24.03;ReadPosRankSum=2.412;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3133,333,0 chrX 370407 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=137;Dels=0.00;FS=5.889;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.652;QD=23.89;ReadPosRankSum=2.904;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:3273,357,0 chrX 370550 . G T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.64;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3897,406,0 chrX 371571 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3026,312,0 chrX 371619 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.859;QD=22.66;ReadPosRankSum=1.703;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2729,291,0 chrX 372444 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.82;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3822,394,0 chrX 372476 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.642;QD=23.86;ReadPosRankSum=1.709;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3651,390,0 chrX 372585 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3728,399,0 chrX 372699 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3215,345,0 chrX 373143 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1325,147,0 chrX 373251 . T C 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=82;Dels=0.00;FS=2.552;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.222;QD=23.80;ReadPosRankSum=2.914;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1985,216,0 chrX 373527 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.00;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2793,297,0 chrX 373775 . G C 2515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.46;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2548,279,0 chrX 374196 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.8538;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.85;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1861,198,0 chrX 374244 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=23.99;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2456,246,0 chrX 374306 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=18.74;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1495,162,0 chrX 374317 . C A 1261 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=18.54;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1294,132,0 chrX 374343 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=21.36;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1635,171,0 chrX 374407 . G A 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;DP=109;Dels=0.00;FS=11.307;HaplotypeScore=14.1629;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=1;MQRankSum=2.310;QD=18.82;ReadPosRankSum=2.983;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:6,103:109:99:2084,128,0 chrX 374408 . G C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.715;DP=107;Dels=0.00;FS=11.274;HaplotypeScore=14.1629;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=1;MQRankSum=2.116;QD=17.85;ReadPosRankSum=3.115;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:6,101:107:99:1943,125,0 chrX 374592 . G T 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=127;Dels=0.00;FS=6.126;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=1;MQRankSum=2.560;QD=23.14;ReadPosRankSum=2.512;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2972,263,0 chrX 374607 . T C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.390;QD=22.10;ReadPosRankSum=1.701;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2530,270,0 chrX 374624 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=18.94;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1738,189,0 chrX 374664 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=14.59;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1215,126,0 chrX 374698 . C T 1327 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=13.14;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1360,150,0 chrX 374699 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=13.66;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1426,150,0 chrX 374928 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=25.54;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2025,210,0 chrX 375069 . G C 2697 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.87;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2730,297,0 chrX 375100 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=25.65;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2803,283,0 chrX 375290 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.01;FS=3.481;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.567;QD=20.60;ReadPosRankSum=1.700;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2258,243,0 chrX 375298 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.94;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2294,234,0 chrX 375392 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.07;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2079,219,0 chrX 375438 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.35;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2156,228,0 chrX 375921 . T G 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.129;QD=19.44;ReadPosRankSum=2.341;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:96:908,96,0 chrX 375929 . G A 888 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.50;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:921,99,0 chrX 375981 . T C 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.678;QD=21.71;ReadPosRankSum=1.682;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1531,168,0 chrX 376048 . T A 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.890;QD=26.62;ReadPosRankSum=1.685;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2003,204,0 chrX 376071 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.94;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1729,177,0 chrX 376279 . A T 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=2.808;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.444;QD=20.98;ReadPosRankSum=2.373;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1376,150,0 chrX 376316 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.70;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1009,105,0 chrX 376379 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1673,180,0 chrX 377108 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.91;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3412,363,0 chrX 377543 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.03;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1660,174,0 chrX 377632 . T A 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.355;QD=26.18;ReadPosRankSum=1.698;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2677,273,0 chrX 377731 . T G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=2.593;HaplotypeScore=12.0833;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.047;QD=21.92;ReadPosRankSum=2.393;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2904,321,0 chrX 377783 . G T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.46;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3590,376,0 chrX 377800 . A T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.09;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3371,346,0 chrX 377905 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0966;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.836;QD=22.77;ReadPosRankSum=1.684;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3324,360,0 chrX 378005 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=146;Dels=0.00;FS=8.635;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=-1.732;QD=23.75;ReadPosRankSum=3.315;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3468,372,0 chrX 378111 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=24.21;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2188,228,0 chrX 378131 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=20.61;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1599,168,0 chrX 378171 . A G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-1.586;QD=16.35;ReadPosRankSum=1.659;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1586,171,0 chrX 378185 . T G 1579 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=16.28;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1612,171,0 chrX 378189 . G C 1503 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=15.18;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1536,171,0 chrX 378194 . A G 1486 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.659;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=-0.264;QD=15.16;ReadPosRankSum=2.400;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1519,162,0 chrX 378204 . T G 1564 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.516;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=1.417;QD=15.80;ReadPosRankSum=1.697;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1597,171,0 chrX 378208 . A G 1556 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=15.72;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1589,171,0 chrX 378211 . A T 1575 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;MQRankSum=1.561;QD=15.59;ReadPosRankSum=1.629;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1608,174,0 chrX 378217 . T A 1691 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=4.565;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;MQRankSum=-1.396;QD=16.42;ReadPosRankSum=1.698;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1724,174,0 chrX 378252 . T A 1496 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=16.62;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1529,162,0 chrX 378266 . T A 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=3.745;HaplotypeScore=7.5036;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.885;QD=17.91;ReadPosRankSum=1.694;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1645,174,0 chrX 378337 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=78.7157;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=21.89;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:89:99:1981,204,0 chrX 378557 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.58;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3146,336,0 chrX 378567 . T A 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.527;QD=24.63;ReadPosRankSum=2.376;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3276,339,0 chrX 378608 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.68;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4120,424,0 chrX 378869 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.36;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:3610,381,0 chrX 378873 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.44;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3452,355,0 chrX 379268 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4016,426,0 chrX 379586 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.584;QD=23.15;ReadPosRankSum=1.690;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3797,405,0 chrX 380280 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.96;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1955,210,0 chrX 380369 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.69;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1825,183,0 chrX 380370 . T C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.181;QD=18.07;ReadPosRankSum=2.820;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1750,183,0 chrX 380394 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=14.59;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1769,177,0 chrX 380408 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6777;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=11.02;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:1465,162,0 chrX 380423 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=12.28;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1974,219,0 chrX 380706 . T C 9135.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=401;Dels=0.00;FS=9.094;HaplotypeScore=16.8570;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.076;QD=22.78;ReadPosRankSum=3.431;SB=-5.404e+03 GT:AD:DP:GQ:PL 1/1:4,394:401:99:9135,970,0 chrX 380729 . A G 8784.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=19.8105;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.80;SB=-5.067e+03 GT:AD:DP:GQ:PL 1/1:0,399:403:99:8784,972,0 chrX 380852 . A G 7528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=354;Dels=0.00;FS=2.936;HaplotypeScore=19.5963;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.669;QD=21.27;ReadPosRankSum=2.401;SB=-3.862e+03 GT:AD:DP:GQ:PL 1/1:2,352:354:99:7528,828,0 chrX 380992 . T C 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=249;Dels=0.00;FS=11.816;HaplotypeScore=19.2804;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.302;QD=21.22;ReadPosRankSum=2.430;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5283,570,0 chrX 381023 . A G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.065;DP=201;Dels=0.00;FS=4.659;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.395;QD=20.90;ReadPosRankSum=4.165;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:6,195:201:99:4201,462,0 chrX 381896 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=182;Dels=0.00;FS=2.715;HaplotypeScore=11.9534;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.790;QD=23.50;ReadPosRankSum=2.355;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4277,465,0 chrX 382079 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=218;Dels=0.00;FS=3.030;HaplotypeScore=14.9579;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.186;QD=19.62;ReadPosRankSum=2.404;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4278,471,0 chrX 382565 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.175;QD=22.34;ReadPosRankSum=1.692;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3910,432,0 chrX 382599 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=6.969;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.552;QD=21.89;ReadPosRankSum=2.398;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4159,441,0 chrX 383417 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1663,189,0 chrX 384523 . A C 3686.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.63;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3686,393,0 chrX 384853 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.63;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3665,387,0 chrX 384932 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.98;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3588,381,0 chrX 384940 . G T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.27;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3638,379,0 chrX 384973 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.73;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3694,387,0 chrX 385072 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.887;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.704;QD=25.08;ReadPosRankSum=2.418;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3912,414,0 chrX 385186 . T A 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.350;QD=25.56;ReadPosRankSum=1.687;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3936,403,0 chrX 385354 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2954;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.58;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3607,384,0 chrX 385373 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2451;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.29;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3703,393,0 chrX 385498 . G A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9007;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.54;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4835,502,0 chrX 385636 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9458;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.23;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4645,484,0 chrX 385727 . G C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.6060;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.43;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4715,505,0 chrX 385903 . A T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.91;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3826,400,0 chrX 385921 . A T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.46;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3684,382,0 chrX 385990 . G T 2659 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.62;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2692,279,0 chrX 385991 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.82;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2695,279,0 chrX 386167 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.089;QD=21.26;ReadPosRankSum=2.399;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2095,225,0 chrX 386286 . A C 1064 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.28;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1097,117,0 chrX 386296 . A T 902 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.98;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:935,96,0 chrX 386362 . A G 589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=3.188;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.624;QD=23.56;ReadPosRankSum=1.595;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:66:622,66,0 chrX 386494 . G T 1266 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.82;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1299,135,0 chrX 387183 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1962,210,0 chrX 387413 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=3.478;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.697;QD=25.54;ReadPosRankSum=1.697;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2561,273,0 chrX 387637 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.3107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3103,316,0 chrX 387767 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3884,400,0 chrX 387842 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.564;QD=25.76;ReadPosRankSum=1.712;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4534,484,0 chrX 388199 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.7558;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.11;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2991,307,0 chrX 388253 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=61.7571;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=17.85;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1568,168,0 chrX 388388 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.2741;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.05;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2727,291,0 chrX 388820 . A C 2617 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.83;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2650,288,0 chrX 388825 . T C 2660 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.85;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2693,285,0 chrX 388844 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.45;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2651,285,0 chrX 389003 . A C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=3.941;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.398;QD=22.23;ReadPosRankSum=1.641;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2589,279,0 chrX 389114 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=2.951;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.656;QD=24.82;ReadPosRankSum=2.419;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:4070,438,0 chrX 389243 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.25;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3189,328,0 chrX 389413 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.21;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3365,348,0 chrX 389732 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.83;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2955,324,0 chrX 389780 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3559;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.27;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3062,313,0 chrX 390043 . A G 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=120;Dels=0.00;FS=5.866;HaplotypeScore=3.6158;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.398;QD=13.56;ReadPosRankSum=2.772;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:1660,206,0 chrX 390044 . G A 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2191;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.440;QD=13.67;ReadPosRankSum=1.439;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1660,206,0 chrX 390777 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.263;QD=23.75;ReadPosRankSum=1.688;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3776,405,0 chrX 390902 . G C 2847 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2880,303,0 chrX 391110 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.309;QD=23.70;ReadPosRankSum=1.701;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2687,294,0 chrX 391247 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7017;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.144;QD=24.41;ReadPosRankSum=1.443;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4150,444,0 chrX 391657 . T C 6089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.839;DP=297;Dels=0.00;FS=19.814;HaplotypeScore=12.1944;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.892;QD=20.50;ReadPosRankSum=2.816;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:4,290:297:99:6089,658,0 chrX 391693 . T C 6717.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=21.3359;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.73;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,320:324:99:6717,724,0 chrX 391817 . A G 6802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=279;Dels=0.00;FS=4.281;HaplotypeScore=17.6114;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.289;QD=24.38;ReadPosRankSum=1.682;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,275:279:99:6802,736,0 chrX 392321 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5060;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.77;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2837,286,0 chrX 392346 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8620;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.83;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3698,390,0 chrX 392787 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3298,354,0 chrX 393073 . G T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4143,424,0 chrX 393288 . T C 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=200;Dels=0.00;FS=6.086;HaplotypeScore=10.1667;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.497;QD=23.36;ReadPosRankSum=2.934;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,195:200:99:4671,516,0 chrX 393423 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3580,402,0 chrX 393501 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1572,171,0 chrX 393564 . G C 1404 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1437,156,0 chrX 393918 . T C 2248 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.294;QD=25.55;ReadPosRankSum=2.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2281,240,0 chrX 394236 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=179;Dels=0.00;FS=5.218;HaplotypeScore=19.3340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.988;QD=20.86;ReadPosRankSum=3.400;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:4,172:179:99:3734,402,0 chrX 394341 . T C 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=204;Dels=0.00;FS=2.779;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.301;QD=23.79;ReadPosRankSum=2.401;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,199:204:99:4853,525,0 chrX 395805 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1815,186,0 chrX 396093 . G T 2731 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2764,306,0 chrX 396819 . A T 1903 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.62;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1936,198,0 chrX 397072 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.30;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3155,345,0 chrX 397093 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.129;QD=22.87;ReadPosRankSum=1.703;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2869,309,0 chrX 397775 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3280,357,0 chrX 398997 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.303;QD=23.66;ReadPosRankSum=1.635;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3407,363,0 chrX 399363 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.35;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3185,339,0 chrX 399390 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.15;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3205,331,0 chrX 399979 . A C 7582.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=22.0058;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.48;SB=-4.334e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:7582,823,0 chrX 400207 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.370;DP=180;Dels=0.00;FS=7.128;HaplotypeScore=549.0446;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=-0.644;QD=21.75;ReadPosRankSum=4.070;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:7,173:180:99:3915,378,0 chrX 400226 . G A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DP=159;Dels=0.00;FS=256.819;HaplotypeScore=271.4132;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=0;MQRankSum=-1.136;QD=0.25;ReadPosRankSum=-6.772;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:126,33:159:70:70,0,573 chrX 400246 . A G 3315.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.687;DP=370;Dels=0.00;FS=37.853;HaplotypeScore=56.9218;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=-1.142;QD=8.96;ReadPosRankSum=3.759;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:26,344:370:25:3315,25,0 chrX 400249 . G A 2897.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.896;DP=375;Dels=0.00;FS=211.594;HaplotypeScore=57.1544;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=1.384;QD=7.73;ReadPosRankSum=4.548;SB=-4.990e+02 GT:AD:DP:GQ:PL 0/1:117,257:375:99:2927,0,346 chrX 400253 . G A 2774.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.623;DP=379;Dels=0.00;FS=198.491;HaplotypeScore=82.2230;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=1.887;QD=7.32;ReadPosRankSum=4.342;SB=-8.640e+02 GT:AD:DP:GQ:PL 0/1:121,258:379:99:2804,0,332 chrX 400260 . T A 3210.07 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.505;DP=366;Dels=0.00;FS=48.037;HaplotypeScore=183.1933;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=-0.441;QD=8.77;ReadPosRankSum=2.238;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:25,341:366:21:3243,21,0 chrX 400262 . G A 3444.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=240.8288;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=9.41;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:3444,413,0 chrX 400263 . A G 2612.05 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.105;DP=366;Dels=0.00;FS=48.037;HaplotypeScore=237.9236;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=1.445;QD=7.14;ReadPosRankSum=1.911;SB=-3.559e+03 GT:AD:DP:GQ:PL 1/1:25,341:366:22:2645,22,0 chrX 400270 . G A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;DP=393;Dels=0.00;FS=84.010;HaplotypeScore=245.9476;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=1.932;QD=0.03;ReadPosRankSum=-1.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:316,77:393:40:40,0,3215 chrX 400271 . G A 3152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.274;DP=393;Dels=0.00;FS=23.646;HaplotypeScore=221.0675;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=0.818;QD=8.02;ReadPosRankSum=-2.373;SB=-3.600e+03 GT:AD:DP:GQ:PL 0/1:62,331:393:99:3182,0,151 chrX 400285 . A G 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.792;DP=401;Dels=0.00;FS=233.536;HaplotypeScore=195.8460;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=1.377;QD=0.31;ReadPosRankSum=1.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:283,118:401:99:153,0,2887 chrX 400289 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.706;DP=403;Dels=0.00;FS=25.141;HaplotypeScore=153.4243;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=0;MQRankSum=0.363;QD=0.04;ReadPosRankSum=3.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:341,61:403:47:47,0,2802 chrX 400303 . A G 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.889;DP=369;Dels=0.00;FS=85.693;HaplotypeScore=129.9501;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=1.047;QD=0.34;ReadPosRankSum=2.980;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:250,119:369:99:154,0,2276 chrX 400307 . G A 2250.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;DP=353;Dels=0.00;FS=83.877;HaplotypeScore=84.7018;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=1.659;QD=6.37;ReadPosRankSum=-2.072;SB=-1.856e+03 GT:AD:DP:GQ:PL 0/1:123,229:353:99:2280,0,196 chrX 400321 . G A 934.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.594;DP=204;Dels=0.00;FS=191.532;HaplotypeScore=65.3941;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=1.316;QD=4.58;ReadPosRankSum=-4.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,62:204:99:964,0,333 chrX 400323 . A T 963.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.508;DP=184;Dels=0.00;FS=137.684;HaplotypeScore=61.6987;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=0;MQRankSum=-1.667;QD=5.23;ReadPosRankSum=-7.598;SB=-7.470e+02 GT:AD:DP:GQ:PL 0/1:81,103:184:45:993,0,45 chrX 400325 . A G 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DP=176;Dels=0.00;FS=21.991;HaplotypeScore=57.5271;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=0;MQRankSum=-0.298;QD=0.27;ReadPosRankSum=-2.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,14:176:78:78,0,591 chrX 400335 . G A 87.51 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=85.0527;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=1.20;SB=-2.025e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:12:120,12,0 chrX 400388 . C G 1755 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=14.62;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1788,189,0 chrX 400497 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=21.58;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3496,375,0 chrX 400578 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=23.93;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3024,327,0 chrX 400739 . T A 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.4218;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.108;QD=23.00;ReadPosRankSum=1.715;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4806,525,0 chrX 400808 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=2.788;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.963;QD=24.44;ReadPosRankSum=2.398;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4693,502,0 chrX 401648 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.826;QD=24.24;ReadPosRankSum=1.687;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3733,393,0 chrX 402396 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4072,429,0 chrX 402983 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.209;QD=23.76;ReadPosRankSum=1.696;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4585,513,0 chrX 403403 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.019;DP=116;Dels=0.00;FS=17.636;HaplotypeScore=12.5126;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.732;QD=20.16;ReadPosRankSum=3.155;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:4,112:116:99:2372,258,0 chrX 403967 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.50;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3120,333,0 chrX 404560 . A T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5781;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.58;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3607,373,0 chrX 404625 . C G 3608.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3608,393,0 chrX 404816 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.203;QD=23.20;ReadPosRankSum=1.684;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3387,360,0 chrX 405244 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.08;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2503,270,0 chrX 405265 . A T 2132 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6200;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.04;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2165,237,0 chrX 405306 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.59;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2203,225,0 chrX 405389 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.67;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1983,216,0 chrX 405572 . G C 2571 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0589;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.16;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2604,282,0 chrX 405884 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2191,237,0 chrX 405995 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.040;QD=23.75;ReadPosRankSum=1.705;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3121,333,0 chrX 406673 . A G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=204;Dels=0.00;FS=9.156;HaplotypeScore=15.8537;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.457;QD=22.29;ReadPosRankSum=3.417;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:4,199:204:99:4548,483,0 chrX 406781 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4321,459,0 chrX 406848 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=4.021;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.732;QD=23.76;ReadPosRankSum=1.667;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3802,402,0 chrX 406945 . A C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.32;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3251,354,0 chrX 407030 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.58;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3376,357,0 chrX 407443 . A T 4637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=4.252;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.742;QD=24.53;ReadPosRankSum=1.714;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4637,487,0 chrX 407535 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.6247;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.21;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4235,430,0 chrX 407617 . C T 6074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.3032;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.703;QD=25.10;ReadPosRankSum=1.403;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:6074,625,0 chrX 408145 . T C 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=218;Dels=0.00;FS=7.069;HaplotypeScore=12.8548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=22.95;ReadPosRankSum=0.904;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:5004,532,0 chrX 408211 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4160,436,0 chrX 409193 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.81;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1538,162,0 chrX 409312 . C T 1399 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1432,153,0 chrX 409338 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1356,141,0 chrX 409479 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.47;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2631,270,0 chrX 409825 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.327;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.732;QD=22.73;ReadPosRankSum=1.708;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3260,345,0 chrX 409993 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.36;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2860,306,0 chrX 410060 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.502;DP=120;Dels=0.00;FS=6.820;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.466;QD=21.99;ReadPosRankSum=1.917;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2672,297,0 chrX 410082 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.283;QD=20.52;ReadPosRankSum=1.701;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2290,249,0 chrX 410110 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=19.34;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2257,240,0 chrX 410131 . A C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;MQRankSum=-0.433;QD=19.16;ReadPosRankSum=1.701;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2179,231,0 chrX 410140 . G T 2016 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=17.38;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2049,222,0 chrX 410143 . G C 2050 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.52;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2083,234,0 chrX 410189 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0054;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.72;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3226,339,0 chrX 410366 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.088;QD=20.41;ReadPosRankSum=1.673;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2462,270,0 chrX 410379 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.64;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2370,255,0 chrX 410391 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.259;QD=18.02;ReadPosRankSum=1.650;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2340,255,0 chrX 410405 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.82;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2649,273,0 chrX 410563 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.75;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3391,352,0 chrX 410951 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.13;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3613,384,0 chrX 410980 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.07;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3310,357,0 chrX 410992 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.522;QD=22.51;ReadPosRankSum=1.637;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3287,348,0 chrX 414104 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1759,183,0 chrX 414241 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3869,426,0 chrX 415069 . A C 1479 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=68.6221;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.00;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1512,162,0 chrX 415079 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=15.19;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1461,156,0 chrX 415097 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=16.89;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1773,192,0 chrX 415231 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.748;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.650;QD=25.04;ReadPosRankSum=1.705;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3238,357,0 chrX 415474 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.26;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4051,429,0 chrX 415501 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.23;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4137,421,0 chrX 415541 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.92;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3638,373,0 chrX 416075 . G T 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=0.346;QD=25.20;ReadPosRankSum=-0.133;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3276,339,0 chrX 416209 . G C 3038 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=22.18;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3071,330,0 chrX 416379 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.111;QD=24.81;ReadPosRankSum=1.708;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3622,387,0 chrX 416411 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=134;Dels=0.00;FS=6.319;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.807;QD=23.68;ReadPosRankSum=2.358;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3206,342,0 chrX 416446 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.042;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.321;QD=24.63;ReadPosRankSum=2.413;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3325,363,0 chrX 416657 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.21;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2599,279,0 chrX 416872 . G A 336 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:369,39,0 chrX 416908 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:752,78,0 chrX 417033 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.62;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1261,129,0 chrX 417327 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.54;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1756,180,0 chrX 417330 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.39;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1744,186,0 chrX 417428 . A T 1668 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=26.48;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1701,171,0 chrX 417470 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1542,159,0 chrX 417543 . G T 1912 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.51;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1945,198,0 chrX 417732 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.35;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2809,291,0 chrX 417803 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3350,348,0 chrX 417877 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.069;QD=23.93;ReadPosRankSum=1.708;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3398,363,0 chrX 418404 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3883,420,0 chrX 418708 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=22.98;ReadPosRankSum=1.681;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3158,330,0 chrX 419079 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.31;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3763,399,0 chrX 419227 . T A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3713,385,0 chrX 419397 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3716,385,0 chrX 419759 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=10.4313;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.35;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1678,177,0 chrX 419761 . G C 1514 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=9.4366;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.81;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1547,168,0 chrX 419940 . A T 3215 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.93;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3248,339,0 chrX 419981 . T A 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.113;QD=26.61;ReadPosRankSum=1.640;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:4018,426,0 chrX 420791 . A T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.6502;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.05;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5028,540,0 chrX 421043 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3378,360,0 chrX 421583 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.58;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3796,405,0 chrX 421637 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.09;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3517,381,0 chrX 421902 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.82;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2718,285,0 chrX 421930 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=26.02;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2999,306,0 chrX 421977 . C A 2815 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.89;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2848,300,0 chrX 421994 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.18;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2884,309,0 chrX 422126 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.01;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3180,327,0 chrX 422219 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.49;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2010,219,0 chrX 422529 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.994;HaplotypeScore=10.3898;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.714;QD=22.27;ReadPosRankSum=2.324;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2661,291,0 chrX 422597 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.86;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2793,300,0 chrX 422683 . A G 2717 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.26;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2750,297,0 chrX 422897 . T G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.873;QD=18.76;ReadPosRankSum=0.235;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2509,267,0 chrX 424353 . A G 2595 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.95;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2628,279,0 chrX 424406 . A T 3018 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.34;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3051,315,0 chrX 424555 . T G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.177;QD=23.97;ReadPosRankSum=-0.244;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3812,408,0 chrX 424721 . G T 2549 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4413;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=24.28;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2582,270,0 chrX 424833 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.66;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1851,201,0 chrX 424869 . T C 1353 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=19.90;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1386,150,0 chrX 424928 . G T 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=56;Dels=0.02;FS=20.629;HaplotypeScore=11.6072;MLEAC=1;MLEAF=0.500;MQ=46.45;MQ0=0;MQRankSum=-0.431;QD=1.73;ReadPosRankSum=-1.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,23:55:99:127,0,247 chrX 424930 . A T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;DP=60;Dels=0.02;FS=23.078;HaplotypeScore=13.9733;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=0;MQRankSum=-1.265;QD=1.07;ReadPosRankSum=-1.160;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,18:59:94:94,0,343 chrX 425083 . A T 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=8.416;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.152;QD=24.75;ReadPosRankSum=1.621;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3127,327,0 chrX 425108 . C G 2670 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=20.08;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2703,282,0 chrX 425114 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.28;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2790,285,0 chrX 425129 . C G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.179;QD=17.99;ReadPosRankSum=1.613;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,144:149:99:2714,288,0 chrX 425504 . T G 5417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.6953;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.047;QD=24.29;ReadPosRankSum=1.670;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5417,585,0 chrX 425558 . T A 5701.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.79;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5701,583,0 chrX 425929 . C T 6207.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=20.9004;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.65;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6207,640,0 chrX 426287 . C A 5781.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=23.1017;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.22;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5781,598,0 chrX 426616 . G A 5386.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=23.94;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5386,544,0 chrX 426869 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=188;Dels=0.00;FS=9.388;HaplotypeScore=14.8573;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.524;QD=22.20;ReadPosRankSum=2.919;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:4174,453,0 chrX 427445 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2826,288,0 chrX 427737 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.838;QD=24.46;ReadPosRankSum=1.704;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3066,327,0 chrX 428015 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2493,255,0 chrX 428088 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=26.52;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2261,234,0 chrX 428258 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.24;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2809,297,0 chrX 428552 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.172;QD=22.85;ReadPosRankSum=-0.993;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3140,342,0 chrX 429124 . A G 4913.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4913,523,0 chrX 429437 . A C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3811,408,0 chrX 429703 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=173;Dels=0.00;FS=6.150;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.221;QD=23.92;ReadPosRankSum=2.377;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,168:173:99:4138,444,0 chrX 429926 . G A 5164.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.5019;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.83;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5164,535,0 chrX 430097 . T G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.219;QD=20.46;ReadPosRankSum=1.715;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4296,474,0 chrX 430103 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.93;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4438,445,0 chrX 430343 . G T 5982.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.92;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5982,640,0 chrX 430649 . G A 4968.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.9838;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.61;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4968,511,0 chrX 430727 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3333,366,0 chrX 431189 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.240;QD=23.01;ReadPosRankSum=1.682;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3208,348,0 chrX 431354 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=4.061;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.475;QD=24.53;ReadPosRankSum=1.706;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3311,354,0 chrX 431392 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9872;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.62;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3536,381,0 chrX 431409 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.078;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.492;QD=23.86;ReadPosRankSum=1.599;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3135,339,0 chrX 431531 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=146;Dels=0.00;FS=2.834;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.194;QD=22.14;ReadPosRankSum=2.399;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3266,345,0 chrX 431547 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=22.06;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3209,342,0 chrX 431554 . C G 2969 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=21.06;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3002,321,0 chrX 431570 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.30;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2844,303,0 chrX 431673 . C A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.35;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3336,348,0 chrX 431895 . T A 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=2.905;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.917;QD=23.53;ReadPosRankSum=2.369;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2904,297,0 chrX 432578 . A T 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;DP=104;Dels=0.00;FS=9.554;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.618;QD=21.34;ReadPosRankSum=2.775;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2252,237,0 chrX 433328 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1974,204,0 chrX 433368 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2264,237,0 chrX 433686 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.70;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3334,357,0 chrX 434034 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.8775;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.78;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3243,339,0 chrX 434060 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.02;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3522,358,0 chrX 434435 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3534,387,0 chrX 434839 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.68;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3267,339,0 chrX 434858 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.26;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3057,324,0 chrX 434887 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.40;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2699,282,0 chrX 435102 . T A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.50;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3290,360,0 chrX 435254 . A T 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=159;Dels=0.00;FS=2.999;HaplotypeScore=13.0651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.816;QD=24.53;ReadPosRankSum=2.388;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3900,406,0 chrX 435638 . T A 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.778;QD=24.30;ReadPosRankSum=1.707;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3354,351,0 chrX 435812 . A T 1373 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.81;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1406,147,0 chrX 436041 . T C 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=98;Dels=0.00;FS=5.888;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=2.207;QD=22.33;ReadPosRankSum=2.887;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2221,243,0 chrX 436111 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=27.24;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2158,216,0 chrX 436243 . C T 1434 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3787;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1467,144,0 chrX 436312 . A G 852 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=-1.564;QD=20.78;ReadPosRankSum=1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:96:885,96,0 chrX 436332 . T A 529 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=24.05;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:57:562,57,0 chrX 436468 . G C 55.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=11.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:88,9,0 chrX 436479 . G A 53.97 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=9.00;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:6:9:86,9,0 chrX 436489 . A T 102.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=12.78;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:135,15,0 chrX 436602 . T C 970 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;QD=25.53;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1003,108,0 chrX 436837 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.620;DP=173;Dels=0.00;FS=4.764;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.065;QD=23.63;ReadPosRankSum=3.701;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:4088,438,0 chrX 437259 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.89;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4306,457,0 chrX 437758 . C G 3759.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,155:162:99:3759,414,0 chrX 438505 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.51;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3714,393,0 chrX 438727 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.27;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3305,354,0 chrX 438766 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2313;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.48;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3598,375,0 chrX 438853 . G T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.72;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3318,351,0 chrX 439624 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.39;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3426,357,0 chrX 439651 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.40;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3561,364,0 chrX 440240 . A G 5701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=3.459;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.773;QD=25.23;ReadPosRankSum=1.701;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5701,604,0 chrX 440601 . G T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.33;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3470,369,0 chrX 440709 . C G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3593,373,0 chrX 440946 . C A 2924 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.57;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2957,315,0 chrX 443746 . G A 6352.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6352,655,0 chrX 445175 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2679,270,0 chrX 446085 . G C 2729 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=26.75;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2762,291,0 chrX 446576 . G A 4906.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4906,505,0 chrX 447917 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=4.405;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.580;QD=24.64;ReadPosRankSum=-0.514;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2275,228,0 chrX 448328 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8570;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3610,378,0 chrX 448448 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=170;Dels=0.00;FS=5.949;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.282;QD=22.61;ReadPosRankSum=2.946;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3844,411,0 chrX 448916 . G T 777 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=13.87;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:810,84,0 chrX 448922 . T C 770 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=14.00;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:803,84,0 chrX 448925 . C A 722 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=12.67;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:84:755,84,0 chrX 448936 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=15.00;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1008,108,0 chrX 449033 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.60;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1496,153,0 chrX 449256 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.199;QD=26.15;ReadPosRankSum=1.705;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3399,360,0 chrX 449403 . G A 5002.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.71;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5002,511,0 chrX 449418 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.18;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4025,435,0 chrX 450050 . C G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.77;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3757,405,0 chrX 450069 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=161;Dels=0.00;FS=7.469;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.837;QD=21.93;ReadPosRankSum=2.419;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3530,387,0 chrX 450386 . C A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.95;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4477,451,0 chrX 450387 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.85;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4480,451,0 chrX 450521 . C T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5346;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.39;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4534,469,0 chrX 450644 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.31;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3817,402,0 chrX 450783 . G T 2241 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.34;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2274,234,0 chrX 450888 . A G 2747 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.53;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2780,294,0 chrX 451295 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.98;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3332,372,0 chrX 451382 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3555,370,0 chrX 451436 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3498,378,0 chrX 451760 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3085,330,0 chrX 452144 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.98;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2671,276,0 chrX 452205 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.860;QD=24.37;ReadPosRankSum=1.638;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3582,390,0 chrX 452260 . C G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.84;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4124,438,0 chrX 452288 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.66;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4241,436,0 chrX 452579 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4673,493,0 chrX 452919 . T A 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=191;Dels=0.00;FS=2.990;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.189;QD=24.18;ReadPosRankSum=2.424;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4619,481,0 chrX 453005 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=200;Dels=0.00;FS=5.585;HaplotypeScore=16.0975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.382;QD=23.67;ReadPosRankSum=2.935;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4733,510,0 chrX 453151 . A T 5498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=225;Dels=0.00;FS=3.049;HaplotypeScore=19.0367;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.603;QD=24.44;ReadPosRankSum=1.639;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5498,568,0 chrX 453323 . A G 5144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.541;QD=23.49;ReadPosRankSum=1.684;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5144,550,0 chrX 453420 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.17;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3204,342,0 chrX 454055 . G A 2018.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.736;DP=527;Dels=0.00;FS=249.083;HaplotypeScore=25.7529;MLEAC=1;MLEAF=0.500;MQ=35.41;MQ0=58;MQRankSum=-8.564;QD=3.83;ReadPosRankSum=2.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:353,173:527:99:2048,0,6179 chrX 454274 . T G 344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.754;DP=455;Dels=0.00;FS=218.397;HaplotypeScore=39.0001;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=23;MQRankSum=-7.701;QD=0.76;ReadPosRankSum=0.582;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:347,106:455:99:374,0,6572 chrX 455051 . C A 5554.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.0231;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.04;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5554,577,0 chrX 455168 . T C 4901.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.3785;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.68;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4901,537,0 chrX 455247 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.210;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.183;QD=22.91;ReadPosRankSum=1.660;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3345,366,0 chrX 455260 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.82;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3235,331,0 chrX 455330 . T A 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=5.128;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.182;QD=22.70;ReadPosRankSum=1.671;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2621,279,0 chrX 455390 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=2.877;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.339;QD=25.34;ReadPosRankSum=2.411;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3251,336,0 chrX 455563 . T A 2712 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.33;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2745,279,0 chrX 455859 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.47;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3817,394,0 chrX 456071 . A T 328 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.743;QD=14.91;ReadPosRankSum=1.569;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:1,20:21:39:361,39,0 chrX 456110 . C T 401 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.05;SB=-8.500e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:434,45,0 chrX 456781 . T C 6118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=259;Dels=0.00;FS=2.766;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.728;QD=23.62;ReadPosRankSum=2.402;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:6118,664,0 chrX 456997 . T A 6560.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=17.4462;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-3.384e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6560,700,0 chrX 457744 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.83;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1561,156,0 chrX 458198 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.73;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3199,328,0 chrX 458269 . C G 3173 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3206,342,0 chrX 458564 . T C 2371 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.16;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2404,261,0 chrX 458980 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.87;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2893,306,0 chrX 459184 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.41;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3613,384,0 chrX 459216 . G C 3677.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.98;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3677,402,0 chrX 459433 . T G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=165;Dels=0.00;FS=6.827;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.277;QD=22.88;ReadPosRankSum=2.375;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3775,411,0 chrX 459776 . T C 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=45.9737;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.896;QD=12.89;ReadPosRankSum=2.382;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:2,71:74:99:987,108,0 chrX 459804 . T C 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.576;QD=16.87;ReadPosRankSum=2.405;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1872,204,0 chrX 460047 . A G 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=19.0670;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.168;QD=23.14;ReadPosRankSum=1.652;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:5994,640,0 chrX 460583 . A G 5212.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.1668;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.91;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5212,553,0 chrX 460723 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.31;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3520,372,0 chrX 460780 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=4.739;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.052;QD=21.31;ReadPosRankSum=1.655;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2910,318,0 chrX 460801 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.19;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2476,267,0 chrX 460988 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.52;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4057,432,0 chrX 461497 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.96;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3133,333,0 chrX 461507 . G C 2938 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.09;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2971,318,0 chrX 461695 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=95;Dels=0.00;FS=2.912;HaplotypeScore=13.9802;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.569;QD=17.99;ReadPosRankSum=2.397;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1742,192,0 chrX 462490 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=26.24;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5196,535,0 chrX 462583 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.680;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=0.266;QD=18.63;ReadPosRankSum=1.675;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3390,360,0 chrX 462586 . G C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=18.82;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3313,357,0 chrX 462605 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=-0.444;QD=16.88;ReadPosRankSum=1.690;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2801,303,0 chrX 462634 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;MQRankSum=-1.500;QD=13.53;ReadPosRankSum=1.709;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2076,225,0 chrX 462674 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.058;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;MQRankSum=-0.362;QD=15.06;ReadPosRankSum=1.713;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:2789,312,0 chrX 462687 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.4959;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-1.117;QD=14.50;ReadPosRankSum=1.714;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2890,315,0 chrX 462689 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.3198;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=13.81;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2739,306,0 chrX 462713 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=15.47;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3296,334,0 chrX 462930 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.11;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3129,324,0 chrX 463005 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.72;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3046,312,0 chrX 463222 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.3104;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.70;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2680,285,0 chrX 464252 . A G 2398 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.118;QD=20.85;ReadPosRankSum=2.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2431,261,0 chrX 464394 . G A 573 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=20.46;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,26:28:63:606,63,0 chrX 464565 . C A 2496 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=26.84;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2529,261,0 chrX 465021 . G A 6020.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.3544;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.61;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6020,634,0 chrX 465639 . C T 6641.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=21.3446;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.63;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6641,682,0 chrX 466331 . T A 1980 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2013,204,0 chrX 466454 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.85;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4174,433,0 chrX 466456 . A T 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=7.939;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.237;QD=24.69;ReadPosRankSum=1.691;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4148,433,0 chrX 466822 . T C 7752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=344;Dels=0.00;FS=13.966;HaplotypeScore=28.3058;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.814;QD=22.53;ReadPosRankSum=3.405;SB=-3.901e+03 GT:AD:DP:GQ:PL 1/1:4,337:344:99:7752,826,0 chrX 466873 . C T 9235.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=15.3535;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.62;SB=-5.157e+03 GT:AD:DP:GQ:PL 1/1:0,391:391:99:9235,964,0 chrX 467010 . C G 2734 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.30;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2767,303,0 chrX 467886 . T C 7123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=302;Dels=0.00;FS=9.383;HaplotypeScore=17.0227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.110;QD=23.59;ReadPosRankSum=2.923;SB=-3.876e+03 GT:AD:DP:GQ:PL 1/1:3,298:302:99:7123,783,0 chrX 468087 . C T 6954.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.5118;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.23;SB=-3.861e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6954,727,0 chrX 468122 . A G 6722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=284;Dels=0.00;FS=8.665;HaplotypeScore=18.2955;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.176;QD=23.67;ReadPosRankSum=3.369;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:4,278:284:99:6722,712,0 chrX 468193 . A G 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=29.9952;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.083;QD=20.53;ReadPosRankSum=2.405;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4598,507,0 chrX 468418 . C T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.27;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4980,537,0 chrX 468603 . A G 6919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=288;Dels=0.00;FS=4.087;HaplotypeScore=20.3481;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.503;QD=24.02;ReadPosRankSum=1.708;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6919,754,0 chrX 468648 . G A 6082.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6082,663,0 chrX 469453 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0121;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.27;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3676,379,0 chrX 469520 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.4289;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.19;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3502,375,0 chrX 469702 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.864;DP=183;Dels=0.00;FS=1.984;HaplotypeScore=28.6235;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.522;QD=20.15;ReadPosRankSum=1.039;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:5,176:183:99:3688,408,0 chrX 470299 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2571,258,0 chrX 471486 . T A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.3925;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.26;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3792,397,0 chrX 471532 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.74;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3418,346,0 chrX 471770 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.577;QD=24.71;ReadPosRankSum=1.709;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3632,396,0 chrX 472011 . A G 2454 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2487,267,0 chrX 472246 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5527;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=26.92;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2187,222,0 chrX 472296 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=27.13;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2800,288,0 chrX 472463 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=1;QD=3.90;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:10:9:71,9,0 chrX 484353 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1226;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.38;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3056,321,0 chrX 484372 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.47;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3167,336,0 chrX 484480 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0714;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4338,457,0 chrX 484566 . G C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0582;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.99;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3747,396,0 chrX 484576 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.90;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3872,388,0 chrX 484754 . T A 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.962;QD=23.73;ReadPosRankSum=1.687;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3631,379,0 chrX 484997 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=6.208;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.109;QD=22.95;ReadPosRankSum=2.390;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3810,408,0 chrX 485198 . G T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3411,357,0 chrX 485447 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3668,379,0 chrX 486009 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1810;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.60;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4224,447,0 chrX 486193 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0710;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.39;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3078,313,0 chrX 486292 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.02;FS=0.000;HaplotypeScore=13.4111;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.21;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3187,328,0 chrX 486407 . A C 2087 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=38.1636;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.44;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2120,225,0 chrX 486432 . T G 2549 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.60;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2582,273,0 chrX 486501 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=10.9529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.088;QD=24.31;ReadPosRankSum=1.705;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3193,342,0 chrX 486724 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=163;Dels=0.01;FS=6.849;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.927;QD=23.31;ReadPosRankSum=2.419;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3800,402,0 chrX 487279 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1614,171,0 chrX 487339 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2229,228,0 chrX 487575 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.76;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2602,264,0 chrX 487716 . T G 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.130;QD=25.22;ReadPosRankSum=2.423;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4741,499,0 chrX 487992 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.36;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4412,466,0 chrX 488113 . A C 4222.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4222,456,0 chrX 488152 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.88;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4165,459,0 chrX 488230 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=9.026;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.430;QD=21.28;ReadPosRankSum=2.422;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3831,426,0 chrX 488782 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.500;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=23.24;ReadPosRankSum=1.710;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3602,381,0 chrX 489013 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.12;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1794,183,0 chrX 489261 . G C 2388 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.96;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2421,270,0 chrX 489262 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.049;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.825;QD=22.64;ReadPosRankSum=2.354;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2388,267,0 chrX 489283 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=3.058;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.576;QD=22.93;ReadPosRankSum=2.369;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2143,231,0 chrX 489978 . C G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.87;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3819,408,0 chrX 489987 . T A 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.109;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.175;QD=21.98;ReadPosRankSum=1.674;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3934,415,0 chrX 490246 . G T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.54;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3908,400,0 chrX 490308 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.140;QD=24.78;ReadPosRankSum=1.709;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3667,393,0 chrX 490357 . A T 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.635;QD=22.92;ReadPosRankSum=1.708;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3278,354,0 chrX 490924 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3244,348,0 chrX 491340 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.69;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3520,366,0 chrX 491395 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.16;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3497,361,0 chrX 491666 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.03;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2987,301,0 chrX 491703 . C G 3042 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5432;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.37;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3075,327,0 chrX 491789 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.26;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2326,243,0 chrX 492295 . A T 786 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:819,87,0 chrX 492486 . A C 1350 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.47;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1383,147,0 chrX 492566 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8159;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=27.35;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3474,355,0 chrX 492678 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.000;QD=22.93;ReadPosRankSum=1.706;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3106,333,0 chrX 493119 . C T 4923.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.90;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4923,523,0 chrX 493239 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.0582;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.79;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4806,499,0 chrX 494352 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.376;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.032;QD=24.27;ReadPosRankSum=1.689;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3908,435,0 chrX 494994 . C G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.90;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3387,369,0 chrX 495112 . T A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.16;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3382,352,0 chrX 495458 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.88;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3633,373,0 chrX 495485 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=7.066;HaplotypeScore=7.3639;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.877;QD=24.72;ReadPosRankSum=2.399;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3634,390,0 chrX 495516 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.23;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3756,402,0 chrX 496029 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4808,508,0 chrX 497086 . T C 245 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.31;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:278,30,0 chrX 497321 . T C 411 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.729;QD=12.09;ReadPosRankSum=3.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,29:34:51:444,51,0 chrX 497589 . A G 5512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=228;Dels=0.00;FS=2.959;HaplotypeScore=8.7417;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.103;QD=24.18;ReadPosRankSum=2.352;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:5512,589,0 chrX 497615 . T C 5445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=230;Dels=0.00;FS=13.515;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.435;QD=23.67;ReadPosRankSum=3.270;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:5445,577,0 chrX 497765 . C T 5351.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.2207;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.12;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5351,559,0 chrX 497879 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.293;QD=25.60;ReadPosRankSum=1.715;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5324,565,0 chrX 497985 . G C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.6122;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.64;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4516,492,0 chrX 498149 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=5.478;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.095;QD=22.67;ReadPosRankSum=2.900;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3876,426,0 chrX 498362 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.37;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3273,337,0 chrX 498452 . G T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9192;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.42;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4543,460,0 chrX 498551 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.00;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3425,346,0 chrX 498791 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3499,358,0 chrX 499043 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.86;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4226,436,0 chrX 499118 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.30;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3545,361,0 chrX 499382 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3803,394,0 chrX 500159 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.46;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3678,385,0 chrX 500192 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=147;Dels=0.00;FS=6.061;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.368;QD=25.17;ReadPosRankSum=2.952;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3700,393,0 chrX 500362 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=7.6029;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=27.15;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3692,373,0 chrX 500414 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=133;Dels=0.00;FS=7.101;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.897;QD=23.96;ReadPosRankSum=2.376;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3220,339,0 chrX 500582 . T G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=4.046;HaplotypeScore=6.5771;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.653;QD=24.85;ReadPosRankSum=1.706;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3305,354,0 chrX 500836 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.9857;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.38;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3049,339,0 chrX 501153 . C A 1814 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.34;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1847,189,0 chrX 501169 . T C 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.183;QD=20.19;ReadPosRankSum=1.690;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1709,189,0 chrX 501283 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.39;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2648,267,0 chrX 501427 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.44;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2379,246,0 chrX 501448 . A C 2202 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.70;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2235,246,0 chrX 501565 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.17;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2198,225,0 chrX 501706 . T A 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.417;QD=25.77;ReadPosRankSum=1.697;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2584,270,0 chrX 501961 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.8025;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.37;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2907,294,0 chrX 502139 . G C 3021 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.42;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3054,321,0 chrX 502163 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.51;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3170,325,0 chrX 502192 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.08;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2964,301,0 chrX 502260 . G T 2666 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.39;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2699,279,0 chrX 502294 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.955;QD=23.00;ReadPosRankSum=1.700;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2494,264,0 chrX 502465 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.85;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2501,258,0 chrX 502471 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.12;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2391,246,0 chrX 502687 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.51;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2876,292,0 chrX 502696 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.52;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2926,312,0 chrX 502798 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.2894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.006;QD=24.54;ReadPosRankSum=1.699;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2634,282,0 chrX 502945 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.19;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3854,403,0 chrX 503332 . C G 2950 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2983,318,0 chrX 503392 . T A 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=4.437;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=22.54;ReadPosRankSum=1.621;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2851,297,0 chrX 503661 . T A 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.063;QD=25.06;ReadPosRankSum=1.712;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4411,460,0 chrX 503779 . A G 5754.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5754,616,0 chrX 503860 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.481;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.550;QD=22.73;ReadPosRankSum=1.635;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4864,537,0 chrX 503880 . G C 5234.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.46;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,221:233:99:5234,559,0 chrX 503940 . C T 6050.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.91;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6050,643,0 chrX 504074 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.02;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4036,415,0 chrX 504158 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=148;Dels=0.00;FS=8.139;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.316;QD=22.57;ReadPosRankSum=3.328;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:4,143:148:99:3340,357,0 chrX 504644 . T C 6020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=276;Dels=0.00;FS=9.171;HaplotypeScore=13.6981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.120;QD=21.81;ReadPosRankSum=2.423;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,273:276:99:6020,640,0 chrX 504709 . T C 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=4.927;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.396;QD=21.70;ReadPosRankSum=1.641;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4947,526,0 chrX 505150 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.5261;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.20;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4040,432,0 chrX 505156 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.5705;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.96;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4178,430,0 chrX 505297 . A T 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.000;QD=25.68;ReadPosRankSum=1.675;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4674,484,0 chrX 505396 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.26;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3833,408,0 chrX 505473 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.03;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3340,354,0 chrX 505510 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.18;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3433,349,0 chrX 505537 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.20;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3026,307,0 chrX 505548 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.2274;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.93;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3264,334,0 chrX 505598 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.341;QD=21.95;ReadPosRankSum=1.653;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2930,324,0 chrX 505992 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2347,243,0 chrX 506424 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3131,321,0 chrX 506512 . G C 2498 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.72;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2531,273,0 chrX 506526 . G C 2490 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.43;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2523,267,0 chrX 506574 . T C 2715 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.38;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2748,303,0 chrX 506707 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=25.90;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4326,465,0 chrX 506903 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.90;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2799,303,0 chrX 506909 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=20.68;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2804,294,0 chrX 506929 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.04;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2742,294,0 chrX 507183 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5343;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.611;QD=23.95;ReadPosRankSum=1.712;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4095,435,0 chrX 507303 . G T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.6687;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.32;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3891,400,0 chrX 507335 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.643;QD=24.45;ReadPosRankSum=1.710;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3790,405,0 chrX 507430 . C A 2600 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.30;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2633,264,0 chrX 507530 . G T 2565 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.37;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2598,273,0 chrX 507569 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.0081;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.63;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2585,264,0 chrX 507730 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=116;Dels=0.00;FS=13.762;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.026;QD=22.93;ReadPosRankSum=2.922;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2693,282,0 chrX 507744 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.25;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2681,288,0 chrX 508366 . C G 3729.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.0286;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.90;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3729,402,0 chrX 508514 . T A 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.710;QD=23.22;ReadPosRankSum=1.663;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4667,481,0 chrX 508525 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.15;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4452,451,0 chrX 508529 . A C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=199;Dels=0.00;FS=14.457;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.119;QD=20.45;ReadPosRankSum=3.328;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:4069,432,0 chrX 508627 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.5039;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.67;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4161,453,0 chrX 508682 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.50;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4140,444,0 chrX 508859 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3521,364,0 chrX 509110 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3698,408,0 chrX 509235 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3827,391,0 chrX 509679 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3712,382,0 chrX 509746 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.49;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4053,406,0 chrX 510183 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.24;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2263,234,0 chrX 510201 . A T 2148 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.60;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2181,225,0 chrX 510323 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.86;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3041,310,0 chrX 510389 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.91;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2484,255,0 chrX 510440 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.94;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3592,367,0 chrX 510548 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8124;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.30;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3441,352,0 chrX 510597 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=7.280;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.772;QD=23.54;ReadPosRankSum=2.331;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3413,375,0 chrX 510695 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.18;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3256,348,0 chrX 510812 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.79;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3595,367,0 chrX 510871 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.10;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3414,352,0 chrX 510914 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3371;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.07;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3467,372,0 chrX 511245 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.03;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2750,291,0 chrX 511262 . C G 2750 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.54;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2783,300,0 chrX 511432 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.96;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2915,300,0 chrX 511529 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.57;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2613,273,0 chrX 511654 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.60;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2936,312,0 chrX 511908 . G A 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.028;QD=18.81;ReadPosRankSum=1.341;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2384,255,0 chrX 511909 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=124;Dels=0.00;FS=2.590;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.025;QD=19.19;ReadPosRankSum=2.877;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2412,258,0 chrX 511944 . G T 2238 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.98;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2271,225,0 chrX 511949 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.03;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2164,222,0 chrX 512491 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4524;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.70;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2621,270,0 chrX 513764 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.36;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3224,345,0 chrX 513807 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4237;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.785;QD=24.60;ReadPosRankSum=1.657;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3444,369,0 chrX 513858 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=2.937;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.478;QD=22.45;ReadPosRankSum=2.378;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3884,414,0 chrX 513874 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.35;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4112,433,0 chrX 514236 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.33;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3343,357,0 chrX 514320 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3504,372,0 chrX 514465 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.47;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:4185,433,0 chrX 514783 . A T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3629,364,0 chrX 514978 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3038,324,0 chrX 515263 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.67;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3215,322,0 chrX 515338 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.6605;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.80;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3575,381,0 chrX 515351 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=169;Dels=0.00;FS=10.165;HaplotypeScore=11.0256;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.708;QD=22.33;ReadPosRankSum=2.959;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3774,396,0 chrX 515450 . C T 4986.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.52;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4986,514,0 chrX 515495 . C T 5665.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=27.11;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5665,571,0 chrX 516190 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.9560;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.98;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2814,303,0 chrX 516370 . T G 2093 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2126,225,0 chrX 516436 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.51;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2686,282,0 chrX 516605 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.44;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3151,333,0 chrX 516694 . A G 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=182;Dels=0.00;FS=6.141;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.155;QD=21.63;ReadPosRankSum=1.964;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3936,414,0 chrX 516695 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.495;QD=21.14;ReadPosRankSum=1.713;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3911,411,0 chrX 516707 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.31;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4194,433,0 chrX 516831 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.55;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3496,363,0 chrX 516847 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.84;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3320,354,0 chrX 516908 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.55;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3585,372,0 chrX 516972 . G T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.00;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4150,430,0 chrX 517094 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.300;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.363;QD=23.21;ReadPosRankSum=1.676;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2957,318,0 chrX 517244 . G C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.15;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4082,450,0 chrX 517494 . T G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.430;HaplotypeScore=7.6163;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.627;QD=22.44;ReadPosRankSum=1.708;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3220,342,0 chrX 517501 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5619;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.24;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3169,324,0 chrX 517771 . A C 2791 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.70;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2824,303,0 chrX 517926 . G C 2307 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.02;FS=0.000;HaplotypeScore=10.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.54;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2340,249,0 chrX 518283 . A T 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.011;QD=19.28;ReadPosRankSum=1.709;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2945,303,0 chrX 518442 . G C 2317 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=22.72;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2350,249,0 chrX 518451 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=21.41;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2217,240,0 chrX 518465 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-0.936;QD=21.14;ReadPosRankSum=1.653;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1872,201,0 chrX 518469 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=21.28;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1948,210,0 chrX 518494 . G C 1964 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.89;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1997,210,0 chrX 518528 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.39;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2258,228,0 chrX 518612 . G A 451 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.61;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:51:484,51,0 chrX 518647 . G T 606 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.44;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:69:639,69,0 chrX 518721 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.82;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1591,165,0 chrX 518970 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.61;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3322,357,0 chrX 519319 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=16.3073;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.09;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1434,150,0 chrX 519377 . G A 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.445;QD=23.40;ReadPosRankSum=-0.742;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1671,171,0 chrX 519608 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3152,339,0 chrX 520808 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.5973;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.06;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:5350,568,0 chrX 520853 . C T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.92;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5311,567,0 chrX 520985 . A T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=24.3831;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.92;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5645,586,0 chrX 521282 . G A 5841.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.5275;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.73;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5841,601,0 chrX 521645 . T G 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=215;Dels=0.00;FS=9.594;HaplotypeScore=13.2977;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.451;QD=24.35;ReadPosRankSum=2.939;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:5236,559,0 chrX 522284 . T C 6572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=277;Dels=0.00;FS=2.974;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.479;QD=23.73;ReadPosRankSum=2.423;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:2,272:277:99:6572,709,0 chrX 522481 . C G 6850.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.47;SB=-4.257e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:6850,721,0 chrX 522484 . C T 6971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=326;Dels=0.00;FS=3.037;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.396;QD=21.38;ReadPosRankSum=0.481;SB=-4.488e+03 GT:AD:DP:GQ:PL 1/1:1,323:326:99:6971,694,0 chrX 522503 . G A 6341.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.33;SB=-4.192e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:6341,685,0 chrX 522608 . T C 6915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=29.5727;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.228;QD=22.38;ReadPosRankSum=1.687;SB=-3.583e+03 GT:AD:DP:GQ:PL 1/1:1,308:309:99:6915,756,0 chrX 522848 . T C 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=267;Dels=0.00;FS=8.791;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.540;QD=19.09;ReadPosRankSum=2.394;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:5098,561,0 chrX 523142 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.41;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4727,507,0 chrX 523349 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9087;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.98;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4597,472,0 chrX 523373 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.77;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4607,484,0 chrX 523867 . T G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=100;Dels=0.00;FS=6.990;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.465;QD=23.05;ReadPosRankSum=2.376;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2338,249,0 chrX 524113 . T G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.91;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3512,375,0 chrX 524213 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.384;QD=24.12;ReadPosRankSum=1.650;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4077,438,0 chrX 524341 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=22.61;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2610,270,0 chrX 524370 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=18.12;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2081,231,0 chrX 524384 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=5.229;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;MQRankSum=-1.354;QD=16.90;ReadPosRankSum=1.638;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1892,201,0 chrX 524404 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=17.37;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2083,216,0 chrX 524412 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=15.43;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1900,210,0 chrX 524435 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.68;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2181,225,0 chrX 524483 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.3541;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.43;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2007,204,0 chrX 524618 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=26.81;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2124,216,0 chrX 524703 . C A 926 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:959,99,0 chrX 525584 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.232;QD=24.33;ReadPosRankSum=1.625;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2393,261,0 chrX 525745 . C A 245 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=29.3536;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=5.33;SB=-8.302e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:30:278,30,0 chrX 525795 . A T 339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;DP=40;Dels=0.00;FS=10.831;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.257;QD=8.48;ReadPosRankSum=1.232;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:28:372,28,0 chrX 525992 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.15;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3245,342,0 chrX 526016 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.36;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3481,358,0 chrX 526036 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.40;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3450,369,0 chrX 526305 . A G 5150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=208;Dels=0.00;FS=11.613;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.419;QD=24.76;ReadPosRankSum=2.402;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:5150,579,0 chrX 526730 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.50;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1797,186,0 chrX 526954 . A T 2143 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.35;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2176,228,0 chrX 527002 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.25;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2785,285,0 chrX 528639 . A T 6225.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.51;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6225,646,0 chrX 530019 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3036,324,0 chrX 531791 . A C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=161;Dels=0.00;FS=5.241;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.606;QD=23.22;ReadPosRankSum=2.944;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3739,405,0 chrX 532027 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=130;Dels=0.00;FS=2.582;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.062;QD=24.87;ReadPosRankSum=2.946;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3268,351,0 chrX 532743 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.57;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3452,355,0 chrX 532916 . T A 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8088;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.413;QD=21.21;ReadPosRankSum=1.683;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3045,324,0 chrX 532931 . A G 2766 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.34;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2799,306,0 chrX 533833 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.93;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1592,168,0 chrX 534002 . G T 2766 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=25.15;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2799,288,0 chrX 534212 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5140;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.93;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4081,421,0 chrX 534224 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.61;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3998,432,0 chrX 534296 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.52;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4054,432,0 chrX 534756 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.081;QD=23.23;ReadPosRankSum=1.686;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3484,375,0 chrX 535430 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.297;QD=25.04;ReadPosRankSum=1.662;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4982,526,0 chrX 535622 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.499;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.995;QD=24.57;ReadPosRankSum=1.677;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4620,498,0 chrX 535682 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.3410;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.62;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4606,484,0 chrX 535766 . T C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.438;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.298;QD=25.02;ReadPosRankSum=1.570;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3236,348,0 chrX 535873 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.55;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2856,300,0 chrX 535930 . G C 2591 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2624,279,0 chrX 536229 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.948;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.835;QD=25.63;ReadPosRankSum=1.707;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3563,375,0 chrX 536262 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.16;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2974,312,0 chrX 536283 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.208;QD=19.95;ReadPosRankSum=1.704;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2547,273,0 chrX 536292 . C G 2232 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.08;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2265,246,0 chrX 536691 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.46;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2706,294,0 chrX 536874 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.92;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2784,300,0 chrX 536893 . G T 2559 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.14;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2592,276,0 chrX 537357 . C A 3118 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.15;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3151,322,0 chrX 537428 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.56;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3254,342,0 chrX 537465 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.89;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2734,297,0 chrX 537677 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.87;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2062,216,0 chrX 537808 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=1;QD=19.17;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1164,126,0 chrX 537810 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=1;QD=18.98;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1248,129,0 chrX 537860 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=1;QD=22.29;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1972,213,0 chrX 538035 . C A 2934 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=26.92;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2967,303,0 chrX 538049 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=25.66;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2650,270,0 chrX 538083 . T A 2009 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=23.36;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2042,210,0 chrX 538434 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=3.97;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrX 538523 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=25.00;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3058,339,0 chrX 538651 . C A 710 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=12.91;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:743,87,0 chrX 538652 . T C 728 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=13.48;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:761,87,0 chrX 538653 . T C 726 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-0.535;QD=12.96;ReadPosRankSum=1.669;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:87:759,87,0 chrX 538656 . T C 908 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.148;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=-1.678;QD=13.97;ReadPosRankSum=1.678;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:941,105,0 chrX 538984 . T G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.96;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3714,393,0 chrX 539053 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.57;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3371,357,0 chrX 539105 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=125;Dels=0.00;FS=2.713;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.033;QD=23.53;ReadPosRankSum=2.410;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2974,315,0 chrX 539146 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.928;QD=24.25;ReadPosRankSum=2.405;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2700,291,0 chrX 539272 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.718;QD=22.13;ReadPosRankSum=1.605;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1848,201,0 chrX 539275 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=23.39;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1881,192,0 chrX 539286 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.39;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1552,168,0 chrX 539486 . A T 701 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=26.8346;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=13.75;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:734,75,0 chrX 539524 . T G 414 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=7.14;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:48:447,48,0 chrX 539539 . T A 1104 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=12.84;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1137,114,0 chrX 539612 . T A 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=3.395;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.822;QD=21.07;ReadPosRankSum=1.673;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2519,267,0 chrX 539626 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=121;Dels=0.00;FS=9.134;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-2.727;QD=19.49;ReadPosRankSum=3.384;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:4,116:121:99:2391,258,0 chrX 539652 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=6.543;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.153;QD=19.34;ReadPosRankSum=2.362;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2199,234,0 chrX 539780 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=9.4734;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.21;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1632,168,0 chrX 540015 . C A 1824 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.49;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1857,201,0 chrX 540022 . C G 2101 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.34;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2134,225,0 chrX 540077 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.498;QD=21.61;ReadPosRankSum=2.407;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2540,279,0 chrX 540199 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.28;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3765,405,0 chrX 540433 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.984;QD=25.15;ReadPosRankSum=1.682;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3496,381,0 chrX 540591 . T A 2929 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2962,303,0 chrX 540639 . A G 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=4.122;HaplotypeScore=3.4252;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.196;QD=21.40;ReadPosRankSum=1.648;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2751,294,0 chrX 540663 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.231;QD=21.93;ReadPosRankSum=1.686;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3311,357,0 chrX 540773 . A T 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.771;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8404;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=1.645;QD=25.97;ReadPosRankSum=0.859;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3124,318,0 chrX 540782 . A G 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5743;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.414;QD=22.21;ReadPosRankSum=1.941;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2609,291,0 chrX 540790 . G C 2435 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.55;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2468,264,0 chrX 540805 . G T 2648 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=22.63;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2681,282,0 chrX 540929 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.862;DP=126;Dels=0.00;FS=2.456;HaplotypeScore=9.1600;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=2;MQRankSum=0.797;QD=17.41;ReadPosRankSum=0.504;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2227,213,0 chrX 540972 . A T 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=-1.237;QD=15.20;ReadPosRankSum=1.694;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1431,156,0 chrX 541000 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=19.43;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1568,162,0 chrX 541067 . C A 1135 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=24.15;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1168,120,0 chrX 541095 . T C 611 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=21.82;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:69:644,69,0 chrX 541613 . A T 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=1.624;QD=21.37;ReadPosRankSum=1.570;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1401,147,0 chrX 541712 . A T 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.610;QD=24.82;ReadPosRankSum=1.691;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2143,225,0 chrX 541816 . A T 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=5.663;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.718;QD=26.46;ReadPosRankSum=1.707;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3704,379,0 chrX 542113 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.29;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3610,384,0 chrX 542131 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.034;QD=22.20;ReadPosRankSum=1.576;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3441,355,0 chrX 542293 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.82;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4336,460,0 chrX 542308 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=7.325;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.923;QD=23.71;ReadPosRankSum=2.421;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4007,429,0 chrX 542620 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.28;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3741,376,0 chrX 542637 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2109;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.60;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3753,391,0 chrX 542771 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.35;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2638,270,0 chrX 543047 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=6.129;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.757;QD=22.34;ReadPosRankSum=2.874;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2356,252,0 chrX 543064 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.69;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2438,249,0 chrX 543075 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.10;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2396,264,0 chrX 543104 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.19;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2618,279,0 chrX 543140 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.77;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2948,301,0 chrX 543250 . T G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=3.013;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.841;QD=23.36;ReadPosRankSum=2.394;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3163,339,0 chrX 543266 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.26;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3194,345,0 chrX 543383 . T G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.594;QD=24.37;ReadPosRankSum=-0.569;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3436,349,0 chrX 543721 . A G 335 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=1;QD=6.20;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:39:368,39,0 chrX 543776 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=3.032;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-2.359;QD=20.53;ReadPosRankSum=2.389;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1696,177,0 chrX 543878 . T G 2356 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.49;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2389,261,0 chrX 543880 . G T 2311 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=20.45;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2344,258,0 chrX 544103 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.862;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.688;QD=25.05;ReadPosRankSum=1.661;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3683,396,0 chrX 544322 . C G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0573;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3622,387,0 chrX 544484 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.62;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4023,423,0 chrX 544523 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.662;HaplotypeScore=9.9214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.711;QD=24.28;ReadPosRankSum=1.669;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4007,432,0 chrX 544624 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.01;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3863,397,0 chrX 545038 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.042;QD=21.10;ReadPosRankSum=1.711;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3524,378,0 chrX 545053 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.67;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3219,348,0 chrX 545209 . T C 3161 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.36;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3194,345,0 chrX 545233 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=20.89;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3822,391,0 chrX 545239 . C A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.08;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3607,381,0 chrX 545249 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.280;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.994;QD=18.78;ReadPosRankSum=1.675;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3456,366,0 chrX 545773 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.63;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4775,496,0 chrX 545817 . G C 3947.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=20.0310;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.05;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3947,438,0 chrX 546078 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=3.031;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.363;QD=23.87;ReadPosRankSum=2.420;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3987,423,0 chrX 546103 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.74;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3834,405,0 chrX 546305 . T C 4750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=201;Dels=0.00;FS=5.956;HaplotypeScore=15.2871;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.935;QD=23.63;ReadPosRankSum=2.965;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4750,508,0 chrX 546368 . T A 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.404;QD=23.43;ReadPosRankSum=2.377;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4732,490,0 chrX 546527 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.87;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3423,357,0 chrX 546530 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=169;Dels=0.00;FS=2.745;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.651;QD=19.13;ReadPosRankSum=2.406;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3265,354,0 chrX 546704 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.32;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3747,396,0 chrX 546734 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=2.910;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.817;QD=21.11;ReadPosRankSum=2.412;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2799,300,0 chrX 546746 . T A 2631 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.72;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2664,279,0 chrX 546803 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=6.218;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.934;QD=18.83;ReadPosRankSum=2.406;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2161,237,0 chrX 546863 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.45;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3015,312,0 chrX 546884 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=7.080;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.779;QD=20.81;ReadPosRankSum=2.305;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3217,336,0 chrX 547067 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.16;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4398,454,0 chrX 547082 . C G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.50;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3806,408,0 chrX 547200 . C T 5887.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.53;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5887,598,0 chrX 547229 . C T 5294.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.5944;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.53;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5294,544,0 chrX 547598 . C A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.9775;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.39;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4053,450,0 chrX 547730 . C T 6379.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.4628;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.80;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6379,646,0 chrX 547820 . C A 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=3.602;HaplotypeScore=11.1815;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.136;QD=24.76;ReadPosRankSum=-0.883;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:5051,523,0 chrX 548012 . G A 6081.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.23;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6081,619,0 chrX 548174 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=5.355;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.396;QD=20.19;ReadPosRankSum=1.712;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3573,384,0 chrX 548247 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.76;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2209,234,0 chrX 548463 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.49;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1842,192,0 chrX 548488 . T A 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.063;QD=22.51;ReadPosRankSum=1.690;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1901,204,0 chrX 548667 . A T 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=4.452;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.331;QD=20.28;ReadPosRankSum=1.653;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2690,267,0 chrX 548670 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=4.671;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.040;QD=18.67;ReadPosRankSum=1.678;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2479,270,0 chrX 549010 . T G 8291.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=13.5763;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.24;SB=-4.448e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:8291,883,0 chrX 549542 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.44;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4937,540,0 chrX 550837 . T C 5912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.0535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.043;QD=24.23;ReadPosRankSum=1.704;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5912,648,0 chrX 551502 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=13.3433;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.975;QD=24.61;ReadPosRankSum=2.351;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3691,387,0 chrX 552134 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.46;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5113,523,0 chrX 552149 . G A 5212.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.0582;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.13;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5212,535,0 chrX 552241 . A G 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=201;Dels=0.00;FS=3.789;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.611;QD=23.67;ReadPosRankSum=0.302;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4758,505,0 chrX 552529 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=6.269;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-2.066;QD=23.88;ReadPosRankSum=2.404;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3844,423,0 chrX 552584 . A T 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.211;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-1.643;QD=23.82;ReadPosRankSum=1.710;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3692,376,0 chrX 552605 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.54;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3366,357,0 chrX 552640 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.20;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3340,343,0 chrX 553441 . T C 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=68;Dels=0.00;FS=3.490;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.646;QD=20.22;ReadPosRankSum=1.681;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1408,150,0 chrX 554464 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=24.76;ReadPosRankSum=1.704;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3054,327,0 chrX 554517 . A T 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.259;QD=24.91;ReadPosRankSum=1.706;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3338,345,0 chrX 554801 . C A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3254,328,0 chrX 554957 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.60;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2665,270,0 chrX 554999 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2257,240,0 chrX 555138 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8656;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.323;QD=21.41;ReadPosRankSum=1.703;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2581,279,0 chrX 555162 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.6618;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.49;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2874,300,0 chrX 556366 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=195;Dels=0.00;FS=10.532;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.487;QD=23.12;ReadPosRankSum=2.943;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4508,498,0 chrX 557590 . A G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.742;QD=22.86;ReadPosRankSum=1.687;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1816,195,0 chrX 557799 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.89;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3115,336,0 chrX 558226 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=10.2400;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.443;QD=23.79;ReadPosRankSum=2.403;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3759,405,0 chrX 558314 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.577;QD=24.04;ReadPosRankSum=1.713;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4255,453,0 chrX 560037 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.80;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4593,490,0 chrX 560267 . A T 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.336;QD=22.26;ReadPosRankSum=1.663;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4474,466,0 chrX 560603 . T G 2845 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2878,303,0 chrX 561055 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.369;QD=23.37;ReadPosRankSum=1.676;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2931,315,0 chrX 563290 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.95;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3343,343,0 chrX 568363 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4350,451,0 chrX 568783 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=12.39;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1210,129,0 chrX 568787 . T C 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.037;QD=12.53;ReadPosRankSum=2.400;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1286,144,0 chrX 568805 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.55;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1671,177,0 chrX 568992 . A T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=24.42;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3638,376,0 chrX 570422 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.0816;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.71;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5291,568,0 chrX 570512 . G A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6290;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.01;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5102,529,0 chrX 570648 . C G 1917 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.76;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1950,207,0 chrX 570721 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-1.496;QD=20.69;ReadPosRankSum=1.693;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1854,204,0 chrX 570822 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.92;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2244,258,0 chrX 571066 . A G 6596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=288;Dels=0.00;FS=5.085;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.720;QD=22.90;ReadPosRankSum=1.684;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6596,700,0 chrX 571276 . T C 5408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=278;Dels=0.00;FS=4.678;HaplotypeScore=27.1961;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.506;QD=19.45;ReadPosRankSum=1.720;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:1,275:278:99:5408,580,0 chrX 571651 . G A 7345.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.98;SB=-3.948e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:7345,748,0 chrX 571854 . T C 5445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=251;Dels=0.00;FS=3.785;HaplotypeScore=11.3635;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.021;QD=21.69;ReadPosRankSum=1.718;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5445,586,0 chrX 571909 . G A 5690.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.01;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5690,589,0 chrX 572041 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.05;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4218,436,0 chrX 572117 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=184;Dels=0.00;FS=2.579;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.612;QD=22.39;ReadPosRankSum=2.918;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4120,441,0 chrX 572450 . G C 4723.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.86;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4723,516,0 chrX 572675 . A G 7720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=348;Dels=0.00;FS=9.220;HaplotypeScore=25.2772;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.225;QD=22.18;ReadPosRankSum=2.968;SB=-4.434e+03 GT:AD:DP:GQ:PL 1/1:3,345:348:99:7720,846,0 chrX 572786 . G T 7800.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.97;SB=-4.494e+03 GT:AD:DP:GQ:PL 1/1:0,353:355:99:7800,847,0 chrX 572936 . C T 7074.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.19;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:7074,730,0 chrX 573325 . C T 5513.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.14;SB=-3.660e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:5513,577,0 chrX 573331 . T C 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=288;Dels=0.00;FS=12.831;HaplotypeScore=9.6356;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.597;QD=19.05;ReadPosRankSum=3.357;SB=-3.564e+03 GT:AD:DP:GQ:PL 1/1:4,280:288:99:5485,603,0 chrX 573386 . A G 6705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=331;Dels=0.00;FS=6.055;HaplotypeScore=23.4821;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.619;QD=20.26;ReadPosRankSum=2.906;SB=-4.222e+03 GT:AD:DP:GQ:PL 1/1:3,326:331:99:6705,721,0 chrX 573581 . T C 6916.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.3145;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.88;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6916,736,0 chrX 573598 . G A 5895.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.7268;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.67;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5895,610,0 chrX 574034 . C G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.02;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3611,390,0 chrX 574091 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=130;Dels=0.00;FS=12.092;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.907;QD=20.68;ReadPosRankSum=2.884;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2722,300,0 chrX 574115 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.28;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2930,309,0 chrX 574232 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.82;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3623,370,0 chrX 574262 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=134;Dels=0.00;FS=9.152;HaplotypeScore=8.2473;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.342;QD=23.93;ReadPosRankSum=2.337;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:3239,339,0 chrX 574310 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.08;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4138,430,0 chrX 574412 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0225;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.695;QD=24.88;ReadPosRankSum=-0.917;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4653,464,0 chrX 574799 . T C 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.351;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.001;QD=24.33;ReadPosRankSum=1.697;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4890,523,0 chrX 575549 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.53;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2608,285,0 chrX 575557 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.50;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2456,255,0 chrX 575801 . T C 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=198;Dels=0.00;FS=5.669;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.812;QD=23.44;ReadPosRankSum=2.883;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4641,498,0 chrX 575876 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9511;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.61;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4604,478,0 chrX 576155 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.90;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3106,336,0 chrX 576182 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2864,291,0 chrX 576323 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=165;Dels=0.00;FS=3.424;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.976;QD=23.05;ReadPosRankSum=-1.711;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3804,376,0 chrX 577541 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4381,471,0 chrX 578056 . G A 6860.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=23.57;SB=-4.012e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6860,709,0 chrX 578278 . G A 5774.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=21.4405;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.57;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5774,598,0 chrX 578407 . G C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4306,468,0 chrX 578455 . T C 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=230;Dels=0.00;FS=7.134;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.370;QD=23.06;ReadPosRankSum=2.310;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5303,562,0 chrX 578943 . C T 5151.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.2540;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.53;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5151,532,0 chrX 579112 . A G 6517.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.44;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6517,697,0 chrX 579361 . A T 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=3.023;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.825;QD=23.51;ReadPosRankSum=2.425;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4726,487,0 chrX 579663 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.74;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4762,493,0 chrX 579671 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.07;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4723,484,0 chrX 580104 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.93;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3290,357,0 chrX 580119 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.29;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3227,348,0 chrX 580312 . T C 967 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.96;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1000,108,0 chrX 580576 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.97;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4111,447,0 chrX 580662 . T G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.769;DP=226;Dels=0.00;FS=18.761;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.122;QD=21.92;ReadPosRankSum=3.804;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:5,220:226:99:4953,529,0 chrX 580666 . T A 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=228;Dels=0.00;FS=7.540;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.113;QD=22.42;ReadPosRankSum=2.363;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5112,526,0 chrX 580696 . G A 5079.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.18;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5079,520,0 chrX 581086 . T C 2684 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.33;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2717,300,0 chrX 581101 . A G 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=2.857;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.594;QD=21.62;ReadPosRankSum=2.407;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2498,270,0 chrX 581428 . A C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=152;Dels=0.00;FS=3.277;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.342;QD=23.34;ReadPosRankSum=1.709;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3548,384,0 chrX 581494 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3425,369,0 chrX 581638 . G C 669 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.34;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:59:75:702,75,0 chrX 581739 . A G 350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.249;QD=8.14;ReadPosRankSum=1.652;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:42:383,42,0 chrX 581821 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.60;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3084,318,0 chrX 581835 . T C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=128.7461;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.563;QD=21.85;ReadPosRankSum=2.380;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3135,336,0 chrX 581933 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.84;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3731,388,0 chrX 582140 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=173;Dels=0.00;FS=6.309;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.025;QD=22.33;ReadPosRankSum=2.391;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,167:173:99:3863,411,0 chrX 582214 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.95;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4192,447,0 chrX 582415 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=100.6852;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=22.78;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2721,279,0 chrX 582462 . A T 1652 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=70.3773;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.56;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1685,183,0 chrX 582558 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2466,255,0 chrX 582788 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.66;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4799,514,0 chrX 582845 . G T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3705,393,0 chrX 583178 . A C 2302 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.9537;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.98;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2335,249,0 chrX 583223 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.38;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2271,234,0 chrX 583236 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.24;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2279,231,0 chrX 583447 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=4.087;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.394;QD=25.42;ReadPosRankSum=0.507;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4195,433,0 chrX 583742 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3268,351,0 chrX 584125 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.34;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2741,279,0 chrX 584131 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.64;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2370,267,0 chrX 584209 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.56;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2710,276,0 chrX 584485 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.97;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4492,466,0 chrX 584584 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=202;Dels=0.00;FS=9.122;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.249;QD=19.78;ReadPosRankSum=2.425;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3995,444,0 chrX 584590 . C G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.24;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3964,423,0 chrX 584616 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.13;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3999,415,0 chrX 584641 . A G 3580.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.50;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3580,387,0 chrX 584668 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=217;Dels=0.00;FS=3.660;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.155;QD=17.52;ReadPosRankSum=1.155;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:3802,408,0 chrX 584922 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.3507;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.23;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3078,310,0 chrX 584992 . C T 2561 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=20.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2594,261,0 chrX 585612 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=185;Dels=0.00;FS=2.581;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-0.790;QD=19.04;ReadPosRankSum=2.383;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3522,378,0 chrX 585618 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=19.20;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3476,366,0 chrX 585641 . A G 2379 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.975;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9228;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-1.267;QD=14.33;ReadPosRankSum=3.906;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:6,160:166:99:2412,261,0 chrX 585642 . A G 2395 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=168;Dels=0.00;FS=2.534;HaplotypeScore=5.4319;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;MQRankSum=-0.109;QD=14.26;ReadPosRankSum=2.534;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:2428,264,0 chrX 585643 . A G 2408 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;DP=167;Dels=0.00;FS=8.459;HaplotypeScore=5.4319;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-0.289;QD=14.42;ReadPosRankSum=2.035;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:2441,264,0 chrX 585779 . A G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=83;Dels=0.00;FS=2.986;HaplotypeScore=2.2282;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=-0.787;QD=21.17;ReadPosRankSum=2.301;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1790,198,0 chrX 585794 . T C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=101;Dels=0.00;FS=11.488;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-1.051;QD=19.18;ReadPosRankSum=2.809;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:3,97:101:99:1970,213,0 chrX 585867 . T G 2644 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=22.99;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2677,288,0 chrX 585923 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.36;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2940,306,0 chrX 585937 . T G 2913 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0196;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.76;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2946,321,0 chrX 586163 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.241;QD=23.38;ReadPosRankSum=1.705;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3002,324,0 chrX 586627 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.57;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3465,378,0 chrX 586715 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.0929;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=25.50;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3927,403,0 chrX 586826 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.25;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2881,297,0 chrX 586827 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=2.967;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.145;QD=21.21;ReadPosRankSum=2.411;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2727,294,0 chrX 586915 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.11;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2862,309,0 chrX 586932 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.16;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2513,276,0 chrX 586948 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.81;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2497,252,0 chrX 586966 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.75;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2465,261,0 chrX 587344 . A G 2615 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2648,282,0 chrX 587511 . G T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3736,388,0 chrX 587592 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.72;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3913,417,0 chrX 587671 . G T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.90;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3776,388,0 chrX 587808 . G C 3034 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.22;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3067,333,0 chrX 587843 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=151;Dels=0.00;FS=2.876;HaplotypeScore=9.4707;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.212;QD=22.05;ReadPosRankSum=2.417;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3330,357,0 chrX 588360 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=201;Dels=0.00;FS=6.087;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.754;QD=23.02;ReadPosRankSum=2.895;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4627,495,0 chrX 588782 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3869,411,0 chrX 588893 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.5452;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.05;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3439,349,0 chrX 589267 . T G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.65;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3591,387,0 chrX 589418 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.161;HaplotypeScore=7.2902;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.719;QD=25.18;ReadPosRankSum=1.709;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3752,402,0 chrX 589497 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6624;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.199;QD=24.59;ReadPosRankSum=1.684;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3541,375,0 chrX 589577 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3454,375,0 chrX 589790 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=8.218;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.029;QD=23.08;ReadPosRankSum=2.373;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2987,321,0 chrX 589855 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2557,255,0 chrX 589903 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=117;Dels=0.00;FS=10.248;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.604;QD=22.60;ReadPosRankSum=2.386;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2677,297,0 chrX 589982 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2544,261,0 chrX 590030 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2329,252,0 chrX 590193 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1888,201,0 chrX 590713 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.18;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2814,285,0 chrX 590923 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.48;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3417,375,0 chrX 590949 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.2623;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.77;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3711,399,0 chrX 591544 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.87;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2892,297,0 chrX 591553 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=4.249;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.143;QD=21.51;ReadPosRankSum=1.654;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2894,312,0 chrX 591944 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.85;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3280,351,0 chrX 591972 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=131;Dels=0.00;FS=13.335;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=2.383;QD=22.03;ReadPosRankSum=2.852;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2919,312,0 chrX 592344 . T A 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.00;FS=2.690;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.191;QD=23.24;ReadPosRankSum=2.395;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3170,328,0 chrX 592363 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.20;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2874,315,0 chrX 592549 . A T 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.070;QD=24.82;ReadPosRankSum=1.648;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3086,315,0 chrX 592687 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.21;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3554,367,0 chrX 592732 . A G 3677.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.71;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3677,408,0 chrX 592918 . G C 4839.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4839,517,0 chrX 593029 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3750,391,0 chrX 593074 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=9.543;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.161;QD=23.63;ReadPosRankSum=2.366;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4158,444,0 chrX 593233 . C G 3115 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.96;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3148,339,0 chrX 593399 . C A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.44;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3397,360,0 chrX 593414 . C G 3102 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.68;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3135,330,0 chrX 593953 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.60;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4256,450,0 chrX 594047 . G T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6507;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=25.68;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4904,505,0 chrX 594204 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.516;DP=176;Dels=0.00;FS=9.054;HaplotypeScore=9.0357;MLEAC=1;MLEAF=0.500;MQ=41.90;MQ0=0;MQRankSum=1.251;QD=0.18;ReadPosRankSum=-4.946;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:164,11:176:61:61,0,470 chrX 594216 . T C 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;MQRankSum=-1.264;QD=4.78;ReadPosRankSum=1.133;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:917,102,0 chrX 594711 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2309,249,0 chrX 595037 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.9035;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.346;QD=22.21;ReadPosRankSum=0.703;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3953,385,0 chrX 595041 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0583;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.201;QD=21.15;ReadPosRankSum=1.713;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3849,411,0 chrX 595640 . G C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.32;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3739,405,0 chrX 595662 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=2.790;HaplotypeScore=8.2073;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-2.277;QD=19.66;ReadPosRankSum=2.363;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3381,369,0 chrX 595994 . T C 3002 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.56;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3035,330,0 chrX 596003 . A C 2969 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.66;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3002,318,0 chrX 596318 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.53;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4121,421,0 chrX 596360 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.6417;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.97;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4227,436,0 chrX 596468 . G C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=18.4220;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4290,474,0 chrX 596612 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.04;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4239,450,0 chrX 596669 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.17;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4102,415,0 chrX 596838 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.45;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4232,433,0 chrX 596894 . G A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.51;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4567,463,0 chrX 597290 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=24.42;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4517,475,0 chrX 597461 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.108;DP=214;Dels=0.00;FS=8.853;HaplotypeScore=16.6536;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.872;QD=22.21;ReadPosRankSum=3.305;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:4753,528,0 chrX 597659 . G A 5573.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.44;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5573,612,0 chrX 597944 . G A 5468.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.6221;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.30;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5468,580,0 chrX 598115 . T C 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=219;Dels=0.00;FS=6.081;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.732;QD=23.56;ReadPosRankSum=2.967;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:3,211:219:99:5160,556,0 chrX 598202 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=3.027;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.383;QD=23.52;ReadPosRankSum=2.411;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4493,480,0 chrX 598360 . T A 4818.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.3921;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.73;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4818,519,0 chrX 598412 . T G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.468;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.148;QD=22.42;ReadPosRankSum=1.710;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3632,390,0 chrX 598472 . A C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.67;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3604,387,0 chrX 598877 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=9.169;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=24.64;ReadPosRankSum=2.414;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3400,363,0 chrX 599340 . C T 5473.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.5146;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.57;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5473,550,0 chrX 599394 . T C 5071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=2.843;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.298;QD=23.92;ReadPosRankSum=2.403;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:5071,552,0 chrX 599916 . A C 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.674;QD=23.57;ReadPosRankSum=1.693;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4242,448,0 chrX 600173 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=7.599;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.346;QD=24.66;ReadPosRankSum=2.419;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3970,420,0 chrX 600241 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.36;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3459,363,0 chrX 600288 . A T 3120 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.37;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3153,330,0 chrX 600396 . A C 4356.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.20;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4356,465,0 chrX 600487 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9957;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.91;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3735,393,0 chrX 600589 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.7397;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.13;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4440,474,0 chrX 600714 . T G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3980,435,0 chrX 600970 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3826,417,0 chrX 601098 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.18;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3000,315,0 chrX 601100 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.99;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2911,315,0 chrX 601587 . C T 5445.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5445,565,0 chrX 602432 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.6636;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.46;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3777,423,0 chrX 602469 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.26;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4123,435,0 chrX 602644 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.7202;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.65;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3760,405,0 chrX 602831 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.49;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3491,363,0 chrX 603039 . T C 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.244;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.726;QD=23.28;ReadPosRankSum=1.695;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2221,237,0 chrX 603092 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2879,297,0 chrX 603257 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.379;QD=23.04;ReadPosRankSum=3.338;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:3686,396,0 chrX 603329 . C T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.91;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3662,379,0 chrX 604040 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=24.34;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4600,469,0 chrX 604069 . C T 2349 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=15.87;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2382,276,0 chrX 604070 . C T 2239 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=15.23;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2272,273,0 chrX 604072 . T C 2279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=152;Dels=0.00;FS=9.090;HaplotypeScore=7.5253;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-0.777;QD=14.99;ReadPosRankSum=3.390;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:2312,279,0 chrX 604111 . T G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.414;QD=17.65;ReadPosRankSum=1.712;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3122,348,0 chrX 604156 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4513;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.68;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4105,424,0 chrX 604679 . G T 2263 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.31;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2296,231,0 chrX 604715 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.16;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2293,243,0 chrX 604788 . G T 3014 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.50;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3047,309,0 chrX 604929 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.84;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2326,246,0 chrX 605076 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.17;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2929,312,0 chrX 605082 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=6.835;HaplotypeScore=5.9489;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.391;QD=21.57;ReadPosRankSum=2.164;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2815,306,0 chrX 605173 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.30;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3289,339,0 chrX 605547 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2395,258,0 chrX 605703 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=100;Dels=0.00;FS=3.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.107;QD=23.18;ReadPosRankSum=2.375;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2351,252,0 chrX 606199 . T C 5121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4231;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.688;QD=24.50;ReadPosRankSum=1.682;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5121,549,0 chrX 606285 . C A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=24.80;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5159,549,0 chrX 606300 . T A 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=191;Dels=0.00;FS=6.089;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.532;QD=25.71;ReadPosRankSum=2.953;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4911,499,0 chrX 606367 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=192;Dels=0.00;FS=7.591;HaplotypeScore=8.0236;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=-1.511;QD=19.57;ReadPosRankSum=2.424;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3757,411,0 chrX 606382 . C A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=20.81;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4017,423,0 chrX 606409 . C G 3096 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.5867;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=15.80;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3129,354,0 chrX 606410 . G A 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.7981;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-1.234;QD=16.44;ReadPosRankSum=0.313;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3190,342,0 chrX 606423 . T C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=5.237;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-0.361;QD=16.03;ReadPosRankSum=1.714;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3031,327,0 chrX 606479 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=169;Dels=0.00;FS=8.632;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-1.019;QD=17.22;ReadPosRankSum=3.408;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:2944,318,0 chrX 606498 . A C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=18.82;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3332,357,0 chrX 606575 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=7.756;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;MQRankSum=-1.249;QD=21.13;ReadPosRankSum=2.395;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3846,414,0 chrX 606584 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=23.21;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3760,405,0 chrX 606614 . T G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;MQRankSum=-1.564;QD=22.28;ReadPosRankSum=1.676;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2796,309,0 chrX 606726 . T C 5182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=251;Dels=0.00;FS=3.335;HaplotypeScore=11.8282;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=0.942;QD=20.65;ReadPosRankSum=1.538;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5182,564,0 chrX 606777 . C G 2310 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=189.3553;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=13.51;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2343,255,0 chrX 606787 . T A 634 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=6.67;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:87:667,87,0 chrX 606788 . C A 328 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=3.45;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:48:361,48,0 chrX 606789 . C A 214 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=2.25;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:33:247,33,0 chrX 606791 . C T 98.13 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=1.00;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:18:131,18,0 chrX 606792 . T C 98.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=6.152;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-2.911;QD=0.96;ReadPosRankSum=2.892;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:18:131,18,0 chrX 606841 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0604;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.004;QD=17.08;ReadPosRankSum=1.697;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3330,357,0 chrX 606964 . A T 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;DP=153;Dels=0.00;FS=5.269;HaplotypeScore=15.7466;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=0.635;QD=19.24;ReadPosRankSum=3.150;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:2976,306,0 chrX 606979 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=19.83;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2789,294,0 chrX 607047 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=6.634;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.551;QD=20.12;ReadPosRankSum=1.652;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2648,300,0 chrX 607230 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=10.3101;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=25.06;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:2088,207,0 chrX 607262 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.32;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1362,144,0 chrX 607298 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.47;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1134,117,0 chrX 607361 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.14;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1861,189,0 chrX 607387 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.58;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1462,150,0 chrX 607391 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.53;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1322,135,0 chrX 607434 . A T 549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.277;QD=14.45;ReadPosRankSum=1.641;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:63:582,63,0 chrX 607442 . T C 359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=30;Dels=0.00;FS=2.905;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.850;QD=11.97;ReadPosRankSum=2.281;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:2,27:30:42:392,42,0 chrX 607458 . G T 579 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.09;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:612,63,0 chrX 607508 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=23.07;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1394,144,0 chrX 607523 . G T 1440 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=23.61;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1473,153,0 chrX 607636 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=25.94;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3042,309,0 chrX 607672 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=8.3096;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=23.53;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2527,273,0 chrX 607746 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.242;QD=19.81;ReadPosRankSum=1.692;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1737,183,0 chrX 607750 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.43;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1892,195,0 chrX 607764 . T C 1952 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=19.72;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1985,219,0 chrX 607806 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=18.62;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2174,231,0 chrX 607808 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=6.135;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-1.130;QD=17.17;ReadPosRankSum=1.702;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2008,231,0 chrX 607843 . A G 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=86;Dels=0.00;FS=2.605;HaplotypeScore=38.1608;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;MQRankSum=-2.193;QD=13.99;ReadPosRankSum=2.844;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1236,135,0 chrX 607948 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=20.83;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:991,111,0 chrX 607975 . T C 878 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=18.29;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:911,102,0 chrX 608008 . C A 677 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=13.54;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:710,81,0 chrX 608011 . T A 654 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=12.58;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:687,78,0 chrX 608091 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=14.1032;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.11;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2275,234,0 chrX 608120 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=87;Dels=0.00;FS=11.993;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.332;QD=22.76;ReadPosRankSum=2.221;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:2013,222,0 chrX 608157 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.44;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1566,162,0 chrX 608181 . A C 1049 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=16.14;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1082,123,0 chrX 608184 . A T 1078 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=16.33;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1111,117,0 chrX 608299 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.51;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3726,411,0 chrX 608323 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=25.01;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3752,385,0 chrX 608495 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2939;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.31;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3771,396,0 chrX 608521 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.08;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2947,298,0 chrX 609410 . C G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3761,399,0 chrX 609498 . G T 3027 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.93;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3060,313,0 chrX 609835 . T A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.7543;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.93;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3303,351,0 chrX 610270 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.27;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5218,556,0 chrX 610450 . T G 4776.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.96;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4776,528,0 chrX 610784 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.50;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2268,231,0 chrX 610792 . C A 2417 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.17;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2450,249,0 chrX 610951 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.810;QD=24.45;ReadPosRankSum=1.657;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3398,360,0 chrX 612210 . A C 2427 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2460,261,0 chrX 612277 . C G 2739 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2772,294,0 chrX 612460 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.378;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.8731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.550;QD=22.52;ReadPosRankSum=0.899;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3051,313,0 chrX 613117 . T G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.018;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.309;QD=24.93;ReadPosRankSum=2.160;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1728,163,0 chrX 616115 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2705,291,0 chrX 616450 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.12;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2906,303,0 chrX 618046 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=127;Dels=0.00;FS=3.680;HaplotypeScore=14.9899;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.100;QD=17.72;ReadPosRankSum=1.705;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2284,246,0 chrX 618660 . G T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3772,394,0 chrX 619631 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4058,438,0 chrX 619975 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=24.97;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2205,234,0 chrX 620010 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.32;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1689,180,0 chrX 620054 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=23.53;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1774,189,0 chrX 620064 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=22.12;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1692,180,0 chrX 620255 . T A 1837 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=27.83;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1870,195,0 chrX 620362 . T C 411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;MQRankSum=-0.527;QD=8.74;ReadPosRankSum=1.506;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:48:444,48,0 chrX 620371 . T C 546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=-0.267;QD=10.50;ReadPosRankSum=1.599;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:63:579,63,0 chrX 620583 . T C 1330 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.00;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1363,150,0 chrX 620737 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=97;Dels=0.00;FS=11.602;HaplotypeScore=83.9627;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.158;QD=0.27;ReadPosRankSum=2.906;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:3,93:97:6:57,6,0 chrX 621639 . A G 6362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=272;Dels=0.00;FS=2.840;HaplotypeScore=22.1338;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.323;QD=23.39;ReadPosRankSum=2.422;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:2,266:272:99:6362,699,0 chrX 621779 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=216;Dels=0.00;FS=6.122;HaplotypeScore=12.3812;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.131;QD=23.59;ReadPosRankSum=2.427;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5096,561,0 chrX 621875 . T G 4898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=219;Dels=0.00;FS=3.607;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.414;QD=22.37;ReadPosRankSum=1.716;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4898,543,0 chrX 622079 . C T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4935,528,0 chrX 622386 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.06;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4763,493,0 chrX 622424 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.456;QD=23.19;ReadPosRankSum=1.715;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4661,507,0 chrX 622445 . A T 4762.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.94;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4762,493,0 chrX 622592 . G A 6925.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.91;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:6925,733,0 chrX 622799 . A G 8242.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=374;Dels=0.00;FS=2.994;HaplotypeScore=19.9713;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.144;QD=22.04;ReadPosRankSum=2.410;SB=-4.516e+03 GT:AD:DP:GQ:PL 1/1:2,372:374:99:8242,895,0 chrX 622874 . G A 5250.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.3249;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.33;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5250,544,0 chrX 622910 . G A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.81;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4677,493,0 chrX 623040 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=151;Dels=0.00;FS=9.563;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.313;QD=24.39;ReadPosRankSum=2.954;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3683,390,0 chrX 623184 . C G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.871;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5201;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.890;QD=20.46;ReadPosRankSum=0.354;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3744,420,0 chrX 623186 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.7208;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.086;QD=21.72;ReadPosRankSum=0.488;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3932,409,0 chrX 623330 . G C 5657.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.77;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5657,598,0 chrX 624405 . T C 6899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=299;Dels=0.00;FS=4.135;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.116;QD=23.07;ReadPosRankSum=1.616;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:1,297:299:99:6899,736,0 chrX 624474 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.88;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3404,349,0 chrX 624670 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.96;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3375,366,0 chrX 624789 . T G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.711;QD=19.05;ReadPosRankSum=2.416;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2871,306,0 chrX 624801 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.13;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3170,351,0 chrX 625035 . C T 5060.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.10;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5060,529,0 chrX 625116 . A G 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=2.900;HaplotypeScore=14.2837;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.677;QD=22.22;ReadPosRankSum=2.386;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4355,465,0 chrX 625188 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=1.069;QD=20.89;ReadPosRankSum=0.477;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,222:228:99:4762,519,0 chrX 625191 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.99;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5080,520,0 chrX 625737 . C G 5186.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.35;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5186,564,0 chrX 625757 . A G 5201.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.04;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5201,556,0 chrX 625794 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.69;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4728,490,0 chrX 625994 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=7.198;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.794;QD=23.29;ReadPosRankSum=2.381;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2572,285,0 chrX 626304 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=4.429;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.533;QD=23.85;ReadPosRankSum=1.675;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2991,318,0 chrX 626403 . T A 2872 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2905,312,0 chrX 626625 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.78;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3429,355,0 chrX 626664 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3182,339,0 chrX 626736 . A C 3167 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3200,339,0 chrX 626946 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.37;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2570,270,0 chrX 627062 . C G 2775 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2808,303,0 chrX 627134 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.151;DP=98;Dels=0.00;FS=13.846;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.302;QD=21.71;ReadPosRankSum=3.187;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:2161,234,0 chrX 627282 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.53;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2504,261,0 chrX 627341 . T C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.506;QD=24.09;ReadPosRankSum=1.671;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2779,300,0 chrX 627547 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9713;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.94;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4040,412,0 chrX 627628 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3845,414,0 chrX 627942 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.40;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2923,300,0 chrX 627948 . G A 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.782;QD=20.51;ReadPosRankSum=-1.397;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2597,276,0 chrX 628038 . A G 2651 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.24;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2684,294,0 chrX 628044 . T C 2579 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.115;QD=19.10;ReadPosRankSum=1.706;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2612,282,0 chrX 628048 . G A 2513 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.34;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2546,261,0 chrX 628319 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1164;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.18;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2638,270,0 chrX 628435 . A T 2773 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2806,291,0 chrX 628623 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.389;QD=22.81;ReadPosRankSum=1.705;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2975,327,0 chrX 628891 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=24.62;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3447,366,0 chrX 628897 . A T 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=6.113;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-0.012;QD=24.84;ReadPosRankSum=1.659;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3552,361,0 chrX 629030 . G C 3703.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.35;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3703,402,0 chrX 629035 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.02;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3876,400,0 chrX 629082 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=199;Dels=0.00;FS=6.070;HaplotypeScore=11.2915;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-0.288;QD=19.14;ReadPosRankSum=2.924;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:3809,408,0 chrX 629091 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.8022;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-0.364;QD=17.56;ReadPosRankSum=1.714;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3476,375,0 chrX 629098 . G C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7659;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=18.41;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3554,378,0 chrX 629134 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=228;Dels=0.00;FS=12.638;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.678;QD=19.49;ReadPosRankSum=3.390;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:4,220:228:99:4443,474,0 chrX 629161 . A T 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=213;Dels=0.00;FS=5.978;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=1.175;QD=20.01;ReadPosRankSum=2.967;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4262,453,0 chrX 629183 . C T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.5310;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.16;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4609,472,0 chrX 629316 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=22.94;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3327,366,0 chrX 629482 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.86;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1382,144,0 chrX 629495 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.76;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1285,132,0 chrX 629566 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=9.8797;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.67;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:96:836,96,0 chrX 629789 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.94;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2926,312,0 chrX 629879 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.879;HaplotypeScore=10.1147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.035;QD=24.61;ReadPosRankSum=1.709;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3740,399,0 chrX 630149 . A T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.04;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4099,447,0 chrX 630373 . A G 5477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=214;Dels=0.00;FS=8.915;HaplotypeScore=14.7884;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.025;QD=25.59;ReadPosRankSum=2.404;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5477,580,0 chrX 630419 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.3473;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.67;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4670,510,0 chrX 630494 . C T 5595.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.3375;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=25.67;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5595,583,0 chrX 630716 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.91;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4141,433,0 chrX 630728 . A C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.081;QD=19.34;ReadPosRankSum=1.662;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:3849,414,0 chrX 630743 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.375;QD=19.09;ReadPosRankSum=1.661;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3742,396,0 chrX 631268 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.785;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.758;QD=20.41;ReadPosRankSum=1.664;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3176,348,0 chrX 631286 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.27;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3467,372,0 chrX 631978 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.707;QD=20.86;ReadPosRankSum=1.716;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4465,486,0 chrX 631982 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=216;Dels=0.00;FS=7.278;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.735;QD=20.14;ReadPosRankSum=2.380;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,210:216:99:4350,480,0 chrX 633487 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.831;QD=23.54;ReadPosRankSum=1.628;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2411,261,0 chrX 633866 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4340,442,0 chrX 637667 . A T 6150.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.7692;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.50;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6150,637,0 chrX 638730 . T C 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=215;Dels=0.00;FS=6.377;HaplotypeScore=24.9530;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.048;QD=21.74;ReadPosRankSum=2.403;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:4675,513,0 chrX 639041 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7372;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.44;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4246,459,0 chrX 639262 . A T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3308,351,0 chrX 640468 . C T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=28.7027;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.90;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5102,523,0 chrX 640502 . G C 4347.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.07;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4347,471,0 chrX 641753 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1429,150,0 chrX 641813 . T G 1777 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1810,195,0 chrX 642106 . A T 2891 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.05;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2924,300,0 chrX 642317 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.427;QD=23.41;ReadPosRankSum=1.661;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3465,378,0 chrX 642379 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.110;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.417;QD=21.45;ReadPosRankSum=1.634;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3775,405,0 chrX 644097 . G C 2747 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2780,297,0 chrX 644500 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=3.031;HaplotypeScore=15.5451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.032;QD=23.60;ReadPosRankSum=2.424;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4579,489,0 chrX 644548 . T G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=188;Dels=0.00;FS=3.034;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.939;QD=24.98;ReadPosRankSum=2.423;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4696,493,0 chrX 644706 . A T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.10;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4000,420,0 chrX 645026 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.52;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3598,367,0 chrX 645066 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3001,309,0 chrX 645361 . A T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.99;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3697,376,0 chrX 645565 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.71;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3625,373,0 chrX 646018 . A C 2301 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2334,246,0 chrX 646356 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.64;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2777,288,0 chrX 646432 . T A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.015;QD=24.42;ReadPosRankSum=1.703;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2939,303,0 chrX 646496 . T C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=143;Dels=0.00;FS=3.104;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.725;QD=22.40;ReadPosRankSum=1.683;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3236,351,0 chrX 647196 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.08;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3624,384,0 chrX 647222 . G T 3096 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3129,316,0 chrX 648431 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.12;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3738,399,0 chrX 648461 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.76;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3504,369,0 chrX 649035 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.29;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3970,406,0 chrX 649219 . A G 1105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=16.2236;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.704;QD=17.00;ReadPosRankSum=0.758;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1138,129,0 chrX 651274 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2647,279,0 chrX 652155 . T C 6008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=246;Dels=0.00;FS=3.024;HaplotypeScore=21.6159;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.065;QD=24.42;ReadPosRankSum=2.399;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:6008,637,0 chrX 652362 . T C 5162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=3.512;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.475;QD=22.54;ReadPosRankSum=1.717;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5162,567,0 chrX 653026 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=157;Dels=0.00;FS=3.020;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.496;QD=18.55;ReadPosRankSum=2.402;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:2946,324,0 chrX 653283 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.8629;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.29;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4391,463,0 chrX 653755 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4183,450,0 chrX 654612 . A T 2221 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.38;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2254,240,0 chrX 655475 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3995,415,0 chrX 656567 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3286,331,0 chrX 657424 . C G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.98;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3524,390,0 chrX 657710 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3090,316,0 chrX 657858 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3275,351,0 chrX 657928 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.534;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.908;QD=25.16;ReadPosRankSum=1.676;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4679,496,0 chrX 658094 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3698,379,0 chrX 658561 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.79;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4358,451,0 chrX 658665 . T C 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.195;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=238.0059;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.223;QD=3.94;ReadPosRankSum=-9.599;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:114,77:192:93:794,93,0 chrX 658912 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.57;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2543,264,0 chrX 659016 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.61;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3406,357,0 chrX 659425 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=200;Dels=0.00;FS=6.219;HaplotypeScore=14.0125;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.301;QD=23.17;ReadPosRankSum=2.425;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4633,504,0 chrX 659507 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.26;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4419,469,0 chrX 659775 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3677,393,0 chrX 659898 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.3326;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.732;QD=23.15;ReadPosRankSum=1.709;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3519,375,0 chrX 659931 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.29;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3628,373,0 chrX 660402 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2521;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.39;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3694,408,0 chrX 660487 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.53;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3583,378,0 chrX 660546 . C T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.38;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4372,454,0 chrX 660753 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.47;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4314,451,0 chrX 660770 . C G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.05;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3649,390,0 chrX 660786 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.94;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3853,397,0 chrX 661047 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=7.139;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.560;QD=20.62;ReadPosRankSum=2.273;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4020,424,0 chrX 661050 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=195;Dels=0.00;FS=11.062;HaplotypeScore=2.7986;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.871;QD=20.18;ReadPosRankSum=2.603;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3936,429,0 chrX 661171 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.6171;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.96;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4432,472,0 chrX 661230 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.46;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3414,369,0 chrX 661266 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.70;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3829,394,0 chrX 661370 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.32;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3520,364,0 chrX 661398 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.48;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3452,363,0 chrX 661506 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.05;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4509,472,0 chrX 661545 . C G 4884.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.1686;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.71;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4884,517,0 chrX 661706 . G A 4895.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.00;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4895,496,0 chrX 661788 . C T 5661.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.03;FS=0.000;HaplotypeScore=43.3778;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.38;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5661,580,0 chrX 661920 . A G 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=3.247;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.613;QD=20.70;ReadPosRankSum=1.655;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4678,522,0 chrX 661926 . G A 4898.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.48;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4898,505,0 chrX 662146 . C T 5511.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.7717;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=23.96;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5511,565,0 chrX 662191 . T C 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=5.175;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.032;QD=21.53;ReadPosRankSum=1.716;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4628,493,0 chrX 662193 . C A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.80;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4473,474,0 chrX 662204 . C A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.59;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4641,481,0 chrX 662262 . T C 5405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=246;Dels=0.00;FS=4.114;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.035;QD=21.97;ReadPosRankSum=1.690;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5405,574,0 chrX 662282 . C T 5271.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.53;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5271,562,0 chrX 662322 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.0751;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.01;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4033,418,0 chrX 662418 . C G 4493.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.04;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4493,504,0 chrX 662679 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.99;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3152,327,0 chrX 662769 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.63;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3081,321,0 chrX 663013 . A C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=4.360;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.527;QD=23.12;ReadPosRankSum=1.711;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3745,423,0 chrX 663082 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=8.582;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.475;QD=20.36;ReadPosRankSum=2.419;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3319,351,0 chrX 663083 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.18;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3289,351,0 chrX 663098 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9865;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.28;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3564,390,0 chrX 663233 . G T 4442.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.5032;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.67;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4442,463,0 chrX 663511 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.84;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3768,414,0 chrX 663590 . A C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.628;QD=23.89;ReadPosRankSum=1.706;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3210,345,0 chrX 663968 . T A 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=85;Dels=0.00;FS=4.830;HaplotypeScore=8.6934;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.724;QD=16.78;ReadPosRankSum=3.217;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:6,79:85:99:1459,165,0 chrX 664824 . A G 5693.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.5312;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.50;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5693,607,0 chrX 665190 . T A 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.669;QD=22.87;ReadPosRankSum=1.669;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2549,261,0 chrX 666622 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=159;Dels=0.00;FS=7.945;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.348;QD=23.44;ReadPosRankSum=2.419;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3727,402,0 chrX 666742 . T G 4129.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.33;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4129,433,0 chrX 667117 . A G 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.254;QD=19.43;ReadPosRankSum=1.553;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1160,126,0 chrX 667428 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.96;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1331,144,0 chrX 667452 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.11;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1965,198,0 chrX 669427 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.99;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2276,240,0 chrX 670679 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.972;QD=24.47;ReadPosRankSum=-0.929;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4062,391,0 chrX 671070 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.71;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3731,382,0 chrX 673092 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.577;QD=24.87;ReadPosRankSum=1.705;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3265,357,0 chrX 673602 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4591,475,0 chrX 673954 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.779;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.041;QD=24.53;ReadPosRankSum=2.417;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3704,390,0 chrX 674570 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2623;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.45;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1985,213,0 chrX 675076 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=122;Dels=0.00;FS=5.669;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=22.12;ReadPosRankSum=2.925;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2732,291,0 chrX 675286 . T A 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.433;QD=24.71;ReadPosRankSum=1.709;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3756,396,0 chrX 678068 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.900;QD=22.94;ReadPosRankSum=1.710;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3555,378,0 chrX 681144 . C G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.19;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4522,484,0 chrX 681414 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.579;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.104;QD=24.00;ReadPosRankSum=1.712;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4152,439,0 chrX 681476 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.68;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3651,384,0 chrX 681606 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.660;QD=25.75;ReadPosRankSum=1.660;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4995,529,0 chrX 681843 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4175,430,0 chrX 684047 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2518,270,0 chrX 684758 . G C 3927.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.70;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3927,417,0 chrX 685154 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=4.604;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.559;QD=25.57;ReadPosRankSum=1.678;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3273,345,0 chrX 685208 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.37;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3118,319,0 chrX 685478 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.559;QD=23.91;ReadPosRankSum=1.663;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2472,264,0 chrX 685862 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.67;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2330,252,0 chrX 685872 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.50;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2485,255,0 chrX 685982 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3554,378,0 chrX 686433 . C A 2050 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.14;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2083,225,0 chrX 686498 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.91;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2605,267,0 chrX 686736 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=136;Dels=0.00;FS=10.372;HaplotypeScore=15.3985;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.481;QD=24.46;ReadPosRankSum=2.948;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:3,131:136:99:3327,354,0 chrX 686894 . A C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.630;QD=24.09;ReadPosRankSum=1.710;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3758,386,0 chrX 692804 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3609,373,0 chrX 693187 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3824,414,0 chrX 693257 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.151;QD=26.10;ReadPosRankSum=-0.128;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3889,397,0 chrX 694041 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.00;FS=6.314;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.624;QD=22.52;ReadPosRankSum=2.395;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3118,345,0 chrX 694743 . A C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=183;Dels=0.00;FS=2.982;HaplotypeScore=12.7011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.277;QD=23.09;ReadPosRankSum=2.396;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4225,445,0 chrX 695712 . G C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3731,399,0 chrX 695759 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4060,421,0 chrX 702597 . C A 7314.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=19.3308;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.15;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:7314,775,0 chrX 703116 . A T 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1403,144,0 chrX 703339 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1544,174,0 chrX 703470 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.40;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2958,309,0 chrX 703501 . A T 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=3.606;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.281;QD=20.82;ReadPosRankSum=1.703;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2469,264,0 chrX 703629 . A G 6620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=274;Dels=0.00;FS=13.450;HaplotypeScore=24.2595;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.874;QD=24.16;ReadPosRankSum=2.395;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,269:274:99:6620,729,0 chrX 703809 . C T 6989.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=23.7088;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.10;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6989,718,0 chrX 703893 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.65;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4210,442,0 chrX 704028 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.1622;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.55;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4403,489,0 chrX 704179 . A C 7200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=312;Dels=0.00;FS=3.722;HaplotypeScore=20.0759;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.017;QD=23.08;ReadPosRankSum=1.710;SB=-3.259e+03 GT:AD:DP:GQ:PL 1/1:1,310:312:99:7200,792,0 chrX 704310 . C T 5450.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.19;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5450,559,0 chrX 704425 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=21.52;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3594,381,0 chrX 704426 . C A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=22.67;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3718,382,0 chrX 704535 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.83;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3707,376,0 chrX 704795 . A T 4946.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3967;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.49;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4946,505,0 chrX 704982 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.04;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4170,468,0 chrX 704998 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.49;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4528,466,0 chrX 705262 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=216;Dels=0.00;FS=6.849;HaplotypeScore=18.3033;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.017;QD=22.05;ReadPosRankSum=2.404;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4762,516,0 chrX 705300 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.00;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4489,466,0 chrX 705423 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.329;QD=21.65;ReadPosRankSum=1.711;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3551,381,0 chrX 705450 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.07;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3553,367,0 chrX 705542 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.212;QD=22.70;ReadPosRankSum=1.707;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3211,339,0 chrX 705581 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.346;QD=21.59;ReadPosRankSum=1.706;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2947,318,0 chrX 705586 . C A 2875 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.95;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2908,303,0 chrX 705793 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=4.956;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.024;QD=24.40;ReadPosRankSum=1.708;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3562,393,0 chrX 705848 . G C 3109 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.03;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3142,342,0 chrX 705865 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.40;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3319,345,0 chrX 705917 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.18;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3431,372,0 chrX 705920 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5031;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.91;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3430,363,0 chrX 706135 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.29;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4754,516,0 chrX 706199 . C T 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.010;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=21.0652;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.738;QD=24.50;ReadPosRankSum=-1.075;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5292,522,0 chrX 707018 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.61;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2863,303,0 chrX 707043 . C A 2720 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.42;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2753,279,0 chrX 707089 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.75;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2879,294,0 chrX 707206 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.57;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3477,363,0 chrX 707260 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8991;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.92;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3292,340,0 chrX 708227 . T G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=5.421;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-0.962;QD=21.96;ReadPosRankSum=1.636;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2405,255,0 chrX 710013 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3319,366,0 chrX 710097 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.1428;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.18;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3941,417,0 chrX 710469 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=217.1156;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=24.11;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3143,324,0 chrX 710974 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.69;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4123,438,0 chrX 714763 . T G 754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.731;DP=329;Dels=0.00;FS=595.171;HaplotypeScore=25.9764;MLEAC=1;MLEAF=0.500;MQ=56.11;MQ0=0;MQRankSum=6.842;QD=2.29;ReadPosRankSum=-8.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,100:329:99:784,0,4005 chrX 714787 . A T 6313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=299;Dels=0.00;FS=2.485;HaplotypeScore=36.7706;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=2.185;QD=21.11;ReadPosRankSum=2.272;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:3,296:299:99:6313,676,0 chrX 715050 . G A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DP=376;Dels=0.00;FS=0.493;HaplotypeScore=14.6976;MLEAC=1;MLEAF=0.500;MQ=41.94;MQ0=0;MQRankSum=-7.579;QD=0.28;ReadPosRankSum=-4.210;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:309,67:376:99:137,0,5824 chrX 715054 . G T 440.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;DP=387;Dels=0.00;FS=2.707;HaplotypeScore=17.0636;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=0;MQRankSum=-9.674;QD=1.14;ReadPosRankSum=-5.128;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:297,84:387:99:470,0,5313 chrX 715068 . G A 2039.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DP=404;Dels=0.00;FS=9.609;HaplotypeScore=16.1977;MLEAC=1;MLEAF=0.500;MQ=40.79;MQ0=0;MQRankSum=-10.312;QD=5.05;ReadPosRankSum=-2.949;SB=-1.579e+03 GT:AD:DP:GQ:PL 0/1:212,192:404:99:2069,0,3960 chrX 715072 . G T 2292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.022;DP=388;Dels=0.00;FS=3.830;HaplotypeScore=61.2417;MLEAC=1;MLEAF=0.500;MQ=40.42;MQ0=0;MQRankSum=-8.808;QD=5.91;ReadPosRankSum=-1.094;SB=-1.693e+03 GT:AD:DP:GQ:PL 0/1:192,196:388:99:2322,0,3212 chrX 715081 . T G 1750.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.725;DP=384;Dels=0.00;FS=0.783;HaplotypeScore=63.2344;MLEAC=1;MLEAF=0.500;MQ=39.64;MQ0=2;MQRankSum=-3.710;QD=4.56;ReadPosRankSum=0.150;SB=-1.396e+03 GT:AD:DP:GQ:PL 0/1:218,165:384:99:1780,0,3509 chrX 715087 . A G 1856.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=16.3702;MLEAC=1;MLEAF=0.500;MQ=38.60;MQ0=4;MQRankSum=-3.155;QD=5.11;ReadPosRankSum=2.120;SB=-1.524e+03 GT:AD:DP:GQ:PL 0/1:197,166:363:99:1886,0,3097 chrX 715095 . G A 2467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.558;DP=338;Dels=0.00;FS=0.398;HaplotypeScore=6.6820;MLEAC=1;MLEAF=0.500;MQ=36.83;MQ0=5;MQRankSum=-0.356;QD=7.30;ReadPosRankSum=-6.307;SB=-1.567e+03 GT:AD:DP:GQ:PL 0/1:173,165:338:99:2497,0,1932 chrX 715099 . G T 2235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.335;DP=325;Dels=0.00;FS=0.853;HaplotypeScore=48.9729;MLEAC=1;MLEAF=0.500;MQ=36.05;MQ0=5;MQRankSum=-1.255;QD=6.88;ReadPosRankSum=-8.222;SB=-1.420e+03 GT:AD:DP:GQ:PL 0/1:174,151:325:99:2265,0,1857 chrX 715108 . A T 1003.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=303;Dels=0.00;FS=3.032;HaplotypeScore=98.5093;MLEAC=1;MLEAF=0.500;MQ=35.13;MQ0=5;MQRankSum=0.012;QD=3.31;ReadPosRankSum=-9.331;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:176,80:303:99:1033,0,2062 chrX 715114 . G A 383.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.178;DP=281;Dels=0.00;FS=0.564;HaplotypeScore=52.2410;MLEAC=1;MLEAF=0.500;MQ=34.61;MQ0=5;MQRankSum=-0.835;QD=1.36;ReadPosRankSum=-6.123;SB=-2.870e+02 GT:AD:DP:GQ:PL 0/1:228,53:281:99:413,0,2670 chrX 715126 . A G 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DP=213;Dels=0.00;FS=0.613;HaplotypeScore=35.9337;MLEAC=1;MLEAF=0.500;MQ=35.02;MQ0=5;MQRankSum=-1.755;QD=1.84;ReadPosRankSum=-6.146;SB=-2.570e+02 GT:AD:DP:GQ:PL 0/1:164,48:213:99:421,0,1724 chrX 715129 . C A 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=196;Dels=0.00;FS=1.367;HaplotypeScore=29.9539;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=6;MQRankSum=-1.512;QD=0.86;ReadPosRankSum=-7.783;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:150,44:196:99:199,0,1525 chrX 715567 . G C 4017.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.3415;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.79;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4017,429,0 chrX 715574 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.78;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4035,426,0 chrX 716647 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.4051;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3283,351,0 chrX 718643 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.28;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3981,426,0 chrX 724397 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.53;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3582,367,0 chrX 724819 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2431,249,0 chrX 725020 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=4.735;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.713;QD=26.01;ReadPosRankSum=1.703;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:3154,339,0 chrX 726314 . C T 6453.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.4534;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.21;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6453,664,0 chrX 727023 . G C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3895,417,0 chrX 727128 . T A 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.125;QD=24.87;ReadPosRankSum=1.704;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3142,324,0 chrX 727330 . C G 584.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;DP=222;Dels=0.00;FS=1.222;HaplotypeScore=19.9393;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-11.123;QD=2.63;ReadPosRankSum=-4.170;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:161,56:222:99:614,0,3214 chrX 727369 . T C 2458.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DP=321;Dels=0.00;FS=0.413;HaplotypeScore=16.1331;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=0;MQRankSum=-15.048;QD=7.66;ReadPosRankSum=2.765;SB=-1.312e+03 GT:AD:DP:GQ:PL 0/1:174,146:321:99:2488,0,3431 chrX 727432 . A G 2298.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.035;DP=360;Dels=0.00;FS=4.168;HaplotypeScore=22.5982;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=0;MQRankSum=-15.947;QD=6.38;ReadPosRankSum=1.011;SB=-1.163e+03 GT:AD:DP:GQ:PL 0/1:216,144:360:99:2328,0,4721 chrX 727527 . G A 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.212;DP=278;Dels=0.00;FS=156.377;HaplotypeScore=15.0903;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-10.976;QD=0.41;ReadPosRankSum=-0.668;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,49:278:99:145,0,4995 chrX 727533 . A G 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;DP=291;Dels=0.00;FS=176.843;HaplotypeScore=10.8734;MLEAC=1;MLEAF=0.500;MQ=54.91;MQ0=0;MQRankSum=-11.671;QD=0.28;ReadPosRankSum=-0.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,57:291:99:112,0,5085 chrX 727548 . C T 283.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.425;DP=319;Dels=0.00;FS=159.560;HaplotypeScore=17.3397;MLEAC=1;MLEAF=0.500;MQ=54.33;MQ0=0;MQRankSum=-11.909;QD=0.89;ReadPosRankSum=0.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,72:319:99:313,0,5234 chrX 727551 . T C 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.084;DP=319;Dels=0.00;FS=198.570;HaplotypeScore=15.7076;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=0;MQRankSum=-12.650;QD=0.68;ReadPosRankSum=2.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,69:319:99:247,0,5345 chrX 727557 . G A 358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.378;DP=327;Dels=0.00;FS=222.786;HaplotypeScore=18.7529;MLEAC=1;MLEAF=0.500;MQ=53.75;MQ0=0;MQRankSum=-13.251;QD=1.09;ReadPosRankSum=1.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:247,78:327:99:388,0,5242 chrX 727566 . T C 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.362;DP=358;Dels=0.00;FS=260.357;HaplotypeScore=30.1212;MLEAC=1;MLEAF=0.500;MQ=53.39;MQ0=0;MQRankSum=-14.229;QD=1.19;ReadPosRankSum=0.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:265,91:358:99:457,0,5480 chrX 727611 . C T 403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.934;DP=361;Dels=0.00;FS=187.427;HaplotypeScore=19.6016;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=-13.413;QD=1.12;ReadPosRankSum=1.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,85:361:99:433,0,5790 chrX 727614 . C T 221.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=354;Dels=0.00;FS=205.819;HaplotypeScore=19.6016;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=0;MQRankSum=-13.358;QD=0.62;ReadPosRankSum=2.349;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,78:354:99:251,0,5856 chrX 727617 . T C 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.646;DP=353;Dels=0.00;FS=195.243;HaplotypeScore=19.6016;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=0;MQRankSum=-13.075;QD=0.36;ReadPosRankSum=2.362;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,74:353:99:157,0,6038 chrX 727620 . G A 228.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;DP=342;Dels=0.00;FS=184.060;HaplotypeScore=23.2047;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=0;MQRankSum=-12.537;QD=0.67;ReadPosRankSum=2.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:271,69:342:99:258,0,5801 chrX 727626 . T C 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=340;Dels=0.00;FS=179.987;HaplotypeScore=20.1774;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=-12.406;QD=0.54;ReadPosRankSum=1.063;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,64:340:99:215,0,5688 chrX 729142 . T C 13183.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.598;DP=831;Dels=0.00;FS=39.594;HaplotypeScore=55.8437;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=123;MQRankSum=-2.440;QD=15.86;ReadPosRankSum=6.478;SB=-7.431e+03 GT:AD:DP:GQ:PL 1/1:16,814:831:99:13183,1470,0 chrX 738075 . G T 3948.01 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=9;QD=22.69;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3948,414,0 chrX 743403 . C G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.044;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=15.50;MQ0=41;MQRankSum=-0.079;QD=0.45;ReadPosRankSum=0.988;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,22:117:83:83,0,863 chrX 743425 . C G 1237 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.63;MQ0=78;QD=7.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,167:174:99:1270,141,0 chrX 743437 . C T 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=1;MLEAF=0.500;MQ=12.15;MQ0=113;MQRankSum=-3.453;QD=0.41;ReadPosRankSum=-2.158;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,58:225:99:123,0,848 chrX 744353 . T C 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.037;DP=328;Dels=0.00;FS=5.759;HaplotypeScore=114.6274;MLEAC=1;MLEAF=0.500;MQ=10.15;MQ0=122;MQRankSum=5.945;QD=1.39;ReadPosRankSum=-6.023;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:227,101:328:99:485,0,156 chrX 744362 . T C 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.656;DP=318;Dels=0.00;FS=15.263;HaplotypeScore=47.3025;MLEAC=1;MLEAF=0.500;MQ=9.06;MQ0=131;MQRankSum=2.539;QD=0.69;ReadPosRankSum=-2.960;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:163,152:318:55:251,0,55 chrX 744903 . A G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=10.6991;MLEAC=1;MLEAF=0.500;MQ=7.49;MQ0=330;MQRankSum=2.957;QD=0.08;ReadPosRankSum=-4.272;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:390,15:408:63:63,0,182 chrX 745032 . A G 1259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=997;DS;Dels=0.00;FS=13.810;HaplotypeScore=102.3522;MLEAC=1;MLEAF=0.500;MQ=15.51;MQ0=420;MQRankSum=-4.208;QD=1.26;ReadPosRankSum=2.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:627,363:997:99:1289,0,3661 chrX 745121 . G C 3731.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=1000;DS;Dels=0.00;FS=27.996;HaplotypeScore=145.8184;MLEAC=1;MLEAF=0.500;MQ=35.79;MQ0=101;MQRankSum=-1.199;QD=3.73;ReadPosRankSum=2.279;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:720,265:1000:99:3731,0,11145 chrX 745173 . C T 343.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.609;DP=1000;DS;Dels=0.00;FS=11.611;HaplotypeScore=45.7282;MLEAC=1;MLEAF=0.500;MQ=29.52;MQ0=306;MQRankSum=0.356;QD=0.34;ReadPosRankSum=-0.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:856,140:1000:99:373,0,8786 chrX 745436 . T C 964.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=1000;DS;Dels=0.00;FS=200.990;HaplotypeScore=879.5700;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=81;MQRankSum=0.470;QD=0.96;ReadPosRankSum=-3.225;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:815,172:999:99:994,0,7128 chrX 745451 . G A 1169.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.006;DP=1000;DS;Dels=0.00;FS=205.377;HaplotypeScore=321.1462;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=46;MQRankSum=6.149;QD=1.17;ReadPosRankSum=-3.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:816,182:1000:99:1199,0,8563 chrX 745453 . A G 322.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.107;DP=1000;DS;Dels=0.00;FS=153.275;HaplotypeScore=323.5122;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=34;MQRankSum=0.479;QD=0.32;ReadPosRankSum=-2.568;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:833,155:1000:99:352,0,10026 chrX 745461 . A T 1580.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=1000;DS;Dels=0.00;FS=72.790;HaplotypeScore=285.1447;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=27;MQRankSum=4.843;QD=1.58;ReadPosRankSum=-2.553;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:784,212:1000:99:1610,0,8843 chrX 745468 . A G 333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860;DP=1000;DS;Dels=0.00;FS=55.815;HaplotypeScore=201.0846;MLEAC=1;MLEAF=0.500;MQ=30.78;MQ0=19;MQRankSum=-0.158;QD=0.33;ReadPosRankSum=-1.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:874,123:1000:99:363,0,11304 chrX 745488 . G A 1762.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.993;DP=1000;DS;Dels=0.00;FS=68.752;HaplotypeScore=538.1433;MLEAC=1;MLEAF=0.500;MQ=33.36;MQ0=17;MQRankSum=-3.037;QD=1.76;ReadPosRankSum=3.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:704,291:1000:99:1792,0,13247 chrX 745492 . A G 1620.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.903;DP=994;DS;Dels=0.01;FS=46.243;HaplotypeScore=861.1726;MLEAC=1;MLEAF=0.500;MQ=33.63;MQ0=13;MQRankSum=-3.066;QD=1.63;ReadPosRankSum=3.321;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:707,272:983:99:1650,0,13216 chrX 745495 . G A 1366.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.248;DP=1000;DS;Dels=0.01;FS=88.516;HaplotypeScore=1100.7480;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=14;MQRankSum=0.296;QD=1.37;ReadPosRankSum=0.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:802,175:990:99:1396,0,13224 chrX 745504 . A G 2559.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;DP=1000;DS;Dels=0.01;FS=139.136;HaplotypeScore=747.6379;MLEAC=1;MLEAF=0.500;MQ=32.73;MQ0=14;MQRankSum=0.263;QD=2.56;ReadPosRankSum=-1.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:732,255:990:99:2589,0,11096 chrX 745518 . A T 1693.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760;DP=977;DS;Dels=0.02;FS=40.572;HaplotypeScore=395.9797;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=17;MQRankSum=-4.350;QD=1.73;ReadPosRankSum=1.655;SB=-8.100e+02 GT:AD:DP:GQ:PL 0/1:752,203:956:99:1723,0,12414 chrX 745529 . G A 3560.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.246;DP=999;DS;Dels=0.00;FS=9.631;HaplotypeScore=452.7452;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=16;MQRankSum=4.962;QD=3.56;ReadPosRankSum=4.207;SB=-1.114e+03 GT:AD:DP:GQ:PL 0/1:721,277:999:99:3560,0,9446 chrX 745543 . T C 2344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;DP=985;DS;Dels=0.01;FS=64.138;HaplotypeScore=934.0844;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=16;MQRankSum=0.800;QD=2.38;ReadPosRankSum=1.173;SB=-1.016e+03 GT:AD:DP:GQ:PL 0/1:742,221:974:99:2374,0,9947 chrX 745571 . G A 3006.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;DP=771;DS;Dels=0.00;FS=6.603;HaplotypeScore=355.2749;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=17;MQRankSum=-1.565;QD=3.90;ReadPosRankSum=-0.784;SB=-9.620e+02 GT:AD:DP:GQ:PL 0/1:293,377:771:99:3036,0,2458 chrX 745589 . G A 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.953;DP=625;DS;Dels=0.00;FS=46.042;HaplotypeScore=788.7758;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=15;MQRankSum=-3.134;QD=0.31;ReadPosRankSum=-1.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:511,114:625:99:226,0,3055 chrX 745593 . C A,G 1377.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=9.540;DP=547;DS;Dels=0.00;FS=87.109;HaplotypeScore=615.5750;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.93;MQ0=15;MQRankSum=-0.609;QD=2.52;ReadPosRankSum=-1.084;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/2:79,251,217:547:99:1437,365,1069,338,0,1039 chrX 745597 . A G 1518.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;DP=488;DS;Dels=0.00;FS=140.559;HaplotypeScore=912.8348;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=13;MQRankSum=-1.334;QD=3.11;ReadPosRankSum=2.207;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:80,272:486:99:1548,0,606 chrX 745598 . A G 973.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.595;DP=481;DS;Dels=0.00;FS=35.705;HaplotypeScore=995.0757;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=13;MQRankSum=-3.276;QD=2.02;ReadPosRankSum=1.805;SB=-2.280e+02 GT:AD:DP:GQ:PL 0/1:165,263:479:99:1003,0,1512 chrX 745607 . T A 580.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.925;DP=470;DS;Dels=0.00;FS=30.155;HaplotypeScore=1039.2710;MLEAC=1;MLEAF=0.500;MQ=21.27;MQ0=10;MQRankSum=1.571;QD=1.23;ReadPosRankSum=2.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:377,91:468:99:610,0,1721 chrX 745609 . T G 914.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DP=416;DS;Dels=0.00;FS=89.038;HaplotypeScore=926.2322;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=10;MQRankSum=1.484;QD=2.20;ReadPosRankSum=0.597;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:56,141:414:99:944,0,389 chrX 745610 . A G 680.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.737;DP=415;DS;Dels=0.00;FS=6.503;HaplotypeScore=1067.6920;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=10;MQRankSum=1.288;QD=1.64;ReadPosRankSum=2.802;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:319,95:414:99:710,0,743 chrX 745616 . G A 634.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.442;DP=403;DS;Dels=0.05;FS=24.725;HaplotypeScore=1475.7946;MLEAC=1;MLEAF=0.500;MQ=21.17;MQ0=10;MQRankSum=2.765;QD=1.57;ReadPosRankSum=1.930;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:294,90:384:99:664,0,1237 chrX 745622 . T G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.851;DP=376;DS;Dels=0.02;FS=2.633;HaplotypeScore=1835.4694;MLEAC=1;MLEAF=0.500;MQ=21.10;MQ0=8;MQRankSum=-1.102;QD=0.05;ReadPosRankSum=-8.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:272,55:369:49:49,0,1028 chrX 745644 . T A 703.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DP=455;Dels=0.00;FS=32.494;HaplotypeScore=510.0521;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=7;MQRankSum=1.164;QD=1.55;ReadPosRankSum=7.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,181:455:99:733,0,900 chrX 745686 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.076;DP=721;Dels=0.01;FS=4.396;HaplotypeScore=1116.1170;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=9;MQRankSum=3.286;QD=0.17;ReadPosRankSum=-2.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:572,129:713:99:156,0,2343 chrXI 28 . A C 165.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=43.7195;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=9;MQRankSum=0.045;QD=2.26;ReadPosRankSum=1.443;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:49,22:71:99:195,0,167 chrXI 78 . C A 66.59 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.564;DP=171;Dels=0.00;FS=5.302;HaplotypeScore=305.1711;MLEAC=1;MLEAF=0.500;MQ=19.64;MQ0=0;MQRankSum=-0.950;QD=0.39;ReadPosRankSum=3.489;SB=-7.059e+01 GT:AD:DP:GQ:PL 1/1:23,47:171:12:99,12,0 chrXI 100 . C A 497.10 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.276;DP=285;Dels=0.00;FS=145.767;HaplotypeScore=446.1672;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=9;MQRankSum=2.943;QD=1.74;ReadPosRankSum=-2.523;SB=-2.065e+02 GT:AD:DP:GQ:PL 1/1:229,48:285:19:530,19,0 chrXI 139 . T C 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.251;DP=260;Dels=0.00;FS=103.993;HaplotypeScore=49.9189;MLEAC=1;MLEAF=0.500;MQ=19.99;MQ0=14;MQRankSum=3.159;QD=2.44;ReadPosRankSum=3.476;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:126,63:260:42:665,0,42 chrXI 155 . C T 288.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.659;DP=211;Dels=0.00;FS=32.243;HaplotypeScore=98.3999;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=14;MQRankSum=-0.639;QD=1.36;ReadPosRankSum=5.539;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:108,103:211:99:318,0,572 chrXI 162 . C T 248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.328;DP=185;Dels=0.00;FS=20.871;HaplotypeScore=178.8583;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=14;MQRankSum=-0.005;QD=1.34;ReadPosRankSum=5.236;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:130,55:185:99:278,0,605 chrXI 179 . C A 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;DP=114;Dels=0.00;FS=4.413;HaplotypeScore=122.8292;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=10;MQRankSum=-1.057;QD=1.79;ReadPosRankSum=-0.304;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:29,80:114:99:234,0,275 chrXI 237 . C A 147.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=21.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:180,21,0 chrXI 243 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrXI 281 . C T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.983;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.9842;MLEAC=1;MLEAF=0.500;MQ=18.59;MQ0=29;MQRankSum=-1.163;QD=0.42;ReadPosRankSum=1.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,75:302:99:158,0,719 chrXI 324 . T A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=7.8297;MLEAC=1;MLEAF=0.500;MQ=18.25;MQ0=48;MQRankSum=4.416;QD=0.24;ReadPosRankSum=1.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,35:338:99:110,0,1073 chrXI 347 . A G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=47.3083;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=38;MQRankSum=5.243;QD=0.42;ReadPosRankSum=6.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:281,39:320:99:163,0,1110 chrXI 358 . A G 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=69.8963;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=35;MQRankSum=2.285;QD=0.19;ReadPosRankSum=5.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,23:205:68:68,0,827 chrXI 365 . T C 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=48.6566;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=32;MQRankSum=3.363;QD=0.48;ReadPosRankSum=3.591;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,12:132:93:93,0,257 chrXI 366 . A G 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=36.8811;MLEAC=1;MLEAF=0.500;MQ=18.18;MQ0=32;MQRankSum=2.934;QD=0.59;ReadPosRankSum=3.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,12:117:99:99,0,268 chrXI 373 . C T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;DP=62;Dels=0.00;FS=5.610;HaplotypeScore=21.5814;MLEAC=1;MLEAF=0.500;MQ=18.45;MQ0=25;MQRankSum=0.517;QD=2.08;ReadPosRankSum=-3.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,14:62:99:159,0,227 chrXI 387 . T C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=34;Dels=0.00;FS=11.442;HaplotypeScore=14.0748;MLEAC=1;MLEAF=0.500;MQ=21.40;MQ0=9;MQRankSum=1.287;QD=2.18;ReadPosRankSum=3.914;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:20,13:34:87:104,0,87 chrXI 393 . C T 129.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=27;Dels=0.00;FS=17.042;HaplotypeScore=19.4944;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=4;MQRankSum=3.107;QD=4.78;ReadPosRankSum=0.702;SB=-5.917e+01 GT:AD:DP:GQ:PL 1/1:20,7:27:18:162,18,0 chrXI 412 . T C 83.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=13;Dels=0.00;FS=18.543;HaplotypeScore=10.7878;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=0.849;QD=6.42;ReadPosRankSum=1.466;SB=0.453 GT:AD:DP:GQ:PL 1/1:9,4:13:12:116,12,0 chrXI 417 . T C 82.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;FS=14.771;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;MQRankSum=0.633;QD=8.25;ReadPosRankSum=0.741;SB=-1.055e+01 GT:AD:DP:GQ:PL 1/1:6,4:10:12:115,12,0 chrXI 542 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=5;QD=3.22;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:5,3:8:6:57,6,0 chrXI 547 . C A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=9;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=5;MQRankSum=0.727;QD=2.97;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,3:9:6:58,6,0 chrXI 571 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=6;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=2;MQRankSum=0.727;QD=3.47;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,3:6:6:52,6,0 chrXI 594 . A C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=1;QD=8.06;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:12:105,12,0 chrXI 595 . A G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=1;QD=7.72;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,5:9:12:102,12,0 chrXI 600 . C T 82.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=11;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=0;MQRankSum=2.637;QD=7.50;ReadPosRankSum=0.717;SB=-2.710e+01 GT:AD:DP:GQ:PL 1/1:6,5:11:12:115,12,0 chrXI 601 . G C 77.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.749;DP=11;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=0;MQRankSum=2.637;QD=7.05;ReadPosRankSum=0.387;SB=-2.410e+01 GT:AD:DP:GQ:PL 1/1:6,5:11:12:110,12,0 chrXI 610 . C T 138.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.462;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;MQRankSum=3.266;QD=8.13;ReadPosRankSum=-1.558;SB=0.191 GT:AD:DP:GQ:PL 1/1:6,11:17:18:171,18,0 chrXI 624 . T C 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.822;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;MQRankSum=4.043;QD=6.47;ReadPosRankSum=-0.788;SB=1.15 GT:AD:DP:GQ:PL 1/1:8,20:28:24:214,24,0 chrXI 633 . C T 424 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;MQRankSum=3.945;QD=13.68;ReadPosRankSum=-1.158;SB=-3.911e-03 GT:AD:DP:GQ:PL 1/1:7,24:31:48:457,48,0 chrXI 634 . A T 427 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=13.77;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:31:48:460,48,0 chrXI 639 . C T 426 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.807;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;MQRankSum=3.954;QD=11.21;ReadPosRankSum=-1.469;SB=-6.484e-03 GT:AD:DP:GQ:PL 1/1:7,31:38:48:459,48,0 chrXI 656 . C A 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4682;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=0;MQRankSum=0.200;QD=1.39;ReadPosRankSum=-5.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,23:70:99:127,0,372 chrXI 660 . T C 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.6711;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=0;MQRankSum=3.156;QD=4.53;ReadPosRankSum=5.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,41:75:99:370,0,184 chrXI 667 . G A 657 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=0;MQRankSum=0.410;QD=8.64;ReadPosRankSum=0.410;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:75:690,75,0 chrXI 673 . A G 569 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=0;QD=7.39;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:72:602,72,0 chrXI 687 . A G 577 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=0;MQRankSum=6.212;QD=6.95;ReadPosRankSum=2.305;SB=0.206 GT:AD:DP:GQ:PL 1/1:23,60:83:66:610,66,0 chrXI 689 . T A 589 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.4814;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=0;MQRankSum=1.190;QD=7.10;ReadPosRankSum=1.690;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:66:622,66,0 chrXI 704 . T C 490 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=0;QD=5.44;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:57:523,57,0 chrXI 724 . T G 205.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=33.4669;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=0;MQRankSum=0.112;QD=2.07;ReadPosRankSum=2.400;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,97:99:27:238,27,0 chrXI 725 . T C 175.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=40.5990;MLEAC=1;MLEAF=0.500;MQ=19.71;MQ0=0;MQRankSum=6.825;QD=1.62;ReadPosRankSum=-0.401;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:83,25:108:12:205,0,12 chrXI 755 . T C 633 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.599;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=2;MQRankSum=-1.944;QD=5.75;ReadPosRankSum=2.935;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,107:110:75:666,75,0 chrXI 796 . T C 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.797;DP=284;Dels=0.00;FS=7.253;HaplotypeScore=95.9989;MLEAC=1;MLEAF=0.500;MQ=33.86;MQ0=10;MQRankSum=-3.336;QD=0.57;ReadPosRankSum=-3.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,48:284:99:193,0,3556 chrXI 925 . T C 1717.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;DP=332;Dels=0.00;FS=14.129;HaplotypeScore=25.5176;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=2;MQRankSum=4.866;QD=5.17;ReadPosRankSum=2.188;SB=-3.150e+02 GT:AD:DP:GQ:PL 0/1:229,101:332:99:1747,0,3974 chrXI 951 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.271;DP=245;Dels=0.00;FS=12.931;HaplotypeScore=11.3762;MLEAC=1;MLEAF=0.500;MQ=32.63;MQ0=2;MQRankSum=-2.662;QD=0.15;ReadPosRankSum=-5.814;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:206,37:245:66:66,0,3823 chrXI 986 . C T 4739.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.565;DP=362;Dels=0.00;FS=119.240;HaplotypeScore=9.3850;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=5;MQRankSum=9.390;QD=13.09;ReadPosRankSum=7.701;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:117,244:362:32:4739,32,0 chrXI 1010 . G T 1326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.975;DP=437;Dels=0.00;FS=114.151;HaplotypeScore=17.6206;MLEAC=1;MLEAF=0.500;MQ=34.63;MQ0=4;MQRankSum=-10.171;QD=3.03;ReadPosRankSum=-1.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,191:437:99:1356,0,4453 chrXI 1012 . C T 1138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;DP=437;Dels=0.00;FS=107.873;HaplotypeScore=19.2527;MLEAC=1;MLEAF=0.500;MQ=34.46;MQ0=4;MQRankSum=-10.257;QD=2.60;ReadPosRankSum=-0.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,191:437:99:1168,0,4486 chrXI 1056 . G C 2966.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.713;DP=485;Dels=0.00;FS=51.798;HaplotypeScore=19.1154;MLEAC=1;MLEAF=0.500;MQ=30.40;MQ0=3;MQRankSum=-6.605;QD=6.12;ReadPosRankSum=2.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,269:485:99:2996,0,3899 chrXI 1067 . T C 7454.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=14.2047;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=2;MQRankSum=-0.467;QD=19.02;ReadPosRankSum=-0.691;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,387:392:99:7454,814,0 chrXI 1115 . G A 2381 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=27;QD=15.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:27,127:154:99:2414,261,0 chrXI 1118 . C G 1858 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=28;QD=13.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,112:140:99:1891,210,0 chrXI 1129 . T G 442 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=16.80;MQ0=33;QD=6.31;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:33,29:70:54:475,54,0 chrXI 1179 . T C 134.13 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=33;QD=2.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:33,24:57:18:167,18,0 chrXI 1203 . G C 202.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.809;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.43;MQ0=32;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.502;SB=-4.137e+00 GT:AD:DP:GQ:PL 1/1:30,29:62:1:231,1,0 chrXI 1212 . G A 250 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=18.00;MQ0=35;QD=3.85;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:35,30:65:30:283,30,0 chrXI 1221 . G A 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.362;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=35;MQRankSum=1.425;QD=0.79;ReadPosRankSum=2.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,14:67:83:83,0,160 chrXI 1272 . G A 45.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=56;Dels=0.00;FS=21.553;HaplotypeScore=2.7776;MLEAC=1;MLEAF=0.500;MQ=9.31;MQ0=43;MQRankSum=2.392;QD=0.80;ReadPosRankSum=-0.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,4:56:17:75,0,17 chrXI 1284 . T C 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.085;DP=57;Dels=0.00;FS=24.564;HaplotypeScore=1.7860;MLEAC=2;MLEAF=1.00;MQ=7.65;MQ0=44;MQRankSum=2.451;QD=0.47;ReadPosRankSum=-1.775;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:54,3:57:6:58,6,0 chrXI 1490 . G C 181.03 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.83;MQ0=59;QD=2.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,71:82:24:214,24,0 chrXI 1679 . T C 130.13 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=11;QD=5.42;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:163,18,0 chrXI 2198 . C G 99.26 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=3.10;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:132,15,0 chrXI 2206 . T A 243 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.133;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=-0.732;QD=6.23;ReadPosRankSum=-2.006;SB=-1.346e-02 GT:AD:DP:GQ:PL 1/1:2,37:39:30:276,30,0 chrXI 2222 . G A 373 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=-1.036;QD=7.61;ReadPosRankSum=0.429;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,47:49:42:406,42,0 chrXI 2227 . G T 361 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.355;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=0.260;QD=8.40;ReadPosRankSum=1.471;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:42:394,42,0 chrXI 2229 . A G 362 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.355;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=-0.029;QD=8.42;ReadPosRankSum=1.817;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:42:395,42,0 chrXI 2230 . A T 365 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.029;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=11.9166;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=1.298;QD=8.49;ReadPosRankSum=1.817;SB=-7.064e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:42:398,42,0 chrXI 2232 . G A 364 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.9426;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=1.238;QD=8.67;ReadPosRankSum=1.403;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:42:397,42,0 chrXI 2236 . A G 342 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.9445;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=-0.990;QD=8.14;ReadPosRankSum=1.650;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:42:375,42,0 chrXI 2254 . A G 364 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=7.74;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:42:397,42,0 chrXI 2259 . C T 368 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=8.00;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:401,42,0 chrXI 2369 . C T 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=84;Dels=0.00;FS=6.751;HaplotypeScore=10.6781;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=13;MQRankSum=0.018;QD=2.14;ReadPosRankSum=-1.510;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:57,27:84:99:210,0,661 chrXI 2391 . G T 1092.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.467;DP=159;Dels=0.00;FS=25.803;HaplotypeScore=12.8557;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=17;MQRankSum=2.847;QD=6.87;ReadPosRankSum=0.100;SB=-5.000e+02 GT:AD:DP:GQ:PL 0/1:88,71:159:99:1122,0,1364 chrXI 2428 . C G 1221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;DP=204;Dels=0.00;FS=22.909;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=34;MQRankSum=3.956;QD=5.99;ReadPosRankSum=-0.009;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:112,92:204:99:1251,0,1497 chrXI 2483 . T C 120.13 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=19;QD=2.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:52:18:153,18,0 chrXI 2492 . A G 77.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DP=33;Dels=0.00;FS=5.566;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=15.46;MQ0=12;MQRankSum=2.931;QD=2.34;ReadPosRankSum=3.262;SB=-2.608e+00 GT:AD:DP:GQ:PL 0/1:27,6:33:13:107,0,13 chrXI 2556 . T G 162.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.766;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=21.8804;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=15;MQRankSum=-0.057;QD=2.70;ReadPosRankSum=-1.217;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,25:60:99:192,0,419 chrXI 2557 . T C 162.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=21.0379;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=18;MQRankSum=-0.078;QD=2.53;ReadPosRankSum=-1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,20:64:99:192,0,445 chrXI 2565 . C T 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;DP=98;Dels=0.00;FS=2.624;HaplotypeScore=16.5264;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=24;MQRankSum=-0.641;QD=0.56;ReadPosRankSum=-1.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,24:98:85:85,0,746 chrXI 2574 . T A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.254;DP=118;Dels=0.00;FS=7.590;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=26;MQRankSum=0.264;QD=0.44;ReadPosRankSum=-1.718;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:87,31:118:82:82,0,850 chrXI 2602 . A T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=147;Dels=0.00;FS=67.375;HaplotypeScore=100.5202;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=28;MQRankSum=-0.902;QD=0.42;ReadPosRankSum=-1.144;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:95,52:147:92:92,0,1142 chrXI 2609 . C T 347.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.743;DP=150;Dels=0.00;FS=30.981;HaplotypeScore=66.9816;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=27;MQRankSum=1.223;QD=2.31;ReadPosRankSum=2.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,36:150:99:377,0,775 chrXI 2610 . T C 341.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DP=150;Dels=0.00;FS=30.687;HaplotypeScore=66.1929;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=27;MQRankSum=1.085;QD=2.27;ReadPosRankSum=2.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,36:150:99:371,0,773 chrXI 2612 . A G 465.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DP=150;Dels=0.00;FS=30.506;HaplotypeScore=66.7770;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=27;MQRankSum=2.505;QD=3.10;ReadPosRankSum=-1.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,45:150:99:495,0,639 chrXI 2624 . C T 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;DP=141;Dels=0.00;FS=95.672;HaplotypeScore=26.3429;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=23;MQRankSum=-2.218;QD=0.62;ReadPosRankSum=0.456;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:82,58:141:99:117,0,933 chrXI 2626 . T A 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.960;DP=141;Dels=0.00;FS=82.205;HaplotypeScore=47.5941;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=23;MQRankSum=-2.687;QD=0.68;ReadPosRankSum=1.016;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/1:83,58:141:99:126,0,899 chrXI 2632 . G C 397.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;DP=143;Dels=0.00;FS=50.041;HaplotypeScore=70.5140;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=24;MQRankSum=0.936;QD=2.78;ReadPosRankSum=0.125;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,36:143:99:427,0,587 chrXI 2635 . T A 405.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.161;DP=142;Dels=0.00;FS=53.544;HaplotypeScore=52.3613;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=23;MQRankSum=1.175;QD=2.85;ReadPosRankSum=-0.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,36:142:99:435,0,585 chrXI 2639 . C T 606.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=139;Dels=0.00;FS=33.814;HaplotypeScore=27.6519;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=23;MQRankSum=-2.749;QD=4.36;ReadPosRankSum=2.160;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:42,97:139:99:636,0,327 chrXI 2655 . C G 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;DP=98;Dels=0.00;FS=32.512;HaplotypeScore=19.8571;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=16;MQRankSum=-3.480;QD=2.40;ReadPosRankSum=1.538;SB=-3.550e+02 GT:AD:DP:GQ:PL 0/1:20,75:98:99:265,0,104 chrXI 2662 . T A 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=71;Dels=0.00;FS=42.501;HaplotypeScore=15.3990;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=9;MQRankSum=1.193;QD=1.52;ReadPosRankSum=-3.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,14:71:99:138,0,201 chrXI 2665 . T A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DP=64;Dels=0.00;FS=35.692;HaplotypeScore=9.2164;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=8;MQRankSum=0.335;QD=0.70;ReadPosRankSum=-3.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,9:64:75:75,0,188 chrXI 2666 . T A 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=64;Dels=0.00;FS=35.692;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=8;MQRankSum=0.178;QD=0.69;ReadPosRankSum=-3.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,9:64:74:74,0,192 chrXI 2717 . G T 215.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=39;Dels=0.00;FS=28.235;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=2;MQRankSum=0.705;QD=5.54;ReadPosRankSum=0.840;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,36:39:9:248,9,0 chrXI 2722 . C G 245 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=1;QD=6.45;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:33:278,33,0 chrXI 2731 . A G 364 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=36;Dels=0.00;FS=15.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=1;MQRankSum=1.631;QD=10.11;ReadPosRankSum=1.631;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:3,33:36:48:397,48,0 chrXI 2733 . T A 359 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=1;QD=10.56;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:48:392,48,0 chrXI 2734 . C T 364 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=1;QD=10.71;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:48:397,48,0 chrXI 2737 . G A 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=1;QD=8.72;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,37:39:45:373,45,0 chrXI 2740 . T C 364 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=1;MQRankSum=0.133;QD=9.10;ReadPosRankSum=1.644;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:48:397,48,0 chrXI 2796 . A T 466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=3;MQRankSum=1.657;QD=9.51;ReadPosRankSum=0.904;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:57:499,57,0 chrXI 2898 . G T 908 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=20.18;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:941,108,0 chrXI 2905 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;QD=23.53;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1045,108,0 chrXI 2928 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=22.24;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:967,111,0 chrXI 3393 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=25.67;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2497,258,0 chrXI 4436 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.947;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.900;QD=21.98;ReadPosRankSum=2.392;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2824,312,0 chrXI 4534 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.49;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3429,357,0 chrXI 5078 . A T 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=5.277;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.199;QD=21.71;ReadPosRankSum=1.713;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3952,420,0 chrXI 5087 . T G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.59;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3644,399,0 chrXI 5434 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.9725;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3567,375,0 chrXI 5655 . T A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3254,334,0 chrXI 5928 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.31;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3096,321,0 chrXI 6055 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.340;QD=22.58;ReadPosRankSum=1.667;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2426,261,0 chrXI 6097 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.25;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2725,279,0 chrXI 6138 . G T 2613 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.53;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2646,282,0 chrXI 6167 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.55;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2784,297,0 chrXI 6589 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=3.819;HaplotypeScore=11.5838;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.580;QD=22.52;ReadPosRankSum=1.710;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3648,417,0 chrXI 6833 . G T 4527.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.5810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4527,489,0 chrXI 7040 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=3.146;HaplotypeScore=10.8412;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.213;QD=22.79;ReadPosRankSum=1.656;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5197,561,0 chrXI 7552 . A T 2391 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=22.77;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2424,258,0 chrXI 7556 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=22.43;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2343,252,0 chrXI 7571 . T A 2449 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=23.55;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2482,255,0 chrXI 7595 . C T 1841 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.23;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1874,204,0 chrXI 7651 . A C 840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=58.0557;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=-1.199;QD=12.92;ReadPosRankSum=1.679;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:873,99,0 chrXI 7664 . A T 138.13 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=41.6591;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=2.38;SB=-7.591e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:18:171,18,0 chrXI 7691 . C T 721 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4652;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=12.65;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:78:754,78,0 chrXI 7704 . A G 729 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=11.95;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:762,81,0 chrXI 7717 . G A 586 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=11.49;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:619,69,0 chrXI 7726 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=13.71;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:705,72,0 chrXI 7940 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=5.842;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.645;QD=21.80;ReadPosRankSum=1.703;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2671,306,0 chrXI 8044 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.52;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3433,360,0 chrXI 8079 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.7381;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.12;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3884,409,0 chrXI 8174 . G C 4281.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.46;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4281,465,0 chrXI 8204 . C G 3070 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.62;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3103,342,0 chrXI 8305 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.50;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2642,291,0 chrXI 8317 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=138;Dels=0.00;FS=2.591;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.257;QD=16.01;ReadPosRankSum=2.919;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2243,249,0 chrXI 8368 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.8860;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.74;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2619,276,0 chrXI 8566 . A T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.13;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3619,384,0 chrXI 8651 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.50;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2913,312,0 chrXI 8716 . T G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.091;QD=24.61;ReadPosRankSum=1.655;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3322,354,0 chrXI 8828 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=3.049;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-2.338;QD=23.01;ReadPosRankSum=2.360;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2564,294,0 chrXI 8855 . T C 2923 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.98;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2956,315,0 chrXI 8856 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=25.59;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3002,318,0 chrXI 8893 . A C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=2.638;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-2.087;QD=22.27;ReadPosRankSum=2.409;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2750,306,0 chrXI 8980 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4005;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.53;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2780,285,0 chrXI 9055 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.087;QD=22.67;ReadPosRankSum=1.662;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2300,249,0 chrXI 9262 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.275;QD=25.18;ReadPosRankSum=1.667;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:4054,435,0 chrXI 9915 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3488,361,0 chrXI 10393 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6141;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.30;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2642,285,0 chrXI 10540 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.780;QD=21.56;ReadPosRankSum=1.679;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2858,321,0 chrXI 10550 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.44;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2885,303,0 chrXI 10762 . A G 5533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=229;Dels=0.00;FS=7.449;HaplotypeScore=18.0001;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.416;QD=24.16;ReadPosRankSum=2.385;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5533,592,0 chrXI 10969 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=183;Dels=0.00;FS=6.966;HaplotypeScore=18.8814;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.290;QD=22.87;ReadPosRankSum=2.422;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4186,459,0 chrXI 11657 . A C 4263.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.22;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4263,459,0 chrXI 11792 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.69;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2994,318,0 chrXI 11938 . G T 53.97 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=110.3824;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=0.44;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:9:86,9,0 chrXI 12060 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.04;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2890,303,0 chrXI 12080 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.87;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2833,324,0 chrXI 12136 . T A 2484 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.41;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2517,279,0 chrXI 12137 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=20.85;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2660,282,0 chrXI 12224 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.80;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3570,390,0 chrXI 12256 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.31;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3800,400,0 chrXI 12271 . G T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.43;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3289,357,0 chrXI 12322 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.18;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2657,291,0 chrXI 12346 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.38;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2428,267,0 chrXI 12369 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.05;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2613,297,0 chrXI 12437 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=23.72;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3140,327,0 chrXI 12451 . A C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=4.298;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.261;QD=20.19;ReadPosRankSum=1.119;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2315,237,0 chrXI 12460 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=21.67;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2482,258,0 chrXI 12525 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.316;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.891;QD=20.73;ReadPosRankSum=1.564;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2210,255,0 chrXI 12560 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=21.51;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2421,252,0 chrXI 12572 . T G 2129 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=18.84;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2162,243,0 chrXI 12606 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=3.049;HaplotypeScore=9.8431;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-1.392;QD=16.68;ReadPosRankSum=2.407;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1934,210,0 chrXI 12620 . A G 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.01;FS=3.584;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-0.214;QD=14.73;ReadPosRankSum=1.666;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1609,177,0 chrXI 12646 . T C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.353;QD=19.71;ReadPosRankSum=1.698;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2063,225,0 chrXI 12708 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=19.54;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2691,294,0 chrXI 12724 . A G 2480 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=17.34;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2513,282,0 chrXI 12741 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=4.250;HaplotypeScore=3.5087;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.221;QD=17.09;ReadPosRankSum=1.662;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2580,288,0 chrXI 12770 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=16.92;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2621,285,0 chrXI 12868 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.461;QD=22.78;ReadPosRankSum=1.669;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3805,420,0 chrXI 13003 . G C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.39;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3673,408,0 chrXI 13039 . C G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.76;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4185,459,0 chrXI 13115 . T G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=24.25;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3516,387,0 chrXI 13223 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.37;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4246,442,0 chrXI 13282 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.89;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2519,285,0 chrXI 13310 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=22.23;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2500,258,0 chrXI 13330 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.25;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2463,270,0 chrXI 13362 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=6.368;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.373;QD=19.70;ReadPosRankSum=1.705;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2594,276,0 chrXI 13378 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.951;QD=18.96;ReadPosRankSum=2.411;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2479,273,0 chrXI 13443 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.03;FS=3.887;HaplotypeScore=28.1120;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.695;QD=21.56;ReadPosRankSum=1.695;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2103,228,0 chrXI 13542 . A C 1951 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=22.69;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1984,219,0 chrXI 13635 . A T 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.501;QD=22.23;ReadPosRankSum=1.578;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2034,213,0 chrXI 13712 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.64;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2370,252,0 chrXI 13729 . T G 1947 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.87;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1980,219,0 chrXI 13813 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.63;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2694,288,0 chrXI 13945 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.75;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:3053,315,0 chrXI 13973 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.60;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2949,318,0 chrXI 14122 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.99;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3200,342,0 chrXI 14280 . G C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.7814;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.34;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3254,354,0 chrXI 14320 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=23.78;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3543,381,0 chrXI 14350 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.407;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.639;QD=18.92;ReadPosRankSum=1.709;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2852,324,0 chrXI 14360 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=8.549;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.074;QD=18.57;ReadPosRankSum=2.367;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2819,303,0 chrXI 14361 . A T 2813 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.27;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2846,303,0 chrXI 14438 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=4.682;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.347;QD=21.12;ReadPosRankSum=1.660;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3074,354,0 chrXI 14550 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6531;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.63;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3688,393,0 chrXI 14569 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.68;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3674,390,0 chrXI 14729 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.412;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.002;QD=22.26;ReadPosRankSum=1.685;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3295,360,0 chrXI 15132 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=4.017;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.344;QD=25.26;ReadPosRankSum=1.702;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2988,318,0 chrXI 15715 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.87;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1771,186,0 chrXI 15842 . A G 498 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-0.706;QD=18.44;ReadPosRankSum=1.605;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:57:531,57,0 chrXI 15843 . A G 473 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=18.19;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:506,57,0 chrXI 15848 . A G 477 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=-1.250;QD=17.67;ReadPosRankSum=2.268;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:2,25:27:54:510,54,0 chrXI 16419 . A G 2908 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.93;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2941,312,0 chrXI 16458 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=116;Dels=0.00;FS=2.595;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.400;QD=21.82;ReadPosRankSum=2.887;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2564,285,0 chrXI 16472 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.54;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3235,342,0 chrXI 16537 . T A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.90;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3779,394,0 chrXI 16671 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.06;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2792,303,0 chrXI 16677 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.216;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.533;QD=20.97;ReadPosRankSum=1.679;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2759,303,0 chrXI 16703 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.450;QD=21.27;ReadPosRankSum=1.705;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2755,297,0 chrXI 16782 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.226;QD=24.22;ReadPosRankSum=1.702;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2818,306,0 chrXI 16794 . T A 2783 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.99;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2816,297,0 chrXI 16846 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.17;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2627,282,0 chrXI 16866 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.95;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2672,288,0 chrXI 16973 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.15;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2713,294,0 chrXI 17068 . A C 2900 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.58;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2933,324,0 chrXI 17135 . T A 2525 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.35;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2558,267,0 chrXI 17740 . A T 5159.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1452;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.77;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5159,555,0 chrXI 18187 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2994,312,0 chrXI 19335 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=22.44;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2142,240,0 chrXI 19367 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=24.30;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1977,204,0 chrXI 19379 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=58.9570;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=22.53;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1948,201,0 chrXI 19443 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=17.76;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1649,174,0 chrXI 19447 . T G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=-0.400;QD=17.37;ReadPosRankSum=1.694;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1614,177,0 chrXI 19491 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=0;QD=17.60;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1670,171,0 chrXI 19503 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;MQRankSum=-1.074;QD=14.53;ReadPosRankSum=1.644;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1181,135,0 chrXI 19521 . C T 822 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=12.65;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:855,87,0 chrXI 19529 . C T 620 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=11.07;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:653,72,0 chrXI 19537 . C G 640 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=13.06;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:673,72,0 chrXI 19538 . G A 620 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=12.65;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:653,69,0 chrXI 19563 . C T 374 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=11.33;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:407,42,0 chrXI 19629 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.84;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1157,120,0 chrXI 19632 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=18.02;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1150,123,0 chrXI 19657 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=19.29;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1383,150,0 chrXI 19902 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1918,201,0 chrXI 19942 . T G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=114;Dels=0.00;FS=12.424;HaplotypeScore=8.4177;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.996;QD=23.21;ReadPosRankSum=3.764;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:5,109:114:99:2679,297,0 chrXI 20014 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.45;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2401,264,0 chrXI 20209 . G A 129.13 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=58.2419;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=1.57;SB=-7.421e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:18:162,18,0 chrXI 20275 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.62;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2368,252,0 chrXI 20395 . C G 4353.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=26.71;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4353,463,0 chrXI 20424 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=4.329;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.340;QD=25.77;ReadPosRankSum=1.711;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4329,468,0 chrXI 20462 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.911;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.262;QD=19.97;ReadPosRankSum=2.405;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3275,369,0 chrXI 20476 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=6.529;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;MQRankSum=0.729;QD=18.47;ReadPosRankSum=2.384;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2804,306,0 chrXI 20503 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.225;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;MQRankSum=-1.066;QD=17.07;ReadPosRankSum=2.417;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2611,279,0 chrXI 20567 . A T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.1392;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=21.57;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4529,472,0 chrXI 20616 . G A 5365.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=23.53;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5365,588,0 chrXI 20761 . T C 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=223;Dels=0.00;FS=6.564;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=1.261;QD=21.14;ReadPosRankSum=2.417;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4714,516,0 chrXI 20802 . A T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=18.55;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4210,450,0 chrXI 20805 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=17.22;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:3944,444,0 chrXI 20824 . A T 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=6.454;HaplotypeScore=4.3915;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.254;QD=14.94;ReadPosRankSum=2.377;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:3555,390,0 chrXI 20841 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=15.33;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:3542,364,0 chrXI 21006 . C G 3638.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=21.40;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3638,405,0 chrXI 21193 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.05;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.73;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1505,159,0 chrXI 21194 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.74;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1523,165,0 chrXI 21250 . A T 71.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=83;Dels=0.01;FS=7.986;HaplotypeScore=73.6209;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.286;QD=0.86;ReadPosRankSum=2.390;SB=-8.525e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:12:104,12,0 chrXI 21328 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=18.8441;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.70;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2654,273,0 chrXI 21391 . T C 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=5.400;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.391;QD=22.90;ReadPosRankSum=2.934;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2460,267,0 chrXI 21546 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.372;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.409;QD=22.31;ReadPosRankSum=1.709;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3347,366,0 chrXI 21568 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=145;Dels=0.00;FS=2.864;HaplotypeScore=10.0377;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.043;QD=20.05;ReadPosRankSum=2.364;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2940,321,0 chrXI 21855 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.56;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2912,318,0 chrXI 21870 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.76;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2547,273,0 chrXI 22075 . G T 316 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=4.94;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:36:349,36,0 chrXI 22082 . G A 395 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=5.72;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:45:428,45,0 chrXI 22088 . C T 632 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=8.54;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:665,69,0 chrXI 22120 . T G 1665 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=17.34;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1698,183,0 chrXI 22343 . G A 4466.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=25.52;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4466,460,0 chrXI 22917 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.7505;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.11;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5690,592,0 chrXI 23064 . C T 4538.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.2147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4538,495,0 chrXI 23463 . T C 6073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=273;Dels=0.00;FS=3.026;HaplotypeScore=11.2677;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=2.044;QD=22.25;ReadPosRankSum=2.350;SB=-3.524e+03 GT:AD:DP:GQ:PL 1/1:2,270:273:99:6073,669,0 chrXI 24181 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=22.35;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3139,360,0 chrXI 24282 . A G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;MQRankSum=-1.166;QD=17.32;ReadPosRankSum=1.699;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1834,204,0 chrXI 24291 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=15.83;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1774,195,0 chrXI 24307 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=13.58;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1690,183,0 chrXI 24311 . A T 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=1.164;QD=13.44;ReadPosRankSum=1.704;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1673,174,0 chrXI 24330 . A C 1000 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.781;DP=116;Dels=0.00;FS=1.394;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-0.605;QD=8.62;ReadPosRankSum=4.473;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:8,108:116:99:1033,129,0 chrXI 24332 . T G 427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;DP=116;Dels=0.00;FS=1.394;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-0.038;QD=3.68;ReadPosRankSum=4.701;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:8,108:116:63:460,63,0 chrXI 24333 . G T 427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.287;DP=116;Dels=0.00;FS=1.394;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=0.398;QD=3.68;ReadPosRankSum=4.701;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:8,108:116:63:460,63,0 chrXI 24349 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=12.50;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1683,174,0 chrXI 24357 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.198;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=1.586;QD=11.89;ReadPosRankSum=1.708;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1721,183,0 chrXI 24373 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=12.78;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:1899,207,0 chrXI 24425 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=3.031;HaplotypeScore=101.6477;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=0.704;QD=17.30;ReadPosRankSum=2.412;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2299,243,0 chrXI 24438 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=133;Dels=0.00;FS=8.807;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-2.259;QD=0.13;ReadPosRankSum=3.366;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:6:49,6,0 chrXI 24444 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=17.89;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2555,267,0 chrXI 24924 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.051;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.505;QD=21.01;ReadPosRankSum=1.635;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2323,264,0 chrXI 25154 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.82;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1833,192,0 chrXI 25337 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=23.56;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3722,393,0 chrXI 25349 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.321;QD=21.42;ReadPosRankSum=2.357;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3405,364,0 chrXI 25386 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0830;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.85;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3223,351,0 chrXI 25508 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=4.016;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.151;QD=19.56;ReadPosRankSum=1.713;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3502,384,0 chrXI 25610 . T G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.508;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.960;QD=22.90;ReadPosRankSum=1.688;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3618,402,0 chrXI 26043 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4151,447,0 chrXI 26078 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.69;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3753,399,0 chrXI 26422 . A G 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=0.800;QD=21.90;ReadPosRankSum=1.666;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1172,132,0 chrXI 26450 . T G 1069 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=23.76;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1102,120,0 chrXI 26672 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1285,138,0 chrXI 26709 . C A 1684 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.41;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1717,177,0 chrXI 26730 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.639;QD=20.77;ReadPosRankSum=2.382;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1549,171,0 chrXI 26749 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.46;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1676,198,0 chrXI 26810 . A T 1980 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.00;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2013,222,0 chrXI 27028 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.75;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3981,432,0 chrXI 27643 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2364,258,0 chrXI 28033 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.941;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.361;QD=23.50;ReadPosRankSum=2.385;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3595,387,0 chrXI 28267 . T C 4732.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4732,510,0 chrXI 28300 . G C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4198,459,0 chrXI 28372 . A T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.84;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4570,481,0 chrXI 28396 . C T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.46;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:4178,439,0 chrXI 28399 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.08;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4201,433,0 chrXI 28487 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8307;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.32;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,378,0 chrXI 28551 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=3.418;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.103;QD=22.60;ReadPosRankSum=1.706;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3107,339,0 chrXI 29269 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8687;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.84;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3710,417,0 chrXI 29485 . G A 4934.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.97;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4934,540,0 chrXI 29650 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=2.671;HaplotypeScore=10.0400;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.140;QD=22.88;ReadPosRankSum=2.396;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4232,468,0 chrXI 29680 . G A 5108.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.16;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5108,538,0 chrXI 29889 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.21;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2963,327,0 chrXI 29986 . A G 2734 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.87;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2767,294,0 chrXI 30016 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.568;QD=18.07;ReadPosRankSum=1.704;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2237,240,0 chrXI 30025 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.58;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2231,234,0 chrXI 30028 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=17.51;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2239,228,0 chrXI 30052 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.77;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2163,225,0 chrXI 30359 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=7.888;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.345;QD=22.90;ReadPosRankSum=2.353;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3550,402,0 chrXI 30716 . T G 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.132;QD=23.85;ReadPosRankSum=2.237;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4674,516,0 chrXI 30923 . A C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.294;QD=23.85;ReadPosRankSum=1.703;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2871,312,0 chrXI 31042 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1697,186,0 chrXI 31094 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2515,270,0 chrXI 31185 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2620,285,0 chrXI 31220 . G T 2609 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2642,282,0 chrXI 31754 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3753,402,0 chrXI 32054 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.87;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3659,387,0 chrXI 32204 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=163;Dels=0.00;FS=4.938;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.882;QD=19.83;ReadPosRankSum=1.710;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3265,348,0 chrXI 32212 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.49;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3086,333,0 chrXI 32644 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3239,351,0 chrXI 32862 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3723,420,0 chrXI 32956 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0742;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.76;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4257,445,0 chrXI 33219 . C G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3317,363,0 chrXI 33673 . G A 5485.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=25.0538;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.85;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,224:230:99:5485,586,0 chrXI 33790 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4679,484,0 chrXI 34302 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2613,276,0 chrXI 37524 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=192;Dels=0.00;FS=5.864;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.899;QD=19.23;ReadPosRankSum=2.963;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,186:192:99:3692,414,0 chrXI 37530 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=18.92;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3576,393,0 chrXI 37551 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=4.303;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=0.137;QD=15.85;ReadPosRankSum=1.715;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3265,372,0 chrXI 37566 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=15.94;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3315,357,0 chrXI 37590 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=17.70;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3947,415,0 chrXI 37740 . T G 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=242;Dels=0.00;FS=3.410;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.602;QD=23.15;ReadPosRankSum=1.718;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5603,609,0 chrXI 37956 . G A 5509.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=24.93;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5509,574,0 chrXI 37995 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=19.94;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4167,439,0 chrXI 37998 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=19.49;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4053,429,0 chrXI 38007 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=212;Dels=0.00;FS=9.141;HaplotypeScore=4.0535;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-1.509;QD=16.18;ReadPosRankSum=3.394;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:3430,393,0 chrXI 38034 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.184;QD=17.43;ReadPosRankSum=-1.604;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:3800,411,0 chrXI 38261 . A G 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=214;Dels=0.00;FS=11.102;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=2.266;QD=21.23;ReadPosRankSum=2.929;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:3,209:214:99:4543,501,0 chrXI 38472 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.23;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4019,435,0 chrXI 38813 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8659;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.04;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4193,450,0 chrXI 39127 . G C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.49;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3509,387,0 chrXI 39160 . G T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.01;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3565,370,0 chrXI 39184 . C G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.92;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3420,381,0 chrXI 39899 . A T 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.554;QD=23.88;ReadPosRankSum=1.686;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3582,378,0 chrXI 40023 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.03;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3748,399,0 chrXI 40080 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.75;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4275,471,0 chrXI 40092 . G T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.02;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4190,439,0 chrXI 40103 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.02;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3825,429,0 chrXI 40164 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.69;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3381,357,0 chrXI 40206 . C G 4040.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1188;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.82;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,172:177:99:4040,444,0 chrXI 40356 . A T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.74;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3860,408,0 chrXI 40479 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.996;QD=23.98;ReadPosRankSum=1.667;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3885,426,0 chrXI 40860 . T A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.99;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3495,372,0 chrXI 40941 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.70;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3809,429,0 chrXI 40977 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.73;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3649,379,0 chrXI 40989 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.19;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:2955,333,0 chrXI 40998 . C G 2664 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.41;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2697,303,0 chrXI 41115 . C A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.77;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3945,432,0 chrXI 41369 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.93;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3811,391,0 chrXI 41442 . C T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3843,411,0 chrXI 41490 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5785;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.09;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3243,351,0 chrXI 41527 . G T 2871 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.92;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2904,306,0 chrXI 41535 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8898;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.96;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2968,309,0 chrXI 41601 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.06;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3002,315,0 chrXI 42021 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.20;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2308,246,0 chrXI 42093 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.92;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1195,129,0 chrXI 42198 . A T 1376 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1409,150,0 chrXI 42210 . A G 1259 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.209;QD=23.75;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1292,138,0 chrXI 42424 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=25.70;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1575,171,0 chrXI 42450 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1929,192,0 chrXI 42555 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=24.54;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2487,288,0 chrXI 42588 . T C 2816 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.47;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2849,318,0 chrXI 42738 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.5120;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.02;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3589,399,0 chrXI 42757 . C G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.45;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3412,366,0 chrXI 42807 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=122;Dels=0.00;FS=5.557;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.256;QD=18.45;ReadPosRankSum=2.943;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2284,261,0 chrXI 42834 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.412;QD=18.65;ReadPosRankSum=1.666;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1991,222,0 chrXI 42835 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.859;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.308;QD=19.50;ReadPosRankSum=1.635;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2119,228,0 chrXI 43005 . C T 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.541;QD=22.78;ReadPosRankSum=-0.143;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2516,270,0 chrXI 43195 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3812,403,0 chrXI 43241 . G T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.0345;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4453,474,0 chrXI 43368 . G A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4802,537,0 chrXI 43451 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=207;Dels=0.00;FS=7.516;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.316;QD=22.85;ReadPosRankSum=2.390;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4730,531,0 chrXI 43498 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=4.434;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.112;QD=23.03;ReadPosRankSum=1.713;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4283,462,0 chrXI 43629 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.20;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4090,435,0 chrXI 43668 . A T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3364,366,0 chrXI 44246 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.241;QD=23.66;ReadPosRankSum=1.708;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3336,357,0 chrXI 44293 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2491,261,0 chrXI 44298 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.50;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2554,267,0 chrXI 44334 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.61;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2269,240,0 chrXI 44336 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.809;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.374;QD=17.65;ReadPosRankSum=1.677;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2239,240,0 chrXI 44440 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.33;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4256,445,0 chrXI 44573 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.51;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3646,393,0 chrXI 44681 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4421,474,0 chrXI 45141 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.65;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2389,261,0 chrXI 45213 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.657;QD=19.82;ReadPosRankSum=1.672;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2332,264,0 chrXI 45217 . G T 2430 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.32;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2463,252,0 chrXI 45238 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.85;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2493,255,0 chrXI 45375 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.093;QD=23.89;ReadPosRankSum=1.653;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3162,342,0 chrXI 45525 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.71;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4220,468,0 chrXI 45578 . T G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.9248;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.73;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3614,396,0 chrXI 45765 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.039;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.132;QD=24.12;ReadPosRankSum=2.368;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2952,315,0 chrXI 46074 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.17;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4727,487,0 chrXI 46101 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.3604;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.74;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4282,454,0 chrXI 46134 . T G 5017.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.12;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5017,543,0 chrXI 46275 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.74;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3443,363,0 chrXI 46282 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.81;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3380,351,0 chrXI 46444 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.68;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2613,288,0 chrXI 46587 . A C 656 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.174;QD=20.50;ReadPosRankSum=1.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:81:689,81,0 chrXI 46608 . C T 721 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:84:754,84,0 chrXI 46631 . T G 855 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:96:888,96,0 chrXI 46715 . A T 138.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=9.294;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;MQRankSum=-1.123;QD=8.13;ReadPosRankSum=1.531;SB=-2.914e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:18:171,18,0 chrXI 46718 . G A 136.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=6.81;SB=-2.914e+01 GT:AD:DP:GQ:PL 1/1:0,18:20:18:169,18,0 chrXI 46843 . C T 530 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.38;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:563,60,0 chrXI 46848 . C A 517 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:550,57,0 chrXI 46850 . T G 512 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:545,60,0 chrXI 46912 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.28;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1303,135,0 chrXI 46995 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.591;QD=23.19;ReadPosRankSum=1.693;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2074,225,0 chrXI 47023 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.90;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1993,213,0 chrXI 47201 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.194;QD=24.25;ReadPosRankSum=1.668;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3929,432,0 chrXI 47225 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.86;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3922,403,0 chrXI 47231 . A C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=4.002;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.194;QD=19.18;ReadPosRankSum=1.679;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3797,414,0 chrXI 47241 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=3.823;HaplotypeScore=9.7781;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.211;QD=18.40;ReadPosRankSum=1.715;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:3771,417,0 chrXI 47357 . C T 6115.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.0500;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.66;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6115,643,0 chrXI 47435 . A T 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.8060;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=1.084;QD=23.42;ReadPosRankSum=1.499;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5832,619,0 chrXI 47481 . A G 5558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=237;Dels=0.00;FS=9.085;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.271;QD=23.45;ReadPosRankSum=2.326;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:4,231:237:99:5558,573,0 chrXI 47531 . G A 5735.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=20.0928;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.40;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5735,607,0 chrXI 47705 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3351;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.155;QD=23.23;ReadPosRankSum=1.696;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4484,507,0 chrXI 47837 . G A 4819.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.46;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4819,514,0 chrXI 48319 . A G 6695.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=23.4510;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.93;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:6695,727,0 chrXI 48391 . G T 6703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=18.9981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.342;QD=24.11;ReadPosRankSum=0.687;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:1,274:278:99:6703,700,0 chrXI 48477 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=2.916;HaplotypeScore=13.3046;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.776;QD=23.56;ReadPosRankSum=2.313;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:5089,549,0 chrXI 48522 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.25;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4806,502,0 chrXI 48601 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.1628;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.23;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4373,483,0 chrXI 48808 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2160;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.51;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4633,487,0 chrXI 49741 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.75;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3373,366,0 chrXI 49819 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2204,228,0 chrXI 50038 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0345;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.66;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3999,418,0 chrXI 50257 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8565;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.30;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4277,445,0 chrXI 50395 . T G 2616 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.95;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2649,300,0 chrXI 50810 . C T 559 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:63:592,63,0 chrXI 51472 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.42;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2781,297,0 chrXI 51512 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.30;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2892,312,0 chrXI 51558 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3139,321,0 chrXI 52588 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=2.838;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.770;QD=23.60;ReadPosRankSum=2.390;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2936,318,0 chrXI 52628 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2815,297,0 chrXI 53112 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.625;QD=23.15;ReadPosRankSum=1.684;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3334,360,0 chrXI 53379 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:90:794,90,0 chrXI 53539 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1768,186,0 chrXI 53931 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;DP=125;Dels=0.00;FS=2.963;HaplotypeScore=11.3582;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.570;QD=21.53;ReadPosRankSum=1.270;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2724,294,0 chrXI 54204 . T C 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.310;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.773;QD=23.28;ReadPosRankSum=1.714;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4586,519,0 chrXI 54360 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.1556;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.17;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4012,429,0 chrXI 54420 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.463;QD=21.65;ReadPosRankSum=1.702;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2588,279,0 chrXI 55092 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.80;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4491,469,0 chrXI 55108 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.48;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4145,450,0 chrXI 55185 . T A 4954.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.5092;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.94;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4954,526,0 chrXI 55837 . A T 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.637;QD=23.86;ReadPosRankSum=1.710;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3699,408,0 chrXI 56302 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.72;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3961,406,0 chrXI 56757 . A T 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.649;QD=23.17;ReadPosRankSum=1.682;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4842,508,0 chrXI 58986 . C A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5728;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.51;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3823,402,0 chrXI 59004 . T A 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.519;QD=22.65;ReadPosRankSum=1.710;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3579,375,0 chrXI 59136 . A C 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=212;Dels=0.00;FS=3.027;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.087;QD=22.67;ReadPosRankSum=2.426;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4807,528,0 chrXI 59178 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=211;Dels=0.00;FS=6.083;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.499;QD=23.29;ReadPosRankSum=2.426;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4915,531,0 chrXI 59361 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6542;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4451,489,0 chrXI 59582 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4174,439,0 chrXI 59637 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.486;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=20.61;ReadPosRankSum=1.675;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3793,408,0 chrXI 59730 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.3190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.646;QD=21.82;ReadPosRankSum=1.680;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4386,466,0 chrXI 59823 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.583;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.440;QD=23.31;ReadPosRankSum=1.654;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4150,450,0 chrXI 59874 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.89;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4029,447,0 chrXI 60173 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2752,288,0 chrXI 60228 . A G 3162 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3195,345,0 chrXI 60438 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.310;QD=23.13;ReadPosRankSum=1.621;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3631,408,0 chrXI 61076 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3417,355,0 chrXI 61338 . G C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3470,390,0 chrXI 61541 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3456,369,0 chrXI 62225 . C A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.40;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3393,351,0 chrXI 62229 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=5.681;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.322;QD=21.61;ReadPosRankSum=2.952;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3209,351,0 chrXI 62759 . T C 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=226;Dels=0.00;FS=3.028;HaplotypeScore=13.4002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.511;QD=23.35;ReadPosRankSum=2.428;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5277,568,0 chrXI 63297 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.21;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3691,387,0 chrXI 63504 . G C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6397;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.54;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3558,381,0 chrXI 63525 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.439;QD=20.72;ReadPosRankSum=1.679;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2726,312,0 chrXI 63630 . A C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.070;QD=22.87;ReadPosRankSum=1.692;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3957,438,0 chrXI 63649 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=4.018;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.953;QD=21.43;ReadPosRankSum=1.691;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3665,414,0 chrXI 63943 . C G 2329 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.17;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2362,270,0 chrXI 63975 . G A 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;MQRankSum=1.065;QD=16.18;ReadPosRankSum=0.052;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1295,135,0 chrXI 63984 . C T 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;MQRankSum=0.983;QD=16.25;ReadPosRankSum=-1.018;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:99:992,105,0 chrXI 63999 . C G 464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.003;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=1.570;QD=12.21;ReadPosRankSum=-1.516;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:3,35:38:57:497,57,0 chrXI 64001 . G T 481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;MQRankSum=-0.918;QD=13.00;ReadPosRankSum=-1.474;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:54:514,54,0 chrXI 64023 . A C 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.386;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;MQRankSum=-1.003;QD=3.77;ReadPosRankSum=2.392;SB=-1.397e+01 GT:AD:DP:GQ:PL 1/1:4,9:13:9:81,9,0 chrXI 64025 . T G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.849;DP=12;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=-0.740;QD=1.90;ReadPosRankSum=2.034;SB=-1.476e+01 GT:AD:DP:GQ:PL 1/1:3,9:12:6:54,6,0 chrXI 64059 . C T 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=0.426;QD=3.04;ReadPosRankSum=-0.640;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:5,19:24:61:103,0,61 chrXI 64062 . T C 135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=30;Dels=0.00;FS=6.163;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=0;MQRankSum=-0.492;QD=4.50;ReadPosRankSum=0.633;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:8,22:30:54:165,0,54 chrXI 64092 . A C 747 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=14.37;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:52:87:780,87,0 chrXI 64094 . T G 654.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.839;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=0.891;QD=11.69;ReadPosRankSum=-3.505;SB=-3.815e+02 GT:AD:DP:GQ:PL 1/1:5,51:56:10:687,10,0 chrXI 64101 . A C 1053 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=15.49;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1086,117,0 chrXI 64203 . T C 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.199;DP=183;Dels=0.00;FS=19.389;HaplotypeScore=50.4620;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=0;MQRankSum=-4.378;QD=0.48;ReadPosRankSum=-2.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,37:183:99:118,0,2349 chrXI 64224 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.298;DP=232;Dels=0.00;FS=37.904;HaplotypeScore=90.9397;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=1.105;QD=16.56;ReadPosRankSum=4.858;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:22,209:232:99:3842,368,0 chrXI 64248 . C T 615.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=258;Dels=0.01;FS=2.704;HaplotypeScore=20.2818;MLEAC=1;MLEAF=0.500;MQ=45.08;MQ0=0;MQRankSum=1.382;QD=2.38;ReadPosRankSum=1.004;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:190,65:256:99:645,0,2885 chrXI 64251 . T C 453.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;DP=262;Dels=0.00;FS=1.345;HaplotypeScore=21.0705;MLEAC=1;MLEAF=0.500;MQ=45.46;MQ0=0;MQRankSum=3.046;QD=1.73;ReadPosRankSum=-0.370;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:213,49:262:99:483,0,3097 chrXI 64254 . C T 533.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.632;DP=269;Dels=0.00;FS=5.443;HaplotypeScore=23.3818;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=0;MQRankSum=1.354;QD=1.98;ReadPosRankSum=-2.079;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:205,64:269:99:563,0,3055 chrXI 64260 . C T 3308.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.751;DP=270;Dels=0.00;FS=1.247;HaplotypeScore=18.3714;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=0;MQRankSum=0.556;QD=12.25;ReadPosRankSum=4.110;SB=-1.710e+03 GT:AD:DP:GQ:PL 0/1:57,213:270:99:3308,0,488 chrXI 64560 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.378;QD=19.68;ReadPosRankSum=1.705;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2532,282,0 chrXI 64563 . A T 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.335;QD=19.99;ReadPosRankSum=1.676;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2512,273,0 chrXI 64590 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.712;QD=20.72;ReadPosRankSum=1.705;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2706,288,0 chrXI 64785 . T C 2803 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.07;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2836,321,0 chrXI 64947 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2768,288,0 chrXI 65567 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.83;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4469,469,0 chrXI 65661 . A G 5310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.503;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9853;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.997;QD=24.81;ReadPosRankSum=0.163;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5310,543,0 chrXI 65922 . A G 4949.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.9129;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.13;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4949,526,0 chrXI 66027 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3375,351,0 chrXI 66073 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.882;QD=22.07;ReadPosRankSum=1.711;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3597,373,0 chrXI 66879 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4820;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4023,426,0 chrXI 67862 . C G 1888 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.90;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1921,213,0 chrXI 67872 . C G 1845 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.96;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1878,201,0 chrXI 68129 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.1698;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.555;QD=21.79;ReadPosRankSum=2.942;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2670,291,0 chrXI 72112 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2701,294,0 chrXI 72614 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.503;QD=21.87;ReadPosRankSum=1.707;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3007,339,0 chrXI 73999 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.89;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3559,390,0 chrXI 74052 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7314;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=16.27;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2034,231,0 chrXI 74086 . C T 704 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=10.06;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:737,78,0 chrXI 74090 . G C 688 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=10.58;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:78:721,78,0 chrXI 74091 . C T 712 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=10.95;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:78:745,78,0 chrXI 74093 . G A 692 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=10.48;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:78:725,78,0 chrXI 74103 . C A 972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.6955;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=10.57;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1005,105,0 chrXI 74157 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.811;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-0.401;QD=15.88;ReadPosRankSum=2.361;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2225,249,0 chrXI 74163 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=17.12;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2413,261,0 chrXI 74223 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=0.049;QD=16.74;ReadPosRankSum=1.667;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1824,195,0 chrXI 74235 . A T 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-0.466;QD=16.34;ReadPosRankSum=1.695;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1553,165,0 chrXI 74275 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=64.3439;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=18.00;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1365,144,0 chrXI 74287 . A G 105.26 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=1.37;SB=-8.733e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:15:138,15,0 chrXI 74295 . A T 1511 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=17.57;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1544,168,0 chrXI 74347 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=22.99;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3159,330,0 chrXI 74375 . C G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=22.45;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3278,351,0 chrXI 74502 . A C 2735 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=22.98;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2768,300,0 chrXI 74535 . T A 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;MQRankSum=-0.598;QD=16.50;ReadPosRankSum=1.701;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1897,207,0 chrXI 74537 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=16.05;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1782,192,0 chrXI 74561 . G T 1506 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=14.76;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1539,165,0 chrXI 74599 . T C 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.159;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=0.136;QD=16.32;ReadPosRankSum=1.693;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1502,156,0 chrXI 74603 . A C 1450 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=15.10;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1483,162,0 chrXI 74756 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=23.51;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1820,192,0 chrXI 74922 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DP=123;Dels=0.00;FS=1.327;HaplotypeScore=219.4622;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=0;MQRankSum=0.136;QD=0.27;ReadPosRankSum=-6.372;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:106,17:123:63:63,0,64 chrXI 74941 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.99;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2138,234,0 chrXI 75013 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3732,405,0 chrXI 76124 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=209;Dels=0.00;FS=20.048;HaplotypeScore=17.4194;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.148;QD=21.53;ReadPosRankSum=3.418;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:4,202:209:99:4499,519,0 chrXI 76522 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.7816;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4112,459,0 chrXI 76804 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.21;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4441,474,0 chrXI 76914 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.12;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3907,429,0 chrXI 77001 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.6825;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.198;QD=22.87;ReadPosRankSum=1.707;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3235,345,0 chrXI 77002 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.756;QD=22.35;ReadPosRankSum=1.659;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3207,342,0 chrXI 77172 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.45;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3360,354,0 chrXI 77212 . A T 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.321;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.776;QD=24.35;ReadPosRankSum=1.672;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2858,306,0 chrXI 77517 . A C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0440;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.53;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4070,450,0 chrXI 78125 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.130;QD=23.80;ReadPosRankSum=1.657;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3308,360,0 chrXI 78341 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2982,309,0 chrXI 78422 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=4.720;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.199;QD=23.99;ReadPosRankSum=1.671;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4102,447,0 chrXI 78581 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3004,330,0 chrXI 78639 . A G 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8837;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.121;QD=19.24;ReadPosRankSum=2.944;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2438,267,0 chrXI 78708 . A T 1817 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.343;QD=20.42;ReadPosRankSum=1.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1850,195,0 chrXI 78797 . C T 269 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.81;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:33:302,33,0 chrXI 79142 . T G 2033 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2066,225,0 chrXI 79181 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1956,213,0 chrXI 79688 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.93;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2349,258,0 chrXI 79729 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.02;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3383,354,0 chrXI 79814 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2846,297,0 chrXI 79916 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0343;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.55;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2684,282,0 chrXI 80472 . G A 6691.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.7001;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.93;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:6691,685,0 chrXI 80724 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=24.32;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4305,451,0 chrXI 80750 . T G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.803;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.229;QD=22.24;ReadPosRankSum=1.656;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3058,330,0 chrXI 80751 . C A 3075 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=23.12;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3108,324,0 chrXI 80792 . A G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.329;QD=18.00;ReadPosRankSum=2.344;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2139,237,0 chrXI 80807 . T A 2129 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.35;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2162,231,0 chrXI 80882 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=15.7285;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.039;QD=17.84;ReadPosRankSum=1.699;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,104:109:99:2013,225,0 chrXI 81021 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.18;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3550,375,0 chrXI 81143 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.1258;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.08;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4316,454,0 chrXI 81244 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4445;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.79;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3784,417,0 chrXI 81400 . A C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.010;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.495;QD=20.19;ReadPosRankSum=1.710;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3163,345,0 chrXI 81406 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.92;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2942,327,0 chrXI 81454 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.570;QD=20.07;ReadPosRankSum=1.709;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3084,330,0 chrXI 81518 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=193;Dels=0.00;FS=6.180;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.159;QD=23.37;ReadPosRankSum=2.411;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4510,484,0 chrXI 81568 . G A 4782.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.5346;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.15;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4782,522,0 chrXI 81670 . T C 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=199;Dels=0.00;FS=2.874;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.081;QD=20.30;ReadPosRankSum=2.400;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4040,447,0 chrXI 81688 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.63;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4352,457,0 chrXI 81758 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=219;Dels=0.00;FS=6.367;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.290;QD=18.82;ReadPosRankSum=2.427;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:4121,471,0 chrXI 81766 . G T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.42;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4466,463,0 chrXI 81821 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.4151;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.94;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4583,498,0 chrXI 82123 . C T 6690.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.0431;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.98;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6690,688,0 chrXI 82441 . C T 5119.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=20.0916;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.42;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5119,547,0 chrXI 82621 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4793;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.66;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2471,264,0 chrXI 82791 . G C 1936 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.81;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1969,216,0 chrXI 83076 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=159;Dels=0.00;FS=2.960;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.884;QD=22.86;ReadPosRankSum=2.356;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3634,414,0 chrXI 83549 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.635;QD=23.72;ReadPosRankSum=2.414;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4909,531,0 chrXI 83733 . A G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=-0.899;QD=16.39;ReadPosRankSum=1.688;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1328,144,0 chrXI 83745 . T G 1327 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=16.80;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1360,147,0 chrXI 83746 . G A 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=17.48;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1414,147,0 chrXI 83753 . A G 1237 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=15.09;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1270,138,0 chrXI 83760 . A G 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=3.047;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=-1.470;QD=13.77;ReadPosRankSum=2.391;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1176,132,0 chrXI 83792 . C G 974 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=15.22;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1007,108,0 chrXI 83795 . C T 906 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=15.10;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:939,99,0 chrXI 83830 . T C 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=5.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=-1.682;QD=15.83;ReadPosRankSum=1.682;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1125,120,0 chrXI 83853 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=19.18;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1491,165,0 chrXI 83889 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=19.16;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1623,177,0 chrXI 83901 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=22.51;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1811,189,0 chrXI 84009 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=21.84;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1671,177,0 chrXI 84020 . T C 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;MQRankSum=0.472;QD=18.81;ReadPosRankSum=1.687;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1481,162,0 chrXI 84029 . C A 1351 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=15.89;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1384,159,0 chrXI 84057 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=14.50;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1338,153,0 chrXI 84078 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=14.23;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1228,141,0 chrXI 84086 . G T 1155 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=14.81;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1188,135,0 chrXI 84139 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=18.62;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1355,150,0 chrXI 84151 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=19.01;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1383,153,0 chrXI 84163 . C T 1399 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=18.17;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1432,156,0 chrXI 84166 . G T 1350 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=17.31;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1383,147,0 chrXI 84171 . C G 1413 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=17.66;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1446,159,0 chrXI 84180 . G C 1395 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=16.41;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1428,165,0 chrXI 84187 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.823;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;MQRankSum=-1.394;QD=17.54;ReadPosRankSum=1.648;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1471,159,0 chrXI 84308 . A T 713 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=11.88;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:87:746,87,0 chrXI 84319 . T C 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=-1.643;QD=14.32;ReadPosRankSum=2.718;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1007,114,0 chrXI 84335 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=14.79;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1246,129,0 chrXI 84350 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=15.63;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1346,141,0 chrXI 84421 . C T 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.799;QD=23.10;ReadPosRankSum=1.688;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1881,195,0 chrXI 84589 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.06;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2915,306,0 chrXI 84611 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.66;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3305,354,0 chrXI 84689 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.71;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3676,385,0 chrXI 85003 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.3455;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.83;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4388,474,0 chrXI 85027 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=2.903;HaplotypeScore=5.7464;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.941;QD=22.59;ReadPosRankSum=2.329;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4180,462,0 chrXI 85423 . T A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.34;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3306,351,0 chrXI 85435 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.39;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3235,339,0 chrXI 85468 . C G 2745 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.12;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2778,315,0 chrXI 85522 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2510,258,0 chrXI 85567 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.68;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3090,342,0 chrXI 85801 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.07;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2461,270,0 chrXI 85821 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.959;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.858;QD=19.19;ReadPosRankSum=1.538;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2086,222,0 chrXI 85837 . T G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.407;QD=16.69;ReadPosRankSum=0.015;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:1986,222,0 chrXI 85930 . A T 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.137;QD=21.07;ReadPosRankSum=2.927;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2056,225,0 chrXI 86206 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.80;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1813,189,0 chrXI 86234 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.82;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2192,231,0 chrXI 86327 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.802;QD=23.28;ReadPosRankSum=2.782;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2291,255,0 chrXI 86346 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.02;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2651,276,0 chrXI 87002 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.117;QD=22.91;ReadPosRankSum=1.673;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2736,294,0 chrXI 87119 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.9534;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.11;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2757,291,0 chrXI 87176 . T A 2385 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.61;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2418,264,0 chrXI 87410 . T A 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.126;QD=20.53;ReadPosRankSum=1.708;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2969,315,0 chrXI 87422 . T G 2593 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.93;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2626,291,0 chrXI 87764 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=3.604;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.925;QD=25.12;ReadPosRankSum=1.706;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3366,357,0 chrXI 88322 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.131;QD=23.77;ReadPosRankSum=1.684;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3423,375,0 chrXI 88476 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3264,363,0 chrXI 88585 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2378,252,0 chrXI 89063 . A T 2004 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.27;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2037,225,0 chrXI 89097 . T G 1783 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.46;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1816,195,0 chrXI 89124 . A G 1652 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.65;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1685,189,0 chrXI 89225 . T A 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.172;QD=23.45;ReadPosRankSum=1.697;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2355,249,0 chrXI 89262 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=15.70;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1462,150,0 chrXI 89273 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=76.7111;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=13.46;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1231,135,0 chrXI 89285 . T C 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=76.7265;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.699;QD=9.54;ReadPosRankSum=1.699;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1035,117,0 chrXI 89332 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=-0.940;QD=19.56;ReadPosRankSum=1.712;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3423,375,0 chrXI 89367 . T C 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.437;QD=21.97;ReadPosRankSum=1.680;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4351,489,0 chrXI 89374 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.11;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4221,477,0 chrXI 89534 . A T 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=228;Dels=0.00;FS=2.944;HaplotypeScore=16.4315;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.931;QD=21.76;ReadPosRankSum=2.428;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4962,514,0 chrXI 89545 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.18;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4638,484,0 chrXI 89554 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.88;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4315,480,0 chrXI 90349 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=3.827;HaplotypeScore=11.8697;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.214;QD=23.59;ReadPosRankSum=1.683;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4953,532,0 chrXI 90412 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.120;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.353;QD=18.95;ReadPosRankSum=1.715;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3827,411,0 chrXI 90418 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.86;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:3941,409,0 chrXI 90600 . G C 4723.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3436;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.49;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4723,531,0 chrXI 90681 . C T 5713.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.4119;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.32;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5713,630,0 chrXI 90832 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=3.554;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.562;QD=23.67;ReadPosRankSum=1.715;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4852,520,0 chrXI 91045 . C T 5389.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.30;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,207:213:99:5389,553,0 chrXI 91192 . G A 5093.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5093,561,0 chrXI 91339 . G A 6009.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.2719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6009,622,0 chrXI 91402 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.518;QD=22.85;ReadPosRankSum=1.699;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4798,522,0 chrXI 91504 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.43;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3310,351,0 chrXI 91565 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.35;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3554,372,0 chrXI 91796 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.48;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2236,246,0 chrXI 91825 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.42;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2300,255,0 chrXI 91835 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.844;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.385;QD=19.89;ReadPosRankSum=1.705;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2539,288,0 chrXI 92069 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=21.82;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3131,345,0 chrXI 92125 . T C 2358 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=19.65;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2391,267,0 chrXI 92145 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=18.82;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2197,249,0 chrXI 92154 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=4.988;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;MQRankSum=-1.141;QD=18.80;ReadPosRankSum=1.704;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2345,255,0 chrXI 92158 . C T 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;MQRankSum=0.859;QD=18.97;ReadPosRankSum=1.450;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2366,246,0 chrXI 92193 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=18.98;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2007,213,0 chrXI 92202 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;MQRankSum=-1.273;QD=18.52;ReadPosRankSum=1.697;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1848,204,0 chrXI 92251 . G T 1164 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=16.63;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1197,135,0 chrXI 92252 . T A 1222 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=17.71;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1255,135,0 chrXI 92259 . T A 1152 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=15.78;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1185,132,0 chrXI 92262 . C G 1069 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;QD=15.49;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1102,126,0 chrXI 92272 . C A 852 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=59.3215;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=12.35;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:885,99,0 chrXI 92313 . T C 1153 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=13.25;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1186,138,0 chrXI 92330 . G T 1812 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=16.04;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1845,198,0 chrXI 92358 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=6.204;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-1.217;QD=15.56;ReadPosRankSum=1.703;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1916,219,0 chrXI 92395 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.13;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1894,204,0 chrXI 92422 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=12.49;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1195,129,0 chrXI 92424 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=12.81;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1199,129,0 chrXI 92435 . C T 990 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=11.51;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1023,108,0 chrXI 92441 . G T 1001 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=11.92;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1034,111,0 chrXI 92500 . T G 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.225;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=-1.225;QD=18.11;ReadPosRankSum=1.690;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1554,174,0 chrXI 92507 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=19.67;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1764,183,0 chrXI 92589 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=17.70;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2051,219,0 chrXI 92653 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=37.1124;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=14.98;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:797,87,0 chrXI 92679 . T G 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=53;Dels=0.00;FS=9.063;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-1.377;QD=16.49;ReadPosRankSum=2.264;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:907,99,0 chrXI 92948 . A T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.85;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3976,426,0 chrXI 93041 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.1186;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.62;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4735,493,0 chrXI 93302 . T G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5620;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.411;QD=22.88;ReadPosRankSum=1.689;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3684,402,0 chrXI 93349 . G T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.31;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4346,460,0 chrXI 93352 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.00;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4139,444,0 chrXI 93391 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.85;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4449,466,0 chrXI 93445 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.0845;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.51;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4513,486,0 chrXI 93529 . C G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.60;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4366,483,0 chrXI 93562 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.65;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3926,432,0 chrXI 93696 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=156;Dels=0.00;FS=2.713;HaplotypeScore=18.6548;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.704;QD=20.69;ReadPosRankSum=2.323;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3262,354,0 chrXI 93806 . C G 2411 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,108:113:99:2444,267,0 chrXI 93852 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2806,321,0 chrXI 93937 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3018,312,0 chrXI 94000 . A C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=2.986;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.115;QD=22.61;ReadPosRankSum=2.408;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2724,306,0 chrXI 94374 . C G 1637 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.06;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1670,186,0 chrXI 94473 . T C 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DP=82;Dels=0.00;FS=2.574;HaplotypeScore=7.1318;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.075;QD=21.57;ReadPosRankSum=2.179;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1802,192,0 chrXI 94945 . C A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.96;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4672,493,0 chrXI 94985 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3774,396,0 chrXI 95277 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=6.849;HaplotypeScore=8.0635;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.422;QD=23.02;ReadPosRankSum=2.204;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3683,399,0 chrXI 95374 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.99;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4606,487,0 chrXI 95430 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2696;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.04;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3514,369,0 chrXI 95443 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.48;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3372,351,0 chrXI 96344 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.86;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2825,294,0 chrXI 96552 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=23.55;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2600,279,0 chrXI 97113 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.00;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3312,369,0 chrXI 97143 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.96;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2857,297,0 chrXI 97362 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.21;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3704,396,0 chrXI 97380 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.03;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3605,376,0 chrXI 97410 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.75;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3372,351,0 chrXI 97680 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=3.219;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.872;QD=22.51;ReadPosRankSum=1.662;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3376,375,0 chrXI 97716 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5382;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.53;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3186,345,0 chrXI 97758 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3419,372,0 chrXI 97897 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.46;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3012,324,0 chrXI 97953 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.46;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3566,370,0 chrXI 98046 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.191;DP=166;Dels=0.00;FS=5.264;HaplotypeScore=13.8464;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.349;QD=21.43;ReadPosRankSum=3.395;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:4,160:166:99:3557,402,0 chrXI 98085 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.918;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-0.723;QD=20.85;ReadPosRankSum=1.692;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3649,411,0 chrXI 98088 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=4.018;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.261;QD=22.50;ReadPosRankSum=-0.174;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3803,380,0 chrXI 98124 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.33;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3391,357,0 chrXI 98175 . G C 2295 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.68;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2328,261,0 chrXI 98324 . A G 1257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-0.420;QD=19.05;ReadPosRankSum=1.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1290,144,0 chrXI 98325 . C T 1337 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=20.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1370,144,0 chrXI 98422 . A G 1403 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1436,150,0 chrXI 98452 . C T 2193 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2226,231,0 chrXI 98707 . A C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4768;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.88;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3567,396,0 chrXI 98981 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.40;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4815,519,0 chrXI 99008 . T C 5368.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.73;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5368,609,0 chrXI 99100 . A G 5586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=3.459;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.031;QD=24.61;ReadPosRankSum=1.717;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5586,598,0 chrXI 99164 . G A 7168.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=25.9829;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.97;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7168,751,0 chrXI 99224 . T C 6701.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=16.0202;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.55;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:6701,732,0 chrXI 99633 . A G 4858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=224;Dels=0.00;FS=5.225;HaplotypeScore=23.4079;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.532;QD=21.69;ReadPosRankSum=2.968;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,218:224:99:4858,540,0 chrXI 100445 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.58;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:84:778,84,0 chrXI 100670 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=23.72;ReadPosRankSum=1.696;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2286,246,0 chrXI 101564 . A G 5328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=242;Dels=0.00;FS=3.012;HaplotypeScore=20.6288;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.543;QD=22.02;ReadPosRankSum=2.429;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5328,571,0 chrXI 102908 . C T 5492.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.85;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5492,568,0 chrXI 103037 . C T 5157.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.6383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5157,550,0 chrXI 103490 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=221;Dels=0.00;FS=7.189;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.095;QD=19.76;ReadPosRankSum=2.405;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:4366,492,0 chrXI 103493 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.03;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4366,477,0 chrXI 103508 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=215;Dels=0.00;FS=3.830;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.943;QD=20.07;ReadPosRankSum=1.716;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4314,471,0 chrXI 103649 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.08;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3815,397,0 chrXI 103811 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.70;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4654,496,0 chrXI 103928 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.789;QD=23.71;ReadPosRankSum=1.700;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:5051,555,0 chrXI 104318 . G T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4067,432,0 chrXI 105107 . C A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3820,411,0 chrXI 105188 . C T 5332.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5332,559,0 chrXI 105974 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=153;Dels=0.00;FS=4.184;HaplotypeScore=18.7535;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.709;QD=24.61;ReadPosRankSum=1.481;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3766,402,0 chrXI 106209 . T C 5479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.632;DP=228;Dels=0.00;FS=12.215;HaplotypeScore=16.8037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.065;QD=24.03;ReadPosRankSum=3.798;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:5,222:228:99:5479,591,0 chrXI 107231 . C A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.11;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3390,349,0 chrXI 107762 . T A 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=208;Dels=0.00;FS=12.387;HaplotypeScore=18.5859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.952;QD=22.91;ReadPosRankSum=2.947;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4766,505,0 chrXI 108780 . T G 2136 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.15;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2169,246,0 chrXI 108782 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.621;QD=20.07;ReadPosRankSum=1.667;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2180,246,0 chrXI 108816 . T C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=95;Dels=0.00;FS=3.033;HaplotypeScore=3.9713;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-2.113;QD=17.60;ReadPosRankSum=1.802;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1705,186,0 chrXI 108841 . T G 1657 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.41;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1690,183,0 chrXI 109080 . G C 2883 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.59;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2916,318,0 chrXI 109538 . C T 4359.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4359,457,0 chrXI 109648 . A T 2517 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2774;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=23.52;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2550,273,0 chrXI 109778 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.56;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2176,225,0 chrXI 109838 . C G 1576 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=21.30;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1609,177,0 chrXI 110429 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=10.117;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=1.579;QD=23.40;ReadPosRankSum=1.701;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2747,318,0 chrXI 110470 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3935;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=24.62;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:3037,324,0 chrXI 110746 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.05;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3657,384,0 chrXI 110832 . G C 2258 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.16;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2291,243,0 chrXI 110834 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.129;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.576;QD=20.42;ReadPosRankSum=1.701;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2340,252,0 chrXI 111034 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=0.075;QD=24.12;ReadPosRankSum=1.707;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3377,369,0 chrXI 111039 . T G 3197 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=23.17;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3230,345,0 chrXI 111187 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.58;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3691,390,0 chrXI 111232 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=17.87;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2535,279,0 chrXI 111236 . G A 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.189;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;MQRankSum=-1.318;QD=17.40;ReadPosRankSum=0.543;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2364,232,0 chrXI 111256 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=16.59;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2273,252,0 chrXI 111265 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=16.04;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2214,249,0 chrXI 111552 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.4430;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.72;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3246,336,0 chrXI 111586 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7372;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.01;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3406,366,0 chrXI 111679 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.28;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3376,346,0 chrXI 111787 . T G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=148;Dels=0.00;FS=9.021;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.295;QD=19.99;ReadPosRankSum=2.197;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:2992,321,0 chrXI 112039 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.05;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2984,333,0 chrXI 112062 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.55;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3053,315,0 chrXI 112144 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2471,258,0 chrXI 112607 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.710;QD=22.57;ReadPosRankSum=1.657;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3170,336,0 chrXI 112742 . G C 2150 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.91;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2183,249,0 chrXI 112744 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.52;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2465,255,0 chrXI 112929 . A T 1251 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.55;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1284,135,0 chrXI 113078 . C A 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.187;QD=26.43;ReadPosRankSum=1.693;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2385,246,0 chrXI 113106 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.73;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1829,192,0 chrXI 113110 . C A 1598 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.73;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1631,183,0 chrXI 113142 . A T 1309 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.83;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1342,141,0 chrXI 113884 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2720,291,0 chrXI 113998 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7174;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.62;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3964,429,0 chrXI 114199 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=195;Dels=0.00;FS=7.944;HaplotypeScore=20.0337;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.288;QD=21.83;ReadPosRankSum=3.776;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:5,187:195:99:4256,462,0 chrXI 114400 . C T 5673.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.14;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5673,589,0 chrXI 114933 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=26.82;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1776,192,0 chrXI 115293 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1577,168,0 chrXI 115499 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.33;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1462,171,0 chrXI 115557 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.91;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1298,138,0 chrXI 115612 . C G 2196 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.95;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2229,234,0 chrXI 115636 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.85;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2569,282,0 chrXI 115680 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.75;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3264,345,0 chrXI 115797 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.34;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3254,369,0 chrXI 115863 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.632;QD=20.83;ReadPosRankSum=1.709;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3137,351,0 chrXI 115888 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.87;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2986,321,0 chrXI 115962 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.93;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2808,306,0 chrXI 115995 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.08;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2875,300,0 chrXI 116904 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5328;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.10;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4342,468,0 chrXI 117198 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=148;Dels=0.00;FS=3.424;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.012;QD=21.46;ReadPosRankSum=1.659;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:3209,360,0 chrXI 117695 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.13;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4302,462,0 chrXI 118015 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=4.326;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.098;QD=22.46;ReadPosRankSum=1.693;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3998,459,0 chrXI 118487 . C A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.18;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4029,415,0 chrXI 118549 . C A 3185 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.68;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3218,348,0 chrXI 118559 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=6.985;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.582;QD=19.66;ReadPosRankSum=2.391;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3284,372,0 chrXI 119177 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1380;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.15;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4104,444,0 chrXI 119221 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=238;Dels=0.00;FS=7.274;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.611;QD=19.44;ReadPosRankSum=2.397;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:2,233:238:99:4626,522,0 chrXI 119238 . G A 5180.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.40;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5180,532,0 chrXI 119302 . A G 5653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=254;Dels=0.00;FS=3.027;HaplotypeScore=16.2080;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.228;QD=22.26;ReadPosRankSum=2.420;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:5653,618,0 chrXI 119339 . T C 5514.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.71;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5514,600,0 chrXI 119350 . G T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.0262;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.69;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,251:256:99:5297,576,0 chrXI 119431 . C T 5704.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6259;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.80;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5704,601,0 chrXI 120088 . A G 5761.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.83;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5761,616,0 chrXI 120175 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.5277;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.02;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4554,484,0 chrXI 120563 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.035;QD=24.22;ReadPosRankSum=1.689;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3875,417,0 chrXI 120740 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=4.044;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.340;QD=23.19;ReadPosRankSum=1.698;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4753,543,0 chrXI 120989 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.841;QD=19.09;ReadPosRankSum=1.707;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2706,294,0 chrXI 120995 . A T 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.368;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.037;QD=20.31;ReadPosRankSum=1.682;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2856,297,0 chrXI 121247 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=148;Dels=0.00;FS=6.049;HaplotypeScore=7.1553;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.306;QD=22.82;ReadPosRankSum=2.898;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3377,375,0 chrXI 121508 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=123;Dels=0.00;FS=11.935;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.779;QD=21.76;ReadPosRankSum=2.389;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2709,300,0 chrXI 122192 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.46;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3081,327,0 chrXI 122784 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.67;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4465,466,0 chrXI 122858 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.09;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3865,406,0 chrXI 122945 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.37;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3509,364,0 chrXI 123123 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.590;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.722;QD=23.49;ReadPosRankSum=1.708;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3383,363,0 chrXI 123302 . A C 3148 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.85;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3181,345,0 chrXI 123413 . G C 3117 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.61;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3150,342,0 chrXI 123463 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.62;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3521,372,0 chrXI 123578 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.85;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3280,334,0 chrXI 123611 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.29;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2630,282,0 chrXI 123617 . A G 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=2.640;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.251;QD=21.42;ReadPosRankSum=2.408;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2582,285,0 chrXI 123848 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=5.219;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=0.545;QD=21.43;ReadPosRankSum=1.659;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3097,339,0 chrXI 123855 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=19.95;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3106,345,0 chrXI 123867 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=17.21;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2924,333,0 chrXI 123889 . T G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=192;Dels=0.00;FS=2.607;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.456;QD=18.02;ReadPosRankSum=2.398;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3459,375,0 chrXI 123941 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.5196;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.429;QD=20.81;ReadPosRankSum=1.717;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:4891,540,0 chrXI 124007 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=221;Dels=0.00;FS=3.007;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.343;QD=21.63;ReadPosRankSum=2.404;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:2,216:221:99:4780,537,0 chrXI 124022 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.44;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4191,474,0 chrXI 124031 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.272;QD=19.88;ReadPosRankSum=1.681;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4056,459,0 chrXI 124073 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.551;QD=19.85;ReadPosRankSum=1.700;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:4347,495,0 chrXI 124109 . T C 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=9.710;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.175;QD=21.08;ReadPosRankSum=2.368;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,208:213:99:4489,513,0 chrXI 124463 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.42;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2913,306,0 chrXI 124690 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.93;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3316,345,0 chrXI 124741 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=2.652;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.515;QD=22.83;ReadPosRankSum=2.402;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3585,381,0 chrXI 124920 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.72;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3550,370,0 chrXI 125057 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.0877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.75;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4351,457,0 chrXI 125147 . G A 4594.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4594,478,0 chrXI 125207 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=170;Dels=0.00;FS=5.933;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.006;QD=21.42;ReadPosRankSum=2.923;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3641,417,0 chrXI 125303 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.38;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4513,466,0 chrXI 125453 . T A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.57;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3693,376,0 chrXI 125483 . T A 2856 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.6618;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.05;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2889,312,0 chrXI 125562 . A G 3071 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3104,336,0 chrXI 125651 . T A 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=107;Dels=0.00;FS=6.142;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.610;QD=21.59;ReadPosRankSum=2.877;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2343,246,0 chrXI 125700 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.64;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2421,249,0 chrXI 125800 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.57;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2897,309,0 chrXI 125830 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.469;QD=24.23;ReadPosRankSum=1.667;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2650,282,0 chrXI 126084 . A T 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=5.124;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=1.696;QD=25.15;ReadPosRankSum=1.642;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4828,516,0 chrXI 126208 . T C 5741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=254;Dels=0.00;FS=8.797;HaplotypeScore=18.4533;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.195;QD=22.60;ReadPosRankSum=3.378;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:4,249:254:99:5741,633,0 chrXI 126450 . A C 7558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=15.7974;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.425;QD=23.55;ReadPosRankSum=1.710;SB=-3.665e+03 GT:AD:DP:GQ:PL 1/1:1,317:321:99:7558,829,0 chrXI 126748 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.8719;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.740;QD=23.39;ReadPosRankSum=1.716;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:5215,559,0 chrXI 127159 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.80;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2860,300,0 chrXI 127196 . G A 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=112;Dels=0.00;FS=5.804;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=1.676;QD=16.02;ReadPosRankSum=2.847;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:1827,195,0 chrXI 127198 . A T 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.587;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=0.818;QD=14.36;ReadPosRankSum=3.530;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:5,105:110:99:1613,180,0 chrXI 127208 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7774;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=16.36;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1767,192,0 chrXI 127867 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.35;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4918,520,0 chrXI 128164 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.415;QD=22.49;ReadPosRankSum=1.708;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3226,357,0 chrXI 128185 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.42;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3262,348,0 chrXI 128195 . A C 2670 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.63;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2703,306,0 chrXI 128646 . C T 6137.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.05;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6137,634,0 chrXI 129198 . C G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3670,390,0 chrXI 129511 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.778;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.539;QD=23.36;ReadPosRankSum=1.693;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4228,480,0 chrXI 129623 . C A 2589 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.10;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2622,285,0 chrXI 129844 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7511;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.71;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3397,375,0 chrXI 129862 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.54;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3598,381,0 chrXI 130226 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.60;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3456,361,0 chrXI 130422 . G T 3028 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.88;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3061,318,0 chrXI 130584 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.45;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3301,357,0 chrXI 130801 . G A 4810.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6471;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.14;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4810,496,0 chrXI 131399 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2789,318,0 chrXI 131862 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.60;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3493,372,0 chrXI 132074 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.102;QD=22.98;ReadPosRankSum=1.710;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3539,402,0 chrXI 132152 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.44;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2527,267,0 chrXI 132155 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.47;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2551,267,0 chrXI 132251 . T A 2679 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=20.61;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2712,282,0 chrXI 132257 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=19.78;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2565,267,0 chrXI 132287 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=7.245;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.088;QD=16.44;ReadPosRankSum=2.411;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2121,228,0 chrXI 132298 . A G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.035;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-1.239;QD=17.62;ReadPosRankSum=2.411;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2288,243,0 chrXI 132383 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.54;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3098,336,0 chrXI 132408 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.58;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2749,288,0 chrXI 132423 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.64;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2494,267,0 chrXI 132442 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.76;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2162,228,0 chrXI 132521 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.647;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.386;QD=22.68;ReadPosRankSum=-1.178;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3424,363,0 chrXI 132731 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.343;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.756;QD=22.95;ReadPosRankSum=1.662;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3443,369,0 chrXI 133227 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=7.611;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.410;QD=21.51;ReadPosRankSum=2.397;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3088,345,0 chrXI 133251 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.720;DP=153;Dels=0.00;FS=17.327;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.103;QD=22.31;ReadPosRankSum=3.792;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:5,148:153:99:3414,369,0 chrXI 133472 . C A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.20;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3330,363,0 chrXI 133596 . C G 2338 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.65;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2371,255,0 chrXI 133597 . A T 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=106;Dels=0.00;FS=5.880;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-1.394;QD=21.37;ReadPosRankSum=2.933;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2298,252,0 chrXI 133744 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.78;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2957,318,0 chrXI 133991 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2831,306,0 chrXI 134323 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.73;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1947,219,0 chrXI 134344 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.15;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2424,255,0 chrXI 135083 . A G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.945;QD=23.25;ReadPosRankSum=1.710;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3580,390,0 chrXI 135341 . T C 2706 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.50;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2739,312,0 chrXI 135691 . C G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3743,399,0 chrXI 135796 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.27;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2430,252,0 chrXI 136140 . T A 569 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=21.07;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:66:602,66,0 chrXI 136268 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.27;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1632,168,0 chrXI 136273 . T A 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.421;QD=16.97;ReadPosRankSum=2.876;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1543,162,0 chrXI 136395 . C G 3065 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.87;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3098,336,0 chrXI 136401 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.67;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2807,309,0 chrXI 136421 . A C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5204;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.535;QD=20.76;ReadPosRankSum=1.707;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2877,318,0 chrXI 136588 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=2.994;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.475;QD=22.27;ReadPosRankSum=2.412;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2972,324,0 chrXI 136692 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.66;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2470,258,0 chrXI 136700 . A C 2237 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.72;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2270,255,0 chrXI 136782 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.32;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2948,318,0 chrXI 136836 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.72;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3301,354,0 chrXI 136860 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.287;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.502;QD=21.79;ReadPosRankSum=2.388;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3486,372,0 chrXI 136898 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=148;Dels=0.00;FS=5.592;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.279;QD=20.76;ReadPosRankSum=2.953;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3105,339,0 chrXI 136931 . A C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.531;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.564;QD=24.67;ReadPosRankSum=1.676;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3117,339,0 chrXI 137272 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.25;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2186,228,0 chrXI 137449 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.51;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,78:80:99:2154,225,0 chrXI 137613 . T G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=89;Dels=0.00;FS=3.854;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.306;QD=22.40;ReadPosRankSum=1.691;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,84:89:99:2027,225,0 chrXI 137708 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.38;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2910,318,0 chrXI 137740 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.40;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2831,303,0 chrXI 138163 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.45;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3036,330,0 chrXI 138169 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.270;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.301;QD=21.33;ReadPosRankSum=1.707;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2976,324,0 chrXI 138829 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.262;QD=23.36;ReadPosRankSum=1.648;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3877,432,0 chrXI 138955 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.53;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2574,270,0 chrXI 139006 . T A 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.102;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.866;QD=19.87;ReadPosRankSum=1.700;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2179,228,0 chrXI 139012 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.71;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2035,222,0 chrXI 139532 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=147;Dels=0.00;FS=6.294;HaplotypeScore=10.9476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.810;QD=22.88;ReadPosRankSum=2.399;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3363,369,0 chrXI 140593 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3240,342,0 chrXI 140644 . A G 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.338;QD=24.01;ReadPosRankSum=2.319;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2746,291,0 chrXI 140833 . T G 2886 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.37;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2919,315,0 chrXI 141102 . G T 2625 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.83;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2658,282,0 chrXI 141104 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=-1.206;QD=20.83;ReadPosRankSum=1.704;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2637,279,0 chrXI 141113 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=20.09;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2584,276,0 chrXI 141122 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=18.75;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2471,267,0 chrXI 141163 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.23;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2622,270,0 chrXI 141217 . A C 2696 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.40;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2729,297,0 chrXI 141227 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.5294;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.45;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2839,312,0 chrXI 141291 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.79;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3214,363,0 chrXI 141507 . A T 981 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.368;QD=17.21;ReadPosRankSum=1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1014,120,0 chrXI 141805 . G C 4945.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.89;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4945,531,0 chrXI 141809 . A G 5091.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.53;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5091,544,0 chrXI 141842 . A G 5286.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.0550;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.12;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5286,565,0 chrXI 142310 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=185;Dels=0.00;FS=2.807;HaplotypeScore=18.6114;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.088;QD=19.28;ReadPosRankSum=0.560;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:3567,402,0 chrXI 142523 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;DP=210;Dels=0.00;FS=6.602;HaplotypeScore=22.3413;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.817;QD=17.00;ReadPosRankSum=1.604;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:3569,380,0 chrXI 142535 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=194;Dels=0.00;FS=10.018;HaplotypeScore=15.2916;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.224;QD=16.67;ReadPosRankSum=0.787;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:3268,337,0 chrXI 142780 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1949;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=1;MQRankSum=1.708;QD=22.45;ReadPosRankSum=1.541;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3278,357,0 chrXI 142986 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.50;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2289,255,0 chrXI 143177 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.51;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2549,270,0 chrXI 143668 . C T 4330.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.3069;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.24;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4330,457,0 chrXI 143713 . C T 4505.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8563;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.35;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4505,469,0 chrXI 143731 . A T 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.111;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.418;QD=22.30;ReadPosRankSum=1.712;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3903,417,0 chrXI 143785 . A T 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=162;Dels=0.00;FS=9.130;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.372;QD=22.25;ReadPosRankSum=3.319;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3604,381,0 chrXI 143865 . T C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=196;Dels=0.00;FS=3.193;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.018;QD=23.57;ReadPosRankSum=1.679;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4619,507,0 chrXI 144069 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=2.868;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.653;QD=21.44;ReadPosRankSum=2.382;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3142,351,0 chrXI 144520 . A T 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.949;HaplotypeScore=7.1031;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;MQRankSum=-1.339;QD=24.15;ReadPosRankSum=1.686;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3622,378,0 chrXI 144571 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=0.831;QD=19.01;ReadPosRankSum=1.692;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3289,357,0 chrXI 144577 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=18.24;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3261,345,0 chrXI 144619 . T A 3166 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=15.29;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3199,331,0 chrXI 144646 . T C 2853 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=14.63;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:2886,315,0 chrXI 144700 . C T 1498.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.742;DP=245;Dels=0.00;FS=9.816;HaplotypeScore=132.3816;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=1;MQRankSum=0.543;QD=6.11;ReadPosRankSum=2.865;SB=-1.164e+03 GT:AD:DP:GQ:PL 0/1:64,181:245:99:1528,0,598 chrXI 144718 . T C 483.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;DP=246;Dels=0.00;FS=9.878;HaplotypeScore=78.1198;MLEAC=1;MLEAF=0.500;MQ=38.73;MQ0=1;MQRankSum=-2.653;QD=1.96;ReadPosRankSum=-4.418;SB=-5.310e+02 GT:AD:DP:GQ:PL 0/1:159,87:246:99:513,0,1879 chrXI 144760 . A G 3418.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.791;DP=341;Dels=0.00;FS=53.417;HaplotypeScore=51.2710;MLEAC=1;MLEAF=0.500;MQ=38.41;MQ0=4;MQRankSum=1.487;QD=10.02;ReadPosRankSum=6.782;SB=-2.235e+03 GT:AD:DP:GQ:PL 0/1:105,234:341:99:3418,0,186 chrXI 144799 . A G 276.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.506;DP=356;Dels=0.00;FS=15.367;HaplotypeScore=93.2792;MLEAC=1;MLEAF=0.500;MQ=35.02;MQ0=5;MQRankSum=-2.476;QD=0.78;ReadPosRankSum=3.355;SB=-8.560e+02 GT:AD:DP:GQ:PL 0/1:244,111:356:99:306,0,3348 chrXI 144802 . A T 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.224;DP=351;Dels=0.00;FS=15.455;HaplotypeScore=97.4379;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=5;MQRankSum=-1.664;QD=0.98;ReadPosRankSum=4.243;SB=-8.640e+02 GT:AD:DP:GQ:PL 0/1:239,112:351:99:374,0,2977 chrXI 144803 . A T 346.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;DP=351;Dels=0.00;FS=14.191;HaplotypeScore=98.3501;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=5;MQRankSum=-1.876;QD=0.99;ReadPosRankSum=4.278;SB=-8.660e+02 GT:AD:DP:GQ:PL 0/1:237,113:351:99:376,0,3144 chrXI 144814 . A G 499.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.830;DP=340;Dels=0.00;FS=78.095;HaplotypeScore=103.9370;MLEAC=1;MLEAF=0.500;MQ=35.24;MQ0=5;MQRankSum=-1.587;QD=1.47;ReadPosRankSum=-2.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:251,88:340:99:529,0,2681 chrXI 144826 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;DP=357;Dels=0.00;FS=16.423;HaplotypeScore=64.1003;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=2;MQRankSum=-0.110;QD=0.13;ReadPosRankSum=-1.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:315,40:357:76:76,0,3073 chrXI 144844 . C T 586.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=143.3307;MLEAC=1;MLEAF=0.500;MQ=35.52;MQ0=0;MQRankSum=-4.064;QD=1.71;ReadPosRankSum=-3.234;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:286,57:343:99:616,0,2231 chrXI 144850 . T C 1101.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.863;DP=346;Dels=0.00;FS=15.396;HaplotypeScore=162.9136;MLEAC=1;MLEAF=0.500;MQ=35.11;MQ0=0;MQRankSum=-4.437;QD=3.18;ReadPosRankSum=-4.757;SB=-1.184e+03 GT:AD:DP:GQ:PL 0/1:144,201:346:99:1131,0,1623 chrXI 144862 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.386;DP=323;Dels=0.00;FS=3.665;HaplotypeScore=21.0111;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=0.789;QD=8.63;ReadPosRankSum=2.819;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:32,291:323:99:2822,111,0 chrXI 144880 . C T 1358.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DP=334;Dels=0.00;FS=9.546;HaplotypeScore=54.1681;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=0;MQRankSum=-3.938;QD=4.07;ReadPosRankSum=-2.552;SB=-2.100e+03 GT:AD:DP:GQ:PL 0/1:100,234:334:99:1388,0,1080 chrXI 144883 . G A 1361.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.717;DP=343;Dels=0.00;FS=1.372;HaplotypeScore=53.3794;MLEAC=1;MLEAF=0.500;MQ=37.93;MQ0=0;MQRankSum=-2.505;QD=3.97;ReadPosRankSum=0.937;SB=-2.007e+03 GT:AD:DP:GQ:PL 0/1:121,222:343:99:1391,0,1170 chrXI 144889 . T C 3580.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;DP=346;Dels=0.03;FS=2.787;HaplotypeScore=52.8897;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;MQRankSum=-0.092;QD=10.35;ReadPosRankSum=2.413;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:2,333:335:99:3580,378,0 chrXI 144916 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.012;DP=339;Dels=0.00;FS=38.006;HaplotypeScore=53.8850;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=2.095;QD=12.83;ReadPosRankSum=2.845;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:16,323:339:99:4348,426,0 chrXI 145495 . T C 2061 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.93;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2094,222,0 chrXI 145622 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=14.56;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:41:66:630,66,0 chrXI 145747 . C T 454 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.92;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:487,51,0 chrXI 145779 . T C 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-1.300;QD=15.76;ReadPosRankSum=2.365;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:3,56:59:99:963,102,0 chrXI 145797 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=15.52;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1135,120,0 chrXI 145814 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=15.22;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1220,132,0 chrXI 145832 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=15.94;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1420,150,0 chrXI 145859 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.18;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1356,141,0 chrXI 145993 . G C 4926.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.03;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,199:205:99:4926,540,0 chrXI 146213 . A G 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=220;Dels=0.00;FS=2.660;HaplotypeScore=15.9289;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.398;QD=22.53;ReadPosRankSum=2.382;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:4957,534,0 chrXI 146436 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=174;Dels=0.01;FS=2.804;HaplotypeScore=17.7081;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=0.121;QD=23.28;ReadPosRankSum=2.421;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4051,453,0 chrXI 146489 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=25.53;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4596,475,0 chrXI 146583 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=2.586;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;MQRankSum=-1.956;QD=20.07;ReadPosRankSum=2.948;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2763,297,0 chrXI 146593 . A G 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;MQRankSum=-1.622;QD=18.25;ReadPosRankSum=1.705;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2333,255,0 chrXI 146595 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=18.10;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2295,246,0 chrXI 146606 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=15.75;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2065,243,0 chrXI 146631 . A C 1870 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=15.45;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1903,204,0 chrXI 146650 . A T 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=-0.244;QD=16.87;ReadPosRankSum=1.705;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2193,225,0 chrXI 146689 . A T 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=7.5222;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=1.673;QD=22.93;ReadPosRankSum=1.703;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2807,294,0 chrXI 146743 . A T 2904 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=23.80;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2937,309,0 chrXI 146875 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;MQRankSum=-1.604;QD=19.07;ReadPosRankSum=2.373;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2493,270,0 chrXI 146915 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=123.8098;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=15.69;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2340,261,0 chrXI 147072 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=161;Dels=0.01;FS=7.890;HaplotypeScore=13.2528;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.117;QD=21.53;ReadPosRankSum=2.325;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3467,369,0 chrXI 147232 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.69;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2994,324,0 chrXI 147261 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2750;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.62;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2868,300,0 chrXI 147343 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.00;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2717,294,0 chrXI 147354 . G T 2617 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.45;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2650,285,0 chrXI 147360 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.99;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2694,282,0 chrXI 147421 . G C 2068 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.08;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2101,222,0 chrXI 147443 . A T 2198 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2827;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.66;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2231,234,0 chrXI 147476 . G C 2336 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.25;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2369,261,0 chrXI 147617 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=26.01;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3050,318,0 chrXI 147885 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=160;Dels=0.00;FS=7.566;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.321;QD=22.14;ReadPosRankSum=2.403;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3543,387,0 chrXI 147892 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=23.56;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3605,378,0 chrXI 147911 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.50;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3160,339,0 chrXI 147977 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.700;HaplotypeScore=11.1154;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.182;QD=22.17;ReadPosRankSum=1.708;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3204,363,0 chrXI 148038 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.36;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3195,351,0 chrXI 148063 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7771;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.30;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3475,361,0 chrXI 148157 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.63;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2996,324,0 chrXI 148221 . G T 2849 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.55;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2882,303,0 chrXI 148284 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=113;Dels=0.00;FS=11.058;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.296;QD=21.83;ReadPosRankSum=2.406;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2500,267,0 chrXI 148560 . G T 2550 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.3088;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.97;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2583,273,0 chrXI 148617 . T A 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=108;Dels=0.00;FS=10.720;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.804;QD=23.19;ReadPosRankSum=2.916;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2538,261,0 chrXI 148629 . G T 2568 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.14;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2601,273,0 chrXI 148757 . A T 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.474;QD=25.26;ReadPosRankSum=1.658;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2407,255,0 chrXI 148801 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.582;DP=108;Dels=0.00;FS=12.318;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.360;QD=22.55;ReadPosRankSum=3.714;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:5,103:108:99:2468,279,0 chrXI 148894 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=3.013;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.422;QD=22.50;ReadPosRankSum=2.404;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2508,273,0 chrXI 148938 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=23.52;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2197,237,0 chrXI 148984 . G T 2167 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.30;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2200,234,0 chrXI 149114 . T G 1963 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=21.11;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1996,216,0 chrXI 149118 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=19.71;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1886,207,0 chrXI 149131 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=18.90;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1791,195,0 chrXI 149142 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=-0.678;QD=19.05;ReadPosRankSum=1.657;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1786,195,0 chrXI 149176 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.252;QD=19.00;ReadPosRankSum=1.665;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1990,216,0 chrXI 149301 . T C 3108 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.19;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3141,336,0 chrXI 149328 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.61;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3063,315,0 chrXI 149344 . A G 2797 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.42;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2830,324,0 chrXI 149388 . A C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.594;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.317;QD=21.86;ReadPosRankSum=1.711;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3672,405,0 chrXI 149548 . A G 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DP=175;Dels=0.00;FS=3.061;HaplotypeScore=7.8726;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.498;QD=22.77;ReadPosRankSum=1.274;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3984,425,0 chrXI 149765 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7626;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3348,351,0 chrXI 149835 . G T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.69;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4419,457,0 chrXI 150554 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1400;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.04;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2915,309,0 chrXI 150866 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.24;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3708,388,0 chrXI 150910 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.39;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3314,348,0 chrXI 151229 . G T 2149 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.28;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2182,225,0 chrXI 151420 . A T 3009 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=24.27;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3042,327,0 chrXI 151866 . G T 2918 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2951,309,0 chrXI 152116 . T A 3118 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.93;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3151,327,0 chrXI 152140 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.827;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.569;QD=23.09;ReadPosRankSum=-1.262;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3268,348,0 chrXI 152290 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=24.01;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4226,436,0 chrXI 152294 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=176;Dels=0.00;FS=3.035;HaplotypeScore=5.4687;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.495;QD=21.10;ReadPosRankSum=2.380;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3714,393,0 chrXI 152402 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.87;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3819,420,0 chrXI 152485 . A C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=189;Dels=0.00;FS=3.300;HaplotypeScore=10.1276;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.913;QD=23.10;ReadPosRankSum=1.658;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4366,474,0 chrXI 152571 . T G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.802;QD=26.29;ReadPosRankSum=1.686;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3943,420,0 chrXI 152614 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.16;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3521,393,0 chrXI 152632 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.38;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3788,391,0 chrXI 152688 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.941;QD=21.01;ReadPosRankSum=1.604;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3404,360,0 chrXI 152690 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.08;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3374,354,0 chrXI 153052 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4470;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.89;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1716,177,0 chrXI 153463 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=26.40;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3986,415,0 chrXI 153726 . C A 2407 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2440,258,0 chrXI 154732 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4167,456,0 chrXI 155453 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2267,240,0 chrXI 158549 . T G 2890 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.12;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2923,330,0 chrXI 159676 . A T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4382,463,0 chrXI 163888 . G T 5854.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5854,639,0 chrXI 164020 . G T 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=221;Dels=0.00;FS=3.871;HaplotypeScore=16.2055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.349;QD=21.29;ReadPosRankSum=1.493;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4706,502,0 chrXI 166502 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2108;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.19;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3618,376,0 chrXI 167261 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=160;Dels=0.00;FS=2.583;HaplotypeScore=14.9055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.138;QD=21.79;ReadPosRankSum=2.881;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3486,384,0 chrXI 169186 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2592,285,0 chrXI 171212 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.37;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3382,372,0 chrXI 171261 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.69;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3731,382,0 chrXI 171276 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=184;Dels=0.00;FS=2.575;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.247;QD=19.20;ReadPosRankSum=2.940;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3532,387,0 chrXI 171454 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.92;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4664,484,0 chrXI 171646 . T A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.22;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3523,393,0 chrXI 171647 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.96;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3624,384,0 chrXI 171772 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.04;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3756,405,0 chrXI 172064 . G A 6510.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=15.6888;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.25;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:6510,691,0 chrXI 172092 . C T 6280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.0034;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.843;QD=23.97;ReadPosRankSum=1.719;SB=-3.661e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:6280,633,0 chrXI 172796 . C T 5855.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5855,604,0 chrXI 173024 . C T 4824.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4824,517,0 chrXI 173315 . G C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.0732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4649,504,0 chrXI 173411 . G T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.35;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5123,555,0 chrXI 173558 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=3.031;HaplotypeScore=12.6564;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.079;QD=22.63;ReadPosRankSum=1.665;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4708,528,0 chrXI 174509 . C T 6069.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:6069,643,0 chrXI 176335 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.54;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3174,327,0 chrXI 176487 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.10;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2442,255,0 chrXI 176572 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.09;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2827,291,0 chrXI 176582 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.36;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2515,270,0 chrXI 177209 . A T 4834.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.44;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4834,519,0 chrXI 177254 . T C 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=220;Dels=0.00;FS=5.354;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.560;QD=22.85;ReadPosRankSum=2.940;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:5028,549,0 chrXI 177426 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=237;Dels=0.00;FS=7.840;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=2.054;QD=23.17;ReadPosRankSum=2.387;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:5492,592,0 chrXI 177482 . G A 5182.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.99;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5182,544,0 chrXI 177512 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.04;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4492,483,0 chrXI 177551 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.50;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4161,456,0 chrXI 177557 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.210;QD=20.97;ReadPosRankSum=1.715;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4174,447,0 chrXI 177965 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=4.527;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.612;QD=22.48;ReadPosRankSum=1.612;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3956,447,0 chrXI 178177 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=24.78;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3345,351,0 chrXI 178223 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=149;Dels=0.00;FS=6.169;HaplotypeScore=3.2398;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.304;QD=22.31;ReadPosRankSum=0.357;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3324,363,0 chrXI 178243 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.42;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3261,351,0 chrXI 178268 . C A 3149 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.57;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3182,339,0 chrXI 178399 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=23.90;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3044,324,0 chrXI 178417 . T A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.25;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3272,345,0 chrXI 178422 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.24;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3377,349,0 chrXI 178495 . A C 3107 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.99;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3140,339,0 chrXI 178613 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=24.71;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3682,396,0 chrXI 178928 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.62;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4038,432,0 chrXI 179179 . A G 1475 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=60.8900;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1508,162,0 chrXI 179200 . T A 1324 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=22.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1357,141,0 chrXI 179232 . T C 662 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.91;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:75:695,75,0 chrXI 179281 . T C 384 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:45:417,45,0 chrXI 179329 . C T 1073 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1106,117,0 chrXI 179341 . G A 1188 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1221,126,0 chrXI 179358 . T C 1100 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1133,123,0 chrXI 179372 . A G 1102 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=17.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1135,120,0 chrXI 179413 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.50;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1153,120,0 chrXI 179422 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.05;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1188,129,0 chrXI 179509 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.96;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3028,318,0 chrXI 179553 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.823;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.965;QD=23.56;ReadPosRankSum=-0.823;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2907,318,0 chrXI 179688 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3328;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.427;QD=21.28;ReadPosRankSum=1.687;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3299,363,0 chrXI 179703 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.29;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2772,303,0 chrXI 179723 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.55;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3074,321,0 chrXI 179783 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.616;QD=22.11;ReadPosRankSum=1.686;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3339,360,0 chrXI 179928 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.98;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3284,357,0 chrXI 179949 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=17.81;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2989,315,0 chrXI 180074 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.57;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2448,255,0 chrXI 180128 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.157;QD=21.43;ReadPosRankSum=1.701;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2390,267,0 chrXI 180215 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.89;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1425,153,0 chrXI 180297 . A T 1004 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=12.8859;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.73;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1037,114,0 chrXI 180524 . A C 2011 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.83;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2044,222,0 chrXI 180554 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.31;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1686,177,0 chrXI 180583 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.11;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1426,150,0 chrXI 180597 . T C 1229 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.20;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1262,144,0 chrXI 180730 . C A 2338 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.35;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2371,252,0 chrXI 180774 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=27.77;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:3032,310,0 chrXI 181420 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2618,294,0 chrXI 181834 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.670;QD=23.45;ReadPosRankSum=1.676;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2941,324,0 chrXI 181933 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.3427;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.69;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3407,354,0 chrXI 182046 . G A 4916.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=18.8149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4916,502,0 chrXI 182195 . G A 5542.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.71;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5542,603,0 chrXI 182309 . C G 5568.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.39;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,233:238:99:5568,603,0 chrXI 182533 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.41;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2131,231,0 chrXI 182544 . G T 2068 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.00;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2101,228,0 chrXI 182825 . T A 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.162;QD=24.47;ReadPosRankSum=1.547;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1868,195,0 chrXI 182853 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.47;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2235,228,0 chrXI 182950 . T G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.583;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.630;QD=23.93;ReadPosRankSum=2.345;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2857,312,0 chrXI 183657 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.29;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3144,324,0 chrXI 184014 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.48;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3428,369,0 chrXI 184445 . A G 1319 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1352,150,0 chrXI 184691 . T G 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.643;QD=23.42;ReadPosRankSum=1.699;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2492,291,0 chrXI 184745 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.25;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3088,330,0 chrXI 184772 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.05;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3583,370,0 chrXI 184809 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.74;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5046,529,0 chrXI 185280 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2143,237,0 chrXI 185527 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.646;QD=23.69;ReadPosRankSum=1.655;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3208,357,0 chrXI 185734 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=3.006;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.206;QD=20.93;ReadPosRankSum=2.351;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3172,354,0 chrXI 185749 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.16;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2654,276,0 chrXI 186085 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.26;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3150,354,0 chrXI 186216 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.20;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3485,361,0 chrXI 186284 . A G 2503 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.61;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2536,279,0 chrXI 186423 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=24.09;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2779,285,0 chrXI 186438 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.043;QD=22.78;ReadPosRankSum=1.703;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2789,300,0 chrXI 186658 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=4.863;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.577;QD=21.13;ReadPosRankSum=1.708;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3097,336,0 chrXI 186668 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.621;HaplotypeScore=6.4910;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.655;QD=20.56;ReadPosRankSum=2.353;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3178,345,0 chrXI 187243 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2824,300,0 chrXI 187734 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4239,442,0 chrXI 188557 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.998;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.703;QD=22.51;ReadPosRankSum=1.703;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2689,294,0 chrXI 188875 . T A 2441 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.1388;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.70;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2474,258,0 chrXI 188937 . A T 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.144;QD=23.11;ReadPosRankSum=1.696;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2252,237,0 chrXI 189718 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3429,369,0 chrXI 191390 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2585,273,0 chrXI 191520 . T C 2478 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.7004;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.15;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2511,267,0 chrXI 193550 . A T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=125;Dels=0.00;FS=3.038;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.049;QD=23.90;ReadPosRankSum=2.410;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3020,321,0 chrXI 193814 . A G 4691.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.88;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4691,525,0 chrXI 194063 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.41;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3888,400,0 chrXI 194176 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.66;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3239,348,0 chrXI 194206 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.85;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2535,279,0 chrXI 194220 . C T 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.547;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.094;QD=20.58;ReadPosRankSum=1.544;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2729,285,0 chrXI 194270 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=7.406;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.400;QD=21.52;ReadPosRankSum=2.274;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2744,297,0 chrXI 194297 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.62;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3080,324,0 chrXI 194421 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.89;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3440,355,0 chrXI 194470 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=135;Dels=0.00;FS=5.855;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.159;QD=22.87;ReadPosRankSum=2.932;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:3,130:135:99:3120,339,0 chrXI 194564 . A C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.686;QD=22.90;ReadPosRankSum=1.616;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3412,369,0 chrXI 194575 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.22;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3144,327,0 chrXI 194609 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.88;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3075,333,0 chrXI 194709 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.73;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4425,457,0 chrXI 195038 . G T 2616 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.78;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2649,276,0 chrXI 195050 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=95.0207;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.89;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2394,255,0 chrXI 195077 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.67;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2287,237,0 chrXI 195199 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.705;QD=22.28;ReadPosRankSum=1.705;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2907,330,0 chrXI 195226 . A C 3052 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.61;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3085,330,0 chrXI 195269 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.29;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3564,387,0 chrXI 195729 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.4312;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.984;QD=24.24;ReadPosRankSum=1.673;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4291,459,0 chrXI 195771 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.29;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3946,409,0 chrXI 196002 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.61;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3198,354,0 chrXI 196171 . A G 2088 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.75;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2121,225,0 chrXI 196346 . T A 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.284;QD=23.90;ReadPosRankSum=2.357;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3824,423,0 chrXI 196560 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.05;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4115,444,0 chrXI 196565 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.04;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4188,433,0 chrXI 196712 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.8114;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.48;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3415,366,0 chrXI 196916 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4511;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.68;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3599,393,0 chrXI 196937 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.60;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3997,435,0 chrXI 197099 . G T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.79;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4520,478,0 chrXI 197297 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.511;QD=22.33;ReadPosRankSum=1.710;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3506,380,0 chrXI 197329 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.09;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3556,399,0 chrXI 197500 . A G 3102 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.98;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3135,333,0 chrXI 198151 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3418,360,0 chrXI 198833 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0908;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.34;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2950,303,0 chrXI 200384 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=85.6227;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=1.144;QD=21.96;ReadPosRankSum=1.699;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2361,255,0 chrXI 200402 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.07;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1730,180,0 chrXI 201803 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.8773;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.279;QD=21.42;ReadPosRankSum=1.676;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2711,300,0 chrXI 201819 . A T 2501 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.94;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2534,264,0 chrXI 201927 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.55;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2639,276,0 chrXI 201996 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.74;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2136,225,0 chrXI 202082 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.36;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3054,313,0 chrXI 202106 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.341;QD=21.65;ReadPosRankSum=1.702;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2588,276,0 chrXI 202339 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.89;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2985,318,0 chrXI 202432 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.76;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2266,246,0 chrXI 202506 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=25.57;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2130,219,0 chrXI 202593 . A G 1487 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=24.78;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1520,165,0 chrXI 202594 . T A 1546 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=26.20;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1579,165,0 chrXI 202631 . G C 676 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=19.31;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:81:709,81,0 chrXI 203086 . G C 1329 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.46;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1362,150,0 chrXI 203125 . T A 146.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;DP=119;Dels=0.00;FS=12.520;HaplotypeScore=103.0737;MLEAC=1;MLEAF=0.500;MQ=43.54;MQ0=0;MQRankSum=1.181;QD=1.23;ReadPosRankSum=-4.317;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:110,9:119:16:176,0,16 chrXI 203210 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9235;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=24.42;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3256,336,0 chrXI 203268 . A C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=154;Dels=0.00;FS=7.398;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=1.540;QD=23.62;ReadPosRankSum=2.386;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3638,387,0 chrXI 203301 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3087;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.99;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3563,372,0 chrXI 203317 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.74;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3638,393,0 chrXI 203452 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.38;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4092,438,0 chrXI 203486 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7090;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.39;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3906,420,0 chrXI 204122 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2224,231,0 chrXI 204194 . A T 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.564;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.030;QD=25.71;ReadPosRankSum=1.708;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3702,385,0 chrXI 204464 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.61;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5094,535,0 chrXI 204491 . C T 5336.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.9618;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.61;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5336,559,0 chrXI 204566 . A T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.24;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4803,517,0 chrXI 204941 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4027,412,0 chrXI 205160 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.0999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2055,234,0 chrXI 205207 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.53;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1986,207,0 chrXI 205356 . C G 2359 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2392,255,0 chrXI 205481 . G T 2555 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.88;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2588,273,0 chrXI 205525 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.15;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2233,243,0 chrXI 206087 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.557;HaplotypeScore=10.9874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=21.80;ReadPosRankSum=1.713;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4098,471,0 chrXI 206606 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.21;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3229,345,0 chrXI 206732 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.29;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3563,384,0 chrXI 207105 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.41;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4331,468,0 chrXI 207131 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6473;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.96;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4360,477,0 chrXI 207179 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.059;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.789;QD=23.51;ReadPosRankSum=1.694;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4232,468,0 chrXI 207353 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.2694;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.78;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2963,333,0 chrXI 207429 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3301,345,0 chrXI 208114 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.010;DP=99;Dels=0.01;FS=2.599;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.260;QD=21.01;ReadPosRankSum=2.511;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2113,231,0 chrXI 208115 . A T 2122 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.65;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2155,228,0 chrXI 208582 . A C 2463 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.68;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2496,279,0 chrXI 208639 . C A 2065 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.45;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2098,219,0 chrXI 208745 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8714;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.26;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2192,249,0 chrXI 209175 . G A 6074.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=25.20;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6074,622,0 chrXI 209185 . T A 5343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=4.154;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.309;QD=23.33;ReadPosRankSum=1.672;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5343,559,0 chrXI 209311 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=201;Dels=0.00;FS=7.904;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.415;QD=22.25;ReadPosRankSum=2.425;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:4473,507,0 chrXI 209449 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.62;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3459,381,0 chrXI 209467 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=17.57;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2880,306,0 chrXI 209485 . A C 2523 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3999;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=15.77;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2556,285,0 chrXI 209488 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-0.548;QD=15.87;ReadPosRankSum=1.710;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2540,282,0 chrXI 209515 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=15.84;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2504,267,0 chrXI 209743 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6935;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=25.03;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4005,423,0 chrXI 209983 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=2.822;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.699;QD=22.99;ReadPosRankSum=2.412;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3091,336,0 chrXI 210106 . T C 1738 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1771,201,0 chrXI 210267 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.92;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2258,240,0 chrXI 210381 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.67;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2141,240,0 chrXI 210760 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.767;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.894;QD=22.55;ReadPosRankSum=1.716;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4939,561,0 chrXI 210799 . C T 5810.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5810,633,0 chrXI 211081 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.34;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2686,291,0 chrXI 211438 . C T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.87;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4201,436,0 chrXI 211471 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.66;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3302,357,0 chrXI 211477 . A C 3168 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.31;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3201,363,0 chrXI 211951 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.10;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4265,474,0 chrXI 211999 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.37;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3801,399,0 chrXI 212173 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=2.804;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.142;QD=20.42;ReadPosRankSum=2.384;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2340,264,0 chrXI 212189 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.87;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2120,228,0 chrXI 212630 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1631,174,0 chrXI 212874 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3780,391,0 chrXI 212912 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4314,448,0 chrXI 213004 . C G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7367;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.71;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4111,453,0 chrXI 213044 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.57;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4077,427,0 chrXI 213298 . A T 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.036;HaplotypeScore=6.8111;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.784;QD=22.23;ReadPosRankSum=2.385;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3379,360,0 chrXI 213351 . T G 3799.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.59;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3799,420,0 chrXI 213389 . T G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=9.690;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.214;QD=21.96;ReadPosRankSum=2.408;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3953,429,0 chrXI 213480 . T C 2481 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.76;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2514,285,0 chrXI 213501 . T C 2386 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.94;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2419,258,0 chrXI 213552 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=19.39;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1584,171,0 chrXI 213578 . T C 1493 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=62.3099;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=17.99;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1526,174,0 chrXI 213597 . T G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=69.8409;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;MQRankSum=1.601;QD=17.20;ReadPosRankSum=0.767;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1392,156,0 chrXI 213630 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.19;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1376,141,0 chrXI 213680 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=17.1885;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.38;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2008,213,0 chrXI 213714 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=25.04;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2136,228,0 chrXI 213763 . A G 2090 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.88;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2123,222,0 chrXI 213977 . T A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.12;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3617,390,0 chrXI 214537 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1853,198,0 chrXI 214968 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3164,339,0 chrXI 215474 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=148;Dels=0.00;FS=8.854;HaplotypeScore=10.7747;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.086;QD=23.32;ReadPosRankSum=2.382;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3452,369,0 chrXI 215522 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=125;Dels=0.00;FS=10.832;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.315;QD=22.97;ReadPosRankSum=2.944;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2904,309,0 chrXI 215535 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.329;QD=21.66;ReadPosRankSum=1.703;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2654,294,0 chrXI 215560 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.05;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2791,294,0 chrXI 215651 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=135;Dels=0.00;FS=3.490;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.284;QD=23.72;ReadPosRankSum=1.680;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3235,357,0 chrXI 215813 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=3.020;HaplotypeScore=14.4179;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.272;QD=22.70;ReadPosRankSum=2.403;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3609,405,0 chrXI 215962 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.955;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.455;QD=21.34;ReadPosRankSum=1.693;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3820,408,0 chrXI 215965 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.1686;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.732;QD=21.18;ReadPosRankSum=1.713;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3770,399,0 chrXI 216046 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.68;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3425,357,0 chrXI 216382 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3304,342,0 chrXI 216541 . A G 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=8.081;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.019;QD=24.32;ReadPosRankSum=2.425;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4816,514,0 chrXI 216646 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.03;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2604,297,0 chrXI 216707 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.609;QD=21.51;ReadPosRankSum=1.404;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3216,335,0 chrXI 216709 . A C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.10;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3238,357,0 chrXI 216788 . A T 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.585;QD=24.20;ReadPosRankSum=1.703;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2889,303,0 chrXI 216915 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=22.80;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2290,240,0 chrXI 216924 . A G 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=98;Dels=0.00;FS=13.527;HaplotypeScore=3.4907;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=-0.802;QD=19.53;ReadPosRankSum=2.824;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:3,94:98:99:1947,210,0 chrXI 216939 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.75;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1777,183,0 chrXI 216973 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=19.04;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2185,231,0 chrXI 216985 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=18.26;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2133,228,0 chrXI 217056 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=99.7065;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=15.57;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1792,189,0 chrXI 217225 . G T 2615 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.94;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2648,285,0 chrXI 217298 . C A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=26.39;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4091,421,0 chrXI 217457 . A T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.9215;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.94;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3352,354,0 chrXI 217514 . A T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2374;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.58;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3368,354,0 chrXI 217814 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.21;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3737,402,0 chrXI 218177 . C T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7902;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4591,481,0 chrXI 218544 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2654,279,0 chrXI 218728 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.30;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3840,400,0 chrXI 218804 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.91;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3512,378,0 chrXI 218861 . G C 4461.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4461,475,0 chrXI 218948 . T A 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=119;Dels=0.00;FS=4.034;HaplotypeScore=8.3342;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.626;QD=20.95;ReadPosRankSum=1.674;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2526,245,0 chrXI 218976 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.01;FS=3.039;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.490;QD=20.43;ReadPosRankSum=2.410;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2566,285,0 chrXI 219042 . T G 2669 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2702,294,0 chrXI 219155 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.25;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3081,324,0 chrXI 219404 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.04;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2389,255,0 chrXI 219413 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.02;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2415,267,0 chrXI 219454 . G C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.03;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3370,363,0 chrXI 219481 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.81;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3666,382,0 chrXI 219665 . A T 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=2.954;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.169;QD=22.40;ReadPosRankSum=2.370;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2810,291,0 chrXI 219692 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=21.83;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2805,288,0 chrXI 219742 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.99;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2652,282,0 chrXI 219747 . C T 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-1.468;QD=20.38;ReadPosRankSum=0.383;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2723,269,0 chrXI 219762 . A T 3009 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.80;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3042,321,0 chrXI 219829 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=18.59;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1985,216,0 chrXI 219842 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=18.12;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1845,198,0 chrXI 219865 . A C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-1.205;QD=18.82;ReadPosRankSum=1.694;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1764,186,0 chrXI 219881 . A G 1561 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=83.0556;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=16.78;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1594,177,0 chrXI 219986 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=3.641;HaplotypeScore=9.0543;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.562;QD=17.97;ReadPosRankSum=1.639;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1399,150,0 chrXI 220092 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=0.178;QD=23.55;ReadPosRankSum=1.667;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,106:110:99:2624,288,0 chrXI 220132 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.66;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2622,282,0 chrXI 220166 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.9648;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=26.10;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3289,345,0 chrXI 220273 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=6.849;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.113;QD=23.72;ReadPosRankSum=2.417;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3582,384,0 chrXI 220310 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.39;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3233,354,0 chrXI 220315 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=163;Dels=0.00;FS=12.874;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-1.883;QD=18.10;ReadPosRankSum=3.405;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:2984,336,0 chrXI 220323 . C A 2846 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.68;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2879,315,0 chrXI 220573 . G A 5227.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.66;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5227,541,0 chrXI 220608 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.9142;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.583;QD=24.63;ReadPosRankSum=1.715;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5123,567,0 chrXI 220647 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.00;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5279,597,0 chrXI 220701 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=2.859;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.555;QD=24.01;ReadPosRankSum=2.391;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:5066,576,0 chrXI 220799 . C G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1524;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.93;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3913,426,0 chrXI 220819 . C A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.17;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4235,442,0 chrXI 220881 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9391;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.15;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3611,387,0 chrXI 221014 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.94;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1667,171,0 chrXI 221236 . G T 1485 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=27.50;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1518,159,0 chrXI 221455 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.21;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4340,465,0 chrXI 221472 . A C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=4.793;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.247;QD=23.13;ReadPosRankSum=1.714;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4626,510,0 chrXI 221497 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.35;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4530,483,0 chrXI 221683 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=176;Dels=0.00;FS=16.856;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.491;QD=22.23;ReadPosRankSum=2.914;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3912,420,0 chrXI 221752 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.40;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3674,396,0 chrXI 221820 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2227;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.76;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2924,306,0 chrXI 221896 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=128;Dels=0.00;FS=4.600;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.341;QD=23.13;ReadPosRankSum=1.704;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2994,333,0 chrXI 222020 . A T 2594 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4542;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=21.98;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2627,276,0 chrXI 222033 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.73;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2619,288,0 chrXI 222042 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.204;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.255;QD=21.47;ReadPosRankSum=1.705;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2802,303,0 chrXI 223086 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.21;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3035,330,0 chrXI 223233 . T C 2549 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.1890;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.39;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2582,282,0 chrXI 223281 . A C 2526 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.05;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2559,297,0 chrXI 223330 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=118;Dels=0.01;FS=12.899;HaplotypeScore=22.6728;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.537;QD=23.30;ReadPosRankSum=3.382;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:99:2782,294,0 chrXI 223560 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.79;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4127,430,0 chrXI 223789 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=7.383;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.010;QD=22.90;ReadPosRankSum=2.411;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2987,336,0 chrXI 224066 . T A 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.378;QD=25.79;ReadPosRankSum=1.273;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3637,384,0 chrXI 224949 . A T 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=162;Dels=0.00;FS=9.700;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.106;QD=21.75;ReadPosRankSum=2.944;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3523,384,0 chrXI 225168 . G A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.0207;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.96;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4744,516,0 chrXI 225480 . T G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.72;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3780,411,0 chrXI 225552 . T A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.7173;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.03;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4075,435,0 chrXI 225609 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=195;Dels=0.00;FS=2.751;HaplotypeScore=14.9563;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.361;QD=22.39;ReadPosRankSum=2.374;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4367,480,0 chrXI 225819 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.30;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4549,469,0 chrXI 225834 . A T 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=4.416;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.313;QD=21.64;ReadPosRankSum=-0.018;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4069,456,0 chrXI 225909 . T A 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=9.987;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.037;QD=23.70;ReadPosRankSum=2.415;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3341,354,0 chrXI 226045 . T A 2859 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.69;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2892,300,0 chrXI 226260 . T C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=129;Dels=0.00;FS=6.042;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.208;QD=20.87;ReadPosRankSum=2.944;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:3,123:129:99:2725,303,0 chrXI 226659 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4491;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.53;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2691,288,0 chrXI 226952 . T C 6855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.304;QD=24.48;ReadPosRankSum=1.670;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:1,278:280:99:6855,742,0 chrXI 227012 . C T 8654.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=22.6529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.30;SB=-4.639e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:8654,898,0 chrXI 227319 . C T 7527.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=4.9997;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.51;SB=-4.262e+03 GT:AD:DP:GQ:PL 1/1:0,348:350:99:7527,790,0 chrXI 227322 . C T 7435.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.54;SB=-4.383e+03 GT:AD:DP:GQ:PL 1/1:0,360:362:99:7435,787,0 chrXI 227403 . T C 5779.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.477;DP=327;Dels=0.00;FS=0.959;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.874;QD=17.67;ReadPosRankSum=5.482;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:17,308:327:99:5779,642,0 chrXI 227405 . A C 5954.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297;DP=322;Dels=0.00;FS=3.108;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.914;QD=18.49;ReadPosRankSum=7.052;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:21,301:322:99:5954,631,0 chrXI 227408 . C A 6206.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.739;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=2.164;QD=19.15;ReadPosRankSum=6.406;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:16,306:324:99:6206,637,0 chrXI 227436 . T C 5298.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=8.1497;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.27;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:5298,588,0 chrXI 227625 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=23.23;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3275,339,0 chrXI 227751 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=3.057;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.717;QD=23.24;ReadPosRankSum=2.283;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1776,192,0 chrXI 227793 . A G 2437 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.37;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2470,264,0 chrXI 227955 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.69;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4239,439,0 chrXI 228015 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=6.907;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.617;QD=22.66;ReadPosRankSum=2.395;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4125,462,0 chrXI 228147 . C A 5906.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.8742;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.91;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5906,628,0 chrXI 228339 . G A 7302.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-3.814e+03 GT:AD:DP:GQ:PL 1/1:0,296:299:99:7302,754,0 chrXI 228480 . A G 7050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=307;Dels=0.00;FS=6.271;HaplotypeScore=21.9598;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.094;QD=22.96;ReadPosRankSum=2.400;SB=-3.776e+03 GT:AD:DP:GQ:PL 1/1:2,300:307:99:7050,763,0 chrXI 228638 . C A 5088.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.7751;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5088,526,0 chrXI 228782 . A T 2256 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.79;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2289,228,0 chrXI 229405 . G T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.47;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3521,361,0 chrXI 229432 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2247;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.32;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3303,343,0 chrXI 229929 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.43;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3209,333,0 chrXI 230068 . A G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=116;Dels=0.00;FS=4.075;HaplotypeScore=7.3840;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.678;QD=18.98;ReadPosRankSum=1.702;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2235,255,0 chrXI 230092 . C A 2910 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.56;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2943,301,0 chrXI 230159 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.707;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.064;QD=21.45;ReadPosRankSum=1.700;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2371,270,0 chrXI 230442 . G T 2945 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.14;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2978,321,0 chrXI 231013 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.69;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2592,291,0 chrXI 231216 . T C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8640;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.012;QD=22.30;ReadPosRankSum=1.704;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2843,318,0 chrXI 231248 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2741,303,0 chrXI 231393 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.90;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3012,336,0 chrXI 231462 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.75;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2764,291,0 chrXI 231764 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.95;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1479,156,0 chrXI 231791 . A T 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.306;QD=22.53;ReadPosRankSum=1.664;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1182,126,0 chrXI 231860 . A G 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.495;QD=22.33;ReadPosRankSum=1.650;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:971,108,0 chrXI 231899 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.03;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:811,84,0 chrXI 231902 . C A 785 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.22;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:818,87,0 chrXI 231929 . T A 663 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.09;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:696,75,0 chrXI 232523 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.25;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1969,204,0 chrXI 232562 . T A 604 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=11.62;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:72:637,72,0 chrXI 232563 . A T 557 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=10.92;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:590,69,0 chrXI 232567 . T C 796 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-2.217;QD=15.02;ReadPosRankSum=2.170;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:90:829,90,0 chrXI 232667 . A T 1660 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=18.65;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1693,177,0 chrXI 232739 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=88;Dels=0.00;FS=2.525;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.322;QD=22.62;ReadPosRankSum=2.874;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:2024,222,0 chrXI 232793 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.01;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2554,267,0 chrXI 232838 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=105;Dels=0.00;FS=3.042;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.645;QD=20.18;ReadPosRankSum=2.403;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2152,234,0 chrXI 232839 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.12;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2229,237,0 chrXI 232919 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.65;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2903,327,0 chrXI 233252 . T G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.911;QD=23.21;ReadPosRankSum=1.712;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4038,453,0 chrXI 233436 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.25;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4571,484,0 chrXI 233962 . A G 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.358;QD=21.83;ReadPosRankSum=1.673;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1321,144,0 chrXI 234187 . T C 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.251;QD=23.39;ReadPosRankSum=1.636;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:96:875,96,0 chrXI 234252 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.84;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1474,156,0 chrXI 234299 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.32;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1248,138,0 chrXI 234378 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.91;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2275,237,0 chrXI 234462 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.34;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2577,270,0 chrXI 234818 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.4766;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=1.715;QD=20.87;ReadPosRankSum=-0.041;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4362,465,0 chrXI 234821 . T C 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=221;Dels=0.00;FS=5.923;HaplotypeScore=10.5848;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.581;QD=19.33;ReadPosRankSum=2.949;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:4273,468,0 chrXI 234921 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.698;QD=20.71;ReadPosRankSum=1.715;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4163,459,0 chrXI 234932 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.9555;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.84;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4273,462,0 chrXI 234968 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.28;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3638,387,0 chrXI 234980 . G C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.35;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3579,390,0 chrXI 235023 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=194;Dels=0.00;FS=3.740;HaplotypeScore=13.7202;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.982;QD=22.14;ReadPosRankSum=0.589;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4296,422,0 chrXI 235310 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=188;Dels=0.00;FS=9.821;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;MQRankSum=-2.321;QD=15.62;ReadPosRankSum=2.899;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:2970,318,0 chrXI 235318 . G A 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=122.3797;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;MQRankSum=0.130;QD=15.08;ReadPosRankSum=-0.779;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2446,252,0 chrXI 235346 . C T 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=122;Dels=0.00;FS=3.729;HaplotypeScore=2.9599;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;MQRankSum=-0.323;QD=11.51;ReadPosRankSum=-1.732;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,117:122:99:1437,153,0 chrXI 235358 . T C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=3.171;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-1.464;QD=6.41;ReadPosRankSum=1.464;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:1443,168,0 chrXI 235370 . T C 442.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.677;DP=210;Dels=0.00;FS=11.565;HaplotypeScore=5.6721;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=0;MQRankSum=-2.417;QD=2.10;ReadPosRankSum=-11.513;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:146,64:210:99:472,0,807 chrXI 235387 . A C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;MQRankSum=1.023;QD=8.51;ReadPosRankSum=1.711;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:1463,165,0 chrXI 235424 . T C 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=4.165;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=0.073;QD=16.96;ReadPosRankSum=1.649;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2866,327,0 chrXI 235446 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.36;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3645,382,0 chrXI 235565 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=24.68;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3653,396,0 chrXI 235797 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.39;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2536,264,0 chrXI 235819 . A G 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.005;QD=22.62;ReadPosRankSum=1.697;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2295,258,0 chrXI 235951 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=9.873;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.219;QD=23.45;ReadPosRankSum=2.824;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2308,249,0 chrXI 236044 . T A 2512 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0950;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.05;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2545,279,0 chrXI 236095 . C A 3029 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.03;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3062,321,0 chrXI 236124 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.117;QD=18.05;ReadPosRankSum=1.706;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2452,261,0 chrXI 236129 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.12;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2552,267,0 chrXI 236208 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.97;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3396,354,0 chrXI 236227 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.22;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3255,363,0 chrXI 236254 . A G 3138 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.64;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3171,357,0 chrXI 236335 . A C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=3.033;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.553;QD=22.95;ReadPosRankSum=1.714;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4452,489,0 chrXI 236491 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.01;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4577,478,0 chrXI 236539 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2674;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.00;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4725,510,0 chrXI 236875 . G T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.01;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4280,465,0 chrXI 236884 . A T 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=174;Dels=0.00;FS=5.850;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.775;QD=22.17;ReadPosRankSum=2.856;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3858,408,0 chrXI 237017 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.03;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3869,400,0 chrXI 237250 . A T 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.389;QD=22.12;ReadPosRankSum=1.701;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2488,261,0 chrXI 237287 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=5.356;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.205;QD=18.91;ReadPosRankSum=1.568;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2435,264,0 chrXI 237351 . C G 2687 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.33;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2720,291,0 chrXI 237391 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=8.8736;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.27;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2649,288,0 chrXI 237525 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.12;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3130,327,0 chrXI 237528 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=5.064;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.402;QD=21.18;ReadPosRankSum=1.707;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2956,315,0 chrXI 237610 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.776;QD=23.58;ReadPosRankSum=1.708;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3419,366,0 chrXI 237666 . T G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=140;Dels=0.00;FS=8.656;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.519;QD=24.23;ReadPosRankSum=2.415;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3392,366,0 chrXI 237829 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8289;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2868,303,0 chrXI 238513 . C G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.64;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3286,375,0 chrXI 238663 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.94;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3816,402,0 chrXI 238684 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=26.01;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4058,421,0 chrXI 239004 . C T 162.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:21:195,21,0 chrXI 239120 . T C 1599 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.082;QD=25.38;ReadPosRankSum=1.567;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1632,180,0 chrXI 239145 . T C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.386;QD=23.76;ReadPosRankSum=1.683;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1720,186,0 chrXI 239182 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.93;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2094,246,0 chrXI 239209 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.84;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2513,270,0 chrXI 239221 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9847;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.80;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2904,306,0 chrXI 239573 . T C 5182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.089;QD=23.99;ReadPosRankSum=1.684;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5182,561,0 chrXI 239599 . T A 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=220;Dels=0.00;FS=2.927;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.285;QD=23.51;ReadPosRankSum=2.383;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5173,567,0 chrXI 239865 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.048;QD=23.23;ReadPosRankSum=1.689;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3787,417,0 chrXI 239982 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.55;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3789,397,0 chrXI 240139 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.404;DP=161;Dels=0.00;FS=8.332;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=23.21;ReadPosRankSum=3.339;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:3737,393,0 chrXI 240270 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.734;QD=22.82;ReadPosRankSum=1.671;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3879,423,0 chrXI 240429 . A G 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=3.030;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.177;QD=23.86;ReadPosRankSum=2.386;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4628,498,0 chrXI 240637 . G A 6958.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=24.59;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6958,736,0 chrXI 240685 . A G 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.996;DP=255;Dels=0.00;FS=36.436;HaplotypeScore=679.7624;MLEAC=1;MLEAF=0.500;MQ=44.88;MQ0=0;MQRankSum=5.043;QD=0.59;ReadPosRankSum=-7.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,23:255:99:181,0,2540 chrXI 241054 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.20;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2937,312,0 chrXI 241060 . T C 2867 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.4866;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.40;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2900,312,0 chrXI 241285 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.69;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2983,339,0 chrXI 241344 . C A 3059 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.33;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3092,330,0 chrXI 241359 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.48;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2933,303,0 chrXI 241374 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.63;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3126,319,0 chrXI 241418 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.62;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2863,294,0 chrXI 241444 . G C 3042 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.69;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3075,330,0 chrXI 241660 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=4.159;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.676;QD=22.71;ReadPosRankSum=1.695;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4246,486,0 chrXI 241692 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.479;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.8537;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.677;QD=22.73;ReadPosRankSum=0.700;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4274,471,0 chrXI 241961 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.09;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2999,312,0 chrXI 241962 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.29;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3051,318,0 chrXI 242032 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8604;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.043;QD=23.49;ReadPosRankSum=1.710;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3758,402,0 chrXI 242387 . A G 5647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.540;QD=22.59;ReadPosRankSum=1.704;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5647,624,0 chrXI 242407 . C T 5958.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.00;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:5958,622,0 chrXI 242473 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.58;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4515,475,0 chrXI 242634 . G C 2869 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1238;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.57;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2902,312,0 chrXI 242651 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.69;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2598,279,0 chrXI 242669 . A G 2630 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.92;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2663,291,0 chrXI 242695 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.10;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2727,291,0 chrXI 242705 . C A 2762 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.31;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2795,288,0 chrXI 242919 . G A 1277 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1310,141,0 chrXI 243178 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.98;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1247,132,0 chrXI 243211 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.04;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1211,132,0 chrXI 243364 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.95;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3426,357,0 chrXI 243628 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.1456;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=1.566;QD=23.09;ReadPosRankSum=1.677;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2919,324,0 chrXI 243838 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4023,415,0 chrXI 244000 . C G 4803.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.3708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4803,549,0 chrXI 244570 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.6435;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.79;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3132,339,0 chrXI 244906 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=7.943;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=22.01;ReadPosRankSum=2.414;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3093,339,0 chrXI 245474 . G A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DP=128;Dels=0.00;FS=3.795;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.832;QD=24.63;ReadPosRankSum=0.614;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3186,321,0 chrXI 245804 . A T 1860 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1893,198,0 chrXI 245907 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.21;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1253,144,0 chrXI 246068 . G A 1128 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=12.1949;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.51;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1161,126,0 chrXI 246115 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=80.4411;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=0.28;SB=-5.577e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:6:57,6,0 chrXI 246131 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=14.71;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1607,186,0 chrXI 246336 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.03;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4998,520,0 chrXI 246578 . G C 7205.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=28.5336;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.55;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:0,301:306:99:7205,784,0 chrXI 246698 . A G 6126.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=297;Dels=0.00;FS=3.622;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.939;QD=20.63;ReadPosRankSum=1.697;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:1,296:297:99:6126,655,0 chrXI 246699 . A C 6089.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=299;Dels=0.00;FS=3.551;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.991;QD=20.36;ReadPosRankSum=1.674;SB=-3.719e+03 GT:AD:DP:GQ:PL 1/1:1,298:299:99:6089,655,0 chrXI 246708 . C T 6148.01 SnpCluster AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.58;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6148,640,0 chrXI 246716 . T C 6247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=324;Dels=0.00;FS=2.951;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=1.079;QD=19.28;ReadPosRankSum=2.389;SB=-3.807e+03 GT:AD:DP:GQ:PL 1/1:2,322:324:99:6247,687,0 chrXI 246807 . A G 6264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=283;Dels=0.00;FS=5.528;HaplotypeScore=16.0984;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.926;QD=22.13;ReadPosRankSum=2.968;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:3,280:283:99:6264,702,0 chrXI 246986 . T A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=19.7581;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.88;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3588,384,0 chrXI 247739 . T A 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=1.520;QD=20.70;ReadPosRankSum=0.283;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2062,216,0 chrXI 247741 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=20.24;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1976,216,0 chrXI 247756 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=21.23;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2092,216,0 chrXI 247793 . T C 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=96;Dels=0.00;FS=13.780;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=0.379;QD=19.09;ReadPosRankSum=2.843;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1866,216,0 chrXI 247813 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=20.36;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2110,222,0 chrXI 247876 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=18.66;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1824,192,0 chrXI 247882 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=18.75;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1833,192,0 chrXI 247896 . A G 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=70.1558;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-1.582;QD=15.64;ReadPosRankSum=1.694;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1472,165,0 chrXI 247900 . A T 1396 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=72.2491;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=16.42;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1429,153,0 chrXI 247927 . G T 1116 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=13.29;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1149,123,0 chrXI 247951 . G T 875 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=11.08;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:908,102,0 chrXI 247983 . A T 1225 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=12.25;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1258,132,0 chrXI 247987 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=11.98;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1303,141,0 chrXI 248004 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=14.68;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1868,198,0 chrXI 248028 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=17.22;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2444,264,0 chrXI 248307 . G C 1925 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=12.92;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:1958,216,0 chrXI 248310 . C A 1935 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=12.99;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:1968,210,0 chrXI 248315 . A G 1827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.067;QD=11.86;ReadPosRankSum=-1.507;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1860,171,0 chrXI 248487 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7382;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.10;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3581,396,0 chrXI 248663 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.50;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3601,381,0 chrXI 248727 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1063;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.524;QD=21.41;ReadPosRankSum=2.321;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2495,270,0 chrXI 249055 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.46;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2027,228,0 chrXI 249447 . T A 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.246;QD=24.72;ReadPosRankSum=1.711;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4054,447,0 chrXI 249660 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.00;FS=2.775;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.750;QD=24.11;ReadPosRankSum=2.395;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3327,360,0 chrXI 249723 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.65;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2728,300,0 chrXI 249846 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.87;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2298,252,0 chrXI 249855 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.250;QD=20.25;ReadPosRankSum=1.702;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2362,255,0 chrXI 249882 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.81;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2489,267,0 chrXI 249915 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.637;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.595;QD=21.26;ReadPosRankSum=1.655;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2882,309,0 chrXI 249960 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=121;Dels=0.00;FS=2.996;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.600;QD=23.06;ReadPosRankSum=2.328;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2823,318,0 chrXI 250094 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.72;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2832,291,0 chrXI 250113 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.26;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2435,267,0 chrXI 250134 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.89;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2917,309,0 chrXI 250275 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.11;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4118,433,0 chrXI 250309 . T G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.425;QD=24.46;ReadPosRankSum=1.712;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4133,471,0 chrXI 250932 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=199;Dels=0.00;FS=2.836;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.334;QD=20.81;ReadPosRankSum=2.349;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4142,465,0 chrXI 251021 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3923,423,0 chrXI 251058 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.04;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3366,348,0 chrXI 251136 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.28;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3199,339,0 chrXI 251520 . A G 2976 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.67;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3009,348,0 chrXI 251664 . C A 3141 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.5769;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.27;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3174,348,0 chrXI 251703 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=181;Dels=0.00;FS=6.389;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.197;QD=24.47;ReadPosRankSum=2.409;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4429,474,0 chrXI 251749 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4496,469,0 chrXI 251928 . C T 5295.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.96;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5295,556,0 chrXI 252123 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.116;QD=24.27;ReadPosRankSum=1.690;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3956,412,0 chrXI 252204 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.7100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2443,264,0 chrXI 252294 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2927,312,0 chrXI 252326 . C G 2548 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2581,294,0 chrXI 252870 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.204;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.551;QD=22.38;ReadPosRankSum=1.652;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2943,333,0 chrXI 252887 . A G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.015;QD=22.64;ReadPosRankSum=2.409;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2772,297,0 chrXI 252966 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.32;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2976,312,0 chrXI 253117 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.24;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2481,264,0 chrXI 253234 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.18;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2872,306,0 chrXI 253350 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=97;Dels=0.00;FS=2.467;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.386;QD=22.76;ReadPosRankSum=2.907;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2241,249,0 chrXI 253749 . C A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3255,334,0 chrXI 253838 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.53;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2598,294,0 chrXI 253995 . C A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.13;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3710,393,0 chrXI 254023 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.45;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4034,432,0 chrXI 254141 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0214;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.93;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4953,520,0 chrXI 254328 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=25.47;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4585,487,0 chrXI 254342 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=23.60;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4319,454,0 chrXI 254358 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.79;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3792,417,0 chrXI 254579 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=153;Dels=0.00;FS=8.430;HaplotypeScore=12.6608;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.138;QD=23.10;ReadPosRankSum=3.356;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3535,384,0 chrXI 254951 . G C 3382.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.01;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3382,369,0 chrXI 254966 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=149;Dels=0.00;FS=3.030;HaplotypeScore=8.6528;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.844;QD=21.15;ReadPosRankSum=2.349;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3184,360,0 chrXI 255077 . G A 5192.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.22;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5192,547,0 chrXI 255600 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.62;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1742,186,0 chrXI 256639 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3416,384,0 chrXI 256761 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=2.923;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.419;QD=23.15;ReadPosRankSum=2.361;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3866,417,0 chrXI 257249 . C A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.74;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4543,492,0 chrXI 257258 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.87;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4486,475,0 chrXI 257878 . T A 3140 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.36;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3173,333,0 chrXI 257882 . T A 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.802;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.361;QD=21.49;ReadPosRankSum=1.684;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3128,319,0 chrXI 257966 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=19.43;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3259,357,0 chrXI 257970 . C A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=20.02;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3364,363,0 chrXI 257993 . G T 3016 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=17.04;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3049,330,0 chrXI 258001 . T A 2872 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-0.795;QD=16.89;ReadPosRankSum=1.691;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2905,306,0 chrXI 258002 . C A 2854 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=16.59;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:2887,306,0 chrXI 258466 . G A 7812.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=18.9963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.72;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:7812,808,0 chrXI 258604 . A T 6579.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.69;SB=-3.784e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6579,691,0 chrXI 258873 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.1231;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.971;QD=21.05;ReadPosRankSum=1.712;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3642,390,0 chrXI 259285 . C A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4857,543,0 chrXI 259426 . T A 2346 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=16.52;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2379,255,0 chrXI 259465 . T C 2881 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.78;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2914,336,0 chrXI 259753 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.71;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2306,249,0 chrXI 259774 . T A 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.054;QD=22.46;ReadPosRankSum=1.694;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2099,216,0 chrXI 259792 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.10;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2227,234,0 chrXI 260006 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=4.449;HaplotypeScore=9.9596;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=0.370;QD=23.02;ReadPosRankSum=1.703;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2749,297,0 chrXI 260037 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.76;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2275,249,0 chrXI 260038 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=22.53;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2421,252,0 chrXI 260152 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.16;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2926,312,0 chrXI 260236 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.07;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2381,246,0 chrXI 260245 . A C 2008 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=17.61;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2041,231,0 chrXI 260276 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.18;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2596,267,0 chrXI 260286 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.419;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.399;QD=16.87;ReadPosRankSum=1.665;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2682,291,0 chrXI 260406 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.51;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2937,333,0 chrXI 260780 . A G 3071 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=120.4466;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=22.09;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3104,339,0 chrXI 260911 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;MQRankSum=-0.887;QD=17.39;ReadPosRankSum=1.705;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2241,246,0 chrXI 260914 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=17.29;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2177,240,0 chrXI 260953 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=137;Dels=0.00;FS=10.490;HaplotypeScore=114.8207;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=-0.009;QD=14.92;ReadPosRankSum=2.395;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2077,234,0 chrXI 260961 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=5.458;HaplotypeScore=114.7591;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-1.197;QD=15.98;ReadPosRankSum=1.704;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1998,213,0 chrXI 261069 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=6.4531;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.65;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2434,255,0 chrXI 261093 . A T 2507 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.58;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2540,267,0 chrXI 261359 . T C 4917.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.7509;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.76;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4917,552,0 chrXI 261608 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=2.955;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.779;QD=22.24;ReadPosRankSum=2.424;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4337,480,0 chrXI 261680 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=217;Dels=0.00;FS=2.889;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.634;QD=20.39;ReadPosRankSum=2.415;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4424,489,0 chrXI 261697 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.89;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4509,466,0 chrXI 262136 . C A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.69;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3407,363,0 chrXI 262447 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=189;Dels=0.00;FS=12.469;HaplotypeScore=10.4962;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.686;QD=23.21;ReadPosRankSum=3.413;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:4,183:189:99:4387,477,0 chrXI 262474 . T C 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=199;Dels=0.00;FS=3.000;HaplotypeScore=15.9971;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.271;QD=22.32;ReadPosRankSum=2.424;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:2,193:199:99:4441,492,0 chrXI 262597 . A G 5172.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.1160;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.63;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5172,576,0 chrXI 262636 . A G 4959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.098;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.507;QD=24.67;ReadPosRankSum=1.697;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4959,540,0 chrXI 263047 . G A 4646.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.25;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4646,487,0 chrXI 263187 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.53;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4146,433,0 chrXI 263243 . C A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.17;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4124,453,0 chrXI 263834 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.25;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4825,505,0 chrXI 263873 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.424;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.673;QD=22.51;ReadPosRankSum=1.693;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4006,447,0 chrXI 263921 . T A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.17;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4055,429,0 chrXI 263970 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4175,424,0 chrXI 264078 . A G 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=230;Dels=0.00;FS=7.969;HaplotypeScore=18.9731;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.935;QD=23.63;ReadPosRankSum=2.385;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:2,225:230:99:5434,597,0 chrXI 264216 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3861,426,0 chrXI 264387 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3524,375,0 chrXI 264567 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3004,312,0 chrXI 264611 . T G 2541 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2574,279,0 chrXI 264824 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3250,354,0 chrXI 264974 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4325,465,0 chrXI 265051 . C G 4324.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.29;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4324,471,0 chrXI 265175 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.454;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.295;QD=22.76;ReadPosRankSum=1.648;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4735,522,0 chrXI 265253 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=192;Dels=0.00;FS=2.879;HaplotypeScore=19.1307;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.217;QD=22.59;ReadPosRankSum=2.424;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4338,465,0 chrXI 265290 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.37;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4137,439,0 chrXI 265405 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9847;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3650,396,0 chrXI 265522 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.66;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4464,466,0 chrXI 265685 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=151;Dels=0.00;FS=14.491;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.618;QD=19.74;ReadPosRankSum=2.940;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3013,339,0 chrXI 265911 . C T 533 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:63:566,63,0 chrXI 265955 . G A 616 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.00;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:649,69,0 chrXI 266175 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.50;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2373,267,0 chrXI 266211 . A G 2520 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.91;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2553,279,0 chrXI 266376 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.04;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3141,339,0 chrXI 266462 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=135;Dels=0.00;FS=9.543;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.651;QD=21.25;ReadPosRankSum=2.358;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2902,333,0 chrXI 266523 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=2.882;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.341;QD=21.04;ReadPosRankSum=2.406;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2389,255,0 chrXI 266528 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.45;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2350,252,0 chrXI 266610 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.51;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2239,246,0 chrXI 266664 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.65;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2449,258,0 chrXI 266730 . A T 2744 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.49;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2777,297,0 chrXI 266841 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.97;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2767,300,0 chrXI 267171 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.2778;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.20;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3527,369,0 chrXI 267180 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=152;Dels=0.00;FS=5.415;HaplotypeScore=4.4379;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.132;QD=22.05;ReadPosRankSum=2.689;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3351,366,0 chrXI 267501 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=21.51;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2206,237,0 chrXI 267504 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=20.79;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2154,237,0 chrXI 267528 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.83;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2324,249,0 chrXI 267597 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2887,312,0 chrXI 267639 . T A 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8209;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.286;QD=23.84;ReadPosRankSum=1.877;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2799,303,0 chrXI 267702 . A T 2798 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.73;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2831,306,0 chrXI 267712 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.86;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3142,324,0 chrXI 267738 . A G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=127;Dels=0.00;FS=3.452;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.257;QD=22.05;ReadPosRankSum=1.704;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2833,300,0 chrXI 267822 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.38;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3429,352,0 chrXI 268601 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2915,309,0 chrXI 268802 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2816,297,0 chrXI 269100 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=117;Dels=0.00;FS=3.027;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.265;QD=22.94;ReadPosRankSum=2.386;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2717,291,0 chrXI 269184 . A T 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=9.480;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.752;QD=25.63;ReadPosRankSum=2.414;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3563,370,0 chrXI 269383 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=177;Dels=0.00;FS=6.349;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.668;QD=23.05;ReadPosRankSum=2.422;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4079,462,0 chrXI 269480 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.131;QD=21.25;ReadPosRankSum=1.706;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2859,312,0 chrXI 269500 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.29;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2588,270,0 chrXI 269524 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.40;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2664,273,0 chrXI 269563 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.75;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2771,297,0 chrXI 269826 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.86;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2662,288,0 chrXI 270096 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=2.672;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.827;QD=23.88;ReadPosRankSum=2.402;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3725,420,0 chrXI 270178 . G C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.73;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4069,438,0 chrXI 270231 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=178;Dels=0.00;FS=6.720;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.495;QD=20.87;ReadPosRankSum=2.337;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3714,417,0 chrXI 270342 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=21.2202;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.07;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4216,465,0 chrXI 270852 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.5744;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.159;QD=24.82;ReadPosRankSum=1.705;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3185,348,0 chrXI 270883 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.197;QD=25.04;ReadPosRankSum=1.707;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3430,381,0 chrXI 270966 . C A 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=118;Dels=0.00;FS=7.091;HaplotypeScore=11.5519;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.410;QD=22.44;ReadPosRankSum=2.408;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2681,291,0 chrXI 270990 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=2.879;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.494;QD=23.66;ReadPosRankSum=2.409;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2920,309,0 chrXI 271016 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.59;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3083,316,0 chrXI 271048 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.77;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3418,366,0 chrXI 271129 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.75;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2991,321,0 chrXI 271156 . T G 2591 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.34;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2624,282,0 chrXI 271321 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.28;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1473,162,0 chrXI 271323 . T A 1513 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.01;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1546,159,0 chrXI 271532 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.98;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2342,249,0 chrXI 271548 . A C 2157 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=16.72;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2190,243,0 chrXI 271663 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.75;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3015,315,0 chrXI 271696 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.81;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3403,360,0 chrXI 271718 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.49;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3509,387,0 chrXI 272205 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.17;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3373,351,0 chrXI 272320 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.91;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2711,279,0 chrXI 272494 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.31;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2611,267,0 chrXI 272511 . G T 2294 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.67;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2327,246,0 chrXI 272563 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.15;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2934,306,0 chrXI 272811 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.257;QD=24.57;ReadPosRankSum=1.668;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2687,285,0 chrXI 272960 . G C 3059 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3092,339,0 chrXI 273068 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3473,361,0 chrXI 273176 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.54;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2764,288,0 chrXI 273206 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.087;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.246;QD=22.81;ReadPosRankSum=1.702;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2656,288,0 chrXI 273558 . T A 4965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.2666;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.367;QD=23.76;ReadPosRankSum=1.666;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4965,540,0 chrXI 273860 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.163;DP=198;Dels=0.00;FS=19.806;HaplotypeScore=8.2074;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.436;QD=21.98;ReadPosRankSum=4.141;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:6,190:198:99:4352,471,0 chrXI 273882 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=212;Dels=0.00;FS=6.377;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.782;QD=23.02;ReadPosRankSum=2.426;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4880,534,0 chrXI 274112 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.6032;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.19;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3995,435,0 chrXI 274155 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.57;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4266,445,0 chrXI 274224 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.8592;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.594;QD=21.75;ReadPosRankSum=2.410;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4110,456,0 chrXI 274263 . C A 3142 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.95;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3175,342,0 chrXI 274276 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=4.260;HaplotypeScore=7.2180;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.342;QD=20.82;ReadPosRankSum=1.641;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3219,345,0 chrXI 274314 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.85;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3158,330,0 chrXI 274403 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=22.7802;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.44;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2977,318,0 chrXI 274476 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5334;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.25;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3510,364,0 chrXI 274746 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.275;QD=24.38;ReadPosRankSum=1.690;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4023,432,0 chrXI 274968 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.640;QD=22.40;ReadPosRankSum=1.715;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4547,495,0 chrXI 275016 . A G 5104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=228;Dels=0.00;FS=5.264;HaplotypeScore=14.8650;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.721;QD=22.39;ReadPosRankSum=2.916;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:5104,564,0 chrXI 275068 . G A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.06;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4474,477,0 chrXI 275312 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3108,327,0 chrXI 275360 . A C 2752 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2785,306,0 chrXI 278119 . C A 2401 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2434,264,0 chrXI 285242 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=114;Dels=0.00;FS=6.218;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.604;QD=23.60;ReadPosRankSum=2.406;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2723,297,0 chrXI 285782 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.95;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3473,372,0 chrXI 286581 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2422,252,0 chrXI 287276 . C G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.61;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3414,363,0 chrXI 289859 . G C 3777.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3777,408,0 chrXI 292055 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.80;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2933,309,0 chrXI 295126 . T G 4278.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.63;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4278,468,0 chrXI 297280 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.5384;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.77;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3916,412,0 chrXI 297401 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.03;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3982,420,0 chrXI 297476 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.71;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4077,424,0 chrXI 297512 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8152;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.27;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3786,405,0 chrXI 297561 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.62;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3755,408,0 chrXI 299859 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2227,243,0 chrXI 301521 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=17.2754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.951;QD=23.05;ReadPosRankSum=1.659;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3296,354,0 chrXI 302097 . T C 2289 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=26.01;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2322,252,0 chrXI 302470 . G T 2135 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.54;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2168,228,0 chrXI 302490 . T A 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.363;QD=23.12;ReadPosRankSum=1.692;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2021,219,0 chrXI 306453 . T G 3098 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3131,333,0 chrXI 308425 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=176;Dels=0.00;FS=10.793;HaplotypeScore=14.9653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.684;QD=22.05;ReadPosRankSum=2.925;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3881,429,0 chrXI 308754 . T G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.37;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3762,405,0 chrXI 309009 . C T 5166.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=22.6674;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.32;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5166,538,0 chrXI 309090 . T A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.3215;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.49;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4868,514,0 chrXI 309188 . T C 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=4.288;HaplotypeScore=16.0798;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.255;QD=21.73;ReadPosRankSum=1.698;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4454,489,0 chrXI 309294 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3404,357,0 chrXI 309632 . G A 893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=58;Dels=0.00;FS=10.328;HaplotypeScore=4.8606;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.076;QD=15.40;ReadPosRankSum=2.681;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:3,51:58:99:926,102,0 chrXI 309751 . T G 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.498;QD=22.51;ReadPosRankSum=1.685;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1699,186,0 chrXI 310373 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.41;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3745,402,0 chrXI 310423 . T A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=23.78;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3639,379,0 chrXI 310507 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.64;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2820,315,0 chrXI 310580 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=13.53;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2036,228,0 chrXI 310692 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=23.32;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3358,351,0 chrXI 310702 . C A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=24.24;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3491,361,0 chrXI 310798 . C A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6594;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.11;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3737,396,0 chrXI 310861 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=174;Dels=0.00;FS=6.563;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.092;QD=22.80;ReadPosRankSum=2.421;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3967,435,0 chrXI 311030 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=166;Dels=0.00;FS=3.006;HaplotypeScore=8.4100;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=0.377;QD=24.08;ReadPosRankSum=2.420;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3997,426,0 chrXI 311077 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=23.99;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4487,480,0 chrXI 311174 . T G 1011.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.545;DP=177;Dels=0.00;FS=27.864;HaplotypeScore=12.0764;MLEAC=1;MLEAF=0.500;MQ=34.36;MQ0=0;MQRankSum=-1.363;QD=5.71;ReadPosRankSum=-9.873;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:94,80:177:99:1041,0,182 chrXI 311278 . T C 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=0.795;QD=14.43;ReadPosRankSum=2.917;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1245,144,0 chrXI 311288 . A G 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=10.062;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;MQRankSum=-0.708;QD=12.28;ReadPosRankSum=1.683;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:905,108,0 chrXI 311294 . A C 671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=13.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=-0.472;QD=10.17;ReadPosRankSum=1.680;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:84:704,84,0 chrXI 311302 . C G 584 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=8.72;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:78:617,78,0 chrXI 311306 . A G 513 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=7.23;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:66:546,66,0 chrXI 311331 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=-2.078;QD=10.32;ReadPosRankSum=2.403;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1127,129,0 chrXI 311338 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=12.10;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1412,153,0 chrXI 311410 . A T 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=4.133;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=1.423;QD=20.76;ReadPosRankSum=1.715;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4194,445,0 chrXI 311431 . A T 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.459;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=1.181;QD=21.65;ReadPosRankSum=1.698;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4352,456,0 chrXI 311462 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=4.961;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=0.115;QD=17.82;ReadPosRankSum=1.716;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:3761,426,0 chrXI 311476 . C G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=17.58;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3727,437,0 chrXI 311502 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=4.639;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=-0.191;QD=19.80;ReadPosRankSum=1.717;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4494,489,0 chrXI 311526 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=16.3959;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;MQRankSum=-1.376;QD=18.75;ReadPosRankSum=1.705;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,252:255:99:4780,534,0 chrXI 311590 . C T 5257.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.18;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5257,553,0 chrXI 311668 . A G 6285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=22.1917;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.501;QD=21.82;ReadPosRankSum=1.720;SB=-3.725e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6285,682,0 chrXI 311735 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.77;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4776,522,0 chrXI 311744 . T G 4204.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.02;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4204,459,0 chrXI 311803 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.11;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3631,387,0 chrXI 311820 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.904;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-1.105;QD=21.10;ReadPosRankSum=1.715;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4198,450,0 chrXI 311850 . T A 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=3.713;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.760;QD=21.20;ReadPosRankSum=1.701;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4686,501,0 chrXI 311897 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=181;Dels=0.00;FS=2.970;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-2.013;QD=19.48;ReadPosRankSum=2.395;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3525,390,0 chrXI 311898 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=179;Dels=0.00;FS=8.822;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.313;QD=20.18;ReadPosRankSum=3.401;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3613,390,0 chrXI 311975 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.7148;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.92;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3288,360,0 chrXI 312014 . G C 3109 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.73;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3142,342,0 chrXI 312016 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.37;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3238,345,0 chrXI 312273 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.83;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2933,303,0 chrXI 312289 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.68;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3090,327,0 chrXI 312353 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.414;QD=22.39;ReadPosRankSum=1.712;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3918,420,0 chrXI 312511 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=164;Dels=0.00;FS=2.972;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.172;QD=25.32;ReadPosRankSum=2.420;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4152,447,0 chrXI 312545 . T G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=190;Dels=0.00;FS=7.177;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.176;QD=24.33;ReadPosRankSum=2.424;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4622,501,0 chrXI 312553 . T C 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.709;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.132;QD=23.38;ReadPosRankSum=1.663;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4746,537,0 chrXI 312734 . A C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7801;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.259;QD=23.16;ReadPosRankSum=1.711;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3728,408,0 chrXI 313024 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.58;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2364,267,0 chrXI 313063 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.83;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2704,279,0 chrXI 313073 . A C 2411 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.53;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2444,258,0 chrXI 313195 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=25.41;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2803,300,0 chrXI 313226 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=23.48;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2827,318,0 chrXI 313299 . T C 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-0.711;QD=21.97;ReadPosRankSum=1.696;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2120,249,0 chrXI 313318 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=23.58;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2037,222,0 chrXI 313345 . G T 1706 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=18.96;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1739,195,0 chrXI 313349 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=7.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;MQRankSum=-0.281;QD=17.73;ReadPosRankSum=2.396;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1664,189,0 chrXI 313365 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=16.72;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1337,144,0 chrXI 313367 . G A 1308 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=16.56;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1341,141,0 chrXI 313486 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=21.24;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2115,231,0 chrXI 313488 . T G 1847 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=20.08;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1880,219,0 chrXI 313507 . T C 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=7.056;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;MQRankSum=-1.470;QD=20.21;ReadPosRankSum=1.522;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1367,159,0 chrXI 313513 . T G 1198 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;QD=19.64;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1231,147,0 chrXI 313523 . T A 1080 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=21.60;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1113,126,0 chrXI 313544 . A C 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=-1.733;QD=20.15;ReadPosRankSum=1.628;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:81:698,81,0 chrXI 313602 . G A 919 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=19.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:952,102,0 chrXI 313695 . G C 50.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=5;QD=5.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:9:83,9,0 chrXI 313738 . A G 392 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=5;QD=10.59;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:51:425,51,0 chrXI 313757 . C T 628 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=0;QD=12.56;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:661,75,0 chrXI 313761 . C T 478.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.200;DP=54;Dels=0.00;FS=16.108;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=0;MQRankSum=-1.546;QD=8.85;ReadPosRankSum=4.746;SB=-1.659e+02 GT:AD:DP:GQ:PL 0/1:11,43:54:31:508,0,31 chrXI 313788 . A G 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;DP=56;Dels=0.00;FS=21.418;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=0;MQRankSum=1.941;QD=2.73;ReadPosRankSum=0.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,13:56:99:183,0,431 chrXI 313824 . G A 191.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=35;Dels=0.00;FS=7.396;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=1.017;QD=5.46;ReadPosRankSum=1.883;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:20,15:35:99:221,0,183 chrXI 313827 . C T 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=30;Dels=0.00;FS=5.781;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=-0.285;QD=3.93;ReadPosRankSum=-2.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,16:30:99:148,0,224 chrXI 313905 . G A 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;QD=7.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:78,9,0 chrXI 313908 . C T 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;QD=7.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:74,9,0 chrXI 313909 . A C 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;QD=5.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:67,9,0 chrXI 313924 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=0.68;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:55,6,0 chrXI 313985 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=23.03;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1691,174,0 chrXI 313997 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.4216;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;MQRankSum=0.000;QD=22.13;ReadPosRankSum=1.691;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1892,204,0 chrXI 314119 . G C 1512 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=23.26;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1545,171,0 chrXI 314126 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=21.00;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1398,156,0 chrXI 314131 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=22.21;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1388,156,0 chrXI 314163 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=21.07;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1192,132,0 chrXI 314524 . A C 37.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=5.42;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:70,9,0 chrXI 314694 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.186;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.375;QD=24.10;ReadPosRankSum=1.696;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2371,249,0 chrXI 314713 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=22.02;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2191,234,0 chrXI 314752 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.939;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.339;QD=21.32;ReadPosRankSum=2.400;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2144,240,0 chrXI 314787 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.93;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2147,231,0 chrXI 314820 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=118;Dels=0.00;FS=3.001;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.774;QD=21.57;ReadPosRankSum=2.407;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2578,279,0 chrXI 314862 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=25.51;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3145,330,0 chrXI 314906 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.527;DP=116;Dels=0.00;FS=3.617;HaplotypeScore=10.5486;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.401;QD=23.91;ReadPosRankSum=1.702;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2806,281,0 chrXI 315068 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=3.9063;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.29;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3723,399,0 chrXI 315069 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=194;Dels=0.00;FS=18.639;HaplotypeScore=4.6950;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.457;QD=18.76;ReadPosRankSum=3.378;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:4,189:194:99:3639,399,0 chrXI 315107 . G C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.85;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3791,411,0 chrXI 315617 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=130.0702;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.644;QD=23.20;ReadPosRankSum=1.712;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3991,429,0 chrXI 315654 . G C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=24.29;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4081,432,0 chrXI 315726 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.13;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3793,408,0 chrXI 315777 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=138;Dels=0.00;FS=5.729;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.511;QD=20.54;ReadPosRankSum=2.949;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2868,315,0 chrXI 315805 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.60;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2647,270,0 chrXI 315840 . G A 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=16.82;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1665,174,0 chrXI 315844 . T C 1388 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=15.60;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1421,162,0 chrXI 315847 . A G 1398 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=15.53;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1431,156,0 chrXI 315867 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9523;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=16.52;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1487,162,0 chrXI 315885 . A G 1367 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.19;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1400,153,0 chrXI 315893 . G T 1283 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.92;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1316,147,0 chrXI 315895 . C T 1380 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=15.86;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1413,147,0 chrXI 315903 . C T 1268 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;MQRankSum=-1.232;QD=14.09;ReadPosRankSum=1.309;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1301,147,0 chrXI 315904 . T A 1288 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;MQRankSum=1.167;QD=14.00;ReadPosRankSum=1.280;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1321,147,0 chrXI 315915 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;MQRankSum=-0.774;QD=14.44;ReadPosRankSum=1.695;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1390,150,0 chrXI 316100 . A T 1775 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=24.65;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1808,183,0 chrXI 316142 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=22.08;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1888,204,0 chrXI 316198 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=24.56;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1875,198,0 chrXI 316238 . A T 1522 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=98.2282;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=25.37;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1555,159,0 chrXI 316252 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=20.47;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1220,138,0 chrXI 316332 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=0.404;QD=16.80;ReadPosRankSum=1.675;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1041,114,0 chrXI 316346 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.79;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1141,123,0 chrXI 316362 . C A 1205 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.54;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1238,132,0 chrXI 316511 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.71;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2437,255,0 chrXI 316707 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=3.236;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.789;QD=22.04;ReadPosRankSum=1.666;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3526,393,0 chrXI 316845 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5489;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.324;QD=23.05;ReadPosRankSum=1.710;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3596,381,0 chrXI 317019 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=152;Dels=0.00;FS=6.050;HaplotypeScore=14.1099;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.887;QD=20.80;ReadPosRankSum=2.782;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3194,354,0 chrXI 317059 . G A 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=126.2027;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-1.630;QD=19.68;ReadPosRankSum=1.503;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2729,288,0 chrXI 317128 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.01;FS=0.000;HaplotypeScore=31.0101;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.12;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4064,444,0 chrXI 317287 . C A 6266.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.8355;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=26.89;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:6266,646,0 chrXI 317375 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=184;Dels=0.00;FS=2.992;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.007;QD=22.76;ReadPosRankSum=2.396;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4187,459,0 chrXI 317506 . A T 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.346;QD=25.55;ReadPosRankSum=1.712;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4471,475,0 chrXI 317549 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8334;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.42;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4093,424,0 chrXI 317644 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.79;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3868,406,0 chrXI 317671 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.24;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4442,460,0 chrXI 317712 . C G 4187.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.34;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4187,444,0 chrXI 319056 . G C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.95;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3281,357,0 chrXI 321711 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1889;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.81;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3325,360,0 chrXI 323019 . A T 1661 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1694,183,0 chrXI 326660 . G A 7196.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=17.1892;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.39;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:0,293:295:99:7196,786,0 chrXI 329802 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.40;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1863,198,0 chrXI 330799 . C A 1784 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.13;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1817,198,0 chrXI 331388 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2528,291,0 chrXI 332342 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.61;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1851,192,0 chrXI 332908 . T C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.270;QD=23.20;ReadPosRankSum=1.637;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2585,288,0 chrXI 333310 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2914,309,0 chrXI 333357 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.326;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.641;QD=23.25;ReadPosRankSum=1.671;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2683,288,0 chrXI 335215 . T A 739 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:87:772,87,0 chrXI 335429 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.66;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2967,309,0 chrXI 336495 . C G 2432 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2465,267,0 chrXI 337590 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=253.3788;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=15.71;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,277:285:99:4477,483,0 chrXI 337602 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=284;Dels=0.00;FS=5.841;HaplotypeScore=15.6300;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=1.720;QD=14.13;ReadPosRankSum=1.500;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:4014,438,0 chrXI 337772 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.010;QD=19.80;ReadPosRankSum=1.696;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:2,191:198:99:3921,423,0 chrXI 338730 . A T 1762 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.49;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1795,189,0 chrXI 338893 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2195,231,0 chrXI 339239 . T G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.58;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3477,393,0 chrXI 339536 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.51;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1879,201,0 chrXI 340231 . G C 5622.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.1776;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.46;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,258:262:99:5622,604,0 chrXI 340285 . G C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4412,504,0 chrXI 340583 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.99;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3076,345,0 chrXI 340618 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.45;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3199,333,0 chrXI 340770 . T A 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=1.377;QD=17.66;ReadPosRankSum=1.523;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2983,330,0 chrXI 340783 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.41;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3576,373,0 chrXI 340811 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.65;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3234,345,0 chrXI 340850 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=17.91;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2540,267,0 chrXI 341198 . C G 1901 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.47;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1934,222,0 chrXI 341413 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.707;DP=152;Dels=0.00;FS=3.965;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.251;QD=24.26;ReadPosRankSum=1.595;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3687,372,0 chrXI 341753 . A T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.9609;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.09;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4825,502,0 chrXI 341771 . G A 4711.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.1337;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.75;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4711,510,0 chrXI 344249 . C A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.35;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4179,439,0 chrXI 350701 . T G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=2.931;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.186;QD=25.16;ReadPosRankSum=2.401;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3825,408,0 chrXI 351114 . G C 1759 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1792,195,0 chrXI 351593 . C A 5929.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.2996;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.48;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:5929,645,0 chrXI 351752 . A G 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.456;DP=255;Dels=0.00;FS=18.392;HaplotypeScore=5.3131;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.559;QD=20.54;ReadPosRankSum=4.061;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:7,248:255:99:5238,585,0 chrXI 351755 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=252;Dels=0.00;FS=6.107;HaplotypeScore=5.1151;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.482;QD=20.79;ReadPosRankSum=2.381;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5240,582,0 chrXI 351788 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=249;Dels=0.00;FS=6.891;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.571;QD=20.72;ReadPosRankSum=2.430;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:2,245:249:99:5160,561,0 chrXI 351869 . A G 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.197;QD=22.88;ReadPosRankSum=1.704;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:5696,616,0 chrXI 351893 . C A 5254.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.80;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5254,585,0 chrXI 352346 . T A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.50;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4630,487,0 chrXI 352550 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=154;Dels=0.00;FS=5.590;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=23.14;ReadPosRankSum=2.915;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3563,384,0 chrXI 353056 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1832;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.42;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3583,396,0 chrXI 353091 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.94;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4229,436,0 chrXI 353277 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=7.795;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.740;QD=21.71;ReadPosRankSum=2.406;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3713,402,0 chrXI 353409 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.4254;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.687;QD=21.93;ReadPosRankSum=1.231;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3356,346,0 chrXI 353417 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1858;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.710;QD=21.86;ReadPosRankSum=1.357;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3454,372,0 chrXI 353489 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.01;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2863,309,0 chrXI 353525 . A G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=109;Dels=0.00;FS=9.257;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.137;QD=21.58;ReadPosRankSum=3.328;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:2385,270,0 chrXI 353646 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.73;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3560,375,0 chrXI 353672 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=7.4762;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.01;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2718,309,0 chrXI 353705 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.73;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2904,306,0 chrXI 353786 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2700,300,0 chrXI 354092 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.48;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2968,333,0 chrXI 354272 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.47;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3352,360,0 chrXI 354293 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9870;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.65;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3510,384,0 chrXI 354596 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.92;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3987,426,0 chrXI 354752 . C T 5545.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.1411;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.44;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5545,577,0 chrXI 354797 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=217;Dels=0.00;FS=5.935;HaplotypeScore=13.1003;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.366;QD=23.66;ReadPosRankSum=2.968;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:5134,547,0 chrXI 354822 . C T 5364.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.9020;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.73;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5364,565,0 chrXI 355074 . C A 1773 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=16.42;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1806,192,0 chrXI 355082 . C A 1580 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=15.49;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1613,171,0 chrXI 355096 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;QD=13.21;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1446,153,0 chrXI 355103 . G C 1367 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=12.54;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1400,150,0 chrXI 355110 . G A 1240 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.81;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1273,132,0 chrXI 355113 . A C 1128 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.327;QD=10.64;ReadPosRankSum=1.699;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1161,132,0 chrXI 355168 . A T 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;MQRankSum=1.046;QD=14.51;ReadPosRankSum=1.701;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1644,171,0 chrXI 355173 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=66.6891;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=13.60;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1556,162,0 chrXI 355187 . A G 47.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328;DP=102;Dels=0.00;FS=3.378;HaplotypeScore=5.4893;MLEAC=1;MLEAF=0.500;MQ=35.61;MQ0=0;MQRankSum=0.490;QD=0.46;ReadPosRankSum=-5.518;SB=-5.934e+01 GT:AD:DP:GQ:PL 0/1:81,21:102:8:77,0,8 chrXI 355188 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=103;Dels=0.00;FS=3.409;HaplotypeScore=6.2780;MLEAC=1;MLEAF=0.500;MQ=36.30;MQ0=0;MQRankSum=1.047;QD=0.35;ReadPosRankSum=5.933;SB=-9.200e+02 GT:AD:DP:GQ:PL 0/1:21,80:103:66:66,0,70 chrXI 355225 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=16.89;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1638,183,0 chrXI 355235 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.22;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1724,180,0 chrXI 356199 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.04;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3480,372,0 chrXI 356412 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=142;Dels=0.00;FS=5.107;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.432;QD=19.86;ReadPosRankSum=3.308;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:4,136:142:99:2853,312,0 chrXI 357004 . A G 9020.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.778;DP=410;Dels=0.00;FS=15.429;HaplotypeScore=26.2919;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.965;QD=22.00;ReadPosRankSum=3.706;SB=-5.154e+03 GT:AD:DP:GQ:PL 1/1:5,404:410:99:9020,996,0 chrXI 357158 . C T 9330.01 filter AC=2;AF=1.00;AN=2;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=26.1018;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.33;SB=-4.931e+03 GT:AD:DP:GQ:PL 1/1:0,396:400:99:9330,1012,0 chrXI 357992 . A G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.496;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.406;QD=22.09;ReadPosRankSum=1.691;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1933,210,0 chrXI 359142 . T C 2853 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2886,324,0 chrXI 361878 . A C 2605 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2638,282,0 chrXI 362171 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=3.330;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.353;QD=24.61;ReadPosRankSum=1.713;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4528,481,0 chrXI 362232 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.927;QD=21.09;ReadPosRankSum=1.715;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4176,462,0 chrXI 362247 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.23;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3863,414,0 chrXI 364924 . C T 4975.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4975,517,0 chrXI 365245 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.0025;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.52;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3552,381,0 chrXI 365364 . A T 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=3.721;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.275;QD=23.73;ReadPosRankSum=1.699;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2548,270,0 chrXI 372197 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9163;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.94;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3716,385,0 chrXI 372830 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.8154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4100,432,0 chrXI 372973 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.82;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3819,438,0 chrXI 373181 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.20;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4526,486,0 chrXI 373211 . A G 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.017;QD=23.98;ReadPosRankSum=1.694;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4413,486,0 chrXI 373448 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.84;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3418,357,0 chrXI 373454 . A G 3097 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.43;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3130,345,0 chrXI 373559 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3569,384,0 chrXI 373638 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.287;QD=23.56;ReadPosRankSum=1.709;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3511,381,0 chrXI 374006 . A C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.2541;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.532;QD=20.74;ReadPosRankSum=1.713;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3734,414,0 chrXI 374056 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3824;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.95;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4192,450,0 chrXI 374090 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.9622;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.325;QD=21.18;ReadPosRankSum=1.677;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3982,450,0 chrXI 374207 . C A 2717 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.64;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2750,291,0 chrXI 374257 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.481;QD=23.49;ReadPosRankSum=1.708;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3382,372,0 chrXI 374280 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.615;QD=21.27;ReadPosRankSum=2.415;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3054,333,0 chrXI 374295 . G C 2562 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.92;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2595,288,0 chrXI 374363 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.58;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2300,240,0 chrXI 374399 . A G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=125;Dels=0.00;FS=6.413;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.836;QD=18.60;ReadPosRankSum=2.371;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2358,267,0 chrXI 374745 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.310;QD=25.15;ReadPosRankSum=1.709;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3873,417,0 chrXI 374835 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.369;QD=23.85;ReadPosRankSum=1.710;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3721,405,0 chrXI 375750 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.853;QD=23.39;ReadPosRankSum=1.679;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3097,342,0 chrXI 375794 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=114;Dels=0.00;FS=5.291;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.478;QD=23.10;ReadPosRankSum=2.939;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2666,291,0 chrXI 375918 . C A 3132 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3165,339,0 chrXI 376508 . T C 4156.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4156,450,0 chrXI 376721 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.117;QD=22.52;ReadPosRankSum=1.687;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3445,387,0 chrXI 377373 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.478;QD=23.95;ReadPosRankSum=1.282;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4239,438,0 chrXI 377618 . T C 2463 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.46;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2496,270,0 chrXI 377781 . C A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=27.40;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3562,369,0 chrXI 377831 . C A 2702 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2735,303,0 chrXI 377954 . A C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.2957;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.168;QD=22.60;ReadPosRankSum=1.713;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4090,462,0 chrXI 377975 . C G 4334.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.11;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4334,495,0 chrXI 378422 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.435;QD=23.35;ReadPosRankSum=1.699;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2508,270,0 chrXI 378458 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=108;Dels=0.00;FS=3.037;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.103;QD=23.62;ReadPosRankSum=2.404;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2584,276,0 chrXI 378519 . T G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.373;QD=23.27;ReadPosRankSum=1.679;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3104,333,0 chrXI 378531 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.05;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2937,318,0 chrXI 378602 . T G 2891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.50;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2924,315,0 chrXI 378653 . T C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.516;QD=23.79;ReadPosRankSum=1.653;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3149,345,0 chrXI 378664 . A T 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.295;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.412;QD=23.33;ReadPosRankSum=1.705;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2972,312,0 chrXI 378856 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=23.49;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2946,318,0 chrXI 378899 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=22.90;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2117,228,0 chrXI 378901 . T G 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.840;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.414;QD=21.78;ReadPosRankSum=1.657;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2037,228,0 chrXI 378934 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=0.897;QD=21.53;ReadPosRankSum=1.649;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1820,198,0 chrXI 378957 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=17.44;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1376,156,0 chrXI 378962 . T C 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=89;Dels=0.02;FS=9.653;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;MQRankSum=-0.803;QD=15.72;ReadPosRankSum=2.850;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1432,165,0 chrXI 378999 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=13.40;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1413,153,0 chrXI 379000 . T C 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-1.232;QD=13.37;ReadPosRankSum=1.699;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1424,156,0 chrXI 379146 . T G 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;MQRankSum=-1.710;QD=14.60;ReadPosRankSum=2.410;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1829,195,0 chrXI 379149 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=14.00;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:1839,198,0 chrXI 379215 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=9.8149;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=20.06;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3222,351,0 chrXI 379283 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=21.33;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3190,333,0 chrXI 379287 . C G 2861 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=18.70;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2894,327,0 chrXI 379301 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=161;Dels=0.00;FS=10.404;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=0.306;QD=18.22;ReadPosRankSum=2.906;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:2967,333,0 chrXI 379423 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.676;QD=24.12;ReadPosRankSum=1.690;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3956,420,0 chrXI 379434 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=22.57;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3633,399,0 chrXI 379453 . T G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=0.942;QD=24.17;ReadPosRankSum=1.686;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3601,387,0 chrXI 379628 . T A 1390 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=20.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1423,150,0 chrXI 379650 . C T 1185 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=20.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1218,129,0 chrXI 379846 . G C 305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;DP=25;Dels=0.04;FS=6.812;HaplotypeScore=9.5123;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;MQRankSum=-1.734;QD=12.20;ReadPosRankSum=1.589;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:45:338,45,0 chrXI 379877 . G A 528 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=17.03;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:561,60,0 chrXI 379891 . A T 441 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=18.37;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:51:474,51,0 chrXI 379892 . C T 429 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=17.87;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:51:462,51,0 chrXI 379901 . T C 494 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=17.03;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:527,63,0 chrXI 380602 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3047,318,0 chrXI 380707 . A C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4029,444,0 chrXI 381058 . G A 9080.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=23.6413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:0,384:385:99:9080,976,0 chrXI 381581 . T A 5534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=16.1645;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;MQRankSum=-1.685;QD=18.57;ReadPosRankSum=1.126;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:1,296:297:99:5534,583,0 chrXI 381673 . C T 828.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;DP=382;Dels=0.01;FS=43.271;HaplotypeScore=41.7824;MLEAC=1;MLEAF=0.500;MQ=55.28;MQ0=0;MQRankSum=3.822;QD=2.17;ReadPosRankSum=-10.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:301,79:380:99:858,0,1291 chrXI 381726 . T C 8081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=359;Dels=0.00;FS=6.045;HaplotypeScore=25.5410;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.306;QD=22.51;ReadPosRankSum=2.902;SB=-4.477e+03 GT:AD:DP:GQ:PL 1/1:3,354:359:99:8081,894,0 chrXI 382202 . T A 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.951;DP=283;Dels=0.01;FS=2.252;HaplotypeScore=26.4358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.249;QD=17.48;ReadPosRankSum=1.546;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:4,277:281:99:4946,464,0 chrXI 382261 . A G 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=233;Dels=0.00;FS=2.957;HaplotypeScore=22.9036;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.212;QD=23.50;ReadPosRankSum=2.206;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5475,591,0 chrXI 382691 . A G 1197 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:68:99:1230,138,0 chrXI 383052 . G A 8024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=20.7590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.026;QD=23.53;ReadPosRankSum=-0.853;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:1,338:341:99:8024,868,0 chrXI 383133 . A G 8597.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=385;Dels=0.00;FS=5.920;HaplotypeScore=28.3141;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.065;QD=22.33;ReadPosRankSum=2.966;SB=-4.204e+03 GT:AD:DP:GQ:PL 1/1:3,381:385:99:8597,972,0 chrXI 383253 . T C 7166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=321;Dels=0.00;FS=5.999;HaplotypeScore=23.5256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.653;QD=22.32;ReadPosRankSum=2.953;SB=-3.977e+03 GT:AD:DP:GQ:PL 1/1:3,315:321:99:7166,789,0 chrXI 383538 . A G 6982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=304;Dels=0.00;FS=6.027;HaplotypeScore=21.5303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.179;QD=22.97;ReadPosRankSum=2.924;SB=-3.966e+03 GT:AD:DP:GQ:PL 1/1:3,299:304:99:6982,760,0 chrXI 383706 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=231;Dels=0.00;FS=8.849;HaplotypeScore=16.3517;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.860;QD=22.00;ReadPosRankSum=2.396;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:5082,561,0 chrXI 384068 . A G 6080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=312;Dels=0.00;FS=5.215;HaplotypeScore=23.0887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-2.111;QD=19.49;ReadPosRankSum=3.394;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:4,308:312:99:6080,684,0 chrXI 384196 . C T 5815.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=24.74;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5815,607,0 chrXI 384219 . G C 4365.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.99;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4365,486,0 chrXI 384228 . C T 4385.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.3523;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.72;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4385,454,0 chrXI 384453 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=204;Dels=0.00;FS=5.477;HaplotypeScore=13.6562;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.421;QD=23.38;ReadPosRankSum=2.797;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4770,513,0 chrXI 384558 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.20;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4665,484,0 chrXI 384573 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.274;QD=19.99;ReadPosRankSum=1.717;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4558,513,0 chrXI 384893 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=25.41;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1151,120,0 chrXI 385019 . A G 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=5.921;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.443;QD=20.23;ReadPosRankSum=1.571;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:99:923,99,0 chrXI 385037 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.06;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:929,96,0 chrXI 385341 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.90;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2748,294,0 chrXI 385346 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=22.62;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2793,297,0 chrXI 385392 . A T 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.006;DP=122;Dels=0.00;FS=2.951;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.010;QD=16.85;ReadPosRankSum=2.329;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2089,237,0 chrXI 385419 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=21.38;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2684,279,0 chrXI 385432 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.56;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2446,285,0 chrXI 385436 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=19.87;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2616,285,0 chrXI 385473 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.09;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2353,243,0 chrXI 385548 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.364;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.000;QD=18.27;ReadPosRankSum=1.701;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2079,234,0 chrXI 385609 . T G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-0.817;QD=10.35;ReadPosRankSum=2.264;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1265,147,0 chrXI 385688 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=23.21;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3273,339,0 chrXI 385697 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.24;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3028,315,0 chrXI 385892 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.54;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4344,468,0 chrXI 385928 . A C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.516;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.252;QD=24.95;ReadPosRankSum=1.672;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4316,477,0 chrXI 386039 . T A 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.303;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.414;QD=24.42;ReadPosRankSum=1.638;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4518,481,0 chrXI 386072 . C G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.98;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4293,471,0 chrXI 386153 . A C 2727 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2760,294,0 chrXI 386207 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.68;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3554,364,0 chrXI 386520 . A C 5481.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=19.0790;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.76;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5481,615,0 chrXI 386658 . A C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=244;Dels=0.00;FS=7.924;HaplotypeScore=11.7151;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.098;QD=21.34;ReadPosRankSum=3.417;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:4,237:244:99:5208,579,0 chrXI 386669 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=3.787;HaplotypeScore=7.1400;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.060;QD=21.40;ReadPosRankSum=1.702;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5008,564,0 chrXI 387042 . A G 3530.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;MQRankSum=-0.484;QD=17.92;ReadPosRankSum=1.714;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3530,402,0 chrXI 387050 . C T 3391.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=17.94;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3391,366,0 chrXI 387052 . A G 3168 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=189;Dels=0.00;FS=3.024;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-0.955;QD=16.76;ReadPosRankSum=2.424;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3201,360,0 chrXI 387069 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;MQRankSum=0.521;QD=14.58;ReadPosRankSum=1.713;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:2760,306,0 chrXI 387089 . C A 2278 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=13.09;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:2311,243,0 chrXI 387148 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.04;FS=0.000;HaplotypeScore=27.0528;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.84;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2869,300,0 chrXI 387173 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=33.3225;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=0.940;QD=17.12;ReadPosRankSum=1.664;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2653,309,0 chrXI 387224 . A T 188.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=125;Dels=0.00;FS=2.432;HaplotypeScore=81.8669;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-1.803;QD=1.50;ReadPosRankSum=3.163;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:4,121:125:24:221,24,0 chrXI 387632 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.74;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2062,213,0 chrXI 388001 . G A 5748.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.25;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5748,598,0 chrXI 388314 . A C 4336.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4336,480,0 chrXI 388522 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=17.9109;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.98;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4052,415,0 chrXI 388737 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.466;QD=24.74;ReadPosRankSum=1.694;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4528,486,0 chrXI 388947 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.03;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2221,231,0 chrXI 389051 . A T 1450 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=24.58;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1483,156,0 chrXI 389074 . A G 1035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;MQRankSum=-1.732;QD=22.02;ReadPosRankSum=1.511;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1068,117,0 chrXI 389081 . G A 847 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=18.41;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:93:880,93,0 chrXI 389086 . T A 755 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=19.87;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:788,84,0 chrXI 389093 . T A 577 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=19.23;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:610,66,0 chrXI 389135 . G A 276 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=11.50;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,20:24:33:309,33,0 chrXI 389148 . A G 367.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DP=67;Dels=0.00;FS=72.240;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=36.80;MQ0=0;MQRankSum=0.756;QD=5.48;ReadPosRankSum=3.250;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:12,54:67:92:397,0,92 chrXI 389150 . A T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=69;Dels=0.00;FS=60.973;HaplotypeScore=14.6575;MLEAC=1;MLEAF=0.500;MQ=37.24;MQ0=0;MQRankSum=-1.205;QD=0.93;ReadPosRankSum=-4.335;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,13:69:94:94,0,462 chrXI 389222 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.666;HaplotypeScore=7.5140;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.081;QD=23.74;ReadPosRankSum=1.603;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2597,285,0 chrXI 389298 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=25.31;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2817,288,0 chrXI 389361 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.66;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2647,282,0 chrXI 389434 . C G 2751 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6347;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.37;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2784,300,0 chrXI 389599 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=34.6673;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.92;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3946,420,0 chrXI 389917 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=179;Dels=0.00;FS=5.732;HaplotypeScore=10.0722;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.559;QD=22.16;ReadPosRankSum=2.938;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3967,432,0 chrXI 389926 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=2.995;HaplotypeScore=7.3676;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.451;QD=22.59;ReadPosRankSum=2.380;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4021,438,0 chrXI 389996 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.71;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3163,327,0 chrXI 390146 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.110;QD=21.78;ReadPosRankSum=1.614;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2603,282,0 chrXI 390188 . T G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=114;Dels=0.00;FS=8.456;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.272;QD=21.47;ReadPosRankSum=2.363;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2481,270,0 chrXI 390536 . C T 3637.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.45;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3637,378,0 chrXI 390539 . G A 3507.01 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=22.34;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3507,366,0 chrXI 390540 . C T 3565.01 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.14;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3565,370,0 chrXI 390664 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.58;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4348,451,0 chrXI 390693 . C G 4250.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.35;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4250,465,0 chrXI 390798 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.397;QD=22.25;ReadPosRankSum=1.687;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3471,381,0 chrXI 391146 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.15;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2110,216,0 chrXI 391161 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.71;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1857,198,0 chrXI 391712 . C T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.60;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5314,571,0 chrXI 391758 . T A 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.032;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=0.732;QD=23.80;ReadPosRankSum=1.698;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4783,505,0 chrXI 391848 . C T 5182.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.56;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5182,553,0 chrXI 391885 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=209;Dels=0.00;FS=6.082;HaplotypeScore=12.0789;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.762;QD=21.41;ReadPosRankSum=2.956;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:4474,483,0 chrXI 391941 . A G 4368.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=275;Dels=0.00;FS=4.307;HaplotypeScore=7.8345;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;MQRankSum=-1.442;QD=15.88;ReadPosRankSum=1.719;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:4368,477,0 chrXI 391949 . A C 3050 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=261;Dels=0.00;FS=4.495;HaplotypeScore=8.8474;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;MQRankSum=-1.465;QD=11.69;ReadPosRankSum=1.705;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:3083,368,0 chrXI 391951 . G T 2964 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.018;DP=260;Dels=0.00;FS=12.298;HaplotypeScore=6.7936;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=-3.621;QD=11.40;ReadPosRankSum=3.801;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:5,255:260:99:2997,313,0 chrXI 391952 . C T 2950 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=260;Dels=0.00;FS=12.130;HaplotypeScore=6.7936;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=-3.483;QD=11.35;ReadPosRankSum=3.795;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:5,255:260:99:2983,314,0 chrXI 391953 . A T 2963 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.685;DP=262;Dels=0.00;FS=12.251;HaplotypeScore=7.6258;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;MQRankSum=-3.426;QD=11.31;ReadPosRankSum=3.730;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:5,257:262:99:2996,312,0 chrXI 391971 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=11.0354;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=15.38;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:4600,498,0 chrXI 392106 . C T 6850.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.2491;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=24.64;SB=-3.603e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6850,730,0 chrXI 392226 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8885;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.328;QD=20.09;ReadPosRankSum=1.714;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3978,432,0 chrXI 392410 . A T 1138 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.06;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1171,126,0 chrXI 392521 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.190;QD=18.83;ReadPosRankSum=2.394;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1690,183,0 chrXI 392532 . G T 2067 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.87;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2100,216,0 chrXI 392631 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.02;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2915,333,0 chrXI 392660 . T A 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.425;QD=21.86;ReadPosRankSum=1.689;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3476,393,0 chrXI 392864 . C T 6866.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.72;SB=-3.540e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6866,715,0 chrXI 393129 . G A 4948.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.6631;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.29;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4948,534,0 chrXI 393144 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.67;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4400,477,0 chrXI 393245 . G A 5310.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.50;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5310,571,0 chrXI 393433 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.23;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3611,376,0 chrXI 393546 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=118.3911;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=0.16;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:6:51,6,0 chrXI 393585 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=14.52;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:1877,201,0 chrXI 393593 . A G 1879 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=14.80;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1912,213,0 chrXI 393616 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=2.874;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-1.319;QD=16.00;ReadPosRankSum=2.414;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2225,255,0 chrXI 393642 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=147;Dels=0.00;FS=7.647;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.896;QD=20.05;ReadPosRankSum=2.381;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,142:147:99:2980,324,0 chrXI 393718 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=23.88;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3917,417,0 chrXI 393822 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=211;Dels=0.00;FS=8.108;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.835;QD=24.29;ReadPosRankSum=3.385;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:5125,567,0 chrXI 393915 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.4002;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.54;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3877,417,0 chrXI 394047 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.0302;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.29;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4238,445,0 chrXI 394572 . A T 2652 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.72;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2685,303,0 chrXI 394878 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.243;QD=24.66;ReadPosRankSum=1.691;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4192,450,0 chrXI 394920 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=186;Dels=0.00;FS=3.031;HaplotypeScore=16.2121;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.856;QD=23.46;ReadPosRankSum=2.396;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4364,465,0 chrXI 395017 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.661;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.906;QD=19.69;ReadPosRankSum=1.709;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3006,342,0 chrXI 395025 . A C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=152;Dels=0.00;FS=8.367;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.927;QD=19.66;ReadPosRankSum=3.401;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3021,327,0 chrXI 395041 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.99;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3181,325,0 chrXI 395065 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=2.938;HaplotypeScore=8.1711;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.381;QD=18.33;ReadPosRankSum=2.403;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:2966,327,0 chrXI 395161 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.02;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3828,417,0 chrXI 395566 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=185;Dels=0.00;FS=5.688;HaplotypeScore=18.0062;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.310;QD=22.64;ReadPosRankSum=2.930;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4189,450,0 chrXI 395650 . T C 6295.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.23;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6295,705,0 chrXI 395770 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.04;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3414,360,0 chrXI 395794 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.31;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3388,366,0 chrXI 396036 . A G 3151 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0366;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.62;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3184,345,0 chrXI 396283 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.33;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3724,408,0 chrXI 396469 . G T 5483.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.15;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,222:227:99:5483,580,0 chrXI 396726 . C G 6660.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=16.5629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-3.418e+03 GT:AD:DP:GQ:PL 1/1:0,303:311:99:6660,718,0 chrXI 396781 . G A 6783.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=20.4328;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.92;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6783,733,0 chrXI 397159 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.15;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2531,261,0 chrXI 397458 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=27.19;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3752,385,0 chrXI 397509 . G A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.17;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4327,477,0 chrXI 397560 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.54;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4674,496,0 chrXI 397710 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-1.302;QD=22.86;ReadPosRankSum=1.709;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3497,375,0 chrXI 397717 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.39;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3027,327,0 chrXI 397723 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.011;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-1.426;QD=22.40;ReadPosRankSum=1.707;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3079,327,0 chrXI 397781 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.69;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3164,327,0 chrXI 397815 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.96;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3354,366,0 chrXI 397890 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=22.85;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2547,276,0 chrXI 397895 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=23.08;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2549,267,0 chrXI 397941 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.90;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2617,270,0 chrXI 397947 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.30;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2553,264,0 chrXI 397992 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.035;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.504;QD=21.81;ReadPosRankSum=2.412;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2890,315,0 chrXI 398874 . C G 2378 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.54;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2411,255,0 chrXI 398989 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2438,261,0 chrXI 399060 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.38;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3178,325,0 chrXI 399815 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=145;Dels=0.00;FS=9.185;HaplotypeScore=10.9289;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.630;QD=23.81;ReadPosRankSum=3.373;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:4,139:145:99:3453,366,0 chrXI 399858 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.6995;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.60;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3125,339,0 chrXI 399903 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0197;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.32;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3624,381,0 chrXI 399930 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=7.575;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.221;QD=21.11;ReadPosRankSum=2.400;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3264,366,0 chrXI 399948 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.35;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3553,384,0 chrXI 399987 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4898;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.49;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2901,303,0 chrXI 400068 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6989;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.93;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4227,445,0 chrXI 400152 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.8057;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.80;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3685,405,0 chrXI 400341 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.97;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4847,511,0 chrXI 400358 . C T 4977.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.1565;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.91;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4977,520,0 chrXI 400402 . T A 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.5680;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.229;QD=23.01;ReadPosRankSum=1.717;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5384,565,0 chrXI 400521 . G A 6360.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.8028;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.34;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6360,690,0 chrXI 400569 . T G 5902.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.24;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5902,654,0 chrXI 400712 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5008,526,0 chrXI 401736 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.23;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4580,478,0 chrXI 401769 . C G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5726;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.27;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3898,423,0 chrXI 401890 . C G 5457.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.27;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5457,588,0 chrXI 402484 . T C 5325.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.2223;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.77;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5325,568,0 chrXI 402723 . A G 6305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=3.044;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.879;QD=24.25;ReadPosRankSum=1.705;SB=-3.435e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:6305,696,0 chrXI 402768 . C T 5899.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.1216;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5899,637,0 chrXI 403407 . G T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.61;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5620,598,0 chrXI 403482 . A G 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.559;DP=225;Dels=0.00;FS=7.711;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.031;QD=23.57;ReadPosRankSum=3.818;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:5,219:225:99:5303,565,0 chrXI 403713 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5441,586,0 chrXI 403962 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.9590;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.20;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4451,474,0 chrXI 404302 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=181;Dels=0.00;FS=14.242;HaplotypeScore=8.2462;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.872;QD=21.67;ReadPosRankSum=2.950;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3923,429,0 chrXI 404344 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=162;Dels=0.00;FS=2.637;HaplotypeScore=15.8741;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.023;QD=21.38;ReadPosRankSum=2.359;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3463,372,0 chrXI 404440 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.9288;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.24;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3509,366,0 chrXI 404696 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.46;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2577,279,0 chrXI 404773 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2819,297,0 chrXI 404905 . C G 3176 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.21;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3209,363,0 chrXI 405007 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3570,367,0 chrXI 405114 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.55;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3781,391,0 chrXI 405331 . C A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.64;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3653,390,0 chrXI 405337 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=20.53;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3593,381,0 chrXI 405361 . A C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.884;QD=18.93;ReadPosRankSum=2.409;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3446,378,0 chrXI 405409 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.84;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2969,318,0 chrXI 405592 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6880;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.83;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3426,375,0 chrXI 405871 . C G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.47;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3731,405,0 chrXI 405960 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3807,411,0 chrXI 406060 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.53;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3255,342,0 chrXI 406069 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.76;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3058,318,0 chrXI 406357 . T C 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.128;QD=25.22;ReadPosRankSum=1.692;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2202,240,0 chrXI 406489 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.882;QD=21.43;ReadPosRankSum=1.634;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2305,258,0 chrXI 406558 . A G 2513 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2546,288,0 chrXI 406897 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3653,382,0 chrXI 407067 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.28;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4128,444,0 chrXI 407104 . T G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.8202;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.64;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3373,366,0 chrXI 407274 . A G 2905 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.18;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2938,315,0 chrXI 407314 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.20;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2764,306,0 chrXI 407572 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.672;QD=23.49;ReadPosRankSum=1.652;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4088,441,0 chrXI 408448 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1376;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.61;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4353,457,0 chrXI 408493 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.111;QD=23.89;ReadPosRankSum=1.688;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3751,420,0 chrXI 408636 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=3.028;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.638;QD=22.52;ReadPosRankSum=2.422;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4053,450,0 chrXI 408938 . C T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.43;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4685,490,0 chrXI 408960 . C G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.41;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4840,534,0 chrXI 409333 . A G 2356 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2389,264,0 chrXI 409377 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2162,231,0 chrXI 409808 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.22;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2278,240,0 chrXI 409950 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.30;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3618,384,0 chrXI 410208 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.55;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:4051,432,0 chrXI 410250 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.36;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3555,387,0 chrXI 410346 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=4.061;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.168;QD=24.34;ReadPosRankSum=1.681;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3335,357,0 chrXI 410388 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.06;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3261,342,0 chrXI 410472 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.83;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3670,399,0 chrXI 410677 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.88;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3317,366,0 chrXI 410730 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.12;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3738,408,0 chrXI 410781 . T G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6744;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.29;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3299,369,0 chrXI 410796 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.64;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3306,366,0 chrXI 410848 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.45;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3246,351,0 chrXI 410991 . A G 3098 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.66;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3131,336,0 chrXI 410995 . T C 2816 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.877;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.777;QD=19.56;ReadPosRankSum=2.398;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2849,318,0 chrXI 411001 . C A 2899 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.42;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2932,303,0 chrXI 411118 . G A 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=188;Dels=0.00;FS=3.057;HaplotypeScore=18.1639;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.640;QD=24.67;ReadPosRankSum=1.179;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4638,481,0 chrXI 411183 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.17;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4157,459,0 chrXI 411351 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.0006;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.981;QD=23.31;ReadPosRankSum=1.684;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3356,366,0 chrXI 411456 . T G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7430;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.921;QD=22.77;ReadPosRankSum=1.142;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3243,354,0 chrXI 411637 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.74;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3219,357,0 chrXI 411643 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.75;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3050,351,0 chrXI 411756 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.732;QD=24.07;ReadPosRankSum=1.637;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4429,483,0 chrXI 411997 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.634;QD=23.24;ReadPosRankSum=2.369;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3555,384,0 chrXI 412238 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.66;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3140,327,0 chrXI 412494 . C A 2745 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.87;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2778,288,0 chrXI 412504 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.641;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.265;QD=22.32;ReadPosRankSum=1.701;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2511,276,0 chrXI 412602 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.25;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3838,400,0 chrXI 412789 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.26;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3016,324,0 chrXI 413234 . A T 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=153;Dels=0.00;FS=2.972;HaplotypeScore=8.2511;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.185;QD=24.48;ReadPosRankSum=2.305;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3745,391,0 chrXI 413439 . G T 2513 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2546,267,0 chrXI 413669 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.94;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3125,319,0 chrXI 414169 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.92;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2690,306,0 chrXI 414179 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.067;QD=21.56;ReadPosRankSum=1.649;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2728,306,0 chrXI 414232 . G C 2422 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.35;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2455,273,0 chrXI 414336 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4213;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.60;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2798,309,0 chrXI 414688 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=2.989;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.113;QD=23.83;ReadPosRankSum=2.400;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2368,258,0 chrXI 415240 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.66;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2967,321,0 chrXI 415294 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.03;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2628,282,0 chrXI 415378 . A C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.737;QD=22.44;ReadPosRankSum=1.692;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2008,225,0 chrXI 415407 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=26.00;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2425,249,0 chrXI 415441 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=3.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.014;QD=23.46;ReadPosRankSum=2.396;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2168,237,0 chrXI 415456 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.81;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2246,246,0 chrXI 415517 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.63;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2160,231,0 chrXI 415531 . T C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.158;QD=19.93;ReadPosRankSum=2.401;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2066,225,0 chrXI 415542 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.23;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2283,249,0 chrXI 415669 . T G 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.768;DP=154;Dels=0.00;FS=101.355;HaplotypeScore=16.8416;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=0.443;QD=0.69;ReadPosRankSum=0.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,49:154:99:136,0,1506 chrXI 415738 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.0285;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.63;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3804,400,0 chrXI 415800 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.73;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3394,381,0 chrXI 415864 . C G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.68;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3646,390,0 chrXI 415894 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5550;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.56;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3519,375,0 chrXI 416349 . A T 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.457;QD=24.28;ReadPosRankSum=1.588;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3497,364,0 chrXI 416398 . A G 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9914;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.680;QD=21.86;ReadPosRankSum=1.706;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3006,320,0 chrXI 416471 . T A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.05;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3582,375,0 chrXI 416779 . G T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0522;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3997,424,0 chrXI 417173 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.81;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1323,135,0 chrXI 417398 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.643;QD=23.81;ReadPosRankSum=2.313;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2176,240,0 chrXI 417408 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=24.94;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2402,252,0 chrXI 417416 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.10;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2066,225,0 chrXI 417757 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3732,405,0 chrXI 418958 . C G 2619 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2652,288,0 chrXI 419090 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.659;QD=21.36;ReadPosRankSum=1.671;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2468,279,0 chrXI 419192 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.591;QD=24.13;ReadPosRankSum=1.697;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2446,264,0 chrXI 419400 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.82;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2543,264,0 chrXI 419413 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.260;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.099;QD=22.57;ReadPosRankSum=1.666;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2403,258,0 chrXI 420004 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=2.942;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.173;QD=22.90;ReadPosRankSum=2.367;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4077,459,0 chrXI 420060 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.72;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2827,306,0 chrXI 420104 . T C 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.072;QD=22.79;ReadPosRankSum=1.660;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2244,243,0 chrXI 420245 . C A 2214 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2247,237,0 chrXI 420643 . T G 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=123;Dels=0.00;FS=4.357;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.173;QD=21.00;ReadPosRankSum=1.703;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2616,294,0 chrXI 421082 . G C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.10;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3280,366,0 chrXI 421142 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3872,420,0 chrXI 421239 . G T 2879 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.33;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2912,318,0 chrXI 421550 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.41;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1717,186,0 chrXI 421696 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=3.041;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.061;QD=24.79;ReadPosRankSum=2.415;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3496,375,0 chrXI 421905 . T A 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=2.995;HaplotypeScore=9.3630;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.685;QD=24.87;ReadPosRankSum=2.400;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3706,393,0 chrXI 422051 . G T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5213;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.46;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3669,385,0 chrXI 422154 . A C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4029,427,0 chrXI 422960 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.304;QD=21.07;ReadPosRankSum=1.696;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2077,237,0 chrXI 423496 . A T 2723 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2756,297,0 chrXI 423977 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.827;HaplotypeScore=12.0581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.683;QD=22.41;ReadPosRankSum=1.658;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3215,354,0 chrXI 424151 . G A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4468,460,0 chrXI 424217 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.573;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.655;QD=23.01;ReadPosRankSum=1.662;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3451,369,0 chrXI 424283 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.483;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.367;QD=23.59;ReadPosRankSum=1.711;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3892,432,0 chrXI 424564 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.55;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3485,358,0 chrXI 424739 . G T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.83;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3250,342,0 chrXI 424829 . C T 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=12.5782;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.383;QD=22.35;ReadPosRankSum=1.203;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2983,309,0 chrXI 424954 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.17;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2957,309,0 chrXI 424958 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.64;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2894,300,0 chrXI 425450 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4040,418,0 chrXI 425593 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=232;Dels=0.00;FS=5.832;HaplotypeScore=15.5000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.017;QD=22.40;ReadPosRankSum=2.927;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:5196,582,0 chrXI 425985 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.790;QD=23.73;ReadPosRankSum=1.649;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3047,324,0 chrXI 426033 . A C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.664;QD=21.47;ReadPosRankSum=1.680;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2888,306,0 chrXI 426199 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2963,315,0 chrXI 427151 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=6.9113;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.61;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1867,201,0 chrXI 427291 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.13;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2994,318,0 chrXI 427367 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.337;QD=22.48;ReadPosRankSum=2.377;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3090,351,0 chrXI 427643 . A T 3081 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3114,333,0 chrXI 428291 . G C 3813.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.2198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3813,432,0 chrXI 428422 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1238;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.99;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4113,441,0 chrXI 428519 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3452,369,0 chrXI 429856 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3028,309,0 chrXI 429958 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3777,402,0 chrXI 430549 . C G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=165.1125;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.63;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3610,393,0 chrXI 430572 . T G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.87;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3360,354,0 chrXI 430641 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.00;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4000,453,0 chrXI 430806 . A T 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=4.744;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.711;QD=25.75;ReadPosRankSum=1.711;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4145,436,0 chrXI 430831 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=3.007;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.743;QD=23.94;ReadPosRankSum=2.337;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3663,405,0 chrXI 430859 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.100;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.318;QD=23.86;ReadPosRankSum=1.709;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3508,378,0 chrXI 430903 . G T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.85;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3245,354,0 chrXI 430973 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.250;QD=23.96;ReadPosRankSum=1.695;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4481,498,0 chrXI 431261 . C A 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=94.8256;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.292;QD=20.42;ReadPosRankSum=1.629;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2095,234,0 chrXI 431262 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=96.4030;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=0.567;QD=20.02;ReadPosRankSum=2.377;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2075,234,0 chrXI 431353 . T A 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.488;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;MQRankSum=-1.047;QD=16.01;ReadPosRankSum=1.552;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1570,165,0 chrXI 431381 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=102;Dels=0.00;FS=3.043;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=1.085;QD=18.16;ReadPosRankSum=2.401;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:1885,204,0 chrXI 431451 . A G 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.000;HaplotypeScore=6.3880;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-1.059;QD=21.24;ReadPosRankSum=1.700;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2327,264,0 chrXI 431473 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.48;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2245,249,0 chrXI 431506 . T A 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-0.346;QD=19.29;ReadPosRankSum=1.701;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2155,234,0 chrXI 431520 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=18.15;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2247,249,0 chrXI 431543 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=19.24;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2438,267,0 chrXI 431610 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=4.819;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.438;QD=19.75;ReadPosRankSum=1.713;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3595,405,0 chrXI 431617 . G C 3701.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.34;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3701,405,0 chrXI 431700 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.70;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3436,360,0 chrXI 432094 . A T 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=25.97;ReadPosRankSum=1.687;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4025,424,0 chrXI 432256 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1348,141,0 chrXI 432569 . C G 2103 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=27.67;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2136,228,0 chrXI 432748 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=22.52;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2465,273,0 chrXI 432897 . T G 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.796;QD=20.08;ReadPosRankSum=1.592;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1519,171,0 chrXI 433630 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.991;QD=23.56;ReadPosRankSum=1.692;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4100,447,0 chrXI 433721 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.594;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.145;QD=21.42;ReadPosRankSum=1.713;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3920,429,0 chrXI 433722 . T A 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.218;QD=21.90;ReadPosRankSum=1.694;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3985,423,0 chrXI 433798 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=8.363;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.098;QD=19.87;ReadPosRankSum=2.414;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2775,303,0 chrXI 433806 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8046;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.29;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2935,312,0 chrXI 434001 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.84;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4049,427,0 chrXI 434204 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3647,382,0 chrXI 434444 . G T 6252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=256;Dels=0.00;FS=4.823;HaplotypeScore=16.5314;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.319;QD=24.42;ReadPosRankSum=-1.053;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:6252,655,0 chrXI 434756 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=150;Dels=0.00;FS=2.479;HaplotypeScore=9.4319;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.510;QD=19.15;ReadPosRankSum=2.913;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2906,321,0 chrXI 434977 . A G 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.01;FS=4.652;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.930;QD=21.97;ReadPosRankSum=1.636;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2450,261,0 chrXI 434978 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.50;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2508,258,0 chrXI 435067 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.41;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3013,318,0 chrXI 435648 . A G 2973 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3006,324,0 chrXI 435970 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4122,438,0 chrXI 438253 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=197;Dels=0.00;FS=6.362;HaplotypeScore=13.7090;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.485;QD=21.40;ReadPosRankSum=2.424;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4216,480,0 chrXI 438455 . C G 3149 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.49;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3182,354,0 chrXI 439973 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.63;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1893,198,0 chrXI 440174 . A T 130.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:18:163,18,0 chrXI 441961 . T A 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=2.675;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.311;QD=23.09;ReadPosRankSum=2.394;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4110,438,0 chrXI 442302 . T G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.260;QD=23.27;ReadPosRankSum=1.709;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3584,396,0 chrXI 442829 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.6034;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.72;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2987,318,0 chrXI 442875 . T G 2969 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.95;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3002,324,0 chrXI 443215 . C G 2719 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2752,294,0 chrXI 443498 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3222,336,0 chrXI 443630 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5754;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.03;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3117,348,0 chrXI 443807 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.546;QD=23.96;ReadPosRankSum=1.590;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3498,375,0 chrXI 444125 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.478;HaplotypeScore=8.7240;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.507;QD=22.95;ReadPosRankSum=1.709;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3396,372,0 chrXI 444152 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.99;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3475,369,0 chrXI 444997 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2924;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.272;QD=23.11;ReadPosRankSum=1.705;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2991,330,0 chrXI 445026 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.634;QD=22.55;ReadPosRankSum=1.708;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3235,351,0 chrXI 445204 . C A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.37;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3378,366,0 chrXI 445342 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.601;QD=23.28;ReadPosRankSum=1.667;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3725,417,0 chrXI 445854 . T C 2740 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2773,297,0 chrXI 446566 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1997,213,0 chrXI 446892 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.36;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1957,207,0 chrXI 447048 . A G 2515 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.50;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2548,276,0 chrXI 447357 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3317,343,0 chrXI 447456 . A G 2575 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2608,276,0 chrXI 447546 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.564;QD=23.61;ReadPosRankSum=1.708;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3424,369,0 chrXI 447660 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.864;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=23.10;ReadPosRankSum=2.320;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2666,291,0 chrXI 449495 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1232;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3208,342,0 chrXI 452722 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=143;Dels=0.00;FS=7.611;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.072;QD=24.80;ReadPosRankSum=2.380;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3547,381,0 chrXI 453188 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.50;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3356,351,0 chrXI 453782 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3814,438,0 chrXI 457446 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3131,339,0 chrXI 457859 . T A 3017 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3050,321,0 chrXI 458781 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.57;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1999,216,0 chrXI 459646 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=4.771;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-0.079;QD=23.73;ReadPosRankSum=1.653;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3165,345,0 chrXI 461216 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3228,342,0 chrXI 463080 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.40;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3879,414,0 chrXI 463701 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=213;Dels=0.00;FS=5.999;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.524;QD=23.94;ReadPosRankSum=2.939;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:5099,576,0 chrXI 464111 . G T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.45;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3952,415,0 chrXI 467127 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=111;Dels=0.00;FS=3.882;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.850;QD=21.90;ReadPosRankSum=1.606;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2464,267,0 chrXI 467162 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.39;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2429,270,0 chrXI 467237 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.90;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2188,237,0 chrXI 467243 . T C 2189 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.72;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2222,240,0 chrXI 467309 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.36;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2515,276,0 chrXI 467328 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.199;QD=22.54;ReadPosRankSum=1.640;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2580,285,0 chrXI 467504 . G A 5207.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.8406;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.56;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5207,579,0 chrXI 467546 . A G 4588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=207;Dels=0.00;FS=10.065;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.221;QD=22.16;ReadPosRankSum=2.402;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4588,525,0 chrXI 467564 . T G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.871;QD=22.51;ReadPosRankSum=1.676;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4210,477,0 chrXI 467627 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.60;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3841,408,0 chrXI 467651 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=203;Dels=0.00;FS=12.168;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.408;QD=18.22;ReadPosRankSum=2.935;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:3699,396,0 chrXI 467666 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=233;Dels=0.00;FS=2.583;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.788;QD=17.66;ReadPosRankSum=2.407;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,228:233:99:4115,462,0 chrXI 467744 . A G 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.168;QD=21.80;ReadPosRankSum=1.716;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4708,510,0 chrXI 467777 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=7.050;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.303;QD=20.88;ReadPosRankSum=2.405;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3487,393,0 chrXI 467786 . T A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5912;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.25;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3549,378,0 chrXI 468208 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.642;QD=23.59;ReadPosRankSum=1.684;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3374,381,0 chrXI 468315 . A T 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.757;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.222;QD=22.83;ReadPosRankSum=1.696;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2202,237,0 chrXI 468581 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.38;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1689,180,0 chrXI 468702 . C T 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=18.44;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1084,114,0 chrXI 468708 . G A 936 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=16.42;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:969,102,0 chrXI 468710 . G T 894 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=15.68;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:927,105,0 chrXI 468879 . T G 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=84;Dels=0.00;FS=26.408;HaplotypeScore=10.6333;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=0.709;QD=0.52;ReadPosRankSum=-2.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,35:84:74:74,0,669 chrXI 469423 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=16.5290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2924,300,0 chrXI 469719 . G C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3280,360,0 chrXI 469831 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.3607;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.94;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3711,388,0 chrXI 470292 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2887,306,0 chrXI 471365 . T G 2563 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.09;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2596,276,0 chrXI 471378 . A C 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.742;QD=19.03;ReadPosRankSum=2.677;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2259,240,0 chrXI 471379 . C A 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.307;QD=20.59;ReadPosRankSum=1.702;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2401,267,0 chrXI 471993 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.52;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3513,367,0 chrXI 472945 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.14;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3633,387,0 chrXI 473351 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.73;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2453,261,0 chrXI 473414 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.41;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1600,174,0 chrXI 473416 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.50;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1608,168,0 chrXI 473427 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.53;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1633,177,0 chrXI 473465 . A G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=6.061;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.874;QD=17.27;ReadPosRankSum=1.669;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1933,213,0 chrXI 473531 . G T 1980 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.57;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2013,210,0 chrXI 473650 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=26.51;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3765,388,0 chrXI 473718 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.15;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3320,346,0 chrXI 474169 . C A 2691 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.61;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2724,285,0 chrXI 474932 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=167;Dels=0.00;FS=12.641;HaplotypeScore=15.0815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.112;QD=22.67;ReadPosRankSum=3.406;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:4,160:167:99:3786,405,0 chrXI 475195 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.09;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3807,411,0 chrXI 476182 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=7.972;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.766;QD=20.21;ReadPosRankSum=2.404;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3295,360,0 chrXI 476391 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.3985;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.65;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4689,510,0 chrXI 476819 . T C 6134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=259;Dels=0.00;FS=2.840;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-2.012;QD=23.68;ReadPosRankSum=2.402;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:6134,658,0 chrXI 476876 . A T 6456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=262;Dels=0.00;FS=4.210;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.387;QD=24.64;ReadPosRankSum=1.719;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6456,670,0 chrXI 477046 . G A 7009.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=18.2248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-3.493e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:7009,730,0 chrXI 477203 . T C 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=235;Dels=0.00;FS=9.373;HaplotypeScore=14.3852;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.108;QD=22.73;ReadPosRankSum=2.849;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:3,231:235:99:5341,609,0 chrXI 478278 . C T 5210.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.05;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5210,541,0 chrXI 478643 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.19;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3904,403,0 chrXI 478682 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3739,399,0 chrXI 479163 . C G 4513.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.50;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4513,489,0 chrXI 479195 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=2.755;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.264;QD=23.73;ReadPosRankSum=2.419;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3773,420,0 chrXI 479521 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.172;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.949;QD=23.76;ReadPosRankSum=1.702;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2765,303,0 chrXI 480055 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.1256;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3400,366,0 chrXI 480386 . A G 3177 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.22;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3210,354,0 chrXI 480455 . A C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.379;QD=22.86;ReadPosRankSum=1.709;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3361,381,0 chrXI 482428 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7739;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.55;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3855,420,0 chrXI 482654 . A G 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.600;QD=23.67;ReadPosRankSum=1.676;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4355,471,0 chrXI 483350 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=2.876;HaplotypeScore=14.4242;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.259;QD=24.22;ReadPosRankSum=2.420;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4021,429,0 chrXI 483568 . C A 2421 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.97;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2454,264,0 chrXI 483858 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3424,358,0 chrXI 484182 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=3.026;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.495;QD=23.99;ReadPosRankSum=2.422;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4223,450,0 chrXI 484265 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.78;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3569,378,0 chrXI 484887 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2977,324,0 chrXI 486704 . A G 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.1803;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.881;QD=23.45;ReadPosRankSum=1.702;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5463,606,0 chrXI 486922 . A T 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=190;Dels=0.00;FS=6.712;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.368;QD=25.14;ReadPosRankSum=2.398;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4776,505,0 chrXI 487238 . G T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.27;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3592,373,0 chrXI 487439 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.58;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3584,399,0 chrXI 487626 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.58;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,279,0 chrXI 487631 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4361;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.65;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2717,285,0 chrXI 488186 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.78;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5446,580,0 chrXI 488200 . A C 4877.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.2880;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.58;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4877,520,0 chrXI 490945 . T A 1506 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.17;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1539,159,0 chrXI 490946 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.23;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1456,162,0 chrXI 491955 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2404,261,0 chrXI 494622 . T A 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=6.273;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.050;QD=24.41;ReadPosRankSum=2.387;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3857,400,0 chrXI 495987 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.98;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3497,378,0 chrXI 498423 . T A 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=81;Dels=0.00;FS=5.621;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.138;QD=23.70;ReadPosRankSum=2.913;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1953,198,0 chrXI 499999 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.345;QD=23.88;ReadPosRankSum=2.416;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3487,378,0 chrXI 500101 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2278,249,0 chrXI 500136 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.55;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2356,252,0 chrXI 500262 . C A 3060 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.82;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3093,319,0 chrXI 500383 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.26;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3010,324,0 chrXI 500926 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2756,288,0 chrXI 501115 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1566,168,0 chrXI 501178 . T C 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=42;Dels=0.00;FS=2.866;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.384;QD=21.79;ReadPosRankSum=2.333;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:99:948,102,0 chrXI 501241 . A G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=8.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.089;QD=23.59;ReadPosRankSum=1.688;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1873,198,0 chrXI 501250 . T A 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.183;QD=21.79;ReadPosRankSum=1.691;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1885,201,0 chrXI 501319 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.702;QD=21.81;ReadPosRankSum=2.325;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1778,201,0 chrXI 501392 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.38;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2617,279,0 chrXI 501710 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.37;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2909,318,0 chrXI 501881 . A G 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.113;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.976;QD=24.70;ReadPosRankSum=1.690;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4076,444,0 chrXI 501944 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.687;QD=22.51;ReadPosRankSum=2.272;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3421,366,0 chrXI 501970 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=3.203;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.957;QD=22.63;ReadPosRankSum=1.711;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3643,390,0 chrXI 502040 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.03;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3613,399,0 chrXI 502603 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.864;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.365;QD=24.73;ReadPosRankSum=1.713;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4599,490,0 chrXI 502693 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3693,408,0 chrXI 502906 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=150;Dels=0.00;FS=6.107;HaplotypeScore=14.8846;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.181;QD=23.93;ReadPosRankSum=2.953;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3589,384,0 chrXI 503144 . A T 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.412;QD=24.37;ReadPosRankSum=1.674;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2933,312,0 chrXI 503165 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.71;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2690,291,0 chrXI 503229 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.05;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2895,309,0 chrXI 503618 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3273,345,0 chrXI 503732 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.90;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3140,321,0 chrXI 504179 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=3.590;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.272;QD=21.68;ReadPosRankSum=1.597;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2808,306,0 chrXI 504362 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=3.018;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.086;QD=24.10;ReadPosRankSum=2.373;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3118,342,0 chrXI 504574 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.44;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3276,363,0 chrXI 504612 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.585;QD=22.35;ReadPosRankSum=1.708;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3229,348,0 chrXI 504632 . G T 3006 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.47;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3039,321,0 chrXI 504700 . T G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=160;Dels=0.00;FS=3.009;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.224;QD=21.86;ReadPosRankSum=2.372;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3497,396,0 chrXI 504944 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3993,418,0 chrXI 505177 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.630;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.071;QD=21.92;ReadPosRankSum=1.712;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3792,426,0 chrXI 505462 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.20;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2875,312,0 chrXI 505493 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.3361;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=15.70;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2529,267,0 chrXI 505505 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=4.488;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;MQRankSum=-1.031;QD=13.82;ReadPosRankSum=1.711;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2285,243,0 chrXI 505511 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=13.76;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2289,246,0 chrXI 505526 . G T 2340 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;QD=14.90;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2373,246,0 chrXI 505559 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=15.79;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2418,255,0 chrXI 505564 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=16.72;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2341,252,0 chrXI 505640 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.54;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4147,433,0 chrXI 505715 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1006;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=23.81;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4190,439,0 chrXI 505817 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.07;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3923,409,0 chrXI 505998 . C G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3341,369,0 chrXI 506135 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4537,486,0 chrXI 506614 . A G 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.142;DP=241;Dels=0.00;FS=14.365;HaplotypeScore=11.1559;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.432;QD=21.71;ReadPosRankSum=4.166;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:6,234:241:99:5233,591,0 chrXI 506874 . T A 526 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=14.61;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:559,60,0 chrXI 507227 . T G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=25.17;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3322,363,0 chrXI 507254 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.64;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3177,333,0 chrXI 507344 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=147;Dels=0.00;FS=6.873;HaplotypeScore=12.9913;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.636;QD=21.99;ReadPosRankSum=2.416;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3269,372,0 chrXI 507498 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=24.43;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3934,406,0 chrXI 507512 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.84;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3790,399,0 chrXI 507521 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=6.273;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.552;QD=22.03;ReadPosRankSum=2.418;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3502,393,0 chrXI 507844 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1668;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.37;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3118,333,0 chrXI 507899 . C G 2249 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.71;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2282,246,0 chrXI 507925 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.91;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2233,237,0 chrXI 507968 . A G 2795 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.36;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2828,306,0 chrXI 508472 . G A 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.0822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.316;QD=24.06;ReadPosRankSum=-1.680;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4812,479,0 chrXI 508533 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3606,376,0 chrXI 508894 . T C 5479.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5479,592,0 chrXI 508942 . C T 7064.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=17.9095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.24;SB=-3.671e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7064,771,0 chrXI 509106 . T G 5542.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.29;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5542,598,0 chrXI 509190 . C T 5070.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.1208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5070,561,0 chrXI 509442 . T G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=135;Dels=0.00;FS=2.964;HaplotypeScore=14.9046;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.651;QD=22.04;ReadPosRankSum=2.340;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3008,330,0 chrXI 509718 . T A 4587.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.89;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4587,472,0 chrXI 509797 . T C 3000 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.34;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3033,330,0 chrXI 509825 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.68;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3454,372,0 chrXI 509930 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=7.408;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.130;QD=20.73;ReadPosRankSum=2.395;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3731,405,0 chrXI 509944 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.963;DP=169;Dels=0.00;FS=15.257;HaplotypeScore=5.9533;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.123;QD=20.63;ReadPosRankSum=3.997;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:6,163:169:99:3487,378,0 chrXI 510028 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.77;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3779,405,0 chrXI 510202 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.12;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4077,441,0 chrXI 510311 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5910;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.37;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3575,372,0 chrXI 510755 . A T 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.452;HaplotypeScore=8.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.229;QD=22.68;ReadPosRankSum=1.704;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2845,294,0 chrXI 510872 . G T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=25.64;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3641,387,0 chrXI 510905 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.29;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4300,445,0 chrXI 511075 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.989;QD=22.58;ReadPosRankSum=2.386;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4336,465,0 chrXI 511087 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.93;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4145,465,0 chrXI 511186 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.195;QD=23.37;ReadPosRankSum=1.712;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3950,423,0 chrXI 511303 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.18;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3593,402,0 chrXI 511327 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=2.901;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.131;QD=22.64;ReadPosRankSum=2.401;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3442,375,0 chrXI 511387 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.00;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3344,354,0 chrXI 511693 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=7.249;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.410;QD=22.73;ReadPosRankSum=2.324;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3546,393,0 chrXI 511838 . A T 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.202;QD=17.27;ReadPosRankSum=1.687;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1363,144,0 chrXI 511926 . T A 1169 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1202,123,0 chrXI 512200 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.4898;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.73;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5103,547,0 chrXI 512653 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3725,399,0 chrXI 512867 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,164:170:99:3564,393,0 chrXI 513097 . A G 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=201;Dels=0.00;FS=8.759;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.180;QD=21.75;ReadPosRankSum=3.364;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:4,195:201:99:4371,492,0 chrXI 513284 . T C 2638 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8726;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.58;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2671,288,0 chrXI 513425 . C G 1929 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.43;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1962,222,0 chrXI 513438 . A T 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=2.802;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.589;QD=20.67;ReadPosRankSum=2.340;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1893,198,0 chrXI 513454 . G C 1849 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=20.78;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1882,204,0 chrXI 513674 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=80.0424;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.90;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2223,228,0 chrXI 513762 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.59;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2895,306,0 chrXI 514126 . T G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=126;Dels=0.00;FS=2.844;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=24.06;ReadPosRankSum=2.410;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:3065,333,0 chrXI 514669 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=22.24;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4292,489,0 chrXI 514792 . C T 4957.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=22.53;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4957,534,0 chrXI 514873 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.68;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3011,327,0 chrXI 515018 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3363,343,0 chrXI 515098 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=5.630;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=23.66;ReadPosRankSum=1.703;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2801,321,0 chrXI 515611 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=184;Dels=0.00;FS=3.035;HaplotypeScore=10.7962;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.689;QD=21.51;ReadPosRankSum=2.368;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:2,178:184:99:3957,438,0 chrXI 515680 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.94;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4397,463,0 chrXI 515689 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.15;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4292,454,0 chrXI 515713 . C T 4578.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.4583;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.56;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4578,495,0 chrXI 516142 . A G 5674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=260;Dels=0.00;FS=4.604;HaplotypeScore=15.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.518;QD=21.82;ReadPosRankSum=1.691;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:1,253:260:99:5674,648,0 chrXI 516535 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.56;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3137,330,0 chrXI 516541 . T C 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.391;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.883;QD=19.25;ReadPosRankSum=1.687;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3036,336,0 chrXI 516614 . G C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.2088;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.82;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3491,375,0 chrXI 517129 . T A 1483 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.17;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1516,159,0 chrXI 517143 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.979;QD=20.41;ReadPosRankSum=1.582;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1441,156,0 chrXI 517179 . T C 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.028;QD=20.90;ReadPosRankSum=1.674;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1266,138,0 chrXI 517238 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=23.10;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1211,126,0 chrXI 517259 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=20.83;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1512,165,0 chrXI 517456 . G T 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=0.727;QD=12.49;ReadPosRankSum=-0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:82,9,0 chrXI 517784 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=2.48;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:46,6,0 chrXI 517860 . T G 2796 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=23.90;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2829,303,0 chrXI 518139 . T C 395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=95;Dels=0.00;FS=4.782;HaplotypeScore=5.8675;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.941;QD=4.16;ReadPosRankSum=3.084;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:7,88:95:57:428,57,0 chrXI 518221 . C T 6316.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.7058;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.88;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,233:235:99:6316,655,0 chrXI 518512 . A G 8572.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=373;Dels=0.00;FS=10.486;HaplotypeScore=24.0114;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.339;QD=22.98;ReadPosRankSum=2.981;SB=-4.407e+03 GT:AD:DP:GQ:PL 1/1:3,367:373:99:8572,972,0 chrXI 518577 . G A 7291.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.37;SB=-4.457e+03 GT:AD:DP:GQ:PL 1/1:0,324:326:99:7291,763,0 chrXI 518593 . G A 6213.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=22.0476;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.92;SB=-3.726e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:6213,652,0 chrXI 518633 . T A 6729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=305;Dels=0.00;FS=2.835;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.036;QD=22.06;ReadPosRankSum=2.417;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:6729,721,0 chrXI 519321 . A C 1738 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.46;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1771,192,0 chrXI 519488 . A G 2711 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.79;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2744,315,0 chrXI 519490 . A G 2810 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.22;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2843,303,0 chrXI 519553 . A G 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=221;Dels=0.00;FS=16.552;HaplotypeScore=13.7545;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-2.024;QD=21.02;ReadPosRankSum=2.427;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,217:221:99:4645,510,0 chrXI 519665 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.991;QD=21.59;ReadPosRankSum=1.097;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4987,532,0 chrXI 519687 . C A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.1263;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.01;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4942,523,0 chrXI 519796 . T C 2902 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=437;Dels=0.00;FS=17.559;HaplotypeScore=340.7664;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;MQRankSum=1.727;QD=6.64;ReadPosRankSum=3.517;SB=-5.107e+03 GT:AD:DP:GQ:PL 1/1:5,428:437:99:2935,321,0 chrXI 519910 . G A 9124.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=20.5492;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.64;SB=-4.725e+03 GT:AD:DP:GQ:PL 1/1:0,400:403:99:9124,994,0 chrXI 520210 . T C 7438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=334;Dels=0.00;FS=3.022;HaplotypeScore=16.5036;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.782;QD=22.27;ReadPosRankSum=2.420;SB=-3.932e+03 GT:AD:DP:GQ:PL 1/1:2,329:334:99:7438,831,0 chrXI 520276 . G A 7251.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=21.2674;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.87;SB=-3.786e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:7251,766,0 chrXI 520399 . C T 7468.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=17.7899;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.71;SB=-3.708e+03 GT:AD:DP:GQ:PL 1/1:0,314:315:99:7468,769,0 chrXI 520634 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2363,240,0 chrXI 521062 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=214;Dels=0.00;FS=2.996;HaplotypeScore=12.9500;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.182;QD=24.29;ReadPosRankSum=2.415;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:5197,561,0 chrXI 521128 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.72;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5788,601,0 chrXI 521261 . G A 7814.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=22.7429;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.42;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:7814,817,0 chrXI 521362 . T C 6668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=19.6230;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.963;QD=20.84;ReadPosRankSum=1.710;SB=-4.056e+03 GT:AD:DP:GQ:PL 1/1:1,319:320:99:6668,715,0 chrXI 521680 . G T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.42;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4306,474,0 chrXI 521756 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.24;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3780,411,0 chrXI 522077 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.47;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4811,528,0 chrXI 522153 . G A 6418.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6418,664,0 chrXI 522560 . C G 4177.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4177,450,0 chrXI 522668 . A C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.33;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3896,426,0 chrXI 522994 . C A 5316.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=2.3656;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.79;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5316,550,0 chrXI 522995 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.17;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5343,553,0 chrXI 523041 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.12;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5331,553,0 chrXI 523091 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.48;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4630,498,0 chrXI 523140 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=4.068;HaplotypeScore=4.9421;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.715;QD=22.37;ReadPosRankSum=1.680;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4452,477,0 chrXI 523152 . A C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.111;QD=22.16;ReadPosRankSum=1.715;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4521,504,0 chrXI 523661 . T C 2548 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-8.833;DP=368;Dels=0.00;FS=7.695;HaplotypeScore=329.7522;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=9.873;QD=6.92;ReadPosRankSum=-15.712;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:144,223:368:99:2581,288,0 chrXI 523718 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=13.0093;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=15.31;SB=-3.953e+03 GT:AD:DP:GQ:PL 1/1:0,287:290:99:4441,460,0 chrXI 524060 . G A 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;DP=12;Dels=0.00;FS=6.990;HaplotypeScore=6.3955;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=1.393;QD=3.83;ReadPosRankSum=-1.741;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,9:12:9:78,9,0 chrXI 524191 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=16.44;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1003,114,0 chrXI 524201 . C T 1060 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=17.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1093,117,0 chrXI 524202 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=15.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:64:99:993,117,0 chrXI 524433 . C T 7065.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.0347;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.70;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7065,736,0 chrXI 524511 . C A 6300.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=18.2286;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.42;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,264:269:99:6300,696,0 chrXI 525301 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.47;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:52,6,0 chrXI 525302 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrXI 525489 . T A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3579,375,0 chrXI 525645 . T C 6614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=291;Dels=0.00;FS=9.258;HaplotypeScore=21.8095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.218;QD=22.73;ReadPosRankSum=2.927;SB=-3.740e+03 GT:AD:DP:GQ:PL 1/1:3,287:291:99:6614,718,0 chrXI 525867 . G C 5633.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.2037;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.53;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5633,612,0 chrXI 525905 . C T 6292.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=28.3989;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.48;SB=-3.371e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6292,667,0 chrXI 526035 . C G 5938.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.29;SB=-3.256e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5938,654,0 chrXI 526428 . C T 5402.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.39;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5402,565,0 chrXI 526706 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.95;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3358,366,0 chrXI 527413 . T C 5916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=259;Dels=0.00;FS=2.858;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.218;QD=22.84;ReadPosRankSum=2.430;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:2,255:259:99:5916,631,0 chrXI 527498 . G C 5647.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.06;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,248:256:99:5647,624,0 chrXI 527511 . A G 5544.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=6.0893;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.54;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5544,589,0 chrXI 527561 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.93;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4487,486,0 chrXI 527632 . C T 4936.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.8731;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.48;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4936,520,0 chrXI 527638 . T C 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=250;Dels=0.00;FS=14.103;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.208;QD=20.54;ReadPosRankSum=2.947;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:3,243:250:99:5135,550,0 chrXI 527758 . G T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=18.53;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3465,369,0 chrXI 527782 . T A 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.393;QD=17.68;ReadPosRankSum=1.661;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3430,360,0 chrXI 527820 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.01;FS=0.000;HaplotypeScore=25.7532;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.73;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4123,462,0 chrXI 528028 . T C 7619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=330;Dels=0.00;FS=5.216;HaplotypeScore=19.3745;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.618;QD=23.09;ReadPosRankSum=3.361;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:4,325:330:99:7619,829,0 chrXI 528277 . A C 6315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=286;Dels=0.00;FS=6.480;HaplotypeScore=23.5510;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.657;QD=22.08;ReadPosRankSum=2.415;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:2,281:286:99:6315,714,0 chrXI 528761 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.1015;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.624;QD=22.07;ReadPosRankSum=1.696;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4259,480,0 chrXI 528861 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.53;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3671,384,0 chrXI 528889 . G C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.67;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4103,444,0 chrXI 528990 . A T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3805;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.54;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3831,400,0 chrXI 529173 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=208;Dels=0.00;FS=9.223;HaplotypeScore=11.3286;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.098;QD=19.25;ReadPosRankSum=2.937;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:3,203:208:99:4003,450,0 chrXI 529197 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.5830;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.777;QD=20.94;ReadPosRankSum=1.101;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4522,495,0 chrXI 529358 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.2335;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.57;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4767,490,0 chrXI 529548 . C G 4501.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.94;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4501,489,0 chrXI 529895 . G A 6180.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.68;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6180,637,0 chrXI 529983 . T G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=5.504;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.034;QD=18.33;ReadPosRankSum=1.698;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:3830,435,0 chrXI 530005 . C G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.17;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4256,459,0 chrXI 530289 . T C 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=7.418;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.882;QD=22.34;ReadPosRankSum=2.338;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4467,492,0 chrXI 530304 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.52;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4369,474,0 chrXI 531524 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2823,297,0 chrXI 531530 . G T 2878 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.66;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2911,303,0 chrXI 531608 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.24;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2791,303,0 chrXI 531623 . A T 2849 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.79;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2882,306,0 chrXI 531803 . T G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.86;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3412,381,0 chrXI 531920 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.39;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4093,444,0 chrXI 532119 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.55;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4296,457,0 chrXI 532175 . T G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.58;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3702,405,0 chrXI 532258 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.065;QD=23.46;ReadPosRankSum=1.667;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3754,402,0 chrXI 532450 . C A 2210 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.26;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2243,237,0 chrXI 532495 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6524;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.34;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2613,273,0 chrXI 532520 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.905;QD=22.44;ReadPosRankSum=1.457;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2008,216,0 chrXI 532548 . C A 53.97 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=0.51;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:9:86,9,0 chrXI 532628 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.85;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4756,499,0 chrXI 532742 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7282;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.59;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3586,393,0 chrXI 532847 . G T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.8882;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.72;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4498,475,0 chrXI 533126 . T C 4701.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4701,507,0 chrXI 533229 . G C 5486.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.96;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5486,589,0 chrXI 533494 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.289;QD=22.09;ReadPosRankSum=1.706;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2949,318,0 chrXI 533550 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=6.5786;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.29;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3284,342,0 chrXI 533572 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.28;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3083,333,0 chrXI 533670 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=170;Dels=0.00;FS=2.577;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.780;QD=24.19;ReadPosRankSum=2.875;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:4113,441,0 chrXI 533844 . A T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.46;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3729,396,0 chrXI 534309 . C T 5857.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.00;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,240:244:99:5857,616,0 chrXI 537672 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.13;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3737,391,0 chrXI 537837 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DP=156;Dels=0.00;FS=2.952;HaplotypeScore=12.7589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.449;QD=17.45;ReadPosRankSum=2.418;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2755,272,0 chrXI 537898 . G C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.49;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3894,423,0 chrXI 537993 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.89;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3858,403,0 chrXI 538129 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3298,348,0 chrXI 538933 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3696,382,0 chrXI 539120 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.19;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3256,357,0 chrXI 539661 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4346;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.82;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3400,366,0 chrXI 539877 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3526,375,0 chrXI 540097 . C G 2896 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2929,330,0 chrXI 540251 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.32;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2365,249,0 chrXI 540879 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.88;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2367,252,0 chrXI 540885 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=104;Dels=0.00;FS=3.468;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.762;QD=21.44;ReadPosRankSum=1.697;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,99:104:99:2263,240,0 chrXI 540904 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.89;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2643,270,0 chrXI 540946 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.69;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2393,249,0 chrXI 541941 . G C 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2515,276,0 chrXI 542085 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2679,285,0 chrXI 542349 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=123;Dels=0.00;FS=8.388;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.056;QD=18.96;ReadPosRankSum=2.409;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,118:123:99:2365,273,0 chrXI 542352 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.75;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2414,264,0 chrXI 542597 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=6.721;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.569;QD=20.00;ReadPosRankSum=2.413;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2773,306,0 chrXI 542924 . G C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3776,408,0 chrXI 543203 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2599,270,0 chrXI 543396 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2328,243,0 chrXI 543728 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5798;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.86;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1942,210,0 chrXI 543951 . T C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.610;QD=24.28;ReadPosRankSum=2.364;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2850,309,0 chrXI 544019 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2850,294,0 chrXI 544374 . A T 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=3.023;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.027;QD=21.97;ReadPosRankSum=2.414;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3087,333,0 chrXI 544580 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.75;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3195,345,0 chrXI 544682 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.24;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3264,340,0 chrXI 544698 . G T 3092 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.77;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3125,336,0 chrXI 544856 . G T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.22;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3304,348,0 chrXI 545136 . C G 2609 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.72;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2642,288,0 chrXI 545405 . T C 2507 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.99;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2540,279,0 chrXI 545416 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.73;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2624,270,0 chrXI 545611 . C A 2589 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.20;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2622,276,0 chrXI 545874 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3288,348,0 chrXI 545963 . T C 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.958;QD=23.98;ReadPosRankSum=1.671;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4148,453,0 chrXI 546238 . G A 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4637;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.170;QD=24.20;ReadPosRankSum=0.844;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2864,303,0 chrXI 546387 . C A 2467 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.95;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2500,267,0 chrXI 546403 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.05;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2194,231,0 chrXI 546444 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.36;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2649,288,0 chrXI 546936 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.29;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3425,372,0 chrXI 547019 . A C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.295;QD=21.54;ReadPosRankSum=1.629;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2941,318,0 chrXI 547133 . A G 2783 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.79;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2816,300,0 chrXI 547332 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.8874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3242,351,0 chrXI 547855 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.97;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2468,264,0 chrXI 547921 . C A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.27;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3470,363,0 chrXI 548064 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.53;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3530,381,0 chrXI 548122 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.44;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4071,424,0 chrXI 548175 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.38;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3671,387,0 chrXI 548301 . A C 5989.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.06;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5989,646,0 chrXI 548668 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.00;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4368,457,0 chrXI 548688 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.34;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3755,402,0 chrXI 548697 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=178;Dels=0.00;FS=3.035;HaplotypeScore=6.6587;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.453;QD=20.98;ReadPosRankSum=2.365;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3735,399,0 chrXI 548841 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.811;QD=23.97;ReadPosRankSum=1.666;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3811,402,0 chrXI 549098 . T A 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.661;QD=24.89;ReadPosRankSum=1.661;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2447,258,0 chrXI 549132 . A C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.555;QD=21.85;ReadPosRankSum=1.697;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2174,231,0 chrXI 549137 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.44;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2016,216,0 chrXI 549235 . T G 1694 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0812;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.21;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1727,192,0 chrXI 549266 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.68;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1525,162,0 chrXI 549422 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.57;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2385,249,0 chrXI 549464 . A C 1703 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=66.6891;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.02;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1736,192,0 chrXI 549543 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.68;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3253,336,0 chrXI 549575 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.40;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3709,382,0 chrXI 550068 . T C 2906 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2320;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.85;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2939,333,0 chrXI 550278 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.91;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3801,402,0 chrXI 550302 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.96;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3696,396,0 chrXI 550343 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.822;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.911;QD=22.10;ReadPosRankSum=-1.492;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3823,438,0 chrXI 550500 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=5.163;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.916;QD=21.67;ReadPosRankSum=1.712;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3771,417,0 chrXI 551284 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.99;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4092,447,0 chrXI 551392 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3119,342,0 chrXI 551512 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.53;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2903,300,0 chrXI 551750 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.402;QD=23.88;ReadPosRankSum=1.699;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2564,282,0 chrXI 551818 . T A 2506 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7441;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.37;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2539,261,0 chrXI 551893 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.1074;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.25;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2498,264,0 chrXI 552591 . C A 2989 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3022,315,0 chrXI 552627 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.88;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3416,363,0 chrXI 552756 . C G 4606.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4849;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.76;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4606,504,0 chrXI 552901 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=4.014;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.706;QD=24.12;ReadPosRankSum=1.640;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4583,501,0 chrXI 552927 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9305;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.37;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4363,451,0 chrXI 552998 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=160;Dels=0.00;FS=5.295;HaplotypeScore=10.5705;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.044;QD=24.53;ReadPosRankSum=2.956;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3925,417,0 chrXI 553078 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.18;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3189,345,0 chrXI 553084 . A G 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=6.286;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.204;QD=19.72;ReadPosRankSum=2.400;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3010,336,0 chrXI 553304 . T A 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=10.918;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.340;QD=22.17;ReadPosRankSum=2.951;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3181,339,0 chrXI 553342 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=182;Dels=0.00;FS=2.884;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.572;QD=23.54;ReadPosRankSum=2.369;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4284,456,0 chrXI 553992 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.14;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3525,381,0 chrXI 554162 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.79;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2790,303,0 chrXI 554163 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.88;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2979,306,0 chrXI 554207 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=2.801;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.902;QD=17.74;ReadPosRankSum=2.418;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:2854,312,0 chrXI 554227 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.45;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2875,309,0 chrXI 554305 . C G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.48;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3282,369,0 chrXI 554554 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2948,309,0 chrXI 555181 . A G 1788 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=91;MQRankSum=0.332;QD=9.41;ReadPosRankSum=1.662;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:27,162:190:99:1821,198,0 chrXI 555214 . T C 1770 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.076;DP=182;Dels=0.00;FS=87.175;HaplotypeScore=15.1794;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=60;MQRankSum=-0.295;QD=9.73;ReadPosRankSum=4.112;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:6,174:182:99:1803,195,0 chrXI 555298 . G A 527.05 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.445;DP=266;Dels=0.00;FS=10.634;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=211;MQRankSum=-1.039;QD=1.98;ReadPosRankSum=0.073;SB=-8.906e+01 GT:AD:DP:GQ:PL 1/1:101,163:266:22:560,22,0 chrXI 556375 . T C 393 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.12;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:426,45,0 chrXI 556468 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=15.03;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:57:514,57,0 chrXI 556475 . A T 507 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=13.34;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:57:540,57,0 chrXI 556484 . A G 509 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=12.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:57:542,57,0 chrXI 556642 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.81;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2713,282,0 chrXI 556734 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.99;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3622,396,0 chrXI 557093 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3169,348,0 chrXI 557299 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.83;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2590,273,0 chrXI 557345 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=70;Dels=0.00;FS=7.490;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.127;QD=22.07;ReadPosRankSum=2.341;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,66:70:99:1578,171,0 chrXI 557824 . C G 2373 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2406,261,0 chrXI 558102 . C G 2885 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.06;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2918,327,0 chrXI 558133 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.52;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3096,327,0 chrXI 558496 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.560;QD=21.31;ReadPosRankSum=1.679;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2803,309,0 chrXI 558670 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=134;Dels=0.00;FS=8.429;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.007;QD=23.93;ReadPosRankSum=3.393;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:99:3239,342,0 chrXI 558690 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=2.636;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.008;QD=23.10;ReadPosRankSum=2.416;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3395,372,0 chrXI 558747 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.65;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3193,354,0 chrXI 558798 . T G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.9579;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.908;QD=22.69;ReadPosRankSum=1.711;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3744,426,0 chrXI 558976 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.32;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4477,492,0 chrXI 559170 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2264,231,0 chrXI 559244 . A C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.7503;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.696;QD=22.20;ReadPosRankSum=1.339;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2209,225,0 chrXI 559313 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1814,192,0 chrXI 559408 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=25.52;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3343,363,0 chrXI 559452 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=26.60;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3225,339,0 chrXI 559595 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5930;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.67;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3947,415,0 chrXI 559636 . T A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.74;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3616,390,0 chrXI 559644 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.54;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3538,364,0 chrXI 559707 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=3.003;HaplotypeScore=11.4211;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.973;QD=21.89;ReadPosRankSum=2.364;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3787,411,0 chrXI 559809 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.06;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3633,381,0 chrXI 560783 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.146;QD=25.38;ReadPosRankSum=1.707;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3452,366,0 chrXI 561047 . T C 2617 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.18;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2650,291,0 chrXI 561071 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.68;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2210,228,0 chrXI 561959 . G A 6466.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.2181;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.77;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6466,697,0 chrXI 562081 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.28;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4565,475,0 chrXI 562229 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.4028;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.01;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4465,463,0 chrXI 562426 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=190;Dels=0.00;FS=3.027;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.071;QD=23.71;ReadPosRankSum=2.424;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4504,480,0 chrXI 562470 . G T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2800;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.86;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4300,448,0 chrXI 562768 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8174;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.91;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3849,408,0 chrXI 562866 . A G 5153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.6889;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.194;QD=23.42;ReadPosRankSum=1.685;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5153,558,0 chrXI 563008 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4751,499,0 chrXI 563181 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.77;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3715,385,0 chrXI 563365 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.22;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2431,264,0 chrXI 563390 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.30;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2130,222,0 chrXI 563641 . A T 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=4.337;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.000;QD=25.57;ReadPosRankSum=1.702;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2948,309,0 chrXI 563812 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.114;QD=24.39;ReadPosRankSum=1.704;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3008,327,0 chrXI 564538 . T C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.918;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.242;QD=20.40;ReadPosRankSum=1.667;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2195,249,0 chrXI 564676 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.88;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2372,249,0 chrXI 564715 . T G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.237;QD=25.52;ReadPosRankSum=1.626;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2534,270,0 chrXI 565014 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.72;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2752,297,0 chrXI 565184 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.44;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2771,288,0 chrXI 565671 . A G 6364.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=21.6035;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.75;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6364,682,0 chrXI 565796 . G A 5718.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5718,592,0 chrXI 566044 . A G 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=16.48;ReadPosRankSum=1.654;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:81:758,81,0 chrXI 566085 . C T 247 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=7.97;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:30:280,30,0 chrXI 566095 . A C 370 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=9.49;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:45:403,45,0 chrXI 566185 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=25.66;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2009,213,0 chrXI 566379 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.33;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3952,414,0 chrXI 566530 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=237;Dels=0.00;FS=5.330;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.236;QD=20.14;ReadPosRankSum=2.927;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:3,231:237:99:4772,540,0 chrXI 566543 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=255;Dels=0.00;FS=2.702;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-0.989;QD=19.86;ReadPosRankSum=2.401;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:2,251:255:99:5064,549,0 chrXI 566551 . T C 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.520;QD=19.67;ReadPosRankSum=1.692;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5114,547,0 chrXI 566653 . G A 5402.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.5878;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.99;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5402,568,0 chrXI 566731 . G A 6750.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.2306;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.20;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,288:291:99:6750,733,0 chrXI 567055 . G A 7027.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=14.4349;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.17;SB=-3.753e+03 GT:AD:DP:GQ:PL 1/1:0,331:332:99:7027,748,0 chrXI 567076 . T G 6899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=342;Dels=0.00;FS=15.173;HaplotypeScore=14.4198;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.408;QD=20.17;ReadPosRankSum=3.287;SB=-3.506e+03 GT:AD:DP:GQ:PL 1/1:4,334:341:99:6899,762,0 chrXI 567598 . T G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.94;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4525,481,0 chrXI 567633 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4270,459,0 chrXI 568028 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=199;Dels=0.00;FS=6.087;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.051;QD=20.08;ReadPosRankSum=2.873;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3996,453,0 chrXI 568037 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.641;QD=20.43;ReadPosRankSum=1.623;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3902,441,0 chrXI 568100 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.071;QD=20.56;ReadPosRankSum=1.712;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3557,405,0 chrXI 568283 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=17.9515;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.522;QD=21.42;ReadPosRankSum=-0.976;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3577,396,0 chrXI 568316 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=171;Dels=0.00;FS=9.178;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.058;QD=22.74;ReadPosRankSum=3.378;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3888,420,0 chrXI 568472 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.21;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2920,303,0 chrXI 568502 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.03;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3546,402,0 chrXI 568908 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4743,510,0 chrXI 569085 . T C 2643 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2676,291,0 chrXI 569468 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.38;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4188,445,0 chrXI 569606 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3290,345,0 chrXI 570049 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.88;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2506,264,0 chrXI 570270 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=14.0298;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.83;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2567,270,0 chrXI 570608 . A C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=184;Dels=0.00;FS=3.280;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.521;QD=23.82;ReadPosRankSum=1.694;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4382,474,0 chrXI 570688 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.711;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.241;QD=22.58;ReadPosRankSum=1.708;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3217,348,0 chrXI 570835 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.331;QD=22.35;ReadPosRankSum=1.707;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3073,336,0 chrXI 570916 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=18.86;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2183,225,0 chrXI 570918 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=18.02;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2033,216,0 chrXI 570938 . C T 1590 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=14.07;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1623,180,0 chrXI 570942 . T C 1546 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;MQRankSum=-1.059;QD=13.44;ReadPosRankSum=1.230;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1579,180,0 chrXI 570944 . A G 1612 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=13.78;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1645,177,0 chrXI 571008 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=115;Dels=0.00;FS=9.998;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.241;QD=20.72;ReadPosRankSum=2.938;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:3,110:115:99:2416,261,0 chrXI 571051 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=23.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3192,345,0 chrXI 571146 . T A 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.962;QD=23.90;ReadPosRankSum=1.662;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2399,261,0 chrXI 571204 . G C 2954 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.82;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2987,321,0 chrXI 571236 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.58;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3262,354,0 chrXI 571243 . T A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.84;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3362,346,0 chrXI 571283 . A T 2106 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.15;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2139,222,0 chrXI 571323 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.00;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1353,141,0 chrXI 571329 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.50;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1293,138,0 chrXI 571557 . C T 1351 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1384,147,0 chrXI 571596 . A G 2001 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2034,216,0 chrXI 571752 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.09;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2610,288,0 chrXI 571872 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=3.393;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.083;QD=21.74;ReadPosRankSum=1.711;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3653,405,0 chrXI 572316 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=202;Dels=0.00;FS=3.011;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.837;QD=22.52;ReadPosRankSum=2.400;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,196:202:99:4549,498,0 chrXI 572346 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.69;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4098,438,0 chrXI 572448 . T A 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=4.678;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.889;QD=23.91;ReadPosRankSum=1.695;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4448,469,0 chrXI 572498 . T C 2987 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.91;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3020,333,0 chrXI 572522 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.38;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2813,300,0 chrXI 572586 . A G 2287 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.55;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2320,255,0 chrXI 572589 . G A 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=117;Dels=0.00;FS=7.903;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.283;QD=20.15;ReadPosRankSum=2.322;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2390,252,0 chrXI 572739 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.26;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2920,318,0 chrXI 573116 . G A 6948.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=11.4413;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.38;SB=-3.800e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6948,721,0 chrXI 573180 . T A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=23.5049;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.95;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4149,450,0 chrXI 573386 . T A 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=132;Dels=0.00;FS=5.629;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.061;QD=23.26;ReadPosRankSum=2.947;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3103,342,0 chrXI 573599 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.32;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3210,345,0 chrXI 574134 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3948,415,0 chrXI 574626 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.278;QD=22.24;ReadPosRankSum=1.713;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4047,435,0 chrXI 574667 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.28;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3701,385,0 chrXI 574927 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.31;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3268,363,0 chrXI 575132 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=158;Dels=0.00;FS=2.987;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.636;QD=22.84;ReadPosRankSum=2.387;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3608,384,0 chrXI 575153 . A T 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=144;Dels=0.02;FS=6.002;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.207;QD=19.83;ReadPosRankSum=2.893;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2889,309,0 chrXI 575157 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=2.008;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=2.625;QD=19.28;ReadPosRankSum=3.330;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:2906,318,0 chrXI 575225 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.92;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3879,411,0 chrXI 575327 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5972;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.70;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3976,412,0 chrXI 575413 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.05;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3326,363,0 chrXI 575606 . T G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=123;Dels=0.00;FS=9.947;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.737;QD=21.82;ReadPosRankSum=2.941;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,116:123:99:2717,297,0 chrXI 575717 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.14;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2995,321,0 chrXI 575843 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.75;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2795,318,0 chrXI 575852 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=121;Dels=0.00;FS=8.086;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.006;QD=22.44;ReadPosRankSum=2.389;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2748,303,0 chrXI 576007 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.70;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2268,237,0 chrXI 576302 . C G 2196 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=23.87;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2229,243,0 chrXI 576352 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.12;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3048,333,0 chrXI 576525 . G A 167.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.410;DP=155;Dels=0.00;FS=1.884;HaplotypeScore=17.1449;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=1;MQRankSum=0.445;QD=1.08;ReadPosRankSum=-3.972;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:125,27:155:99:197,0,1100 chrXI 576555 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.4471;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=12.14;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2243,267,0 chrXI 576797 . G A 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=183;Dels=0.00;FS=3.229;HaplotypeScore=12.0578;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.467;QD=23.75;ReadPosRankSum=0.369;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4346,454,0 chrXI 576947 . A G 4797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=198;Dels=0.00;FS=4.194;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.662;QD=24.23;ReadPosRankSum=1.662;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4797,511,0 chrXI 577185 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.012;QD=22.58;ReadPosRankSum=1.710;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3523,393,0 chrXI 577326 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1541;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.95;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3693,396,0 chrXI 577353 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0127;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.495;QD=23.12;ReadPosRankSum=1.668;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3768,414,0 chrXI 577440 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=2.934;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.296;QD=23.69;ReadPosRankSum=2.406;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4028,444,0 chrXI 577769 . T C 4172.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.96;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4172,453,0 chrXI 577779 . G T 4162.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.13;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4162,436,0 chrXI 578482 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.89;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3656,423,0 chrXI 578669 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4888;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.83;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4345,454,0 chrXI 578716 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.99;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4274,448,0 chrXI 578824 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=4.163;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.263;QD=22.54;ReadPosRankSum=1.706;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3076,339,0 chrXI 578904 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.99;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2744,297,0 chrXI 578942 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.16;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1807,195,0 chrXI 578945 . T A 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.01;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1924,198,0 chrXI 579126 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=2.960;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.299;QD=22.79;ReadPosRankSum=2.354;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2403,267,0 chrXI 579180 . A G 3043 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1827;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.34;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3076,324,0 chrXI 579541 . T C 2231 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2264,255,0 chrXI 579622 . T G 2245 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.23;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2278,252,0 chrXI 579634 . G T 2411 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.18;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2444,258,0 chrXI 579792 . T C 1358 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.62;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1391,156,0 chrXI 580030 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=7.022;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.897;QD=21.61;ReadPosRankSum=2.417;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3284,354,0 chrXI 580152 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.6993;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.66;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4731,507,0 chrXI 580181 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.15;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3936,414,0 chrXI 580214 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.46;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2757,300,0 chrXI 580227 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.27;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2596,294,0 chrXI 580415 . C T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=25.56;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5291,553,0 chrXI 580625 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4438,489,0 chrXI 580901 . G A 88.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=9.81;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:121,15,0 chrXI 581163 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.505;QD=21.38;ReadPosRankSum=2.375;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1444,162,0 chrXI 585038 . C A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.88;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4702,493,0 chrXI 586229 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.87;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3006,324,0 chrXI 586256 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=6.561;HaplotypeScore=5.1402;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=0.030;QD=20.06;ReadPosRankSum=2.253;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2561,279,0 chrXI 586259 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.835;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=1.002;QD=19.70;ReadPosRankSum=1.716;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2476,270,0 chrXI 586293 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=14.95;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1543,162,0 chrXI 586298 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=15.63;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1580,165,0 chrXI 586366 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.32;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2336,258,0 chrXI 586587 . A G 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.395;QD=24.76;ReadPosRankSum=1.702;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2856,309,0 chrXI 587074 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4251,456,0 chrXI 587134 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3602,390,0 chrXI 587530 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.217;QD=24.80;ReadPosRankSum=1.703;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3034,330,0 chrXI 587857 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.56;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3414,357,0 chrXI 588209 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3331,357,0 chrXI 588593 . A G 4840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=3.694;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.078;QD=24.32;ReadPosRankSum=1.715;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4840,522,0 chrXI 588609 . T C 4787.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.69;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4787,525,0 chrXI 588805 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.41;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4707,513,0 chrXI 588930 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=3.642;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.668;QD=21.90;ReadPosRankSum=1.624;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4292,462,0 chrXI 588939 . T C 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.642;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.559;QD=22.36;ReadPosRankSum=1.714;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4315,468,0 chrXI 589078 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=2.995;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.614;QD=21.90;ReadPosRankSum=2.383;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3252,366,0 chrXI 589279 . A G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=5.963;HaplotypeScore=10.5905;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.645;QD=22.86;ReadPosRankSum=2.863;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3210,348,0 chrXI 589327 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.46;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2548,267,0 chrXI 589369 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.997;QD=21.71;ReadPosRankSum=1.653;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2920,321,0 chrXI 589384 . T C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.332;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.435;QD=21.48;ReadPosRankSum=1.683;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3040,345,0 chrXI 589512 . C A 2673 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.04;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2706,294,0 chrXI 589534 . G C 2638 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.80;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2671,294,0 chrXI 589580 . G T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.3332;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.65;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3760,402,0 chrXI 589694 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=2.993;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.861;QD=21.87;ReadPosRankSum=2.412;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2876,318,0 chrXI 589750 . T A 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.02;FS=3.042;HaplotypeScore=35.0873;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.361;QD=21.13;ReadPosRankSum=1.682;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3033,312,0 chrXI 589759 . G C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.036;QD=20.08;ReadPosRankSum=1.708;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2944,318,0 chrXI 589814 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.88;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2796,288,0 chrXI 589828 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=141;Dels=0.00;FS=11.846;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.446;QD=20.07;ReadPosRankSum=2.950;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2863,306,0 chrXI 589884 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=111;Dels=0.00;FS=2.586;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.454;QD=19.65;ReadPosRankSum=2.899;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:3,106:111:99:2214,237,0 chrXI 589892 . C G 2357 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.23;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2390,261,0 chrXI 589939 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.395;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.587;QD=21.66;ReadPosRankSum=1.673;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2589,291,0 chrXI 589997 . T G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.811;HaplotypeScore=7.4024;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.292;QD=22.77;ReadPosRankSum=1.698;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2356,258,0 chrXI 590023 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=24.50;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2091,216,0 chrXI 590065 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.82;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1715,177,0 chrXI 590067 . T G 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-0.801;QD=17.31;ReadPosRankSum=1.658;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1660,186,0 chrXI 590322 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.93;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3541,375,0 chrXI 590748 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=183;Dels=0.00;FS=5.377;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.856;QD=22.45;ReadPosRankSum=2.962;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,179:183:99:4109,441,0 chrXI 590994 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3509,369,0 chrXI 591628 . C G 2685 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.81;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2718,303,0 chrXI 591644 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.79;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2822,300,0 chrXI 591688 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0910;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.13;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3132,324,0 chrXI 591782 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.019;QD=21.71;ReadPosRankSum=1.712;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3713,405,0 chrXI 591788 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.30;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3791,397,0 chrXI 591912 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=3.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.020;QD=21.77;ReadPosRankSum=2.397;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3102,336,0 chrXI 591920 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.50;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3150,339,0 chrXI 592340 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=193;Dels=0.00;FS=12.364;HaplotypeScore=9.7582;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.278;QD=21.34;ReadPosRankSum=3.305;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:4,188:193:99:4119,441,0 chrXI 592349 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=191;Dels=0.00;FS=6.090;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.578;QD=20.65;ReadPosRankSum=2.411;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:3944,444,0 chrXI 592478 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=168;Dels=0.00;FS=2.674;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.964;QD=21.88;ReadPosRankSum=2.361;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3675,399,0 chrXI 592577 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=152;Dels=0.00;FS=2.755;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.057;QD=21.83;ReadPosRankSum=2.417;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3318,357,0 chrXI 592615 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.6810;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.124;QD=17.75;ReadPosRankSum=1.685;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:2713,309,0 chrXI 592616 . C G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0134;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.766;QD=18.15;ReadPosRankSum=1.709;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2737,309,0 chrXI 594186 . T G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=5.338;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.412;QD=23.53;ReadPosRankSum=1.709;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3459,372,0 chrXI 594718 . A G 2150 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.89;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2183,237,0 chrXI 594744 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.23;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2311,240,0 chrXI 594835 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.56;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2515,282,0 chrXI 594943 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.71;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2054,210,0 chrXI 594957 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.62;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1683,171,0 chrXI 594987 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=86;Dels=0.00;FS=6.606;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.449;QD=18.81;ReadPosRankSum=2.392;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1651,180,0 chrXI 595260 . T G 2243 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.86;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2276,258,0 chrXI 595509 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.44;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3015,315,0 chrXI 595517 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.80;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2627,282,0 chrXI 595879 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2403,252,0 chrXI 595973 . C A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.84;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3329,340,0 chrXI 596000 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.516;QD=21.18;ReadPosRankSum=2.224;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2829,304,0 chrXI 596201 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.62;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1797,198,0 chrXI 596520 . C G 2464 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.16;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2497,267,0 chrXI 596556 . C G 3083 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3116,357,0 chrXI 596823 . A G 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.216;QD=21.89;ReadPosRankSum=1.695;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2091,225,0 chrXI 596996 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=74.3786;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.92;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1644,171,0 chrXI 597058 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=14.3080;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.23;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2114,219,0 chrXI 597106 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.131;QD=22.78;ReadPosRankSum=1.675;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2835,303,0 chrXI 597150 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5249;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.55;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3249,348,0 chrXI 597399 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=6.182;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.469;QD=22.01;ReadPosRankSum=2.424;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4248,453,0 chrXI 597700 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=6.490;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.060;QD=23.01;ReadPosRankSum=2.398;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3291,351,0 chrXI 597862 . C T 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.443;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.555;QD=21.88;ReadPosRankSum=1.682;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3052,318,0 chrXI 597866 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.00;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3047,321,0 chrXI 598496 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2961;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.853;QD=21.96;ReadPosRankSum=1.679;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4348,465,0 chrXI 598795 . A T 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=212;Dels=0.00;FS=7.373;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.789;QD=24.02;ReadPosRankSum=2.380;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:5093,529,0 chrXI 598922 . C G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.46;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3907,438,0 chrXI 599122 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.85;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2478,255,0 chrXI 599337 . T C 5309.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.7308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5309,579,0 chrXI 599535 . A G 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=236;Dels=0.00;FS=2.837;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.264;QD=22.95;ReadPosRankSum=2.429;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5416,609,0 chrXI 599658 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.11;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4134,441,0 chrXI 599778 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4017;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.34;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3851,394,0 chrXI 599836 . G T 2892 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.70;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2925,315,0 chrXI 599871 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2533,264,0 chrXI 599953 . C G 2589 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.89;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2622,276,0 chrXI 600024 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=105;Dels=0.00;FS=3.053;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.387;QD=21.88;ReadPosRankSum=1.665;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2330,255,0 chrXI 600099 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=9.0773;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2595,270,0 chrXI 600159 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.09;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3373,375,0 chrXI 600363 . G A 5859.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.6538;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.31;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5859,613,0 chrXI 600406 . T G 5691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=3.517;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.474;QD=22.95;ReadPosRankSum=1.718;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:1,244:248:99:5691,624,0 chrXI 600423 . G A 6193.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=2.6537;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.11;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6193,658,0 chrXI 600450 . A G 6264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=299;Dels=0.00;FS=2.805;HaplotypeScore=16.2475;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.077;QD=20.95;ReadPosRankSum=2.408;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:2,293:299:99:6264,687,0 chrXI 601065 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.409;QD=21.95;ReadPosRankSum=1.716;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4850,543,0 chrXI 601089 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.08;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4490,504,0 chrXI 601260 . G C 4265.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.83;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4265,456,0 chrXI 601632 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=3.603;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.585;QD=20.91;ReadPosRankSum=1.695;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2019,222,0 chrXI 602166 . T G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.78;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3370,360,0 chrXI 603232 . C G 2349 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:98:99:2382,255,0 chrXI 603765 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.71;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4126,438,0 chrXI 604212 . C T 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.372;QD=22.78;ReadPosRankSum=0.340;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2516,261,0 chrXI 604356 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=104;Dels=0.00;FS=11.083;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=-1.359;QD=22.88;ReadPosRankSum=2.933;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2413,267,0 chrXI 604816 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3954,412,0 chrXI 605062 . A G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=2.627;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.449;QD=22.01;ReadPosRankSum=2.415;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3114,333,0 chrXI 605622 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.6565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3419,357,0 chrXI 606047 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.67;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4515,481,0 chrXI 606185 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.82;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3906,417,0 chrXI 606902 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.25;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3271,360,0 chrXI 606908 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4569;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.947;QD=21.65;ReadPosRankSum=1.709;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3291,363,0 chrXI 607403 . T G 3127 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.05;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3160,345,0 chrXI 607676 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.030;QD=21.63;ReadPosRankSum=1.632;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3785,423,0 chrXI 608132 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8212;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.433;QD=23.78;ReadPosRankSum=1.689;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3804,408,0 chrXI 608429 . T C 2429 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.31;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2462,267,0 chrXI 608448 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.96;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2383,246,0 chrXI 608493 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.48;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2393,243,0 chrXI 608546 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2257,234,0 chrXI 608639 . A G 1022 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.28;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1055,114,0 chrXI 608641 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.17;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1030,108,0 chrXI 608711 . A T 863 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.05;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:896,93,0 chrXI 608840 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.88;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1483,156,0 chrXI 609095 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.8057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3360,354,0 chrXI 609137 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.89;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4181,442,0 chrXI 609362 . C T 6226.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.97;SB=-3.625e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6226,649,0 chrXI 609438 . A G 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=250;Dels=0.00;FS=7.914;HaplotypeScore=17.3832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.800;QD=19.67;ReadPosRankSum=3.804;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:5,244:250:99:4918,543,0 chrXI 609526 . C G 5206.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.0153;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.06;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5206,591,0 chrXI 609667 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.672;QD=24.73;ReadPosRankSum=1.712;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4303,459,0 chrXI 609738 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3631,396,0 chrXI 610106 . T C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.8011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.640;QD=22.31;ReadPosRankSum=1.681;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4573,510,0 chrXI 610214 . C T 4783.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.56;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4783,505,0 chrXI 610232 . A T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.42;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4820,522,0 chrXI 610295 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.25;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4365,457,0 chrXI 610394 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.12;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3976,435,0 chrXI 610451 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.61;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4109,427,0 chrXI 610473 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.78;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3713,393,0 chrXI 610521 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1110;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.19;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3822,400,0 chrXI 610937 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1517;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.60;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3266,348,0 chrXI 611187 . C G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.53;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3410,360,0 chrXI 611206 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.768;QD=20.74;ReadPosRankSum=1.680;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2833,306,0 chrXI 611219 . T C 2540 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.65;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2573,273,0 chrXI 611233 . T G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=2.983;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.809;QD=18.91;ReadPosRankSum=2.385;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2189,237,0 chrXI 611427 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.96;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2788,291,0 chrXI 611581 . C A 2600 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.01;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2633,291,0 chrXI 611629 . C G 2714 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.25;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2747,309,0 chrXI 611929 . G A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.65;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4484,466,0 chrXI 612127 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.35;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4121,441,0 chrXI 612138 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.7566;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.697;QD=21.82;ReadPosRankSum=1.619;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4014,395,0 chrXI 612307 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.1203;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.24;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2306,240,0 chrXI 612420 . T C 524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=6.690;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.660;QD=12.19;ReadPosRankSum=1.650;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:60:557,60,0 chrXI 612496 . T C 1001 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.24;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1034,111,0 chrXI 612505 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.98;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:952,102,0 chrXI 612508 . A G 897 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.50;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:930,102,0 chrXI 612630 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=26.51;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1995,213,0 chrXI 612875 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=1.514;QD=21.42;ReadPosRankSum=1.635;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3117,339,0 chrXI 612887 . C A 2989 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=23.54;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3022,315,0 chrXI 612914 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.59;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2602,282,0 chrXI 612940 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1835;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=0.542;QD=20.37;ReadPosRankSum=-0.701;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2722,282,0 chrXI 613340 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.706;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.117;QD=24.29;ReadPosRankSum=1.691;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4153,456,0 chrXI 613391 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=195;Dels=0.00;FS=9.097;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=1.408;QD=23.43;ReadPosRankSum=3.397;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:4,190:195:99:4568,504,0 chrXI 613535 . A G 5785.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.1781;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=24.72;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5785,619,0 chrXI 613583 . G A 4722.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=23.49;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4722,496,0 chrXI 613616 . A G 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-1.417;QD=18.59;ReadPosRankSum=2.421;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3174,360,0 chrXI 613619 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=17.45;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3051,339,0 chrXI 613649 . T A 610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=176;Dels=0.00;FS=6.080;HaplotypeScore=6.2017;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;MQRankSum=0.651;QD=3.47;ReadPosRankSum=1.669;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:69:643,69,0 chrXI 613652 . T A 527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=3.028;HaplotypeScore=7.7790;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;MQRankSum=-0.536;QD=2.91;ReadPosRankSum=2.409;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:60:560,60,0 chrXI 613790 . G A 850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.018;DP=172;Dels=0.02;FS=10.792;HaplotypeScore=432.1128;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=2.360;QD=4.94;ReadPosRankSum=2.273;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:30,139:169:92:883,92,0 chrXI 614125 . C A 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.33;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2780,303,0 chrXI 614193 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=23.51;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3761,388,0 chrXI 614248 . G A 102.26 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=124.3698;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=0.65;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:15:135,15,0 chrXI 614464 . A C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=3.580;HaplotypeScore=14.7407;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.157;QD=24.26;ReadPosRankSum=1.714;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4585,498,0 chrXI 614538 . T A 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.6767;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.129;QD=23.01;ReadPosRankSum=0.952;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4601,504,0 chrXI 614836 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=194;Dels=0.00;FS=8.795;HaplotypeScore=13.6369;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.197;QD=20.99;ReadPosRankSum=3.414;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,189:194:99:4073,453,0 chrXI 614931 . C T 5321.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.9077;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.63;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5321,571,0 chrXI 615148 . C T 5238.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.38;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5238,556,0 chrXI 615175 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.333;QD=22.43;ReadPosRankSum=1.667;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4799,516,0 chrXI 615234 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=195;Dels=0.00;FS=9.653;HaplotypeScore=16.0057;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.311;QD=21.26;ReadPosRankSum=2.705;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4145,448,0 chrXI 615345 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.99;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3055,348,0 chrXI 615433 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.82;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3606,387,0 chrXI 615559 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.84;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1126,120,0 chrXI 615578 . T C 1486 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.23;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1519,162,0 chrXI 615858 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.56;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2896,309,0 chrXI 615914 . G C 4467.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.6829;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.03;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4467,477,0 chrXI 616020 . C T 4650.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=25.98;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4650,487,0 chrXI 616059 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.98;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4447,477,0 chrXI 616170 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.52;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3315,378,0 chrXI 616176 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.54;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3033,336,0 chrXI 616203 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.210;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-0.584;QD=15.54;ReadPosRankSum=1.674;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2800,303,0 chrXI 616209 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.03;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2870,306,0 chrXI 616404 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.52;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3811,414,0 chrXI 616713 . T C 3137 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.07;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3170,351,0 chrXI 616902 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.319;QD=21.23;ReadPosRankSum=1.669;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2347,264,0 chrXI 616917 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.60;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2474,261,0 chrXI 617158 . T G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=167;Dels=0.00;FS=3.034;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.576;QD=22.70;ReadPosRankSum=2.405;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3791,414,0 chrXI 617495 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=7.721;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.122;QD=18.26;ReadPosRankSum=1.708;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2663,294,0 chrXI 617508 . A C 2246 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=18.41;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2279,252,0 chrXI 617524 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=17.83;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1852,207,0 chrXI 617543 . A T 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=81;Dels=0.00;FS=2.384;HaplotypeScore=9.4145;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-1.789;QD=12.72;ReadPosRankSum=3.598;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:99:1063,117,0 chrXI 617954 . A G 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.062;QD=23.19;ReadPosRankSum=1.658;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2190,240,0 chrXI 618498 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=23.77;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3447,372,0 chrXI 618779 . C A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=24.9700;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.88;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3633,376,0 chrXI 619007 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.14;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2732,300,0 chrXI 619045 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.1614;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.97;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3428,369,0 chrXI 619260 . A T 2738 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.60;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2771,288,0 chrXI 619469 . A C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.431;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.289;QD=21.58;ReadPosRankSum=1.692;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1889,201,0 chrXI 619475 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.85;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1760,192,0 chrXI 619794 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4462;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.35;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4140,436,0 chrXI 620047 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.35;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3069,330,0 chrXI 620113 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.239;QD=21.71;ReadPosRankSum=1.702;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2551,285,0 chrXI 620156 . A T 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=6.481;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.599;QD=19.27;ReadPosRankSum=2.381;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2095,216,0 chrXI 620157 . G C 1953 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.60;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1986,213,0 chrXI 620182 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.68;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2080,216,0 chrXI 620930 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.15;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2337,252,0 chrXI 620961 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.58;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2381,255,0 chrXI 620968 . C A 2363 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.40;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2396,255,0 chrXI 621046 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.46;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3013,327,0 chrXI 621343 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.21;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2787,294,0 chrXI 621359 . A T 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.416;QD=20.99;ReadPosRankSum=2.353;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2699,279,0 chrXI 621586 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.84;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2394,261,0 chrXI 621589 . T A 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.284;QD=20.75;ReadPosRankSum=1.619;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2564,264,0 chrXI 621619 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4703;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.99;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2634,279,0 chrXI 621820 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=25.36;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3626,382,0 chrXI 622408 . C G 2984 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.29;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3017,321,0 chrXI 622853 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3170,336,0 chrXI 623020 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3345,363,0 chrXI 623292 . T A 2808 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2841,291,0 chrXI 623581 . A T 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=3.211;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.883;QD=24.95;ReadPosRankSum=1.620;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3867,408,0 chrXI 623815 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=132;Dels=0.00;FS=6.535;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.554;QD=22.23;ReadPosRankSum=2.412;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2968,321,0 chrXI 624088 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.15;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3744,396,0 chrXI 624190 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3004,315,0 chrXI 624268 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.24;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2724,288,0 chrXI 624424 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=112;Dels=0.00;FS=6.140;HaplotypeScore=8.9012;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.604;QD=24.11;ReadPosRankSum=2.865;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2733,300,0 chrXI 624645 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.81;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3196,342,0 chrXI 624652 . A G 2965 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.64;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2998,318,0 chrXI 624661 . A G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.861;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.457;QD=17.52;ReadPosRankSum=1.690;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2888,312,0 chrXI 624667 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=16.56;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2881,309,0 chrXI 624837 . G C 4318.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.55;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4318,465,0 chrXI 624919 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.66;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3575,384,0 chrXI 625172 . A G 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.168;HaplotypeScore=10.3803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.036;QD=22.25;ReadPosRankSum=1.686;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4984,567,0 chrXI 625684 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.60;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3468,361,0 chrXI 626281 . T A 2602 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=59.6086;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.87;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2635,279,0 chrXI 627014 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.42;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3355,357,0 chrXI 627386 . C A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.42;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3541,364,0 chrXI 627504 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=163;Dels=0.00;FS=11.200;HaplotypeScore=152.5077;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=-2.700;QD=13.45;ReadPosRankSum=3.200;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:5,158:163:99:2226,235,0 chrXI 627507 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=2.930;HaplotypeScore=153.5652;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-1.692;QD=13.35;ReadPosRankSum=2.419;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2155,252,0 chrXI 627536 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=12.54;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1676,183,0 chrXI 627879 . A T 3181 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.39;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3214,336,0 chrXI 627998 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3623,387,0 chrXI 628100 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.575;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.465;QD=24.93;ReadPosRankSum=1.676;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3124,336,0 chrXI 628202 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2913,306,0 chrXI 628397 . C G 2696 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.73;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2729,306,0 chrXI 628658 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=26.16;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4474,469,0 chrXI 628847 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=7.410;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=-1.086;QD=20.43;ReadPosRankSum=2.421;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3554,384,0 chrXI 628859 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=20.52;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3529,369,0 chrXI 628874 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=7.434;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;MQRankSum=-1.103;QD=18.42;ReadPosRankSum=2.387;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2925,318,0 chrXI 628888 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=18.39;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2663,279,0 chrXI 628896 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=17.83;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2565,270,0 chrXI 628913 . T A 2642 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4858;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=18.61;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2675,279,0 chrXI 629063 . T C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=136;Dels=0.00;FS=10.139;HaplotypeScore=9.5060;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.948;QD=22.41;ReadPosRankSum=2.252;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3081,325,0 chrXI 629129 . C A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=25.02;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3260,337,0 chrXI 629639 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.689;QD=24.05;ReadPosRankSum=0.161;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3944,429,0 chrXI 629750 . G A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4510,481,0 chrXI 629864 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=158;Dels=0.00;FS=2.631;HaplotypeScore=18.7715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.423;QD=21.94;ReadPosRankSum=2.322;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,152:158:99:3466,384,0 chrXI 629976 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4246,442,0 chrXI 630120 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.10;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4481,475,0 chrXI 630391 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.33;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2594,285,0 chrXI 630667 . G C 3158 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.74;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3191,342,0 chrXI 631029 . C G 1864 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;QD=23.01;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1897,207,0 chrXI 631523 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=208;Dels=0.00;FS=2.987;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.255;QD=19.63;ReadPosRankSum=2.414;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4083,459,0 chrXI 631526 . A T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.07;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4319,451,0 chrXI 631559 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.45;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4183,445,0 chrXI 632031 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.776;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.997;QD=22.34;ReadPosRankSum=1.715;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4445,474,0 chrXI 632039 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.16;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4588,487,0 chrXI 632117 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=191;Dels=0.00;FS=3.033;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.627;QD=22.17;ReadPosRankSum=2.385;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4234,474,0 chrXI 632408 . G A 6823.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=17.4056;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.63;SB=-3.664e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6823,736,0 chrXI 632654 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.0123;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.07;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4199,447,0 chrXI 632847 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;DP=50;Dels=0.00;FS=25.400;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=0;MQRankSum=-0.037;QD=0.26;ReadPosRankSum=-4.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,17:50:43:43,0,256 chrXI 632869 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.84;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:90:791,90,0 chrXI 632920 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=26.16;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1995,204,0 chrXI 632929 . A G 1704 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.67;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1737,192,0 chrXI 633272 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=2.968;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.302;QD=22.01;ReadPosRankSum=2.361;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3698,417,0 chrXI 633329 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.90;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3441,355,0 chrXI 633545 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.5972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.68;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2661,282,0 chrXI 633641 . T A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.37;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3425,360,0 chrXI 633794 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.197;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.306;QD=23.24;ReadPosRankSum=1.703;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2822,303,0 chrXI 633878 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.92;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4497,486,0 chrXI 634418 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.78;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4124,433,0 chrXI 634424 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.605;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.450;QD=22.26;ReadPosRankSum=1.692;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3828,405,0 chrXI 634880 . G C 5289.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.60;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5289,568,0 chrXI 635532 . A G 273 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.06;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:33:306,33,0 chrXI 636649 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.36;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4579,478,0 chrXI 636832 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.68;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4349,454,0 chrXI 636838 . A C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=222;Dels=0.00;FS=6.067;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.142;QD=18.67;ReadPosRankSum=2.940;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:3,216:222:99:4145,447,0 chrXI 637026 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.36;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4895,523,0 chrXI 637305 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3844,403,0 chrXI 637350 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3885,420,0 chrXI 637392 . G C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.74;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,140:145:99:3297,369,0 chrXI 638131 . C T 6202.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.91;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6202,649,0 chrXI 638438 . C T 88.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;DP=106;Dels=0.00;FS=73.814;HaplotypeScore=15.2561;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=0.105;QD=0.83;ReadPosRankSum=-5.282;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:66,38:106:99:118,0,375 chrXI 638618 . T G 1999 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.99;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2032,222,0 chrXI 639032 . A T 2828 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.97;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2861,300,0 chrXI 639090 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.18;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4014,429,0 chrXI 639099 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.19;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4089,435,0 chrXI 639300 . A C 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.375;QD=22.67;ReadPosRankSum=1.679;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4465,475,0 chrXI 639414 . G C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.79;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4164,438,0 chrXI 640812 . T C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=4.305;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.768;QD=23.58;ReadPosRankSum=1.696;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2367,255,0 chrXI 641049 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.489;QD=24.45;ReadPosRankSum=1.703;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2894,318,0 chrXI 641098 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.963;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.150;QD=25.28;ReadPosRankSum=2.370;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3142,333,0 chrXI 641599 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.88;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2673,276,0 chrXI 641793 . C A 2616 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.16;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2649,276,0 chrXI 642011 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1997,210,0 chrXI 642681 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.10;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1931,213,0 chrXI 643662 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1845,198,0 chrXI 643806 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.65;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2350,252,0 chrXI 643961 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2479,273,0 chrXI 644027 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2595,273,0 chrXI 644496 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.285;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.608;QD=22.40;ReadPosRankSum=1.679;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4412,507,0 chrXI 645006 . A T 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.915;QD=25.32;ReadPosRankSum=1.699;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2717,294,0 chrXI 645591 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.79;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3031,318,0 chrXI 645733 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3295,357,0 chrXI 646526 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.3663;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.82;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3822,402,0 chrXI 646677 . C A 4779.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.26;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4779,502,0 chrXI 647059 . G T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.03;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5297,553,0 chrXI 647912 . T A 489 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=12;MQRankSum=0.160;QD=5.56;ReadPosRankSum=2.908;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:3,85:88:57:522,57,0 chrXI 647954 . C T 1061 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=10;QD=6.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,163:173:99:1094,132,0 chrXI 647987 . C T 2395 filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=0;QD=11.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2428,273,0 chrXI 648533 . G A 4895.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.57;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4895,528,0 chrXI 648651 . A T 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=195;Dels=0.00;FS=3.030;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.838;QD=24.42;ReadPosRankSum=2.387;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4761,496,0 chrXI 660077 . A C 47.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.32;MQ0=27;QD=1.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:9:80,9,0 chrXI 660644 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.31;MQ0=8;QD=4.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:82,9,0 chrXI 660936 . T G 43.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=4;QD=6.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:9:76,9,0 chrXI 661005 . T C 468 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=8;QD=18.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:501,54,0 chrXI 661167 . C T 853 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=6;QD=19.84;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:886,93,0 chrXI 661199 . A G 837 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=4;QD=19.02;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:870,99,0 chrXI 661416 . G A 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DP=47;Dels=0.02;FS=20.164;HaplotypeScore=11.0087;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=6;MQRankSum=2.493;QD=3.57;ReadPosRankSum=-4.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,18:46:99:198,0,228 chrXI 661514 . C T 85.51 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=15;QD=3.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:12:118,12,0 chrXI 663149 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=3.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrXI 663228 . T C 1287 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=3;QD=21.10;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1320,147,0 chrXI 663398 . C G 1792 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=2;QD=23.58;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1825,198,0 chrXI 663545 . A G 527 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=5;QD=15.97;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,32:33:60:560,60,0 chrXI 665716 . A G 538.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.56;MQ0=9;MQRankSum=0.091;QD=9.78;ReadPosRankSum=0.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,32:55:99:568,0,285 chrXI 665976 . G T 42.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9894;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=0;MQRankSum=0.922;QD=5.28;ReadPosRankSum=2.017;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:4,4:8:10:72,0,10 chrXI 665979 . T A 42.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DP=11;Dels=0.00;FS=3.522;HaplotypeScore=4.8043;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=1;MQRankSum=0.103;QD=3.83;ReadPosRankSum=1.453;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:5,6:11:12:72,0,12 chrXI 665996 . A G 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;DP=37;Dels=0.00;FS=14.393;HaplotypeScore=3.0340;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=15;MQRankSum=1.399;QD=3.00;ReadPosRankSum=1.604;SB=-8.404e+01 GT:AD:DP:GQ:PL 0/1:20,17:37:43:141,0,43 chrXI 666019 . T C 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.231;DP=86;Dels=0.00;FS=10.779;HaplotypeScore=13.1174;MLEAC=1;MLEAF=0.500;MQ=17.09;MQ0=37;MQRankSum=3.528;QD=2.51;ReadPosRankSum=-0.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,27:86:99:246,0,156 chrXI 666054 . A T 343.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;DP=112;Dels=0.00;FS=17.237;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.500;MQ=17.91;MQ0=51;MQRankSum=3.756;QD=3.06;ReadPosRankSum=1.295;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:68,44:112:67:373,0,67 chrXI 666055 . T G 343.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.142;DP=113;Dels=0.00;FS=17.237;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.500;MQ=17.83;MQ0=52;MQRankSum=3.772;QD=3.04;ReadPosRankSum=1.198;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:69,44:113:68:373,0,68 chrXI 666062 . G A 364.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.104;DP=113;Dels=0.00;FS=18.763;HaplotypeScore=7.1186;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=53;MQRankSum=3.295;QD=3.22;ReadPosRankSum=2.322;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:67,46:113:41:394,0,41 chrXI 666063 . A G 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;DP=113;Dels=0.00;FS=18.763;HaplotypeScore=7.1186;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=53;MQRankSum=-3.278;QD=0.11;ReadPosRankSum=-2.322;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:46,66:113:42:42,0,393 chrXI 666072 . C G 367.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DP=118;Dels=0.00;FS=6.495;HaplotypeScore=5.2266;MLEAC=1;MLEAF=0.500;MQ=16.96;MQ0=59;MQRankSum=4.065;QD=3.11;ReadPosRankSum=2.480;SB=-3.044e+00 GT:AD:DP:GQ:PL 0/1:71,46:118:19:397,0,19 chrXI 666117 . A G 74.55 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=15.2026;MLEAC=1;MLEAF=0.500;MQ=13.10;MQ0=50;QD=0.93;SB=6.44 GT:AD:DP:GQ:PL 1/1:0,73:80:12:107,12,0 chrXI 666198 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=3;QD=21.48;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1601,174,0 chrXI 666271 . G A 526.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.769;DP=96;Dels=0.00;FS=11.437;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=52;MQRankSum=4.989;QD=5.48;ReadPosRankSum=-2.940;SB=-1.286e+02 GT:AD:DP:GQ:PL 1/1:68,28:96:21:559,21,0 chrXI 666298 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.5712;MLEAC=2;MLEAF=1.00;MQ=7.31;MQ0=51;MQRankSum=2.353;QD=0.27;ReadPosRankSum=-1.119;SB=1.28 GT:AD:DP:GQ:PL 1/1:62,9:71:6:50,6,0 chrXI 666300 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.972;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.5377;MLEAC=2;MLEAF=1.00;MQ=7.39;MQ0=49;MQRankSum=2.409;QD=0.28;ReadPosRankSum=-0.549;SB=1.27 GT:AD:DP:GQ:PL 1/1:61,7:68:6:50,6,0 chrXI 666303 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=11.1654;MLEAC=2;MLEAF=1.00;MQ=6.96;MQ0=47;MQRankSum=2.646;QD=0.31;ReadPosRankSum=-1.491;SB=1.28 GT:AD:DP:GQ:PL 1/1:55,9:64:6:51,6,0 chrXI 666304 . C G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.011;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=12.2184;MLEAC=2;MLEAF=1.00;MQ=7.83;MQ0=46;MQRankSum=2.540;QD=0.27;ReadPosRankSum=-1.059;SB=1.32 GT:AD:DP:GQ:PL 1/1:55,7:63:6:48,6,0 chrXI 666338 . G A 35.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=31;Dels=0.00;FS=2.696;HaplotypeScore=18.4412;MLEAC=1;MLEAF=0.500;MQ=17.99;MQ0=8;MQRankSum=1.506;QD=1.13;ReadPosRankSum=1.415;SB=-7.075e+00 GT:AD:DP:GQ:PL 0/1:25,6:31:15:65,0,15 chrXI 666462 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=13.3887;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=0;MQRankSum=0.278;QD=3.00;ReadPosRankSum=2.520;SB=-2.497e+01 GT:AD:DP:GQ:PL 1/1:7,4:11:9:65,9,0 chrXI 666468 . A G 60.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=0;MQRankSum=0.922;QD=8.64;ReadPosRankSum=0.198;SB=-5.144e+01 GT:AD:DP:GQ:PL 1/1:2,5:7:12:93,12,0 chrXI 666488 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.164;DP=15;Dels=0.00;FS=6.166;HaplotypeScore=16.4619;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=0;MQRankSum=0.919;QD=2.53;ReadPosRankSum=1.164;SB=-4.521e+01 GT:AD:DP:GQ:PL 1/1:10,5:15:9:70,9,0 chrXI 666505 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=19.5427;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=0.949;QD=0.99;ReadPosRankSum=1.608;SB=1.24 GT:AD:DP:GQ:PL 1/1:6,14:20:6:51,6,0 chrXI 666511 . G T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=18.5520;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=0;MQRankSum=1.361;QD=1.04;ReadPosRankSum=2.928;SB=1.24 GT:AD:DP:GQ:PL 1/1:7,14:21:6:53,6,0 chrXI 666512 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=15.8652;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=0;MQRankSum=0.667;QD=1.04;ReadPosRankSum=1.867;SB=1.26 GT:AD:DP:GQ:PL 1/1:6,9:21:6:53,6,0 chrXI 666513 . G A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.507;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.6786;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=1.823;QD=0.95;ReadPosRankSum=3.039;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,9:22:6:52,6,0 chrXI 666515 . T G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=27.8922;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=1.386;QD=0.63;ReadPosRankSum=3.376;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,9:22:6:45,6,0 chrXI 666516 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.5468;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=0;MQRankSum=0.884;QD=1.11;ReadPosRankSum=2.298;SB=1.24 GT:AD:DP:GQ:PL 1/1:7,9:16:6:49,6,0 chrXI 666522 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.8135;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;QD=0.88;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:55,6,0 chrXI 666535 . A G 69.51 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=11.8177;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=0;QD=2.32;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:102,12,0 chrXI 666538 . A G 29.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=11.8177;MLEAC=1;MLEAF=0.500;MQ=25.69;MQ0=0;MQRankSum=-0.556;QD=0.97;ReadPosRankSum=-1.057;SB=-5.728e-02 GT:AD:DP:GQ:PL 0/1:5,25:30:16:59,0,16 chrXI 666561 . A C 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=134.0141;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-1.529;QD=0.42;ReadPosRankSum=1.336;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:30,16:62:56:56,0,60 chrXI 666565 . G A,T 83.07 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.053;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=78.4731;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.17;MQ0=0;MQRankSum=0.833;QD=1.30;ReadPosRankSum=4.626;SB=29.93 GT:AD:DP:GQ:PL 1/2:21,16,26:64:49:143,78,88,49,0,56 chrXI 666566 . T A,G 122.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.476;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=58.1220;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.06;MQ0=0;MQRankSum=1.851;QD=1.88;ReadPosRankSum=1.976;SB=-1.381e-02 GT:AD:DP:GQ:PL 1/2:5,18,42:65:55:182,112,103,70,0,55 chrXI 666575 . T A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=107.0002;MLEAC=1;MLEAF=0.500;MQ=24.77;MQ0=0;MQRankSum=-0.042;QD=0.28;ReadPosRankSum=2.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,16:60:47:47,0,143 chrXI 666577 . C G 71.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=78.0740;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=0;MQRankSum=-0.931;QD=1.54;ReadPosRankSum=2.049;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:12,29:46:53:101,0,53 chrXI 666578 . A G 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=81.0097;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=0;MQRankSum=-0.593;QD=1.24;ReadPosRankSum=1.999;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,23:46:74:87,0,74 chrXI 666584 . G A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=101.4381;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=0;MQRankSum=-1.205;QD=0.42;ReadPosRankSum=1.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,16:49:51:51,0,128 chrXI 666590 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=69.8653;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=1;MQRankSum=-0.344;QD=0.29;ReadPosRankSum=1.653;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:18,17:43:37:42,0,37 chrXI 666683 . T G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;DP=90;Dels=0.02;FS=45.396;HaplotypeScore=74.8652;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=9;MQRankSum=-2.994;QD=1.12;ReadPosRankSum=-2.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,22:88:99:131,0,109 chrXI 666812 . T G 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=98;Dels=0.02;FS=16.594;HaplotypeScore=55.0546;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=16;MQRankSum=1.884;QD=2.01;ReadPosRankSum=1.781;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:62,30:96:99:227,0,373 chrXI 666814 . T G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=48.4141;MLEAC=1;MLEAF=0.500;MQ=18.17;MQ0=13;MQRankSum=-1.314;QD=0.81;ReadPosRankSum=1.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,18:71:88:88,0,373 chrXII 86 . C T 207.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;DP=40;Dels=0.00;FS=1.341;HaplotypeScore=11.7036;MLEAC=1;MLEAF=0.500;MQ=30.41;MQ0=3;MQRankSum=-0.239;QD=5.18;ReadPosRankSum=-1.002;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:14,26:40:19:237,0,19 chrXII 107 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=56;Dels=0.00;FS=3.965;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=15;MQRankSum=-0.468;QD=0.48;ReadPosRankSum=-3.240;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,7:56:57:57,0,302 chrXII 108 . A T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;DP=60;Dels=0.02;FS=5.139;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=15;MQRankSum=-0.398;QD=0.60;ReadPosRankSum=-3.734;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:47,12:59:66:66,0,283 chrXII 125 . G T 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=95;Dels=0.01;FS=2.087;HaplotypeScore=40.7286;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=20;MQRankSum=0.707;QD=1.82;ReadPosRankSum=3.866;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:61,33:94:99:203,0,648 chrXII 161 . T C 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;DP=167;Dels=0.00;FS=32.521;HaplotypeScore=4.9835;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=77;MQRankSum=-2.531;QD=0.43;ReadPosRankSum=2.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,27:167:99:102,0,1210 chrXII 267 . G C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.51;MQ0=48;MQRankSum=-0.831;QD=1.87;ReadPosRankSum=1.635;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,13:60:82:142,0,82 chrXII 305 . A G 265.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=18.80;MQ0=41;MQRankSum=0.866;QD=3.40;ReadPosRankSum=-1.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,23:78:99:295,0,244 chrXII 1888 . T C 140.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.89;MQ0=59;QD=1.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:49,25:76:24:173,24,0 chrXII 1894 . C T 119.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.03;MQ0=39;QD=2.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,20:56:21:152,21,0 chrXII 1898 . A G 140.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.30;MQ0=17;QD=4.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,19:34:24:173,24,0 chrXII 1905 . A G 140.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.21;MQ0=2;QD=14.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:24:173,24,0 chrXII 1966 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.27;MQ0=103;QD=0.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:103,5:108:9:65,9,0 chrXII 1990 . G C 32.97 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.14;MQ0=115;QD=0.26;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:115,11:126:9:65,9,0 chrXII 1992 . C G 32.97 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.13;MQ0=116;QD=0.26;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:116,11:127:9:65,9,0 chrXII 2004 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.36;MQ0=117;QD=0.26;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:117,12:129:9:65,9,0 chrXII 2005 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.38;MQ0=116;QD=0.26;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:116,12:128:9:65,9,0 chrXII 2007 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.39;MQ0=115;QD=0.26;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:115,12:127:9:65,9,0 chrXII 2011 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.60;MQ0=104;QD=0.28;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:104,12:116:9:65,9,0 chrXII 2026 . G C 32.97 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.40;MQ0=72;QD=0.39;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:72,11:83:9:65,9,0 chrXII 2028 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.40;MQ0=72;QD=0.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:72,12:84:9:65,9,0 chrXII 2098 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.12;MQ0=253;QD=0.05;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:249,5:258:6:43,6,0 chrXII 2100 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.09;MQ0=259;QD=0.05;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:258,5:264:6:43,6,0 chrXII 2112 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.91;MQ0=312;QD=0.04;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:306,5:317:6:43,6,0 chrXII 2113 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.89;MQ0=318;QD=0.04;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:313,5:323:6:43,6,0 chrXII 2115 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.84;MQ0=335;QD=0.04;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:330,6:340:6:43,6,0 chrXII 2119 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.81;MQ0=348;QD=0.03;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:348,5:353:6:43,6,0 chrXII 5430 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=12;QD=1.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,13:15:6:53,6,0 chrXII 5741 . T C 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=5;MQRankSum=0.401;QD=2.72;ReadPosRankSum=0.935;SB=-2.785e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:81,9,0 chrXII 5757 . A T 19.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=4;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.109;SB=-2.904e+01 GT:AD:DP:GQ:PL 0/1:7,11:18:18:49,0,18 chrXII 10965 . T C 214.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=20.32;MQ0=13;MQRankSum=1.085;QD=7.38;ReadPosRankSum=1.519;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,27:29:27:247,27,0 chrXII 11181 . C A 680.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.560;DP=130;Dels=0.00;FS=3.433;HaplotypeScore=10.4973;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=56;MQRankSum=-1.143;QD=5.23;ReadPosRankSum=2.137;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:57,73:130:99:710,0,238 chrXII 11182 . A G 660.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;DP=128;Dels=0.01;FS=3.377;HaplotypeScore=13.4428;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=54;MQRankSum=-1.215;QD=5.16;ReadPosRankSum=1.838;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:54,73:127:99:690,0,276 chrXII 11192 . A G 710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DP=128;Dels=0.01;FS=4.900;HaplotypeScore=46.3132;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=52;MQRankSum=-1.098;QD=5.55;ReadPosRankSum=0.767;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:56,71:127:99:740,0,288 chrXII 11325 . C A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DP=117;Dels=0.04;FS=0.000;HaplotypeScore=80.5292;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=36;MQRankSum=-1.165;QD=0.11;ReadPosRankSum=-0.014;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:94,18:112:43:43,0,237 chrXII 11448 . T C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.709;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=8.3710;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=8;MQRankSum=-0.142;QD=0.92;ReadPosRankSum=0.425;SB=-2.671e+01 GT:AD:DP:GQ:PL 1/1:8,20:28:6:57,6,0 chrXII 11456 . C T 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=11.3688;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=8;MQRankSum=0.680;QD=0.58;ReadPosRankSum=0.793;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:11,13:24:6:45,6,0 chrXII 11457 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.942;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=11.3688;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=7;MQRankSum=0.538;QD=0.69;ReadPosRankSum=1.211;SB=-2.664e+01 GT:AD:DP:GQ:PL 1/1:8,15:23:6:47,6,0 chrXII 11458 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=10.4529;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=7;QD=0.86;SB=-2.976e+01 GT:AD:DP:GQ:PL 1/1:3,18:23:6:51,6,0 chrXII 11503 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.122;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=21.2091;MLEAC=2;MLEAF=1.00;MQ=21.25;MQ0=2;MQRankSum=-0.939;QD=0.85;ReadPosRankSum=-0.694;SB=-6.476e+01 GT:AD:DP:GQ:PL 1/1:11,10:21:6:49,6,0 chrXII 11614 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.639;DP=29;Dels=0.00;FS=19.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=15;MQRankSum=0.091;QD=0.65;ReadPosRankSum=0.822;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:17,12:29:6:50,6,0 chrXII 11618 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=11;QD=0.95;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:6:55,6,0 chrXII 11619 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=12;QD=0.84;SB=-2.976e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:6:53,6,0 chrXII 11626 . G A 66.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=32;Dels=0.00;FS=6.767;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=13;MQRankSum=1.552;QD=2.08;ReadPosRankSum=0.456;SB=-7.251e+01 GT:AD:DP:GQ:PL 1/1:12,20:32:12:99,12,0 chrXII 11652 . T C 130.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;DP=60;Dels=0.00;FS=7.363;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=18;MQRankSum=1.152;QD=2.17;ReadPosRankSum=0.207;SB=-7.207e+01 GT:AD:DP:GQ:PL 1/1:13,47:60:21:163,21,0 chrXII 11666 . T C 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DP=67;Dels=0.00;FS=1.427;HaplotypeScore=10.6521;MLEAC=1;MLEAF=0.500;MQ=17.18;MQ0=18;MQRankSum=-3.868;QD=1.66;ReadPosRankSum=0.462;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:45,22:67:44:141,0,44 chrXII 11683 . A G 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=17.40;MQ0=11;MQRankSum=3.889;QD=0.30;ReadPosRankSum=-3.135;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:31,26:57:47:47,0,127 chrXII 11686 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=17.01;MQ0=10;MQRankSum=3.518;QD=0.40;ReadPosRankSum=-2.496;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:30,23:53:51:51,0,122 chrXII 11687 . T C 222 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.685;DP=53;Dels=0.00;FS=6.792;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=10;MQRankSum=0.846;QD=4.19;ReadPosRankSum=1.088;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:8,45:53:33:255,33,0 chrXII 11692 . T C 276 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;DP=52;Dels=0.00;FS=5.295;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=8;MQRankSum=0.866;QD=5.31;ReadPosRankSum=1.024;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:6,46:52:39:309,39,0 chrXII 11717 . T C 150.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.17;MQ0=25;MQRankSum=1.223;QD=2.54;ReadPosRankSum=-0.204;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:22,37:59:24:183,24,0 chrXII 11846 . T C 242.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.43;MQ0=37;MQRankSum=3.855;QD=3.15;ReadPosRankSum=3.576;SB=-7.927e-01 GT:AD:DP:GQ:PL 0/1:18,59:77:4:272,0,4 chrXII 11874 . T C 241 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=34;QD=3.35;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,69:72:30:274,30,0 chrXII 13561 . T G 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.869;DP=140;Dels=0.00;FS=63.692;HaplotypeScore=9.0667;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=104;MQRankSum=3.823;QD=0.67;ReadPosRankSum=-2.119;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:77,20:140:15:126,15,0 chrXII 13565 . A G 146.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.409;DP=142;Dels=0.00;FS=98.638;HaplotypeScore=9.8006;MLEAC=2;MLEAF=1.00;MQ=10.14;MQ0=106;MQRankSum=5.078;QD=1.03;ReadPosRankSum=-1.512;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:119,23:142:21:179,21,0 chrXII 13593 . C T 196.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.704;DP=108;Dels=0.00;FS=71.683;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.47;MQ0=77;MQRankSum=4.386;QD=1.82;ReadPosRankSum=2.005;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:84,24:108:24:229,24,0 chrXII 13605 . A T 198.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.460;DP=100;Dels=0.00;FS=56.469;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=71;MQRankSum=4.276;QD=1.98;ReadPosRankSum=2.916;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:79,21:100:24:231,24,0 chrXII 13651 . T A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.61;MQ0=29;MQRankSum=1.370;QD=0.51;ReadPosRankSum=-2.599;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,19:49:55:55,0,164 chrXII 13683 . G A 295 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=18;QD=5.78;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:36:328,36,0 chrXII 13693 . C G 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=16.65;MQ0=20;MQRankSum=0.226;QD=0.95;ReadPosRankSum=-2.943;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,32:62:89:89,0,252 chrXII 13698 . G A 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=16.61;MQ0=21;MQRankSum=0.353;QD=0.98;ReadPosRankSum=-1.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,32:62:91:91,0,255 chrXII 13699 . T C 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=16.47;MQ0=21;MQRankSum=0.743;QD=0.92;ReadPosRankSum=-1.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,32:63:88:88,0,255 chrXII 13715 . T C 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;DP=71;Dels=0.00;FS=5.170;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.64;MQ0=21;MQRankSum=0.054;QD=2.89;ReadPosRankSum=0.421;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:23,48:71:99:235,0,214 chrXII 13719 . T A 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756;DP=72;Dels=0.00;FS=4.976;HaplotypeScore=9.4740;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=21;MQRankSum=0.270;QD=2.31;ReadPosRankSum=-1.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,22:72:99:196,0,219 chrXII 13727 . A G 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DP=79;Dels=0.00;FS=54.028;HaplotypeScore=11.9926;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=19;MQRankSum=-3.058;QD=0.71;ReadPosRankSum=5.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,31:79:86:86,0,501 chrXII 13730 . C T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.830;DP=81;Dels=0.00;FS=63.337;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=16;MQRankSum=-2.410;QD=0.77;ReadPosRankSum=4.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,35:81:92:92,0,454 chrXII 13757 . G A 332.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DP=80;Dels=0.00;FS=102.944;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=12;MQRankSum=3.441;QD=4.15;ReadPosRankSum=5.486;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:55,25:80:99:362,0,199 chrXII 13762 . G T 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DP=76;Dels=0.00;FS=89.450;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=11;MQRankSum=-2.250;QD=0.66;ReadPosRankSum=-4.968;SB=0.101 GT:AD:DP:GQ:PL 0/1:34,42:76:80:80,0,413 chrXII 13765 . A T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;DP=73;Dels=0.00;FS=90.473;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=11;MQRankSum=-1.763;QD=0.71;ReadPosRankSum=-5.159;SB=0.528 GT:AD:DP:GQ:PL 0/1:33,40:73:82:82,0,421 chrXII 13782 . G A 347.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DP=63;Dels=0.00;FS=86.694;HaplotypeScore=2.5160;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=8;MQRankSum=1.522;QD=5.52;ReadPosRankSum=0.770;SB=-3.530e+00 GT:AD:DP:GQ:PL 0/1:35,27:63:6:377,0,6 chrXII 13790 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.522;DP=53;Dels=0.00;FS=50.716;HaplotypeScore=1.7273;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=6;MQRankSum=-1.224;QD=0.23;ReadPosRankSum=2.522;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:28,25:53:42:42,0,415 chrXII 13818 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;DP=44;Dels=0.00;FS=46.685;HaplotypeScore=22.7106;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=5;MQRankSum=1.077;QD=0.59;ReadPosRankSum=0.889;SB=1.27 GT:AD:DP:GQ:PL 1/1:16,28:44:6:57,6,0 chrXII 13824 . T G 169.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.976;DP=54;Dels=0.00;FS=68.255;HaplotypeScore=9.1536;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=8;MQRankSum=4.067;QD=3.13;ReadPosRankSum=1.254;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:13,41:54:24:202,24,0 chrXII 13825 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;DP=56;Dels=0.00;FS=2.685;HaplotypeScore=9.1536;MLEAC=1;MLEAF=0.500;MQ=23.86;MQ0=9;MQRankSum=-0.210;QD=0.48;ReadPosRankSum=3.031;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:51,5:56:57:57,0,135 chrXII 13885 . T C 611.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;DP=105;Dels=0.00;FS=52.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=12;MQRankSum=3.332;QD=5.82;ReadPosRankSum=-3.037;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:37,68:105:99:641,0,131 chrXII 13886 . A T 608.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=106;Dels=0.00;FS=49.367;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=12;MQRankSum=3.277;QD=5.74;ReadPosRankSum=-2.875;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:37,69:106:99:638,0,135 chrXII 13896 . C T 779.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;DP=119;Dels=0.00;FS=42.020;HaplotypeScore=7.0553;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=12;MQRankSum=3.670;QD=6.55;ReadPosRankSum=0.026;SB=-4.730e+02 GT:AD:DP:GQ:PL 0/1:37,82:119:99:809,0,112 chrXII 13905 . T C 917.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=118;Dels=0.00;FS=29.236;HaplotypeScore=10.5892;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=10;MQRankSum=3.066;QD=7.77;ReadPosRankSum=0.644;SB=-5.520e+02 GT:AD:DP:GQ:PL 0/1:31,87:118:92:947,0,92 chrXII 13986 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=12.8043;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=23.65;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2185,228,0 chrXII 14175 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.031;QD=22.27;ReadPosRankSum=2.409;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2728,300,0 chrXII 14318 . C T 237 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=55.5221;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=2.86;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:30:270,30,0 chrXII 14484 . G C 1283 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.21;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1316,141,0 chrXII 14795 . C A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0906;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.33;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4053,415,0 chrXII 14872 . T A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4372,463,0 chrXII 15147 . T G 5340.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.2101;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.52;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5340,571,0 chrXII 15630 . G A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.1369;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.28;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5334,550,0 chrXII 15842 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.436;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.340;QD=20.71;ReadPosRankSum=1.716;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4473,489,0 chrXII 16036 . T G 4404.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4639;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.33;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4404,477,0 chrXII 16109 . G A 4755.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.89;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4755,505,0 chrXII 16137 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=7.795;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.050;QD=23.01;ReadPosRankSum=2.378;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3958,420,0 chrXII 18624 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1587,171,0 chrXII 18699 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.68;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2822,300,0 chrXII 19080 . C T 6492.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.8795;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.41;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6492,682,0 chrXII 19191 . T A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.8385;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.95;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4588,487,0 chrXII 19236 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=198;Dels=0.00;FS=8.716;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.138;QD=21.16;ReadPosRankSum=3.415;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:4,192:198:99:4189,462,0 chrXII 19419 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.0042;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.08;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3599,393,0 chrXII 19593 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.34;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2222,234,0 chrXII 19608 . G C 2154 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.21;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2187,234,0 chrXII 19788 . A G 801 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.25;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:834,90,0 chrXII 19819 . T G 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=1.238;QD=20.74;ReadPosRankSum=1.650;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:904,99,0 chrXII 19832 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.47;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1224,132,0 chrXII 19877 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=21.55;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1132,123,0 chrXII 19889 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=20.68;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:881,96,0 chrXII 19910 . A T 821 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=17.10;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:854,99,0 chrXII 19941 . A C 573 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=16.37;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:66:606,66,0 chrXII 20003 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=22.22;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2411,252,0 chrXII 20019 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=20.55;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2499,270,0 chrXII 20041 . A C 1939 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=17.79;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1972,210,0 chrXII 20097 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;QD=11.51;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1242,138,0 chrXII 20103 . G C 1035 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=10.45;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1068,126,0 chrXII 20108 . G C 1089 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=11.97;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1122,129,0 chrXII 20109 . C T 1081 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=11.88;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1114,129,0 chrXII 20114 . C T 1092 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=87.9522;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=10.71;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1125,132,0 chrXII 20157 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=18.06;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2218,234,0 chrXII 20163 . A G 2126 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=16.23;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2159,237,0 chrXII 20200 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=170;Dels=0.00;FS=10.527;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=0.548;QD=19.61;ReadPosRankSum=2.958;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:3,164:170:99:3334,381,0 chrXII 20228 . G T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=18.84;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3485,384,0 chrXII 20235 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=19.97;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3635,393,0 chrXII 20241 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=19.37;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3506,381,0 chrXII 20301 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.3200;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=22.02;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3655,390,0 chrXII 20344 . T A 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=2.863;HaplotypeScore=6.7162;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.077;QD=25.43;ReadPosRankSum=2.422;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4450,468,0 chrXII 20366 . T C 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=194;Dels=0.00;FS=8.309;HaplotypeScore=9.6452;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=0.796;QD=22.88;ReadPosRankSum=3.414;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,188:194:99:4439,486,0 chrXII 20423 . C G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=21.30;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4366,483,0 chrXII 20452 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.65;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4303,465,0 chrXII 20602 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=5.682;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;MQRankSum=0.000;QD=18.13;ReadPosRankSum=1.358;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2735,294,0 chrXII 20619 . A G 2216 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=16.29;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2249,246,0 chrXII 20630 . C A 2210 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=16.62;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2243,240,0 chrXII 20686 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.64;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2551,273,0 chrXII 20945 . A C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=66;Dels=0.00;FS=4.150;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.773;QD=20.89;ReadPosRankSum=0.773;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1412,150,0 chrXII 20990 . C A 1902 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.45;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1935,201,0 chrXII 21053 . T A 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.491;QD=23.42;ReadPosRankSum=2.938;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2680,282,0 chrXII 21252 . T C 5313.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.04;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5313,591,0 chrXII 21384 . T C 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=234;Dels=0.00;FS=5.750;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.509;QD=23.83;ReadPosRankSum=2.891;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:5577,586,0 chrXII 21405 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.8475;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.917;QD=20.78;ReadPosRankSum=1.514;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:4967,535,0 chrXII 21407 . G A 5110.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.94;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,236:243:99:5110,532,0 chrXII 21693 . C G 5792.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.36;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,255:259:99:5792,628,0 chrXII 21830 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=3.306;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.819;QD=21.70;ReadPosRankSum=1.691;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3668,405,0 chrXII 21837 . C A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=20.83;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3457,378,0 chrXII 21869 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=176;Dels=0.00;FS=12.815;HaplotypeScore=17.6593;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-2.003;QD=21.32;ReadPosRankSum=3.399;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:4,170:176:99:3753,411,0 chrXII 21957 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.54;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3799,414,0 chrXII 21959 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.5858;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.22;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3947,417,0 chrXII 22019 . T C 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=202;Dels=0.00;FS=2.901;HaplotypeScore=6.5083;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=-1.338;QD=11.99;ReadPosRankSum=2.425;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:2454,264,0 chrXII 22028 . A G 2602 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=12.95;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2635,279,0 chrXII 22049 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=2.978;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=0.136;QD=14.72;ReadPosRankSum=2.402;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3080,327,0 chrXII 22074 . T C 2660 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-1.225;QD=13.23;ReadPosRankSum=1.715;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:2693,291,0 chrXII 22078 . A G 2588 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=197;Dels=0.01;FS=6.742;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=-1.115;QD=13.14;ReadPosRankSum=2.387;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:2621,282,0 chrXII 22083 . T C 2650 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;MQRankSum=-1.290;QD=13.52;ReadPosRankSum=1.697;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2683,288,0 chrXII 22201 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=24.43;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5569,601,0 chrXII 22395 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.5762;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.77;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4075,418,0 chrXII 22436 . G A 3304.01 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=19.21;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3304,357,0 chrXII 22437 . G A 3417.01 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=19.64;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3417,357,0 chrXII 22443 . A G 3233.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=177;Dels=0.00;FS=6.001;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=-0.119;QD=18.27;ReadPosRankSum=2.915;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3268,360,0 chrXII 22491 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.78;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2985,324,0 chrXII 22509 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.19;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2989,324,0 chrXII 22572 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=26.01;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3954,409,0 chrXII 22603 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=175;Dels=0.00;FS=5.615;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.116;QD=24.82;ReadPosRankSum=2.948;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4343,477,0 chrXII 22642 . G T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.5549;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.49;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4088,430,0 chrXII 22753 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=190;Dels=0.00;FS=5.395;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.431;QD=23.52;ReadPosRankSum=2.963;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4468,483,0 chrXII 22902 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.85;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4205,459,0 chrXII 23030 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.542;DP=192;Dels=0.00;FS=11.747;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.062;QD=21.22;ReadPosRankSum=3.799;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:5,184:192:99:4074,438,0 chrXII 23062 . T A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.18;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4231,445,0 chrXII 23159 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.31;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3087,336,0 chrXII 23228 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3375;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.40;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4001,432,0 chrXII 23505 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=151.8665;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.47;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3966,420,0 chrXII 23568 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.340;QD=20.65;ReadPosRankSum=1.710;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3284,357,0 chrXII 23769 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.56;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4173,433,0 chrXII 23820 . G C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.3885;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=18.29;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3915,414,0 chrXII 23826 . C G 3450.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=16.12;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3450,375,0 chrXII 23845 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=217;Dels=0.00;FS=6.018;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.644;QD=14.85;ReadPosRankSum=2.949;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:3255,345,0 chrXII 23846 . C A 3207 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=14.71;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3240,342,0 chrXII 23860 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=3.653;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.175;QD=14.60;ReadPosRankSum=1.684;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:3246,354,0 chrXII 23981 . C T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.90;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4730,505,0 chrXII 24051 . T C 5996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=18.9107;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=0.357;QD=23.61;ReadPosRankSum=1.718;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:5996,640,0 chrXII 24179 . G A 5052.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.2697;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.52;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5052,529,0 chrXII 24246 . T G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.05;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4499,495,0 chrXII 24279 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.819;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.730;QD=21.40;ReadPosRankSum=1.645;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3402,375,0 chrXII 24315 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.83;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2824,297,0 chrXII 24323 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.80;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2726,297,0 chrXII 24384 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.67;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3467,381,0 chrXII 24591 . T A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.5472;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.34;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3337,348,0 chrXII 24681 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=25.28;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4803,510,0 chrXII 24890 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.59;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3994,418,0 chrXII 24893 . T A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.57;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3818,403,0 chrXII 24926 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.28;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3234,339,0 chrXII 24948 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=181;Dels=0.00;FS=2.957;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.307;QD=19.37;ReadPosRankSum=2.395;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3506,378,0 chrXII 25143 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=24.34;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3481,372,0 chrXII 25333 . C T 526 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.53;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:559,60,0 chrXII 25369 . T G 271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;MQRankSum=-0.975;QD=8.47;ReadPosRankSum=1.625;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:33:304,33,0 chrXII 25411 . C T 631 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=11.91;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:72:664,72,0 chrXII 25449 . C T 850 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.32;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:883,96,0 chrXII 25493 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.35;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1078,114,0 chrXII 25499 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.76;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1179,129,0 chrXII 25545 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.46;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1486,162,0 chrXII 25640 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.33;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1931,210,0 chrXII 25817 . T G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.45;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3349,360,0 chrXII 25933 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=139;Dels=0.00;FS=6.721;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.949;QD=23.94;ReadPosRankSum=2.377;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:3328,354,0 chrXII 26176 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.74;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4107,435,0 chrXII 26194 . C G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.26;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3718,393,0 chrXII 26362 . C G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.69;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4107,447,0 chrXII 26817 . G T 2587 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.20;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2620,276,0 chrXII 26922 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.25;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4026,435,0 chrXII 27767 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.2338;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.06;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5235,550,0 chrXII 28084 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=177;Dels=0.00;FS=6.770;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.607;QD=24.19;ReadPosRankSum=2.380;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4281,457,0 chrXII 28176 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.23;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2283,252,0 chrXII 28252 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.100;QD=14.37;ReadPosRankSum=1.682;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2002,219,0 chrXII 28285 . A T 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.211;QD=17.72;ReadPosRankSum=1.704;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2213,225,0 chrXII 28293 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.112;QD=16.18;ReadPosRankSum=1.704;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2055,222,0 chrXII 28349 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=12.3198;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.09;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2209,243,0 chrXII 28431 . T C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.126;QD=22.62;ReadPosRankSum=1.701;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2521,273,0 chrXII 28487 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=6.609;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.567;QD=23.00;ReadPosRankSum=2.407;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2701,297,0 chrXII 28676 . G C 3962.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3962,429,0 chrXII 28713 . C G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3947,441,0 chrXII 28784 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3135,330,0 chrXII 28824 . G C 4264.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.2533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4264,462,0 chrXII 28868 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4942,534,0 chrXII 29085 . G C 4509.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.0594;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.32;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:4509,492,0 chrXII 29137 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.65;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4825,516,0 chrXII 29160 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.92;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5024,520,0 chrXII 29414 . A C 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=196;Dels=0.00;FS=8.497;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.708;QD=23.51;ReadPosRankSum=2.399;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4607,490,0 chrXII 29437 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=221;Dels=0.00;FS=2.785;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.194;QD=18.71;ReadPosRankSum=2.383;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4135,447,0 chrXII 29440 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.63;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4173,447,0 chrXII 29612 . A G 5483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.5669;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.331;QD=24.48;ReadPosRankSum=1.685;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,219:224:99:5483,583,0 chrXII 29773 . C A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.06;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4296,451,0 chrXII 29781 . T G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=192;Dels=0.00;FS=2.569;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=1.330;QD=19.39;ReadPosRankSum=2.911;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3722,420,0 chrXII 29948 . T A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.11;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3928,415,0 chrXII 30012 . A G 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.169;QD=24.37;ReadPosRankSum=1.714;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4825,525,0 chrXII 30087 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3119,336,0 chrXII 30327 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3598,390,0 chrXII 30768 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.69;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3091,336,0 chrXII 30930 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.62;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3520,381,0 chrXII 31128 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.11;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3472,363,0 chrXII 31221 . T C 5239.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.8122;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.11;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5239,582,0 chrXII 31551 . C A 2075 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2108,222,0 chrXII 31899 . T A 782 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:815,87,0 chrXII 33112 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=6.309;HaplotypeScore=18.7500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.938;QD=22.99;ReadPosRankSum=2.391;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3932,417,0 chrXII 36311 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.7750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3693,396,0 chrXII 36662 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.03;FS=0.000;HaplotypeScore=6.2042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2002,210,0 chrXII 37899 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=3.014;HaplotypeScore=15.7127;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.020;QD=22.66;ReadPosRankSum=2.376;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3761,402,0 chrXII 40119 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3965,418,0 chrXII 46414 . T A 1752 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=72.4881;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.90;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1785,189,0 chrXII 47928 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=25.83;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4184,444,0 chrXII 48833 . T A 918 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=20.86;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:951,105,0 chrXII 50292 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.342;QD=25.80;ReadPosRankSum=1.659;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3663,396,0 chrXII 50531 . C T 5929.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5929,645,0 chrXII 51497 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;DP=190;Dels=0.00;FS=3.626;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.201;QD=23.92;ReadPosRankSum=-0.907;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4545,457,0 chrXII 52687 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=19.71;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1196,129,0 chrXII 55033 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.62;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4038,415,0 chrXII 56781 . G T 2684 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.30;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2717,297,0 chrXII 59689 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.22;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3380,357,0 chrXII 61318 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=3.507;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.287;QD=23.73;ReadPosRankSum=1.638;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3536,390,0 chrXII 62374 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3256,345,0 chrXII 63616 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.959;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=1.085;QD=22.17;ReadPosRankSum=1.570;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2405,264,0 chrXII 63675 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.76;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2029,213,0 chrXII 63859 . C G 1720 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.63;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1753,186,0 chrXII 63864 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.09;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1788,186,0 chrXII 64266 . A C 1998 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=14.07;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2031,216,0 chrXII 64272 . C T 1935 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=13.53;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1968,216,0 chrXII 64275 . T A 1980 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=0.707;QD=13.94;ReadPosRankSum=1.659;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2013,213,0 chrXII 64278 . C T 1657 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=11.92;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1690,180,0 chrXII 64284 . A G 1645 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=12.10;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1678,186,0 chrXII 64307 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=15.50;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2095,222,0 chrXII 64437 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=218;Dels=0.00;FS=17.251;HaplotypeScore=21.2307;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;MQRankSum=-0.014;QD=15.37;ReadPosRankSum=6.452;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:32,186:218:18:3350,18,0 chrXII 64614 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=21.69;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3688,405,0 chrXII 64683 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=14.33;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1781,195,0 chrXII 64692 . A G 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;MQRankSum=0.987;QD=12.60;ReadPosRankSum=1.700;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1381,159,0 chrXII 64722 . A C 1202 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=104;Dels=0.00;FS=8.819;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=-0.675;QD=11.56;ReadPosRankSum=2.402;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1235,135,0 chrXII 64728 . C T 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=11.06;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1150,126,0 chrXII 64731 . T A 1077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=2.694;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-1.039;QD=11.22;ReadPosRankSum=2.373;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1110,114,0 chrXII 64734 . C T 1059 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=10.70;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1092,114,0 chrXII 64740 . A G 1278 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=12.06;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1311,144,0 chrXII 64763 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8711;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=17.34;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2738,288,0 chrXII 64824 . A G 5445.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=23.37;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5445,606,0 chrXII 64866 . C T 6211.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.7844;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=24.94;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6211,649,0 chrXII 65441 . G C 2027 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.47;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2060,228,0 chrXII 65517 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.971;QD=16.63;ReadPosRankSum=1.694;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1546,171,0 chrXII 65523 . A T 1520 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.34;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1553,162,0 chrXII 65695 . C A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.30;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4174,439,0 chrXII 65728 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.10;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4170,456,0 chrXII 65835 . C T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.64;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4335,471,0 chrXII 65841 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.50;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4291,454,0 chrXII 65892 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.132;DP=249;Dels=0.00;FS=19.785;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.172;QD=18.19;ReadPosRankSum=4.126;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:6,240:249:99:4529,504,0 chrXII 65992 . C T 5387.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.3099;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.54;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5387,559,0 chrXII 66338 . G A 4912.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.96;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4912,517,0 chrXII 66595 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=157;Dels=0.00;FS=2.857;HaplotypeScore=17.9883;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.347;QD=16.01;ReadPosRankSum=2.355;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:2546,276,0 chrXII 66714 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3828,414,0 chrXII 66946 . T C 5730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=23.20;ReadPosRankSum=1.634;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5730,630,0 chrXII 67069 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=21.0695;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.781;QD=21.69;ReadPosRankSum=1.715;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4447,486,0 chrXII 67247 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=3.009;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.363;QD=24.39;ReadPosRankSum=2.403;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3902,411,0 chrXII 67354 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.8116;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.01;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3499,366,0 chrXII 67367 . A G 3013 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.50;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3046,327,0 chrXII 67368 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.65;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3237,334,0 chrXII 67726 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3106,339,0 chrXII 68071 . T C 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=3.424;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.420;QD=24.08;ReadPosRankSum=1.680;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4767,519,0 chrXII 68253 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.50;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4335,454,0 chrXII 68368 . T A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.20;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3374,351,0 chrXII 68373 . A T 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=7.360;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.163;QD=20.17;ReadPosRankSum=2.403;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3220,345,0 chrXII 68671 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=3.493;HaplotypeScore=14.6526;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.322;QD=22.88;ReadPosRankSum=1.550;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3524,378,0 chrXII 68750 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.33;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3893,406,0 chrXII 69006 . T A 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.595;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.597;QD=21.59;ReadPosRankSum=1.703;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2602,285,0 chrXII 69396 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2623,279,0 chrXII 70019 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6464;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.27;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3411,366,0 chrXII 70044 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.00;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3208,331,0 chrXII 70124 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=8.226;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.020;QD=25.46;ReadPosRankSum=2.415;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3590,387,0 chrXII 70244 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.02;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4179,436,0 chrXII 70541 . A T 1666 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.32;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1699,189,0 chrXII 71063 . C G 4875.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.87;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4875,522,0 chrXII 71641 . C G 4482.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4482,489,0 chrXII 71722 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.845;QD=23.98;ReadPosRankSum=1.711;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3932,415,0 chrXII 72520 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=215;Dels=0.00;FS=5.683;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.573;QD=22.52;ReadPosRankSum=2.958;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4842,517,0 chrXII 72632 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=179;Dels=0.00;FS=5.333;HaplotypeScore=13.4126;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.217;QD=22.56;ReadPosRankSum=2.914;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:3,173:179:99:4038,432,0 chrXII 72987 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.91;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3171,333,0 chrXII 73290 . C A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.43;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4018,418,0 chrXII 73366 . T C 4687.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.2678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4687,519,0 chrXII 73717 . T G 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.624;QD=25.50;ReadPosRankSum=1.652;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4437,466,0 chrXII 74641 . T C 1187 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1220,132,0 chrXII 74872 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.14;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2972,315,0 chrXII 75086 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=138;Dels=0.00;FS=6.647;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.870;QD=23.43;ReadPosRankSum=2.414;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3265,345,0 chrXII 75903 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.06;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2616,273,0 chrXII 76057 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3363,351,0 chrXII 76544 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=2.624;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.463;QD=23.15;ReadPosRankSum=2.416;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3380,357,0 chrXII 76603 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.38;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3366,354,0 chrXII 76840 . T C 2168 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.58;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2201,237,0 chrXII 76842 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.72;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2260,240,0 chrXII 76925 . A G 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.121;QD=21.92;ReadPosRankSum=1.664;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1151,123,0 chrXII 77024 . C G 769 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.97;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:87:802,87,0 chrXII 77139 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:99:996,102,0 chrXII 77220 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.446;QD=25.92;ReadPosRankSum=1.696;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2573,276,0 chrXII 77520 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.08;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3938,406,0 chrXII 77743 . A C 2538 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2571,279,0 chrXII 78276 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.41;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4091,430,0 chrXII 78394 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4425,454,0 chrXII 79336 . G A 5190.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.48;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5190,535,0 chrXII 79798 . G C 3224.03 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.15;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3257,366,0 chrXII 79987 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,147,0 chrXII 80023 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1622,171,0 chrXII 80089 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.93;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1305,141,0 chrXII 80515 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2968,309,0 chrXII 80880 . T G 1352 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.92;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1385,150,0 chrXII 81026 . C T 724 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=19.57;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:757,81,0 chrXII 81045 . T C 810 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.28;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:843,90,0 chrXII 81096 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.96;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1450,153,0 chrXII 81240 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=10.5144;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.92;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1766,186,0 chrXII 82033 . A G 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=199;Dels=0.00;FS=6.087;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.490;QD=23.03;ReadPosRankSum=2.874;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4582,495,0 chrXII 82171 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=169;Dels=0.00;FS=2.735;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.446;QD=22.30;ReadPosRankSum=2.421;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3768,408,0 chrXII 82288 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=3.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.191;QD=23.29;ReadPosRankSum=2.395;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3177,351,0 chrXII 82321 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.82;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3499,369,0 chrXII 82757 . A G 4895.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7431;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.88;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4895,520,0 chrXII 82779 . A T 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=199;Dels=0.00;FS=6.355;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.104;QD=22.35;ReadPosRankSum=2.141;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4447,477,0 chrXII 82792 . A G 4290.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.45;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4290,474,0 chrXII 82946 . T C 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=3.463;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.686;QD=24.01;ReadPosRankSum=1.715;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4875,534,0 chrXII 83008 . C G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.58;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3560,390,0 chrXII 84451 . A G 3104 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3137,333,0 chrXII 84883 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.011;QD=22.75;ReadPosRankSum=1.709;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3480,378,0 chrXII 85270 . C G 6218.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.01;SB=-3.371e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6218,673,0 chrXII 85385 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.2542;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.16;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4979,520,0 chrXII 85632 . T G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=2.985;HaplotypeScore=14.2223;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.409;QD=21.25;ReadPosRankSum=2.380;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,175:182:99:3867,417,0 chrXII 86369 . A T 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=212;Dels=0.00;FS=3.093;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.716;QD=23.87;ReadPosRankSum=1.716;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5061,532,0 chrXII 86595 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=25.8518;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=13.23;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1012,111,0 chrXII 86612 . A T 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=40.5335;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=-2.136;QD=1.27;ReadPosRankSum=2.360;SB=-1.155e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:12:105,12,0 chrXII 86628 . T C 415 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=9.22;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:48:448,48,0 chrXII 86679 . C T 514 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=17.72;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:547,57,0 chrXII 86881 . T C 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.258;QD=21.30;ReadPosRankSum=1.585;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1034,114,0 chrXII 86965 . A C 1819 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.56;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1852,204,0 chrXII 86978 . T A 1854 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.94;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1887,198,0 chrXII 87286 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2010,216,0 chrXII 87340 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.60;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3083,330,0 chrXII 87687 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=23.71;ReadPosRankSum=1.678;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4553,487,0 chrXII 88053 . A T 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.793;QD=20.85;ReadPosRankSum=2.847;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3182,348,0 chrXII 88069 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.455;QD=19.56;ReadPosRankSum=1.709;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2967,321,0 chrXII 88298 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.63;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1366,144,0 chrXII 88422 . A T 2077 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.96;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2110,219,0 chrXII 88452 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.1719;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.44;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1838,192,0 chrXII 88703 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.01;FS=3.301;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.835;QD=22.98;ReadPosRankSum=1.682;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3250,348,0 chrXII 88892 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.928;QD=21.06;ReadPosRankSum=1.704;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2665,291,0 chrXII 88901 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.57;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3102,319,0 chrXII 89132 . C T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.6010;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.80;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4861,511,0 chrXII 89774 . A T 5093.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.36;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5093,532,0 chrXII 89864 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.9420;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.64;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4509,489,0 chrXII 90629 . C G 3895.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.2076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.18;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3895,420,0 chrXII 91951 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=20.37;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,150,0 chrXII 91967 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=18.97;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1247,135,0 chrXII 92007 . T C 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=7.533;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;MQRankSum=-0.306;QD=16.63;ReadPosRankSum=1.664;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:96:881,96,0 chrXII 92018 . C A 873 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=17.82;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:906,96,0 chrXII 92134 . T A 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=1;MQRankSum=-0.499;QD=17.43;ReadPosRankSum=1.615;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1079,114,0 chrXII 92153 . C G 771 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=1;QD=14.28;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:804,87,0 chrXII 92163 . T A 604 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=1;QD=12.58;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:637,66,0 chrXII 92233 . T C 796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=1.024;QD=18.09;ReadPosRankSum=1.654;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:90:829,90,0 chrXII 92258 . A T 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=3.100;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=-0.322;QD=17.64;ReadPosRankSum=2.352;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:96:915,96,0 chrXII 92266 . C T 858 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=17.87;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:891,93,0 chrXII 92295 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=19.41;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1081,114,0 chrXII 92362 . A G 1330 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=20.78;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1363,150,0 chrXII 92366 . G T 1422 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=21.22;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1455,162,0 chrXII 92405 . A G 749 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=15.60;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:782,84,0 chrXII 92408 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=14.37;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:766,84,0 chrXII 92471 . T C 548 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=12.74;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:581,66,0 chrXII 92472 . T C 515 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=11.98;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:548,63,0 chrXII 92482 . G A 521 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=11.84;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:554,63,0 chrXII 92496 . C A 656 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=13.96;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:689,78,0 chrXII 92501 . C T 680 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=14.17;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:713,81,0 chrXII 92528 . T C 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;MQRankSum=1.189;QD=15.18;ReadPosRankSum=1.664;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:87:807,87,0 chrXII 92535 . C T 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.128;DP=54;Dels=0.00;FS=3.010;HaplotypeScore=5.2287;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=0;MQRankSum=-1.155;QD=14.87;ReadPosRankSum=1.668;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:74:836,74,0 chrXII 92595 . C A 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DP=81;Dels=0.00;FS=12.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=2;MQRankSum=1.975;QD=15.28;ReadPosRankSum=-2.683;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:9,72:81:91:1271,91,0 chrXII 92596 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;DP=81;Dels=0.00;FS=8.390;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=2;MQRankSum=1.292;QD=14.35;ReadPosRankSum=-2.104;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:10,71:81:88:1195,88,0 chrXII 92677 . C A 857 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.82;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:890,93,0 chrXII 92680 . T C 832 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;MQRankSum=-1.553;QD=14.34;ReadPosRankSum=1.673;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:93:865,93,0 chrXII 92685 . T A 828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=-1.897;QD=12.36;ReadPosRankSum=2.266;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:96:861,96,0 chrXII 92716 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=15.26;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1452,150,0 chrXII 92744 . T G 1497 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=89.9072;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=14.97;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1530,168,0 chrXII 92789 . G T 1553 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=12.52;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1586,171,0 chrXII 92800 . A T 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=4.845;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;MQRankSum=0.073;QD=13.43;ReadPosRankSum=1.703;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1631,174,0 chrXII 92878 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.505;QD=24.85;ReadPosRankSum=1.682;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3429,375,0 chrXII 93019 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=24.21;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3873,417,0 chrXII 93045 . T G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.378;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=1.404;QD=23.64;ReadPosRankSum=1.685;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3546,381,0 chrXII 93073 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.16;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2859,309,0 chrXII 93102 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.09;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2330,249,0 chrXII 93142 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.54;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2683,291,0 chrXII 93161 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=25.77;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2765,285,0 chrXII 93274 . C A 2526 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=98.3554;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.35;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2559,276,0 chrXII 93314 . A T 2673 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.38;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2706,285,0 chrXII 93341 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.07;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2482,264,0 chrXII 93360 . T C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.034;QD=18.56;ReadPosRankSum=1.704;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2334,255,0 chrXII 93418 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.75;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3002,312,0 chrXII 93488 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.3923;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=1.708;QD=22.63;ReadPosRankSum=-0.356;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3349,332,0 chrXII 93654 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.08;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3277,342,0 chrXII 93662 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.749;DP=139;Dels=0.00;FS=11.855;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.096;QD=20.63;ReadPosRankSum=3.682;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:5,134:139:99:2901,312,0 chrXII 93814 . G C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.6189;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.71;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3821,420,0 chrXII 93954 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=23.99;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4150,453,0 chrXII 94031 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=192;Dels=0.00;FS=2.556;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.073;QD=20.46;ReadPosRankSum=2.964;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3929,414,0 chrXII 94032 . A T 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=193;Dels=0.00;FS=5.247;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-1.380;QD=20.68;ReadPosRankSum=2.818;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:3992,415,0 chrXII 94044 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.4931;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=22.13;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4558,466,0 chrXII 94172 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=6.336;HaplotypeScore=13.3923;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.595;QD=21.69;ReadPosRankSum=2.370;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3362,375,0 chrXII 94500 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.41;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3769,391,0 chrXII 94522 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.82;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3201,336,0 chrXII 94566 . C G 3021 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.71;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3054,330,0 chrXII 94617 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.726;QD=24.98;ReadPosRankSum=1.620;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3131,339,0 chrXII 94650 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1094;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.336;QD=26.22;ReadPosRankSum=1.551;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3540,367,0 chrXII 94681 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.93;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3901,411,0 chrXII 94959 . A G 4867.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.0967;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.85;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4867,525,0 chrXII 95188 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.61;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1447,153,0 chrXII 95641 . T A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=27.10;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3496,363,0 chrXII 95821 . G T 5698.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=19.0569;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=1;QD=23.45;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5698,601,0 chrXII 95935 . A G 1800 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=58;MQRankSum=-1.465;QD=10.98;ReadPosRankSum=2.403;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:35,129:164:99:1833,201,0 chrXII 95937 . C A 1835 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=9.1617;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=57;QD=11.47;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:32,127:159:99:1868,201,0 chrXII 95938 . A G 1788 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=57;QD=11.17;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:33,127:160:99:1821,201,0 chrXII 95944 . C T 1510 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=169;Dels=0.00;FS=2.492;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=51;MQRankSum=-0.129;QD=8.93;ReadPosRankSum=2.940;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:33,136:169:99:1543,189,0 chrXII 95945 . T C 1505 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=171;Dels=0.01;FS=2.492;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=52;MQRankSum=0.078;QD=8.80;ReadPosRankSum=2.940;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:35,135:170:99:1538,189,0 chrXII 95992 . G A 2111 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=20;QD=11.23;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:17,171:188:99:2144,231,0 chrXII 96004 . C T 2077 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=17;QD=11.48;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:17,164:181:99:2110,222,0 chrXII 96010 . A G 1876 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=176;Dels=0.00;FS=3.092;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=15;MQRankSum=0.312;QD=10.66;ReadPosRankSum=1.711;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:16,160:176:99:1909,213,0 chrXII 96022 . G A 1880 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=10;QD=11.46;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:9,155:164:99:1913,198,0 chrXII 96025 . G A 1961 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=14;QD=11.81;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:12,154:166:99:1994,207,0 chrXII 96028 . G A 1954 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=17;QD=11.77;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:14,151:166:99:1987,207,0 chrXII 96034 . A G 1771 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=168;Dels=0.00;FS=7.420;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=23;MQRankSum=0.229;QD=10.54;ReadPosRankSum=2.416;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:19,149:168:99:1804,198,0 chrXII 96040 . A G 1621 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=169;Dels=0.00;FS=4.187;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=30;MQRankSum=0.212;QD=9.59;ReadPosRankSum=1.707;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:21,148:169:99:1654,177,0 chrXII 96151 . G A 2106 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=58;QD=13.76;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:36,117:153:99:2139,231,0 chrXII 96166 . A G 2392 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=39;QD=15.53;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:27,127:154:99:2425,270,0 chrXII 96169 . G A 2495 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=33;QD=16.52;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:22,127:151:99:2528,270,0 chrXII 96340 . A G 746 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.91;MQ0=55;QD=8.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,64:89:84:779,84,0 chrXII 96400 . T A 1781 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=87;QD=10.73;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:31,135:166:99:1814,186,0 chrXII 96451 . T C 1428 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=151;Dels=0.00;FS=5.740;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=19.77;MQ0=76;MQRankSum=0.993;QD=9.46;ReadPosRankSum=-1.455;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:25,126:151:99:1461,156,0 chrXII 96472 . G A 884 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=112;Dels=0.00;FS=4.058;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=55;MQRankSum=0.681;QD=7.89;ReadPosRankSum=-0.557;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:14,97:112:99:917,99,0 chrXII 96514 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.43;MQ0=29;QD=1.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:43:9:78,9,0 chrXII 97108 . C T 1943.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=276;Dels=0.00;FS=230.263;HaplotypeScore=20.4451;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=11;MQRankSum=7.712;QD=7.04;ReadPosRankSum=-1.047;SB=-9.780e+02 GT:AD:DP:GQ:PL 0/1:124,151:276:99:1973,0,1941 chrXII 97129 . G A 1207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=250;Dels=0.00;FS=360.750;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=32.74;MQ0=11;MQRankSum=9.642;QD=4.83;ReadPosRankSum=0.473;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:115,135:250:99:1237,0,1776 chrXII 97147 . G A 1166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.607;DP=262;Dels=0.00;FS=368.701;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=14;MQRankSum=10.284;QD=4.45;ReadPosRankSum=-1.890;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/1:101,161:262:99:1196,0,1419 chrXII 97153 . G T 1285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.288;DP=262;Dels=0.00;FS=365.577;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=14;MQRankSum=10.373;QD=4.90;ReadPosRankSum=-1.613;SB=-7.140e+02 GT:AD:DP:GQ:PL 0/1:99,163:262:99:1315,0,1305 chrXII 97159 . G T 1366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.597;DP=279;Dels=0.00;FS=362.682;HaplotypeScore=6.5165;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=14;MQRankSum=10.150;QD=4.90;ReadPosRankSum=-2.151;SB=-8.830e+02 GT:AD:DP:GQ:PL 0/1:97,182:279:99:1396,0,1232 chrXII 97171 . A G 2144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;DP=307;Dels=0.00;FS=330.485;HaplotypeScore=17.7313;MLEAC=1;MLEAF=0.500;MQ=36.27;MQ0=14;MQRankSum=9.477;QD=6.98;ReadPosRankSum=-2.127;SB=-1.171e+03 GT:AD:DP:GQ:PL 0/1:92,213:307:99:2174,0,945 chrXII 97429 . G A 4632.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=2;QD=23.88;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4632,487,0 chrXII 97559 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2432,270,0 chrXII 97599 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.58;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2472,267,0 chrXII 97654 . A C 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=4.574;HaplotypeScore=4.4135;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=-1.289;QD=22.42;ReadPosRankSum=1.692;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1961,216,0 chrXII 97828 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=22.67;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1756,195,0 chrXII 98056 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.299;QD=25.60;ReadPosRankSum=2.929;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:3,125:129:99:3303,351,0 chrXII 98260 . C T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.9013;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.54;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4980,514,0 chrXII 98309 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4540,478,0 chrXII 98471 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.627;QD=25.25;ReadPosRankSum=1.627;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4167,439,0 chrXII 98655 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4773,505,0 chrXII 98696 . G T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4524,475,0 chrXII 99134 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.13;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3744,417,0 chrXII 99257 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.0536;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=18.96;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:4266,468,0 chrXII 99539 . T A 6911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=286;Dels=0.00;FS=3.004;HaplotypeScore=17.3392;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.797;QD=24.16;ReadPosRankSum=2.424;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:2,284:286:99:6911,718,0 chrXII 99667 . G A 7197.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.80;SB=-3.973e+03 GT:AD:DP:GQ:PL 1/1:0,345:346:99:7197,787,0 chrXII 100126 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.97;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3284,339,0 chrXII 100150 . C G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.09;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3371,366,0 chrXII 100257 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2299,243,0 chrXII 100464 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7417;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.183;QD=24.70;ReadPosRankSum=2.411;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3194,342,0 chrXII 100682 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.2286;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.187;QD=22.12;ReadPosRankSum=1.693;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3981,435,0 chrXII 101264 . T C 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=221;Dels=0.00;FS=5.884;HaplotypeScore=16.9418;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.014;QD=23.46;ReadPosRankSum=2.959;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:5185,567,0 chrXII 101729 . A T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.31;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4632,487,0 chrXII 101965 . T G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=128;Dels=0.00;FS=11.785;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.056;QD=22.39;ReadPosRankSum=2.913;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2899,312,0 chrXII 102251 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=133;Dels=0.00;FS=3.358;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.586;QD=21.41;ReadPosRankSum=1.599;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2880,318,0 chrXII 102371 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3740,393,0 chrXII 102471 . T G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.8552;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.342;QD=22.72;ReadPosRankSum=1.819;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4180,456,0 chrXII 102614 . C G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.8830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3692,411,0 chrXII 103352 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.2800;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.71;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3979,429,0 chrXII 103524 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=26.65;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4104,418,0 chrXII 103584 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=22.87;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3476,384,0 chrXII 103655 . A G 1221.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.698;DP=294;Dels=0.00;FS=149.725;HaplotypeScore=64.4651;MLEAC=1;MLEAF=0.500;MQ=37.64;MQ0=0;MQRankSum=-3.823;QD=4.15;ReadPosRankSum=0.575;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:194,99:294:99:1251,0,2325 chrXII 103660 . A C 1115.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.882;DP=294;Dels=0.00;FS=161.150;HaplotypeScore=69.7315;MLEAC=1;MLEAF=0.500;MQ=37.13;MQ0=0;MQRankSum=-3.538;QD=3.79;ReadPosRankSum=-0.579;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:197,97:294:99:1145,0,2594 chrXII 103664 . T C 908.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.859;DP=288;Dels=0.00;FS=181.057;HaplotypeScore=67.7607;MLEAC=1;MLEAF=0.500;MQ=37.34;MQ0=0;MQRankSum=-4.373;QD=3.15;ReadPosRankSum=-0.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,90:288:99:938,0,2653 chrXII 103670 . C T 1360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.146;DP=291;Dels=0.00;FS=20.046;HaplotypeScore=65.4727;MLEAC=1;MLEAF=0.500;MQ=38.02;MQ0=0;MQRankSum=-6.530;QD=4.67;ReadPosRankSum=-2.503;SB=-1.245e+03 GT:AD:DP:GQ:PL 0/1:140,151:291:99:1390,0,2286 chrXII 103682 . C T 638.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.228;DP=286;Dels=0.00;FS=175.780;HaplotypeScore=156.3288;MLEAC=1;MLEAF=0.500;MQ=38.78;MQ0=0;MQRankSum=-3.598;QD=2.23;ReadPosRankSum=-1.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,77:286:99:668,0,3331 chrXII 103697 . T C 1080.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=286;Dels=0.00;FS=49.129;HaplotypeScore=202.5309;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-7.568;QD=3.78;ReadPosRankSum=2.597;SB=-5.590e+02 GT:AD:DP:GQ:PL 0/1:166,120:286:99:1110,0,3300 chrXII 103700 . A G 5756.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=289;Dels=0.00;FS=8.360;HaplotypeScore=197.3637;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;MQRankSum=0.515;QD=19.92;ReadPosRankSum=3.419;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:4,285:289:99:5756,616,0 chrXII 103706 . G A 540.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.272;DP=283;Dels=0.00;FS=194.143;HaplotypeScore=95.9664;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=0;MQRankSum=-6.674;QD=1.91;ReadPosRankSum=2.208;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,64:283:99:570,0,3887 chrXII 103707 . A G 953.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DP=275;Dels=0.00;FS=63.953;HaplotypeScore=90.8516;MLEAC=1;MLEAF=0.500;MQ=42.29;MQ0=0;MQRankSum=-8.037;QD=3.47;ReadPosRankSum=4.728;SB=-4.070e+02 GT:AD:DP:GQ:PL 0/1:170,104:275:99:983,0,3588 chrXII 103713 . G A 945.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.657;DP=274;Dels=0.00;FS=76.241;HaplotypeScore=122.4375;MLEAC=1;MLEAF=0.500;MQ=42.06;MQ0=0;MQRankSum=-7.217;QD=3.45;ReadPosRankSum=3.274;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:167,107:274:99:975,0,3539 chrXII 103723 . T C 884.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.936;DP=222;Dels=0.00;FS=52.225;HaplotypeScore=72.4460;MLEAC=1;MLEAF=0.500;MQ=39.71;MQ0=0;MQRankSum=-4.700;QD=3.98;ReadPosRankSum=0.712;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:126,92:222:99:914,0,1903 chrXII 103729 . G A 491.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.433;DP=216;Dels=0.00;FS=114.148;HaplotypeScore=65.4690;MLEAC=1;MLEAF=0.500;MQ=40.25;MQ0=0;MQRankSum=-4.388;QD=2.27;ReadPosRankSum=1.289;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,60:216:99:521,0,2869 chrXII 103737 . G T 780.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.188;DP=215;Dels=0.00;FS=63.773;HaplotypeScore=37.5224;MLEAC=1;MLEAF=0.500;MQ=39.65;MQ0=0;MQRankSum=-6.243;QD=3.63;ReadPosRankSum=-1.066;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:130,83:215:99:810,0,2466 chrXII 103751 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.209;DP=200;Dels=0.00;FS=15.495;HaplotypeScore=9.0052;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;MQRankSum=0.429;QD=19.63;ReadPosRankSum=2.710;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:9,190:200:99:3926,342,0 chrXII 103806 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=24.12;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3763,405,0 chrXII 103886 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.31;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3939,432,0 chrXII 103918 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.32;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3526,387,0 chrXII 104468 . A T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.0294;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.88;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4279,454,0 chrXII 104637 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.1640;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.75;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4129,424,0 chrXII 104679 . C G 4201.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.3934;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.88;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4201,471,0 chrXII 105885 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.107;HaplotypeScore=17.5821;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.457;QD=23.55;ReadPosRankSum=1.675;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4310,480,0 chrXII 107406 . G A 6714.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6714,697,0 chrXII 108688 . G A 4965.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.46;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4965,520,0 chrXII 108813 . G A 6051.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.0584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6051,643,0 chrXII 109033 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=6.085;HaplotypeScore=10.6736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.998;QD=24.14;ReadPosRankSum=1.715;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4900,520,0 chrXII 109073 . T A 3180 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.87;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3213,339,0 chrXII 109155 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.168;QD=23.11;ReadPosRankSum=1.684;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3351,357,0 chrXII 109244 . A G 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.979;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.226;QD=24.83;ReadPosRankSum=1.702;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2889,303,0 chrXII 109357 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.19;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2221,231,0 chrXII 109365 . T C 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=112;Dels=0.00;FS=7.901;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-1.918;QD=18.14;ReadPosRankSum=2.339;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2065,228,0 chrXII 109400 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.040;QD=17.74;ReadPosRankSum=1.705;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2321,249,0 chrXII 109403 . A C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-0.040;QD=17.77;ReadPosRankSum=1.706;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2361,249,0 chrXII 109427 . A T 2177 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.88;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2210,243,0 chrXII 109508 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.1890;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=25.58;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3684,385,0 chrXII 109577 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=24.83;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3261,339,0 chrXII 109707 . T A 3068 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.45;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3101,327,0 chrXII 109729 . A C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.000;QD=18.50;ReadPosRankSum=1.685;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2771,303,0 chrXII 109736 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.31;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2679,279,0 chrXII 109765 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.68;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2414,255,0 chrXII 109886 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.08;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2898,303,0 chrXII 110064 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0254;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.92;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3896,412,0 chrXII 110463 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.31;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4643,493,0 chrXII 110709 . C T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.8212;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.38;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5751,621,0 chrXII 110807 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=226;Dels=0.00;FS=9.060;HaplotypeScore=23.7656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.271;QD=21.44;ReadPosRankSum=3.398;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:4,219:226:99:4846,522,0 chrXII 110988 . G C 5436.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.0249;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.10;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:5436,600,0 chrXII 111246 . G A 5164.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.6356;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5164,541,0 chrXII 111423 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.262;QD=19.12;ReadPosRankSum=1.647;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3130,336,0 chrXII 111826 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.748;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.434;QD=24.50;ReadPosRankSum=1.705;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3169,339,0 chrXII 111932 . T C 4085.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.557;QD=23.89;ReadPosRankSum=1.671;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4085,438,0 chrXII 111940 . G A 3823.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.89;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3823,405,0 chrXII 111941 . A C 3790.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.29;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3790,411,0 chrXII 111993 . C A 2417 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8475;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.48;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2450,264,0 chrXII 112101 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.54;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3978,432,0 chrXII 112204 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.459;QD=21.01;ReadPosRankSum=1.614;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2491,264,0 chrXII 112240 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.863;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.524;QD=20.11;ReadPosRankSum=1.678;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2627,294,0 chrXII 112278 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.55;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3290,340,0 chrXII 112356 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.89;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2917,318,0 chrXII 112358 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=20.69;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3116,324,0 chrXII 112546 . C A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.32;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3288,348,0 chrXII 112689 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.40;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3508,366,0 chrXII 112702 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.23;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3538,384,0 chrXII 112732 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.71;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3469,381,0 chrXII 113022 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=23.15;ReadPosRankSum=1.665;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3612,390,0 chrXII 113068 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.89;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2937,324,0 chrXII 113144 . T C 2627 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.45;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2660,285,0 chrXII 113145 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.075;QD=21.62;ReadPosRankSum=1.702;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2584,282,0 chrXII 113252 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.385;QD=23.97;ReadPosRankSum=1.708;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3476,375,0 chrXII 113367 . G A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.34;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4771,502,0 chrXII 113451 . T A 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.448;QD=24.28;ReadPosRankSum=1.671;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4128,433,0 chrXII 113494 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.06;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3706,405,0 chrXII 113564 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.87;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3755,396,0 chrXII 113660 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.035;QD=24.12;ReadPosRankSum=1.687;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3714,393,0 chrXII 113673 . G C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.11;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3713,390,0 chrXII 113758 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.600;QD=25.31;ReadPosRankSum=1.699;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2766,297,0 chrXII 113832 . T A 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=122;Dels=0.00;FS=6.201;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.522;QD=22.07;ReadPosRankSum=2.409;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2725,297,0 chrXII 113903 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.01;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3338,363,0 chrXII 114079 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.20;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3119,345,0 chrXII 114214 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.76;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2710,297,0 chrXII 114242 . T C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.766;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.616;QD=21.98;ReadPosRankSum=1.674;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2671,288,0 chrXII 114311 . G T 3055 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.06;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3088,321,0 chrXII 114330 . A G 2975 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.71;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3008,330,0 chrXII 114529 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.67;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3748,402,0 chrXII 114559 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.3694;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.29;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4470,489,0 chrXII 114649 . T C 2056 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.04;FS=0.000;HaplotypeScore=6.3552;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=16.85;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2089,225,0 chrXII 114650 . C T 2101 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=119;Dels=0.00;FS=7.856;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-1.044;QD=17.66;ReadPosRankSum=3.726;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:5,112:119:99:2134,228,0 chrXII 114659 . G A 2154 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.73;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2187,231,0 chrXII 114724 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.42;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3217,342,0 chrXII 114772 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2347;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.41;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3147,339,0 chrXII 114858 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.559;QD=24.38;ReadPosRankSum=1.707;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3437,375,0 chrXII 114988 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=3.031;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.671;QD=24.28;ReadPosRankSum=2.414;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3423,366,0 chrXII 115039 . C G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.18;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3531,375,0 chrXII 115047 . C G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.97;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3284,354,0 chrXII 115108 . T C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.210;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.493;QD=21.31;ReadPosRankSum=1.672;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2505,261,0 chrXII 115183 . C G 2650 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.84;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2683,288,0 chrXII 115271 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.09;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2201,240,0 chrXII 115378 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.60;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2023,219,0 chrXII 115400 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.08;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2402,255,0 chrXII 115469 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.41;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2351,246,0 chrXII 115486 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.29;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2013,216,0 chrXII 115512 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.74;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1879,201,0 chrXII 115585 . T A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.58;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3607,376,0 chrXII 115717 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.21;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2377,258,0 chrXII 115808 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.88;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2994,318,0 chrXII 115940 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.11;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1954,204,0 chrXII 115948 . T C 2074 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.30;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2107,228,0 chrXII 116128 . A G 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.600;QD=22.85;ReadPosRankSum=1.629;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2341,249,0 chrXII 116314 . A G 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.837;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.063;QD=23.09;ReadPosRankSum=2.400;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2319,243,0 chrXII 116337 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.38;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2254,237,0 chrXII 116402 . T A 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.688;QD=24.35;ReadPosRankSum=1.031;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1957,187,0 chrXII 116497 . A T 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.206;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.379;QD=24.90;ReadPosRankSum=1.700;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2722,291,0 chrXII 116524 . A C 2463 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.80;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2496,273,0 chrXII 116680 . T C 3066 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.40;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3099,327,0 chrXII 116686 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.295;QD=21.23;ReadPosRankSum=2.245;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2836,303,0 chrXII 116824 . T G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.096;QD=23.47;ReadPosRankSum=2.356;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3708,414,0 chrXII 116980 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.317;QD=24.26;ReadPosRankSum=0.171;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3494,378,0 chrXII 117391 . G C 3003 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.76;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3036,333,0 chrXII 117460 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.70;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3076,333,0 chrXII 117481 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.19;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2566,279,0 chrXII 117484 . C A 2620 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.30;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2653,273,0 chrXII 117532 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8606;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.05;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2770,297,0 chrXII 117788 . T C 3137 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.90;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3170,342,0 chrXII 117856 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.257;QD=24.09;ReadPosRankSum=1.620;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3044,330,0 chrXII 117952 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2481,270,0 chrXII 118322 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.98;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2655,285,0 chrXII 118337 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.82;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2989,321,0 chrXII 118486 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=2.654;HaplotypeScore=10.4553;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.752;QD=24.11;ReadPosRankSum=2.353;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3664,393,0 chrXII 118640 . G A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.9708;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.70;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4595,487,0 chrXII 119291 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.89;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3918,423,0 chrXII 119330 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.87;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3413,366,0 chrXII 119510 . A C 3089 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3122,330,0 chrXII 120187 . A C 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6431;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.857;QD=24.72;ReadPosRankSum=1.715;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4919,523,0 chrXII 120216 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.65;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4757,499,0 chrXII 120550 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3672,390,0 chrXII 120592 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7837;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.54;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4137,438,0 chrXII 121206 . T G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.597;QD=24.33;ReadPosRankSum=1.674;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2953,312,0 chrXII 121492 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.93;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3269,354,0 chrXII 121537 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.62;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2348,249,0 chrXII 121567 . T A 1747 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.30;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1780,186,0 chrXII 121811 . T G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.022;QD=24.86;ReadPosRankSum=1.688;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:2022,216,0 chrXII 121819 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.311;QD=22.85;ReadPosRankSum=1.592;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1747,189,0 chrXII 122034 . A C 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=75;Dels=0.00;FS=44.022;HaplotypeScore=24.0909;MLEAC=1;MLEAF=0.500;MQ=47.66;MQ0=0;MQRankSum=0.924;QD=2.13;ReadPosRankSum=2.990;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:34,41:75:99:190,0,268 chrXII 122098 . A G 1988 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=25.82;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2021,216,0 chrXII 122138 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.070;QD=20.84;ReadPosRankSum=1.579;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1492,162,0 chrXII 122140 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.81;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1538,159,0 chrXII 122340 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.3071;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.212;QD=21.92;ReadPosRankSum=2.409;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,120:128:99:2839,309,0 chrXII 122353 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.56;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2988,318,0 chrXII 122930 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=170;Dels=0.00;FS=7.865;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.95;ReadPosRankSum=3.799;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:5,163:170:99:4071,366,0 chrXII 124013 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9012;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.85;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4341,477,0 chrXII 124218 . G C 5833.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=21.8635;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.30;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5833,631,0 chrXII 124421 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=254;Dels=0.00;FS=7.417;HaplotypeScore=18.0327;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.946;QD=17.93;ReadPosRankSum=2.420;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:4553,495,0 chrXII 124642 . G T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3866,400,0 chrXII 125128 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.80;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2927,303,0 chrXII 125849 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=6.158;HaplotypeScore=12.7859;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.022;QD=22.93;ReadPosRankSum=1.711;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3714,390,0 chrXII 126014 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=109;Dels=0.00;FS=6.229;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.010;QD=22.61;ReadPosRankSum=0.360;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,104:109:99:2497,276,0 chrXII 126203 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.9439;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.44;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3725,417,0 chrXII 126664 . A C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.51;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4412,483,0 chrXII 126691 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.05;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4241,442,0 chrXII 126722 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.7878;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.429;QD=22.34;ReadPosRankSum=1.696;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4378,468,0 chrXII 126934 . C T 5802.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.0193;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.07;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5802,625,0 chrXII 127006 . G A 5333.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3625;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.02;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5333,579,0 chrXII 127219 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.49;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2979,321,0 chrXII 127234 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.335;QD=21.90;ReadPosRankSum=1.703;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2639,282,0 chrXII 127407 . A T 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.01;FS=4.942;HaplotypeScore=73.2863;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.577;QD=0.61;ReadPosRankSum=1.688;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:9:80,9,0 chrXII 127478 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.88;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2121,222,0 chrXII 127487 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.285;QD=20.71;ReadPosRankSum=2.940;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2456,258,0 chrXII 127531 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.731;DP=143;Dels=0.00;FS=4.698;HaplotypeScore=13.7415;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.511;QD=21.43;ReadPosRankSum=3.786;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:5,138:143:99:3098,342,0 chrXII 129090 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.84;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1312,135,0 chrXII 129764 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4342,460,0 chrXII 130209 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=254;Dels=0.00;FS=5.120;HaplotypeScore=25.1131;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.073;QD=17.28;ReadPosRankSum=3.419;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:4,248:254:99:4389,469,0 chrXII 130827 . G C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.6894;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=23.46;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4715,505,0 chrXII 131340 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=3.492;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.737;QD=23.45;ReadPosRankSum=1.675;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4244,459,0 chrXII 131404 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.94;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3945,412,0 chrXII 132253 . G A 2031 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=195;Dels=0.02;FS=3.527;HaplotypeScore=142.6897;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.362;QD=10.42;ReadPosRankSum=-9.610;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:64,127:192:99:2064,222,0 chrXII 132256 . G A 1020.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;DP=189;Dels=0.02;FS=3.609;HaplotypeScore=142.6897;MLEAC=1;MLEAF=0.500;MQ=53.24;MQ0=0;MQRankSum=1.192;QD=5.40;ReadPosRankSum=-3.751;SB=-5.000e+02 GT:AD:DP:GQ:PL 0/1:125,61:186:99:1050,0,1501 chrXII 132260 . A G 3179 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=148.3070;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=16.22;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3212,351,0 chrXII 132610 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2512;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3549,390,0 chrXII 133123 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.47;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2568,270,0 chrXII 133678 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.50;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4385,457,0 chrXII 134351 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.088;QD=23.92;ReadPosRankSum=1.652;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2090,228,0 chrXII 134767 . A G 5156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=213;Dels=0.00;FS=7.332;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.076;QD=24.21;ReadPosRankSum=2.380;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:5156,550,0 chrXII 135031 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3999,438,0 chrXII 136315 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.01;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3819,411,0 chrXII 138124 . G C 3027 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3060,327,0 chrXII 139755 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1519,165,0 chrXII 140157 . T A 2795 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2828,297,0 chrXII 141135 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.55;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:5008,517,0 chrXII 141390 . C T 4864.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.16;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4864,505,0 chrXII 141900 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2555,267,0 chrXII 143434 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.16;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1762,189,0 chrXII 143539 . C G 2356 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2389,258,0 chrXII 144379 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2621,276,0 chrXII 144822 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.81;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4168,436,0 chrXII 145067 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.82;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4393,463,0 chrXII 145780 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.20;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3847,411,0 chrXII 148549 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.633;QD=23.13;ReadPosRankSum=1.633;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4070,447,0 chrXII 150352 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=24.75;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2434,258,0 chrXII 150435 . T A 1621 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=24.94;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1654,174,0 chrXII 150544 . C T 176.03 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.2691;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=2.59;SB=-8.604e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:24:209,24,0 chrXII 150780 . T C 1355 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=23.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1388,150,0 chrXII 150960 . G T 397 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.89;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:430,45,0 chrXII 150969 . T C 437 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.21;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:54:470,54,0 chrXII 151308 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.78;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2910,318,0 chrXII 151453 . G C 3053 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.23;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3086,327,0 chrXII 152313 . A G 2929 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2962,315,0 chrXII 152571 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3022,330,0 chrXII 152803 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3513,367,0 chrXII 153157 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2325,249,0 chrXII 155191 . G T 2337 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2370,249,0 chrXII 155570 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.52;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2662,279,0 chrXII 159671 . C G 4333.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.77;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4333,471,0 chrXII 160954 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3394,363,0 chrXII 163451 . A G 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.425;DP=249;Dels=0.00;FS=8.872;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.612;QD=22.51;ReadPosRankSum=3.334;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:4,243:249:99:5605,609,0 chrXII 165469 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3561,384,0 chrXII 167521 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3372,360,0 chrXII 167640 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5140;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.36;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3785,408,0 chrXII 167685 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.4708;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.477;QD=22.83;ReadPosRankSum=1.690;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3812,420,0 chrXII 167737 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2734,300,0 chrXII 168055 . A G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=90;Dels=0.00;FS=2.704;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.616;QD=22.47;ReadPosRankSum=2.368;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2055,219,0 chrXII 168149 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.30;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2340,246,0 chrXII 168169 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.69;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1984,216,0 chrXII 168351 . G T 2155 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.45;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2188,234,0 chrXII 168352 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.37;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2203,237,0 chrXII 168539 . C A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.89;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3297,340,0 chrXII 168863 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.375;QD=24.45;ReadPosRankSum=1.685;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3618,396,0 chrXII 169203 . T A 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=174;Dels=0.00;FS=6.097;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.728;QD=21.38;ReadPosRankSum=2.913;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3720,388,0 chrXII 169210 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.99;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3738,396,0 chrXII 169633 . C T 4970.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.69;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4970,508,0 chrXII 169932 . A G 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=83;Dels=0.00;FS=7.219;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.286;QD=23.30;ReadPosRankSum=2.390;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1967,213,0 chrXII 169985 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.05;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2342,246,0 chrXII 170000 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=9.731;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.179;QD=22.22;ReadPosRankSum=1.658;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2122,234,0 chrXII 170342 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=19.17;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2429,255,0 chrXII 170356 . G T 2344 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=17.36;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2377,252,0 chrXII 170369 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=16.14;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2147,231,0 chrXII 170370 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=15.85;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2078,231,0 chrXII 170429 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.64;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2654,288,0 chrXII 170730 . T C 82.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-0.385;QD=4.58;ReadPosRankSum=1.156;SB=-1.125e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:12:115,12,0 chrXII 170741 . A G 190.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=18.8233;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=9.50;SB=-8.404e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:24:223,24,0 chrXII 170816 . A G 604 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=35;Dels=0.00;FS=15.315;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=-1.529;QD=17.26;ReadPosRankSum=1.631;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,33:35:66:637,66,0 chrXII 170821 . A G 498 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=13.11;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:60:531,60,0 chrXII 170859 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.82;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1224,129,0 chrXII 170932 . T A 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=1.267;QD=25.04;ReadPosRankSum=1.681;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1711,186,0 chrXII 170937 . C A 1716 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=24.87;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1749,180,0 chrXII 170963 . A G 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=1.627;QD=23.86;ReadPosRankSum=1.680;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1608,174,0 chrXII 171013 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.45;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1745,192,0 chrXII 171038 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.08;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1903,198,0 chrXII 171076 . T G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.996;QD=19.17;ReadPosRankSum=1.671;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2237,231,0 chrXII 171251 . C G 2781 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.23;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2814,309,0 chrXII 171335 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.22;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2843,309,0 chrXII 171765 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.34;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2288,240,0 chrXII 171787 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=70;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.968;QD=22.50;ReadPosRankSum=-1.477;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1608,164,0 chrXII 171872 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.619;QD=23.16;ReadPosRankSum=1.670;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1330,144,0 chrXII 171935 . A T 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=41.3820;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.530;QD=21.76;ReadPosRankSum=1.662;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1099,111,0 chrXII 172053 . C T 126.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=8.41;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:159,18,0 chrXII 172080 . G A 492 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.97;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:525,57,0 chrXII 172105 . G A 724 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:81:757,81,0 chrXII 172316 . A G 2745 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.87;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2778,297,0 chrXII 173841 . C G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7493;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.93;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3291,351,0 chrXII 173892 . A T 3111 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.89;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3144,324,0 chrXII 174938 . A C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.046;QD=23.47;ReadPosRankSum=1.699;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2544,273,0 chrXII 175138 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.17;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2250,249,0 chrXII 175158 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=14.43;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2357,258,0 chrXII 175160 . A G 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=5.374;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-0.599;QD=14.11;ReadPosRankSum=1.689;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2333,255,0 chrXII 175187 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=13.42;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2449,249,0 chrXII 175203 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=12.39;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:2363,249,0 chrXII 175207 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=12.41;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2291,240,0 chrXII 175382 . C A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=24.19;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,240:245:99:5927,637,0 chrXII 175892 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.00;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3336,345,0 chrXII 175946 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=7.006;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-2.195;QD=22.18;ReadPosRankSum=2.314;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,143:148:99:3283,348,0 chrXII 175979 . T C 3061 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.84;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3094,330,0 chrXII 176084 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=145;Dels=0.00;FS=9.214;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.840;QD=23.94;ReadPosRankSum=2.924;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3472,378,0 chrXII 176153 . C A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.0861;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.58;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3663,402,0 chrXII 176285 . A T 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.872;QD=25.38;ReadPosRankSum=1.619;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3883,406,0 chrXII 176348 . G T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=10.0853;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.47;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3779,399,0 chrXII 176423 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.114;HaplotypeScore=10.6582;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.426;QD=22.74;ReadPosRankSum=1.712;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3865,429,0 chrXII 176833 . T G 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=203;Dels=0.00;FS=5.319;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.193;QD=23.26;ReadPosRankSum=2.936;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4722,502,0 chrXII 176939 . C T 5312.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.20;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5312,559,0 chrXII 177042 . A G 6095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=271;Dels=0.00;FS=6.676;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.588;QD=22.49;ReadPosRankSum=2.395;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:2,267:271:99:6095,681,0 chrXII 177754 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.93;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4905,537,0 chrXII 177778 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.50;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4865,519,0 chrXII 178408 . A G 6733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=13.5198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.257;QD=21.86;ReadPosRankSum=1.698;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:1,305:307:99:6733,738,0 chrXII 178655 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.82;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3574,375,0 chrXII 178813 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=26.75;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4735,502,0 chrXII 178944 . C T 6067.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.72;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6067,634,0 chrXII 178986 . A G 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.7431;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.953;QD=22.80;ReadPosRankSum=1.689;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5518,592,0 chrXII 179029 . A G 5361.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.01;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5361,568,0 chrXII 179034 . A G 5175.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.60;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5175,558,0 chrXII 179121 . G T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.2200;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.45;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4332,457,0 chrXII 179135 . A G 4370.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.41;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4370,463,0 chrXII 179159 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.20;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4494,481,0 chrXII 179190 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.72;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4713,493,0 chrXII 179265 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.89;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5013,540,0 chrXII 179276 . A C 4837.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.82;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4837,519,0 chrXII 179683 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=22.53;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1047,111,0 chrXII 179755 . T A 170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=24;Dels=0.00;FS=5.653;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.975;QD=7.08;ReadPosRankSum=2.517;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:4,20:24:27:203,27,0 chrXII 179807 . T A 714 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.83;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:747,78,0 chrXII 179815 . T A 714 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.83;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:747,78,0 chrXII 179828 . G T 811 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.79;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:844,87,0 chrXII 179876 . A T 713 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.61;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:746,78,0 chrXII 179902 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.70;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:988,108,0 chrXII 180683 . T C 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=216;Dels=0.00;FS=3.025;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.511;QD=22.44;ReadPosRankSum=2.346;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4848,537,0 chrXII 180796 . G A 5456.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.04;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5456,571,0 chrXII 180860 . T C 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.229;HaplotypeScore=11.2453;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.747;QD=22.79;ReadPosRankSum=1.715;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4671,510,0 chrXII 182125 . A G 3090 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.14;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3123,339,0 chrXII 182506 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.101;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.268;QD=22.28;ReadPosRankSum=1.714;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4345,483,0 chrXII 182746 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=3.267;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.856;QD=23.74;ReadPosRankSum=1.692;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4131,444,0 chrXII 182854 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4554,478,0 chrXII 182953 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.80;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3685,385,0 chrXII 183178 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.65;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4157,447,0 chrXII 183187 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=3.019;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.833;QD=21.15;ReadPosRankSum=2.411;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4103,450,0 chrXII 183316 . T A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.51;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4607,487,0 chrXII 183669 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4358;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.84;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4702,493,0 chrXII 183745 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.780;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.039;QD=24.96;ReadPosRankSum=1.710;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3993,426,0 chrXII 183955 . G A 5954.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.1993;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.34;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5954,660,0 chrXII 184322 . C A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3297,354,0 chrXII 184390 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.34;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3479,375,0 chrXII 184414 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.01;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3750,385,0 chrXII 186045 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.076;DP=208;Dels=0.00;FS=7.450;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.995;QD=22.63;ReadPosRankSum=4.125;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:6,199:208:99:4708,513,0 chrXII 187694 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6927;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.24;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4752,499,0 chrXII 188317 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.246;QD=25.75;ReadPosRankSum=1.702;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2968,312,0 chrXII 188360 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3201,328,0 chrXII 188851 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1248,138,0 chrXII 189019 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.45;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1940,204,0 chrXII 189316 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3432,360,0 chrXII 189389 . T G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.943;HaplotypeScore=11.2515;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.602;QD=21.23;ReadPosRankSum=2.363;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3631,384,0 chrXII 189603 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=6.737;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.358;QD=23.62;ReadPosRankSum=2.421;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4062,433,0 chrXII 189814 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.34;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4108,453,0 chrXII 189835 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.67;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3967,426,0 chrXII 190161 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.28;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2218,231,0 chrXII 190180 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.46;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2212,234,0 chrXII 190285 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.27;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3091,324,0 chrXII 190353 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.903;QD=24.77;ReadPosRankSum=1.708;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3542,390,0 chrXII 190522 . G A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5746,601,0 chrXII 190914 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.95;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3242,342,0 chrXII 190942 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=135;Dels=0.00;FS=14.635;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.694;QD=24.39;ReadPosRankSum=3.290;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:3293,351,0 chrXII 191572 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.706;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.322;QD=24.14;ReadPosRankSum=1.712;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4103,456,0 chrXII 191671 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.67;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3491,366,0 chrXII 192058 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3050,333,0 chrXII 193699 . A G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2358;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.14;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4374,474,0 chrXII 193746 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.56;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3770,399,0 chrXII 194047 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=182;Dels=0.00;FS=6.437;HaplotypeScore=8.9998;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.235;QD=22.99;ReadPosRankSum=2.423;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4185,447,0 chrXII 194178 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4529;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.44;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3520,369,0 chrXII 194179 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6642;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.67;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3432,375,0 chrXII 194235 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=136;Dels=0.00;FS=2.917;HaplotypeScore=8.8316;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.175;QD=21.23;ReadPosRankSum=2.395;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2920,312,0 chrXII 194272 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.52;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2917,309,0 chrXII 194277 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.477;QD=19.62;ReadPosRankSum=1.681;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2721,294,0 chrXII 194287 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.074;QD=19.84;ReadPosRankSum=1.633;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2811,303,0 chrXII 194407 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.4223;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.99;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3584,381,0 chrXII 194414 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.87;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3630,381,0 chrXII 194691 . A G 5253.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.84;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5253,582,0 chrXII 194811 . C T 6476.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.7316;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.70;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6476,667,0 chrXII 195525 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.41;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2376,249,0 chrXII 196744 . T C 306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.344;DP=38;Dels=0.00;FS=12.441;HaplotypeScore=27.4398;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=2.192;QD=8.05;ReadPosRankSum=1.014;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:5,31:38:39:339,39,0 chrXII 196753 . T A 176.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;DP=32;Dels=0.00;FS=17.229;HaplotypeScore=15.2956;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=0.224;QD=5.51;ReadPosRankSum=2.338;SB=-1.814e+02 GT:AD:DP:GQ:PL 0/1:10,22:32:11:206,0,11 chrXII 196845 . A G 2233 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.68;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2266,237,0 chrXII 196849 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.610;QD=23.21;ReadPosRankSum=1.699;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2470,261,0 chrXII 196991 . T C 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=190;Dels=0.00;FS=2.562;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.370;QD=24.85;ReadPosRankSum=2.942;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4721,505,0 chrXII 197186 . G C 6143.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=22.0461;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.84;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:6143,675,0 chrXII 197801 . A C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=4.539;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.057;QD=25.89;ReadPosRankSum=1.713;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4737,513,0 chrXII 198205 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.5641;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.065;QD=21.74;ReadPosRankSum=1.716;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4653,513,0 chrXII 198396 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4243;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=23.87;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3819,411,0 chrXII 198410 . A T 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=139;Dels=0.00;FS=5.495;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.080;QD=21.36;ReadPosRankSum=2.950;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3002,327,0 chrXII 198428 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.19;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2651,276,0 chrXII 198484 . A C 2162 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.84;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2195,237,0 chrXII 198577 . G C 2074 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.06;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2107,225,0 chrXII 198620 . A T 1636 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=18.80;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1669,180,0 chrXII 198624 . T C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-1.289;QD=20.67;ReadPosRankSum=1.611;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1811,192,0 chrXII 198744 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.79;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2125,216,0 chrXII 198756 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.76;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2134,225,0 chrXII 199043 . A G 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.691;QD=19.60;ReadPosRankSum=1.691;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:4960,552,0 chrXII 199425 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.81;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4274,445,0 chrXII 199439 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.34;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4075,418,0 chrXII 199528 . A G 5153.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.8074;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.38;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5153,550,0 chrXII 200137 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3528,381,0 chrXII 200350 . A G 4650.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4650,507,0 chrXII 200465 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.1987;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.51;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4891,514,0 chrXII 200620 . G A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.5910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4780,496,0 chrXII 200917 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3048,330,0 chrXII 201013 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4054,447,0 chrXII 201288 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.8840;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.536;QD=23.01;ReadPosRankSum=1.714;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4486,475,0 chrXII 201354 . T G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=171;Dels=0.00;FS=7.921;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.955;QD=23.57;ReadPosRankSum=2.406;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4030,429,0 chrXII 201654 . A G 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.162;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.210;QD=23.25;ReadPosRankSum=1.637;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1730,189,0 chrXII 201658 . T G 1635 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.36;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1668,180,0 chrXII 201727 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=57;Dels=0.00;FS=5.328;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=2.320;QD=19.79;ReadPosRankSum=-0.976;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:88:1161,88,0 chrXII 201879 . G T 759 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.65;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:792,84,0 chrXII 202093 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=25.43;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3688,405,0 chrXII 202134 . C T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.91;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4514,498,0 chrXII 202261 . G A 5449.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=23.19;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5449,574,0 chrXII 202651 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.16;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2094,216,0 chrXII 202775 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=23.24;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2032,222,0 chrXII 202861 . G C 2410 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=16.28;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2443,264,0 chrXII 202872 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=15.11;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2421,267,0 chrXII 202888 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=14.44;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2503,261,0 chrXII 202895 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=175;Dels=0.00;FS=7.884;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-1.027;QD=13.65;ReadPosRankSum=1.712;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,171:175:99:2421,258,0 chrXII 202961 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=15.40;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1958,201,0 chrXII 202970 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=107.7154;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=16.49;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2045,210,0 chrXII 202991 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=13.58;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1636,177,0 chrXII 202999 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=13.82;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1650,186,0 chrXII 203174 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=112;Dels=0.00;FS=5.407;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=1.973;QD=21.40;ReadPosRankSum=2.937;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2430,261,0 chrXII 203202 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=104;Dels=0.00;FS=5.785;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-2.571;QD=22.43;ReadPosRankSum=2.871;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:3,98:104:99:2366,258,0 chrXII 203251 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=18.83;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2462,276,0 chrXII 203254 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.226;QD=20.20;ReadPosRankSum=1.705;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2659,288,0 chrXII 203651 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.512;QD=24.66;ReadPosRankSum=1.683;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3526,381,0 chrXII 203682 . C G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.03;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3379,354,0 chrXII 203732 . T A 2853 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.81;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2886,303,0 chrXII 203753 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.68;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2851,303,0 chrXII 203834 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=148;Dels=0.00;FS=3.101;HaplotypeScore=14.6935;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.206;QD=24.30;ReadPosRankSum=1.684;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3597,381,0 chrXII 203895 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.79;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3421,369,0 chrXII 204074 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.66;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2629,291,0 chrXII 204264 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.64;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3524,372,0 chrXII 204524 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=2.985;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.639;QD=21.74;ReadPosRankSum=2.392;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2838,312,0 chrXII 204536 . G A 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=3.702;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.013;QD=22.27;ReadPosRankSum=-0.389;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2906,279,0 chrXII 204555 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.88;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2768,291,0 chrXII 204575 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.359;QD=19.36;ReadPosRankSum=1.701;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2182,237,0 chrXII 204809 . T A 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.109;QD=22.08;ReadPosRankSum=1.654;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1998,219,0 chrXII 204907 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.501;QD=24.99;ReadPosRankSum=2.322;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3399,366,0 chrXII 204960 . A G 2819 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.73;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2852,303,0 chrXII 204962 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=21.90;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2990,318,0 chrXII 204986 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3272;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.48;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3695,402,0 chrXII 205059 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.12;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3956,420,0 chrXII 205180 . G T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=22.10;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3447,363,0 chrXII 205188 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.06;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3086,339,0 chrXII 205266 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.175;QD=25.51;ReadPosRankSum=1.693;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4540,486,0 chrXII 205361 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.069;QD=22.58;ReadPosRankSum=1.708;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3217,339,0 chrXII 205368 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.10;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3127,333,0 chrXII 205422 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.73;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3060,318,0 chrXII 205460 . T A 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=2.960;HaplotypeScore=5.0120;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.817;QD=22.41;ReadPosRankSum=2.223;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3407,357,0 chrXII 205464 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3225;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.72;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3362,351,0 chrXII 205480 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=2.775;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.370;QD=22.83;ReadPosRankSum=2.403;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3584,390,0 chrXII 205872 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=3.040;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.286;QD=25.52;ReadPosRankSum=2.277;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3649,387,0 chrXII 205974 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=7.065;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.658;QD=24.19;ReadPosRankSum=2.402;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3750,411,0 chrXII 206144 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.795;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.405;QD=20.90;ReadPosRankSum=1.705;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2687,297,0 chrXII 206153 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.540;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.505;QD=21.09;ReadPosRankSum=1.675;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2648,279,0 chrXII 206464 . T A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4502,489,0 chrXII 206894 . C A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.85;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5045,538,0 chrXII 207274 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.51;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3089,327,0 chrXII 207288 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.49;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2875,309,0 chrXII 207372 . T C 3071 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2722;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.25;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3104,330,0 chrXII 207426 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.24;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2984,318,0 chrXII 207537 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.04;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3074,318,0 chrXII 207684 . A C 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.419;QD=23.83;ReadPosRankSum=1.704;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3035,324,0 chrXII 207885 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.64;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3671,387,0 chrXII 207990 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2769,297,0 chrXII 208218 . G T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.36;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4628,484,0 chrXII 208290 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.76;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4998,517,0 chrXII 208353 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3582,387,0 chrXII 208601 . C A 2115 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=24.03;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2148,225,0 chrXII 208651 . G A 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DP=82;Dels=0.00;FS=8.175;HaplotypeScore=61.5315;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=1.797;QD=17.44;ReadPosRankSum=0.226;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:99:1463,109,0 chrXII 208751 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.25;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1614,174,0 chrXII 208796 . T C 1264 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.79;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1297,138,0 chrXII 208797 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.71;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1292,138,0 chrXII 209405 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2418,261,0 chrXII 209540 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.06;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3392,372,0 chrXII 209708 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=3.028;HaplotypeScore=14.3880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.336;QD=24.29;ReadPosRankSum=2.422;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4372,474,0 chrXII 209799 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2811;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.46;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4575,507,0 chrXII 209847 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.65;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3997,435,0 chrXII 210023 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.24;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3264,351,0 chrXII 210043 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.27;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2904,309,0 chrXII 210102 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.69;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3255,345,0 chrXII 210476 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.13;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3568,378,0 chrXII 210527 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=24.47;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3621,376,0 chrXII 210539 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=4.008;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.585;QD=23.43;ReadPosRankSum=1.709;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3538,375,0 chrXII 210560 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.126;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.866;QD=20.92;ReadPosRankSum=1.687;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3213,345,0 chrXII 210572 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.46;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3266,339,0 chrXII 210638 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.789;QD=19.07;ReadPosRankSum=1.713;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3452,375,0 chrXII 210644 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.05;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3789,396,0 chrXII 210793 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=24.50;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3528,372,0 chrXII 211019 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=23.78;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4019,418,0 chrXII 211028 . T A 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=0.368;QD=23.02;ReadPosRankSum=1.710;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3683,390,0 chrXII 211045 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.417;QD=21.33;ReadPosRankSum=1.711;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3583,381,0 chrXII 211130 . A C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.165;HaplotypeScore=12.3308;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.027;QD=23.30;ReadPosRankSum=1.712;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,171:176:99:4101,447,0 chrXII 211190 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0706;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.26;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4140,456,0 chrXII 211217 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4229;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=23.47;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3872,397,0 chrXII 211226 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=6.490;HaplotypeScore=9.2033;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.705;QD=21.65;ReadPosRankSum=2.222;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3508,366,0 chrXII 211592 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=152;Dels=0.00;FS=2.745;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.884;QD=23.09;ReadPosRankSum=2.353;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3509,378,0 chrXII 211658 . A C 3110 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.04;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3143,342,0 chrXII 212026 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1733,189,0 chrXII 212081 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.15;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1978,204,0 chrXII 212683 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3365,354,0 chrXII 212873 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=3.007;HaplotypeScore=8.0816;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.736;QD=23.23;ReadPosRankSum=2.375;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3100,327,0 chrXII 213037 . T C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.0576;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.754;QD=21.18;ReadPosRankSum=1.706;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2850,312,0 chrXII 213069 . C G 2834 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.80;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2867,303,0 chrXII 213226 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=139;Dels=0.00;FS=6.033;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.544;QD=22.91;ReadPosRankSum=2.877;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3217,351,0 chrXII 213278 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.39;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2663,279,0 chrXII 213307 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.74;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2244,237,0 chrXII 213308 . G T 2212 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=18.59;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2245,237,0 chrXII 213334 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.97;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2789,288,0 chrXII 213413 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.8981;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.06;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2670,279,0 chrXII 213421 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.458;QD=19.16;ReadPosRankSum=2.392;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2504,267,0 chrXII 213659 . T C 2343 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.75;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2376,252,0 chrXII 213996 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=9.847;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.831;QD=23.50;ReadPosRankSum=2.303;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2783,303,0 chrXII 214228 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=162;Dels=0.00;FS=12.765;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.798;QD=22.78;ReadPosRankSum=3.329;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3690,411,0 chrXII 214283 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.99;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3968,429,0 chrXII 214310 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.92;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3598,399,0 chrXII 214500 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=24.46;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3473,363,0 chrXII 214592 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5281;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.68;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3481,369,0 chrXII 214673 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=6.925;HaplotypeScore=8.5015;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;MQRankSum=-1.965;QD=18.47;ReadPosRankSum=2.414;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2564,273,0 chrXII 214692 . T A 1318 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.04;FS=0.000;HaplotypeScore=1.9874;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=11.08;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1351,156,0 chrXII 214693 . G A 1238 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;QD=10.67;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1271,153,0 chrXII 214696 . A G 1220 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=125;Dels=0.00;FS=7.269;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=1.342;QD=9.76;ReadPosRankSum=3.597;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:5,120:125:99:1253,132,0 chrXII 214703 . T C 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;QD=12.75;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1665,177,0 chrXII 214706 . T A 1759 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=14.54;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1792,186,0 chrXII 214730 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.9385;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=13.61;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1816,192,0 chrXII 214737 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=2.966;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;MQRankSum=0.063;QD=13.48;ReadPosRankSum=2.413;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:1880,204,0 chrXII 214840 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=6.5632;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=1.220;QD=24.99;ReadPosRankSum=1.708;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3573,384,0 chrXII 214850 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=133;Dels=0.00;FS=7.679;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=0.369;QD=23.01;ReadPosRankSum=2.393;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:3093,339,0 chrXII 214867 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;MQRankSum=-0.674;QD=23.62;ReadPosRankSum=1.708;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3401,372,0 chrXII 215008 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=23.61;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2158,234,0 chrXII 221188 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=20.74;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1962,213,0 chrXII 221190 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=20.12;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1824,198,0 chrXII 221368 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=3.038;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-1.652;QD=20.90;ReadPosRankSum=2.417;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3189,342,0 chrXII 221376 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=9.379;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-0.204;QD=20.71;ReadPosRankSum=2.954;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3201,345,0 chrXII 221392 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=22.67;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3605,375,0 chrXII 221668 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.842;QD=25.62;ReadPosRankSum=1.708;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3689,393,0 chrXII 222046 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1599,168,0 chrXII 222430 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2440,258,0 chrXII 223258 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.78;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3642,387,0 chrXII 223519 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=26.38;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4854,517,0 chrXII 223716 . A C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.1646;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-0.720;QD=21.51;ReadPosRankSum=1.713;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3828,402,0 chrXII 223719 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=180;Dels=0.00;FS=5.896;HaplotypeScore=3.5873;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;MQRankSum=-0.102;QD=19.72;ReadPosRankSum=2.622;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3549,390,0 chrXII 223732 . T A 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=3.729;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-0.949;QD=19.67;ReadPosRankSum=1.713;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3481,369,0 chrXII 223770 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.29;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:3733,385,0 chrXII 223775 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.967;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.389;QD=18.74;ReadPosRankSum=1.713;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3448,375,0 chrXII 223880 . G A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=1;QD=25.86;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4371,460,0 chrXII 223946 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.92;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4186,465,0 chrXII 224006 . G A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4952;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=25.51;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4846,505,0 chrXII 224058 . T C 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=3.032;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.908;QD=24.38;ReadPosRankSum=2.422;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4389,466,0 chrXII 224095 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=162;Dels=0.00;FS=5.742;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.294;QD=23.75;ReadPosRankSum=2.931;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3848,403,0 chrXII 224139 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.03;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3878,406,0 chrXII 224193 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=19.77;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3658,387,0 chrXII 224218 . T A 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=4.113;HaplotypeScore=5.3144;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.367;QD=17.73;ReadPosRankSum=1.711;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2958,309,0 chrXII 224232 . A T 2778 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=17.47;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2811,294,0 chrXII 224233 . C T 2595 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=16.42;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2628,291,0 chrXII 224239 . G A 2565 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=16.23;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2598,276,0 chrXII 224592 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1521,165,0 chrXII 224760 . C T 826 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.60;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:859,87,0 chrXII 225041 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.78;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2734,291,0 chrXII 225226 . T C 2126 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.05;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2159,234,0 chrXII 225235 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.42;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1839,198,0 chrXII 225676 . G C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.60;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3256,348,0 chrXII 225795 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=6.185;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.872;QD=25.13;ReadPosRankSum=2.376;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3368,366,0 chrXII 225831 . T G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=3.606;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.673;QD=24.63;ReadPosRankSum=1.643;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2964,315,0 chrXII 225921 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.45;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3350,348,0 chrXII 225953 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.15;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2931,312,0 chrXII 225993 . A T 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=3.033;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.335;QD=23.98;ReadPosRankSum=2.398;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2311,240,0 chrXII 226119 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.0949;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.238;QD=24.63;ReadPosRankSum=1.709;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3768,399,0 chrXII 226142 . G T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.38;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3535,364,0 chrXII 226242 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.05;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2430,264,0 chrXII 226438 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.48;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2475,264,0 chrXII 226560 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.844;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.137;QD=22.07;ReadPosRankSum=1.705;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2836,315,0 chrXII 226566 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.40;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2810,309,0 chrXII 226728 . C A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.14;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:4148,439,0 chrXII 226803 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.72;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2918,300,0 chrXII 226806 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.34;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2779,306,0 chrXII 227193 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.73;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2170,237,0 chrXII 227328 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.16;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2087,216,0 chrXII 227856 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2702,294,0 chrXII 228126 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.57;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2883,297,0 chrXII 228201 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.46;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4481,472,0 chrXII 228303 . T C 5455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.4489;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.191;QD=23.93;ReadPosRankSum=1.717;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5455,591,0 chrXII 228348 . T C 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=249;Dels=0.00;FS=9.243;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.641;QD=23.14;ReadPosRankSum=2.948;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5763,639,0 chrXII 228420 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.4156;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.91;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4720,496,0 chrXII 228510 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2477;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.018;QD=19.73;ReadPosRankSum=1.697;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3927,423,0 chrXII 228527 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.2498;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.415;QD=18.12;ReadPosRankSum=2.931;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:3,158:164:99:3004,324,0 chrXII 228807 . C T 656 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:72:689,72,0 chrXII 228889 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.786;QD=25.27;ReadPosRankSum=2.387;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:2004,213,0 chrXII 229120 . T G 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=232;Dels=0.00;FS=2.655;HaplotypeScore=4.3033;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.430;QD=21.12;ReadPosRankSum=2.024;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4900,543,0 chrXII 229136 . T G 4877.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.48;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4877,520,0 chrXII 229166 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=215;Dels=0.00;FS=5.847;HaplotypeScore=12.1170;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.098;QD=19.24;ReadPosRankSum=2.939;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4136,450,0 chrXII 229358 . G A 5326.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.7972;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.36;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5326,559,0 chrXII 229498 . A T 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.808;QD=23.52;ReadPosRankSum=2.369;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4327,465,0 chrXII 229560 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.48;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3378,357,0 chrXII 229597 . T G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.77;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3492,375,0 chrXII 229618 . T C 3157 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.39;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3190,336,0 chrXII 229623 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.630;QD=23.35;ReadPosRankSum=1.680;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3138,330,0 chrXII 230005 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=26.70;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2009,213,0 chrXII 230210 . G A 3495.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.4533;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.80;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3495,375,0 chrXII 230212 . A G 3446.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0306;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.170;QD=20.51;ReadPosRankSum=2.139;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3446,352,0 chrXII 230218 . G A 3367.01 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.24;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3367,378,0 chrXII 230960 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.371;QD=22.82;ReadPosRankSum=1.702;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2657,294,0 chrXII 231004 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=146;Dels=0.00;FS=2.974;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.901;QD=23.35;ReadPosRankSum=2.315;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3409,363,0 chrXII 231281 . A T 1847 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.99;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1880,198,0 chrXII 231304 . T A 1677 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.03;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1710,186,0 chrXII 231307 . C A 1837 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.75;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1870,195,0 chrXII 231400 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.472;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.954;QD=25.22;ReadPosRankSum=1.697;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2505,264,0 chrXII 231434 . T G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.933;QD=25.09;ReadPosRankSum=1.694;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2316,246,0 chrXII 231692 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.86;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2817,303,0 chrXII 232046 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-1.184;QD=23.80;ReadPosRankSum=1.707;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3308,363,0 chrXII 232063 . G T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=24.41;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3418,355,0 chrXII 232208 . C T 1690 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=9.9290;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=16.73;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1723,180,0 chrXII 232216 . G A 1478 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;QD=16.24;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1511,165,0 chrXII 232217 . T G 1357 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;MQRankSum=1.542;QD=14.91;ReadPosRankSum=1.656;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1390,153,0 chrXII 232561 . A G 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.959;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.85;ReadPosRankSum=1.667;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5152,564,0 chrXII 234114 . G T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.48;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4284,454,0 chrXII 234378 . G C 2174 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2207,246,0 chrXII 234762 . G C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.43;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3632,384,0 chrXII 234767 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.73;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3655,387,0 chrXII 234824 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.78;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3148,324,0 chrXII 235352 . C T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.77;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5464,568,0 chrXII 235370 . G A 5461.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.66;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5461,571,0 chrXII 235709 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4341,462,0 chrXII 235798 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.40;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3937,409,0 chrXII 235891 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.65;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4141,430,0 chrXII 235940 . G C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3311,351,0 chrXII 236611 . T A 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.587;QD=25.45;ReadPosRankSum=1.684;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3640,379,0 chrXII 236662 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3745,394,0 chrXII 236698 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.576;QD=24.25;ReadPosRankSum=2.388;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3904,414,0 chrXII 236872 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.9653;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.02;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3573,375,0 chrXII 237225 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.404;HaplotypeScore=11.8857;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.672;QD=24.40;ReadPosRankSum=1.392;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4221,436,0 chrXII 237465 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.82;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5387,571,0 chrXII 237577 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.5222;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.60;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3220,336,0 chrXII 237671 . C A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4008,421,0 chrXII 237728 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.47;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2427,258,0 chrXII 237814 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2312;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.51;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2925,321,0 chrXII 237982 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.219;QD=22.56;ReadPosRankSum=1.698;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2357,252,0 chrXII 238148 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.50;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2924,315,0 chrXII 238301 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.70;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3984,418,0 chrXII 238370 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3762,411,0 chrXII 238466 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=162;Dels=0.00;FS=10.128;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.808;QD=22.59;ReadPosRankSum=2.833;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3660,399,0 chrXII 238861 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.01;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4226,456,0 chrXII 238919 . G C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.66;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3331,363,0 chrXII 239186 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=114;Dels=0.00;FS=2.950;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.688;QD=20.75;ReadPosRankSum=2.406;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2398,270,0 chrXII 239804 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4210,447,0 chrXII 239950 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3799,394,0 chrXII 240031 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.96;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3306,360,0 chrXII 240159 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.58;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2957,309,0 chrXII 240793 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.47;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4942,514,0 chrXII 241011 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.76;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3968,412,0 chrXII 241842 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.26;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3051,345,0 chrXII 241849 . T A 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.110;QD=21.45;ReadPosRankSum=1.688;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3346,354,0 chrXII 241905 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.57;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4266,454,0 chrXII 242101 . C G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=18.4428;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.84;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4042,444,0 chrXII 242737 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6753;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.548;QD=23.88;ReadPosRankSum=1.712;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4059,447,0 chrXII 242983 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.1290;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.17;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3604,381,0 chrXII 243426 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1034,117,0 chrXII 243642 . C A 87.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.50;SB=-5.655e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:120,12,0 chrXII 243663 . A G 169.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=16.91;SB=-1.179e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:202,21,0 chrXII 243690 . C G 105.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=9.57;SB=-1.111e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:138,15,0 chrXII 243694 . A G 77.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=8.61;SB=-8.126e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:110,12,0 chrXII 243704 . A T 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.75;SB=-1.105e+02 GT:AD:DP:GQ:PL 1/1:0,8:8:9:86,9,0 chrXII 243705 . T C 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.25;SB=-1.065e+02 GT:AD:DP:GQ:PL 1/1:0,8:8:9:82,9,0 chrXII 243711 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=3.22;SB=-8.380e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:57,6,0 chrXII 243795 . T C 636 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.50;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:72:669,72,0 chrXII 243937 . A G 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=61;Dels=0.00;FS=6.495;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.493;QD=23.10;ReadPosRankSum=1.673;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,57:61:99:1442,162,0 chrXII 244131 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.78;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3321,351,0 chrXII 244156 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.212;QD=22.56;ReadPosRankSum=1.674;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2763,300,0 chrXII 244378 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.44;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4204,433,0 chrXII 244405 . C A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.90;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3848,411,0 chrXII 244615 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.06;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2129,228,0 chrXII 244672 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.84;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3188,333,0 chrXII 244708 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.2328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.20;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3130,339,0 chrXII 244993 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.19;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4040,438,0 chrXII 245489 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.967;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.656;QD=23.72;ReadPosRankSum=1.693;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4223,453,0 chrXII 245635 . C T 5117.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5117,538,0 chrXII 245789 . G T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.71;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4884,511,0 chrXII 245823 . T C 5684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.8471;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.670;QD=23.68;ReadPosRankSum=1.718;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5684,610,0 chrXII 246098 . G C 2804 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2837,300,0 chrXII 246274 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.40;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2009,216,0 chrXII 246315 . T A 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=23.51;ReadPosRankSum=1.696;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2266,249,0 chrXII 246480 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3625,379,0 chrXII 246534 . A G 4472.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.6503;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.91;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4472,483,0 chrXII 246582 . T A 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=3.025;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.460;QD=22.69;ReadPosRankSum=2.412;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4470,486,0 chrXII 246698 . T A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3882,420,0 chrXII 246798 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.07;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3612,379,0 chrXII 246804 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=2.997;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.412;QD=20.91;ReadPosRankSum=2.377;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3555,375,0 chrXII 246852 . A G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.762;DP=170;Dels=0.00;FS=15.984;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.849;QD=21.06;ReadPosRankSum=3.660;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:5,164:170:99:3580,405,0 chrXII 246916 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.168;QD=24.79;ReadPosRankSum=1.684;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3595,393,0 chrXII 247009 . A C 3099 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.82;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3132,336,0 chrXII 247140 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.83;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3456,372,0 chrXII 247320 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.07;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4309,465,0 chrXII 247374 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3924;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.577;QD=19.81;ReadPosRankSum=1.714;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3863,423,0 chrXII 247377 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.38;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3975,412,0 chrXII 247393 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=204;Dels=0.00;FS=5.933;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.867;QD=18.98;ReadPosRankSum=2.907;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:3871,409,0 chrXII 247449 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.76;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3774,408,0 chrXII 247740 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=184;Dels=0.00;FS=9.041;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.063;QD=23.33;ReadPosRankSum=3.411;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:4,177:184:99:4293,477,0 chrXII 247888 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=20.50;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2452,252,0 chrXII 247896 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=119;Dels=0.00;FS=9.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-0.796;QD=19.21;ReadPosRankSum=2.408;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2319,252,0 chrXII 247920 . T C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.702;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.112;QD=19.02;ReadPosRankSum=1.704;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2391,261,0 chrXII 247930 . G C 2383 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=18.62;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2416,270,0 chrXII 247958 . A T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0242;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.19;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3254,339,0 chrXII 248269 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.91;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3070,318,0 chrXII 248314 . C G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=26.12;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3813,408,0 chrXII 248559 . G T 3112 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2245;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.12;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3145,324,0 chrXII 248615 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.996;DP=141;Dels=0.00;FS=2.853;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.148;QD=23.77;ReadPosRankSum=2.206;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3352,354,0 chrXII 248656 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.91;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3079,324,0 chrXII 248752 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=5.270;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.376;QD=22.17;ReadPosRankSum=1.712;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3924,429,0 chrXII 249052 . A C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.887;QD=22.75;ReadPosRankSum=1.711;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3753,411,0 chrXII 249293 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.60;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3542,372,0 chrXII 249616 . T G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0934;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.495;QD=22.34;ReadPosRankSum=-0.485;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3910,432,0 chrXII 249640 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.79;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4057,424,0 chrXII 249742 . T G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.68;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3989,444,0 chrXII 249788 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.36;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3087,324,0 chrXII 250232 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2853,297,0 chrXII 250412 . A G 6019.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.7156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6019,634,0 chrXII 250711 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3314,345,0 chrXII 251213 . T A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;DP=105;Dels=0.00;FS=49.345;HaplotypeScore=14.9165;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-0.554;QD=0.15;ReadPosRankSum=-4.808;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,24:105:46:46,0,458 chrXII 251842 . C T 6260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=264;Dels=0.00;FS=3.501;HaplotypeScore=14.2575;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.661;QD=23.71;ReadPosRankSum=-1.441;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6260,661,0 chrXII 252615 . T G 9037.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=19.5291;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.29;SB=-4.715e+03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:9037,991,0 chrXII 253266 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.861;QD=21.02;ReadPosRankSum=1.712;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3678,405,0 chrXII 253274 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.737;QD=19.66;ReadPosRankSum=1.712;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3420,375,0 chrXII 253806 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=151;Dels=0.00;FS=6.407;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.811;QD=22.25;ReadPosRankSum=2.417;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3359,357,0 chrXII 254321 . T C 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=275;Dels=0.00;FS=6.043;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.707;QD=23.84;ReadPosRankSum=2.865;SB=-3.647e+03 GT:AD:DP:GQ:PL 1/1:3,271:275:99:6556,700,0 chrXII 254442 . C T 6986.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.43;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6986,727,0 chrXII 254773 . C T 5558.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.9020;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.97;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5558,580,0 chrXII 255122 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=3.330;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.241;QD=21.87;ReadPosRankSum=1.705;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2832,303,0 chrXII 255134 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.252;QD=20.62;ReadPosRankSum=1.673;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2445,264,0 chrXII 255227 . G C 2522 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2555,273,0 chrXII 255299 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.29;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3299,354,0 chrXII 256011 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2393;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2568,279,0 chrXII 256221 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.806;QD=24.45;ReadPosRankSum=1.692;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4205,447,0 chrXII 257091 . G C 4399.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.79;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,187:193:99:4399,483,0 chrXII 257316 . G T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1351;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.93;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4427,460,0 chrXII 257334 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=191;Dels=0.00;FS=13.735;HaplotypeScore=10.7215;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.648;QD=21.59;ReadPosRankSum=3.377;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4123,438,0 chrXII 257504 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=2.835;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.180;QD=21.74;ReadPosRankSum=2.421;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3740,411,0 chrXII 257654 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=6.903;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.282;QD=24.37;ReadPosRankSum=2.327;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3923,426,0 chrXII 258928 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.62;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4185,436,0 chrXII 259051 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4898,511,0 chrXII 259210 . G A 6000.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.49;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6000,631,0 chrXII 259471 . G T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.75;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3344,366,0 chrXII 259762 . C G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=15.1985;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=24.19;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3435,372,0 chrXII 260002 . G C 6987.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.09;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,286:290:99:6987,760,0 chrXII 260116 . G T 8428.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.15;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,361:364:99:8428,895,0 chrXII 260197 . A G 7669.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.764;DP=377;Dels=0.00;FS=17.537;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.578;QD=20.34;ReadPosRankSum=3.785;SB=-4.265e+03 GT:AD:DP:GQ:PL 1/1:5,367:377:99:7669,849,0 chrXII 260220 . T C 7459.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=373;Dels=0.00;FS=3.014;HaplotypeScore=8.2577;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.632;QD=20.00;ReadPosRankSum=2.410;SB=-4.784e+03 GT:AD:DP:GQ:PL 1/1:2,370:373:99:7459,808,0 chrXII 260496 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.6726;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.23;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4868,505,0 chrXII 260593 . C T 142.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.02;FS=0.000;HaplotypeScore=115.1298;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=0.99;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:21:175,21,0 chrXII 261030 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.87;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3101,333,0 chrXII 261053 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=167;Dels=0.00;FS=3.024;HaplotypeScore=9.5572;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.699;QD=20.29;ReadPosRankSum=2.405;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3389,375,0 chrXII 261101 . G A 4332.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.34;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4332,454,0 chrXII 262255 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4089,424,0 chrXII 262367 . G A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.3419;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.56;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4371,468,0 chrXII 262607 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.73;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2479,258,0 chrXII 262933 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.02;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1294,141,0 chrXII 262942 . T A 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.072;QD=19.25;ReadPosRankSum=1.567;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1265,132,0 chrXII 262959 . A T 1287 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.21;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1320,141,0 chrXII 263076 . T C 2614 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.34;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2647,294,0 chrXII 263142 . G C 2397 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.83;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2430,258,0 chrXII 263151 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.27;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2662,276,0 chrXII 263230 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.74;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2858,297,0 chrXII 263279 . A G 2043 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.21;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2076,228,0 chrXII 263319 . A T 269.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;DP=96;Dels=0.00;FS=12.460;HaplotypeScore=78.1358;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=0.162;QD=2.80;ReadPosRankSum=-3.124;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:63,33:96:99:299,0,268 chrXII 264082 . T A 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.493;DP=14;Dels=0.00;FS=2.522;HaplotypeScore=5.8923;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=1;MQRankSum=0.377;QD=4.39;ReadPosRankSum=0.811;SB=-6.351e+01 GT:AD:DP:GQ:PL 1/1:7,7:14:12:94,12,0 chrXII 264597 . C A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3721,399,0 chrXII 264739 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.90;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3656,387,0 chrXII 264903 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.64;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3810,388,0 chrXII 264939 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=148;Dels=0.00;FS=8.974;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.307;QD=24.52;ReadPosRankSum=3.376;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3629,387,0 chrXII 265134 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.17;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2574,282,0 chrXII 265165 . A G 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.648;QD=21.06;ReadPosRankSum=-0.803;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2623,285,0 chrXII 265286 . C G 2652 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.33;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2685,288,0 chrXII 265971 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.96;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3583,373,0 chrXII 266094 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3395,357,0 chrXII 266148 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2807,291,0 chrXII 266577 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=4.826;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.603;QD=24.69;ReadPosRankSum=1.711;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3999,423,0 chrXII 266628 . T G 3129 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.19;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3162,339,0 chrXII 266631 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.12;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3219,354,0 chrXII 266739 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=4.506;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.683;QD=24.49;ReadPosRankSum=1.712;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4285,450,0 chrXII 266889 . A G 3325.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=2.843;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.141;QD=20.15;ReadPosRankSum=2.405;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3325,360,0 chrXII 266895 . T C 3178 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.662;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.430;QD=19.26;ReadPosRankSum=1.711;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3211,345,0 chrXII 266899 . C T 3168 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.97;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3201,339,0 chrXII 266966 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.59;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2184,237,0 chrXII 266973 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.61;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2010,219,0 chrXII 267357 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.735;QD=23.63;ReadPosRankSum=1.707;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3284,360,0 chrXII 267477 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=174;Dels=0.00;FS=2.818;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.328;QD=25.42;ReadPosRankSum=2.421;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4423,474,0 chrXII 268559 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=7.406;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.142;QD=24.32;ReadPosRankSum=2.411;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3097,330,0 chrXII 268599 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.66;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1914,207,0 chrXII 268605 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.27;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1926,201,0 chrXII 268836 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=26.60;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2267,237,0 chrXII 269037 . T A 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.712;QD=21.54;ReadPosRankSum=1.637;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3178,342,0 chrXII 269053 . G T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.80;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3292,340,0 chrXII 269058 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.03;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3118,336,0 chrXII 269215 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.445;QD=24.26;ReadPosRankSum=1.709;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3614,387,0 chrXII 269349 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.96;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4179,436,0 chrXII 269358 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.93;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4035,415,0 chrXII 269565 . A G 5396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.262;HaplotypeScore=15.8702;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.397;QD=23.36;ReadPosRankSum=1.657;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5396,600,0 chrXII 270420 . G T 2831 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2864,303,0 chrXII 270839 . A G 2431 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2464,270,0 chrXII 270995 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3128,342,0 chrXII 271689 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.62;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3674,379,0 chrXII 272263 . G T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3289,357,0 chrXII 272455 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.38;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4315,457,0 chrXII 272497 . C G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.35;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4249,453,0 chrXII 272572 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.5309;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.86;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4115,438,0 chrXII 272710 . T C 5289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=245;Dels=0.00;FS=2.990;HaplotypeScore=14.3883;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.247;QD=21.59;ReadPosRankSum=2.409;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:5289,573,0 chrXII 272974 . A G 5613.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.7390;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5613,607,0 chrXII 273019 . T C 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=209;Dels=0.00;FS=12.232;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.173;QD=22.22;ReadPosRankSum=2.926;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:3,200:209:99:4643,504,0 chrXII 273481 . G A 5279.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.66;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5279,553,0 chrXII 273722 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.87;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3891,403,0 chrXII 273894 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.979;QD=22.13;ReadPosRankSum=1.682;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1560,168,0 chrXII 274027 . T C 647 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.03;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:680,72,0 chrXII 274041 . A G 454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.250;QD=16.81;ReadPosRankSum=2.268;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:2,25:27:54:487,54,0 chrXII 274160 . A G 2530 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.62;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2563,267,0 chrXII 274162 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4807;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.72;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2400,258,0 chrXII 274243 . G C 2989 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.50;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3022,324,0 chrXII 274580 . G C 5660.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5660,607,0 chrXII 275113 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3124,327,0 chrXII 275215 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2838,312,0 chrXII 275287 . C T 1250 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1283,138,0 chrXII 275969 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.86;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2616,276,0 chrXII 276049 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.93;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2833,294,0 chrXII 276224 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.990;QD=21.46;ReadPosRankSum=1.677;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2737,291,0 chrXII 276235 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.65;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2573,273,0 chrXII 276391 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.099;QD=24.92;ReadPosRankSum=1.695;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2351,252,0 chrXII 276631 . T G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=24.05;ReadPosRankSum=1.646;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2919,318,0 chrXII 276713 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2406,258,0 chrXII 276795 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.74;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3959,415,0 chrXII 276838 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.3444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.55;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3337,354,0 chrXII 276974 . T C 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.034;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.888;QD=23.66;ReadPosRankSum=1.703;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2848,300,0 chrXII 277307 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.425;QD=24.45;ReadPosRankSum=1.667;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2625,282,0 chrXII 277526 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.71;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2498,273,0 chrXII 277541 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.44;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2477,276,0 chrXII 277574 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.71;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2964,321,0 chrXII 277604 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.555;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.139;QD=23.41;ReadPosRankSum=1.682;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3264,351,0 chrXII 277652 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.69;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3365,351,0 chrXII 278461 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.3099;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.70;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4976,511,0 chrXII 278475 . T A 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=220;Dels=0.00;FS=6.614;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.084;QD=21.85;ReadPosRankSum=2.416;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4807,496,0 chrXII 278491 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.7618;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.69;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4365,471,0 chrXII 278546 . C G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.1354;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.61;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4059,427,0 chrXII 278861 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=183;Dels=0.00;FS=3.546;HaplotypeScore=12.3197;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.565;QD=23.17;ReadPosRankSum=1.656;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4241,450,0 chrXII 278916 . G T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5346;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.49;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4322,445,0 chrXII 279188 . G C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.85;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3539,387,0 chrXII 279218 . T C 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.567;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.544;QD=19.22;ReadPosRankSum=1.690;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3224,348,0 chrXII 279224 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=19.79;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3404,349,0 chrXII 279239 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=1.576;QD=18.26;ReadPosRankSum=1.713;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3287,360,0 chrXII 279272 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.20;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4134,424,0 chrXII 279352 . A T 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=140;Dels=0.00;FS=3.437;HaplotypeScore=10.9987;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.162;QD=21.36;ReadPosRankSum=1.483;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3024,321,0 chrXII 279488 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.01;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3650,381,0 chrXII 279746 . C T 5933.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5933,631,0 chrXII 279975 . G A 6046.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=17.7972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.21;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6046,631,0 chrXII 280198 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.91;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3922,438,0 chrXII 280340 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3328,348,0 chrXII 280412 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.46;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4816,499,0 chrXII 280717 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.8083;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.53;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,200:213:99:4585,498,0 chrXII 281178 . A C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.617;DP=151;Dels=0.00;FS=3.768;HaplotypeScore=14.2759;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.316;QD=22.40;ReadPosRankSum=1.501;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3383,355,0 chrXII 281289 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.227;HaplotypeScore=14.0412;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.317;QD=22.22;ReadPosRankSum=1.711;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3667,390,0 chrXII 281400 . C T 5621.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5621,586,0 chrXII 281460 . T C 4786.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4786,511,0 chrXII 281816 . C T 242 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=20.8203;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=3.41;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:30:275,30,0 chrXII 281896 . A C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=12.701;HaplotypeScore=9.5514;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.345;QD=25.42;ReadPosRankSum=2.418;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,156:159:99:4042,441,0 chrXII 282094 . G A 5790.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.1215;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.89;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5790,610,0 chrXII 282215 . C T 6026.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.7637;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.82;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6026,631,0 chrXII 282385 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.420;QD=20.45;ReadPosRankSum=1.689;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3313,357,0 chrXII 282399 . G T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.15;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3411,357,0 chrXII 282495 . A T 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.055;QD=18.77;ReadPosRankSum=1.688;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2980,330,0 chrXII 282505 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=5.3198;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=17.82;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2653,288,0 chrXII 282557 . A T 1620 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=78.9773;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.41;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1653,174,0 chrXII 282741 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.63;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1704,180,0 chrXII 282769 . C G 1974 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2007,216,0 chrXII 283638 . A T 808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.481;QD=22.44;ReadPosRankSum=1.636;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:90:841,90,0 chrXII 283645 . T A 574 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.13;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:607,66,0 chrXII 283710 . T C 663 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=-0.101;QD=10.87;ReadPosRankSum=2.369;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,59:61:75:696,75,0 chrXII 283719 . G A 849 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=12.13;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:93:882,93,0 chrXII 283720 . C A 845 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=12.07;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:93:878,93,0 chrXII 283731 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=10.67;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1036,111,0 chrXII 283746 . G T 1388 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=11.57;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1421,156,0 chrXII 283794 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.26;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2479,264,0 chrXII 284108 . G A 5442.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5442,574,0 chrXII 284270 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=181;Dels=0.00;FS=2.938;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.160;QD=22.91;ReadPosRankSum=2.422;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4146,447,0 chrXII 284594 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8825;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.42;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3724,402,0 chrXII 284627 . A T 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=3.106;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.565;QD=24.32;ReadPosRankSum=1.657;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4475,489,0 chrXII 284763 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.01;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4302,451,0 chrXII 284777 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.136;QD=22.44;ReadPosRankSum=1.654;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3995,429,0 chrXII 284813 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.20;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3907,426,0 chrXII 284882 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=203;Dels=0.00;FS=3.030;HaplotypeScore=14.3752;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.869;QD=22.59;ReadPosRankSum=2.401;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4586,495,0 chrXII 284978 . C T 5384.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.25;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5384,562,0 chrXII 285138 . C T 5689.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.00;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5689,607,0 chrXII 286333 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.155;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.392;QD=25.01;ReadPosRankSum=1.709;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3902,414,0 chrXII 286348 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.46;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3355,366,0 chrXII 286350 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=23.81;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3428,363,0 chrXII 286729 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.40;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3636,399,0 chrXII 286816 . G T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.4233;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.98;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4621,492,0 chrXII 286864 . T A 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1252;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.234;QD=24.70;ReadPosRankSum=1.713;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4470,489,0 chrXII 287005 . T C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.48;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4714,507,0 chrXII 287010 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.02;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4380,466,0 chrXII 287397 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.1080;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.96;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3887,414,0 chrXII 287409 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.14;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3742,393,0 chrXII 287935 . C G 3159 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3192,330,0 chrXII 288047 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4227,459,0 chrXII 288347 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.10;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4368,463,0 chrXII 288473 . T C 5073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.032;QD=23.27;ReadPosRankSum=1.652;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:5073,543,0 chrXII 288491 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.6598;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.00;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4922,517,0 chrXII 288572 . C T 4933.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.0003;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.16;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4933,517,0 chrXII 288614 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=230;Dels=0.00;FS=8.811;HaplotypeScore=17.4277;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.065;QD=22.03;ReadPosRankSum=2.902;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:5067,567,0 chrXII 288740 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=188;Dels=0.00;FS=3.026;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.842;QD=23.69;ReadPosRankSum=2.357;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4453,483,0 chrXII 288935 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.99;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4498,480,0 chrXII 289373 . G A 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.847;DP=151;Dels=0.00;FS=10.118;HaplotypeScore=10.1298;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;MQRankSum=0.020;QD=11.64;ReadPosRankSum=2.074;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:1791,192,0 chrXII 289382 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=13.95;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2028,216,0 chrXII 289396 . A G 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.479;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.2111;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.228;QD=12.80;ReadPosRankSum=-0.615;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2004,210,0 chrXII 289433 . G T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=20.07;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3532,372,0 chrXII 289538 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=24.75;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3837,391,0 chrXII 289576 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=-0.507;QD=22.80;ReadPosRankSum=1.669;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3740,411,0 chrXII 289582 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=22.66;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3762,411,0 chrXII 289627 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=22.30;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4371,480,0 chrXII 289660 . C G 4100.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.20;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4100,444,0 chrXII 289669 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=21.18;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4003,424,0 chrXII 289671 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.19;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3856,423,0 chrXII 289996 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=24.33;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3430,357,0 chrXII 289997 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.162;QD=23.68;ReadPosRankSum=1.707;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3291,357,0 chrXII 290016 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.56;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2469,273,0 chrXII 290058 . A T 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.000;QD=22.19;ReadPosRankSum=1.634;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2385,261,0 chrXII 290159 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.408;QD=24.84;ReadPosRankSum=1.698;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2567,276,0 chrXII 290328 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4716;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.50;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3332,363,0 chrXII 290359 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.819;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.008;QD=24.64;ReadPosRankSum=2.417;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3696,390,0 chrXII 290595 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4143,450,0 chrXII 290718 . T C 5033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=214;Dels=0.00;FS=2.768;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.997;QD=23.52;ReadPosRankSum=2.415;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5033,546,0 chrXII 290736 . A G 4866.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.62;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4866,520,0 chrXII 291216 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.48;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4339,477,0 chrXII 291384 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=7.946;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.545;QD=20.10;ReadPosRankSum=2.319;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3437,357,0 chrXII 291386 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.27;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3314,366,0 chrXII 291459 . T C 4750.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.59;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4750,508,0 chrXII 291969 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=12.6557;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.70;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1812,192,0 chrXII 292312 . C A 2785 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.87;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2818,297,0 chrXII 292518 . C G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.78;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3394,360,0 chrXII 292529 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.70;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3265,366,0 chrXII 292618 . G C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3421,381,0 chrXII 292858 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.30;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3456,375,0 chrXII 292952 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.227;QD=20.99;ReadPosRankSum=1.704;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2615,285,0 chrXII 293009 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.330;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.323;QD=25.71;ReadPosRankSum=1.705;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3317,345,0 chrXII 293060 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3290,342,0 chrXII 293181 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2556,264,0 chrXII 293333 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.51;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2582,273,0 chrXII 293839 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2246,234,0 chrXII 293882 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=88;Dels=0.00;FS=2.650;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=0.322;QD=22.36;ReadPosRankSum=1.610;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:2001,219,0 chrXII 294090 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2560,264,0 chrXII 294289 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3603,378,0 chrXII 294637 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3553,370,0 chrXII 294718 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.95;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3543,372,0 chrXII 295045 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.51;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3534,369,0 chrXII 295063 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.57;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3373,375,0 chrXII 295292 . C T 5023.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.15;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5023,526,0 chrXII 295360 . C T 6094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.128;QD=24.87;ReadPosRankSum=0.057;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:6094,617,0 chrXII 295384 . A G 5219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=230;Dels=0.00;FS=7.817;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.350;QD=22.69;ReadPosRankSum=2.363;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:2,226:230:99:5219,570,0 chrXII 296196 . T A 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=5.528;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.524;QD=23.20;ReadPosRankSum=1.697;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2353,249,0 chrXII 296236 . C A 1742 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.99;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1775,186,0 chrXII 296473 . C T 757 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.03;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:87:790,87,0 chrXII 297011 . A T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3392,369,0 chrXII 297157 . G T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.48;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3378,354,0 chrXII 298644 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.86;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4152,453,0 chrXII 299124 . G A 5725.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.3073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5725,598,0 chrXII 299174 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.518;QD=23.74;ReadPosRankSum=1.652;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4155,441,0 chrXII 299209 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.3304;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.40;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3360,351,0 chrXII 299315 . G T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.59;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4043,424,0 chrXII 299526 . A C 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.7946;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.182;QD=20.72;ReadPosRankSum=1.675;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3791,417,0 chrXII 299532 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=2.787;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.164;QD=21.26;ReadPosRankSum=2.371;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3997,429,0 chrXII 299734 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.26;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3220,336,0 chrXII 300539 . T C 2385 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2418,261,0 chrXII 301123 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4373,457,0 chrXII 301172 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.419;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.819;QD=22.85;ReadPosRankSum=1.711;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3839,408,0 chrXII 301291 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4182,453,0 chrXII 301957 . G A 4379.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.29;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4379,454,0 chrXII 301966 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=3.222;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.127;QD=21.31;ReadPosRankSum=1.695;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4049,447,0 chrXII 302144 . T C 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.5647;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.769;QD=24.03;ReadPosRankSum=1.681;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4999,546,0 chrXII 302196 . C G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.04;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4567,504,0 chrXII 302282 . T G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4522,481,0 chrXII 302332 . T A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.1651;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.72;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4158,441,0 chrXII 302440 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=165;Dels=0.00;FS=9.093;HaplotypeScore=16.0073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.966;QD=22.64;ReadPosRankSum=3.286;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:4,158:165:99:3736,411,0 chrXII 302671 . G C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,141:147:99:3489,366,0 chrXII 302764 . A T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3943,406,0 chrXII 303516 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.641;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.421;QD=23.47;ReadPosRankSum=1.701;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2638,282,0 chrXII 303601 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.38;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2853,297,0 chrXII 303604 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.73;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2707,285,0 chrXII 303878 . A G 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=112;Dels=0.00;FS=6.140;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=2.139;QD=22.62;ReadPosRankSum=2.383;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2567,273,0 chrXII 304243 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=21.5375;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.60;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5530,580,0 chrXII 304352 . G A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.87;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4655,484,0 chrXII 304381 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=196;Dels=0.00;FS=5.747;HaplotypeScore=11.9490;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.133;QD=21.60;ReadPosRankSum=2.933;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4234,456,0 chrXII 305200 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.1943;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.78;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3496,369,0 chrXII 305324 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.67;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3775,402,0 chrXII 305397 . A C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=6.407;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.500;QD=24.27;ReadPosRankSum=2.417;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3641,393,0 chrXII 305614 . C T 5091.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.68;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5091,552,0 chrXII 305731 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=187;Dels=0.00;FS=3.378;HaplotypeScore=8.4683;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=1.489;QD=20.83;ReadPosRankSum=1.601;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3895,412,0 chrXII 305736 . C A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.1314;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.28;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4086,424,0 chrXII 305771 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.92;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4644,516,0 chrXII 306415 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.41;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3255,354,0 chrXII 306665 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.91;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1964,219,0 chrXII 307503 . G T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3906,412,0 chrXII 307601 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3241,348,0 chrXII 307980 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=2.761;HaplotypeScore=11.3562;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.147;QD=23.88;ReadPosRankSum=2.400;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4728,505,0 chrXII 308630 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.85;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4449,463,0 chrXII 308703 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=9.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.537;QD=23.38;ReadPosRankSum=2.397;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3297,360,0 chrXII 308802 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3153,327,0 chrXII 309238 . A C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.9200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.975;QD=22.10;ReadPosRankSum=1.571;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3337,369,0 chrXII 310006 . G T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.6903;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.72;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3749,396,0 chrXII 310404 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3057,333,0 chrXII 310613 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8041;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.59;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3170,330,0 chrXII 310770 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.83;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3297,357,0 chrXII 310983 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.04;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3389,366,0 chrXII 311265 . A C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=7.217;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.315;QD=22.94;ReadPosRankSum=2.368;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2832,312,0 chrXII 311784 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.90;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3585,387,0 chrXII 311889 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.99;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3182,336,0 chrXII 311937 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.82;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2652,294,0 chrXII 312135 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.72;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4424,463,0 chrXII 312163 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.302;QD=20.70;ReadPosRankSum=1.712;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3519,381,0 chrXII 312168 . G C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.98;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3609,381,0 chrXII 312399 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.83;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4023,421,0 chrXII 312573 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3506,381,0 chrXII 312732 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3161,330,0 chrXII 312984 . T A 2744 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.61;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2777,288,0 chrXII 313107 . T G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=191;Dels=0.00;FS=8.403;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=21.26;ReadPosRankSum=3.413;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:4,184:191:99:4060,450,0 chrXII 313320 . T C 4971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=3.507;HaplotypeScore=9.6752;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.317;QD=23.01;ReadPosRankSum=1.667;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4971,546,0 chrXII 313374 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.052;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.247;QD=22.80;ReadPosRankSum=1.709;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3420,381,0 chrXII 313809 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.97;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4065,435,0 chrXII 313812 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.30;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4025,432,0 chrXII 313848 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.30;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3877,406,0 chrXII 313878 . A G 3207 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.69;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3240,345,0 chrXII 315348 . G C 2525 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.82;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2558,282,0 chrXII 315383 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2383,261,0 chrXII 315459 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.526;QD=23.27;ReadPosRankSum=1.681;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3174,354,0 chrXII 315521 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.38;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3578,384,0 chrXII 315642 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.475;QD=23.64;ReadPosRankSum=1.704;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2964,333,0 chrXII 316223 . A C 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.015;QD=21.80;ReadPosRankSum=1.664;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4468,498,0 chrXII 316490 . G A 5360.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.40;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5360,559,0 chrXII 316628 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=260;Dels=0.00;FS=2.983;HaplotypeScore=22.3081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.043;QD=22.50;ReadPosRankSum=2.345;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:2,257:260:99:5851,645,0 chrXII 317117 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2939,303,0 chrXII 317498 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.84;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3623,390,0 chrXII 317534 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.46;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3488,366,0 chrXII 317605 . A G 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.902;QD=19.95;ReadPosRankSum=1.696;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1948,213,0 chrXII 317614 . A T 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.423;QD=21.37;ReadPosRankSum=1.629;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2191,225,0 chrXII 317989 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3249,339,0 chrXII 318033 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3175,336,0 chrXII 318348 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=25.86;ReadPosRankSum=1.703;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3059,324,0 chrXII 318570 . T C 6315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.703;QD=25.26;ReadPosRankSum=1.704;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:6315,673,0 chrXII 318879 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.74;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3323,360,0 chrXII 318969 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3237,336,0 chrXII 319560 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4564;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.22;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4365,477,0 chrXII 319635 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=198;Dels=0.00;FS=5.990;HaplotypeScore=12.1367;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.638;QD=22.73;ReadPosRankSum=2.934;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4501,492,0 chrXII 319746 . C G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.04;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4639,507,0 chrXII 319896 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.4611;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.55;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3412,363,0 chrXII 320465 . C T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.4005;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.94;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4389,463,0 chrXII 320775 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.8123;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.646;QD=23.05;ReadPosRankSum=1.698;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4680,510,0 chrXII 320814 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.4334;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.70;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3910,411,0 chrXII 320904 . G A 5290.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.95;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5290,559,0 chrXII 321077 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.20;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4732,496,0 chrXII 321084 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.298;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.640;QD=22.86;ReadPosRankSum=1.664;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4663,487,0 chrXII 321294 . C T 4962.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4296;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.32;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4962,517,0 chrXII 321345 . G A 4818.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.33;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4818,493,0 chrXII 321460 . A G 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=209;Dels=0.00;FS=2.953;HaplotypeScore=13.8672;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.301;QD=22.09;ReadPosRankSum=2.414;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4616,510,0 chrXII 321772 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.567;DP=174;Dels=0.00;FS=6.034;HaplotypeScore=11.5218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.561;QD=22.74;ReadPosRankSum=2.174;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3957,404,0 chrXII 321825 . A G 4469.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.77;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4469,477,0 chrXII 322042 . C T 2122 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=15.49;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2155,234,0 chrXII 322071 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=16.09;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2157,231,0 chrXII 322311 . T G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.008;DP=160;Dels=0.00;FS=2.796;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.344;QD=24.64;ReadPosRankSum=0.745;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3942,423,0 chrXII 322903 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.05;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3619,399,0 chrXII 323271 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.84;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3862,406,0 chrXII 323467 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.00;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3081,318,0 chrXII 323570 . T A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.67;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3337,360,0 chrXII 323599 . A G 3034 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.89;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3067,327,0 chrXII 323636 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.46;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3346,360,0 chrXII 323645 . T C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=149;Dels=0.00;FS=6.104;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.277;QD=20.82;ReadPosRankSum=2.953;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3135,351,0 chrXII 323709 . G A 4785.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.54;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4785,516,0 chrXII 324014 . A G 7652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=345;Dels=0.00;FS=3.419;HaplotypeScore=14.4446;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.005;QD=22.18;ReadPosRankSum=1.722;SB=-4.161e+03 GT:AD:DP:GQ:PL 1/1:1,344:345:99:7652,849,0 chrXII 324173 . A C 6318.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=14.3093;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.27;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6318,685,0 chrXII 324449 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.59;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3015,324,0 chrXII 324470 . G A 2828 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.37;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2861,294,0 chrXII 324662 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=9.189;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.560;QD=24.11;ReadPosRankSum=2.362;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4098,433,0 chrXII 325271 . G T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1466;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.48;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4554,475,0 chrXII 325334 . C A 4829.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4829,505,0 chrXII 325403 . C A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4426,466,0 chrXII 325968 . G T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4151,436,0 chrXII 326213 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.623;QD=22.94;ReadPosRankSum=1.705;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2947,318,0 chrXII 326408 . T C 1678 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.32;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1711,183,0 chrXII 326975 . C T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.21;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4711,507,0 chrXII 326981 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.52;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4662,504,0 chrXII 327112 . A G 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=244;Dels=0.00;FS=5.821;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.336;QD=23.23;ReadPosRankSum=2.946;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:5669,607,0 chrXII 327373 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=112;Dels=0.00;FS=4.503;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.409;QD=22.99;ReadPosRankSum=1.701;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2608,285,0 chrXII 327506 . C A 784 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.63;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:87:817,87,0 chrXII 327514 . A T 888 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.20;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:921,96,0 chrXII 328168 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.04;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4148,439,0 chrXII 328409 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2676;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.24;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4695,484,0 chrXII 328471 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.61;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5455,577,0 chrXII 328528 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=228;Dels=0.00;FS=5.362;HaplotypeScore=18.2840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.111;QD=19.98;ReadPosRankSum=2.907;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:4556,484,0 chrXII 328635 . C T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.92;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5249,570,0 chrXII 328989 . T C 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.086;DP=254;Dels=0.00;FS=14.649;HaplotypeScore=8.1053;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.375;QD=20.37;ReadPosRankSum=4.024;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:6,248:254:99:5175,579,0 chrXII 328990 . A G 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=256;Dels=0.00;FS=3.349;HaplotypeScore=9.6827;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.979;QD=19.90;ReadPosRankSum=1.677;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:1,252:256:99:5095,567,0 chrXII 330265 . C G 5592.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5592,592,0 chrXII 330526 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3762,423,0 chrXII 330832 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=19.5761;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.96;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3268,357,0 chrXII 331041 . T G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-1.106;QD=20.55;ReadPosRankSum=1.710;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3219,345,0 chrXII 331044 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=21.47;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3370,343,0 chrXII 331075 . G C 2726 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=17.47;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2759,306,0 chrXII 331078 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=17.43;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2769,303,0 chrXII 331090 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.419;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=-1.577;QD=16.14;ReadPosRankSum=1.688;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2551,279,0 chrXII 331145 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.83;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3770,399,0 chrXII 331273 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6280;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.56;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3474,378,0 chrXII 331395 . C A 2863 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.54;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2896,300,0 chrXII 331937 . T G 5431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=228;Dels=0.00;FS=3.413;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.107;QD=23.82;ReadPosRankSum=1.671;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:5431,577,0 chrXII 331984 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4643,490,0 chrXII 332094 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.2994;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.83;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5046,523,0 chrXII 332157 . A T 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.096;QD=23.63;ReadPosRankSum=1.697;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4702,493,0 chrXII 332457 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.30;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2994,330,0 chrXII 332566 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.4202;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.96;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4501,475,0 chrXII 334170 . A G 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.412;QD=24.99;ReadPosRankSum=1.679;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4874,523,0 chrXII 335529 . G T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3444,366,0 chrXII 335835 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2416,258,0 chrXII 336921 . A T 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=118;Dels=0.00;FS=5.240;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.735;QD=19.58;ReadPosRankSum=2.872;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2343,261,0 chrXII 336975 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.70;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3120,324,0 chrXII 337003 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=129;Dels=0.00;FS=3.844;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.512;QD=23.78;ReadPosRankSum=1.705;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:3100,330,0 chrXII 337500 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3269,360,0 chrXII 338262 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3483,363,0 chrXII 338295 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.99;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3523,372,0 chrXII 338892 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.8633;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.26;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3493,372,0 chrXII 339111 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.96;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4697,510,0 chrXII 339377 . T C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.068;QD=21.25;ReadPosRankSum=1.672;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:4888,531,0 chrXII 339393 . T C 5282.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.83;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5282,582,0 chrXII 339496 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5424;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.61;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3253,342,0 chrXII 339567 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.57;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4007,418,0 chrXII 339777 . A G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9722;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.45;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3494,387,0 chrXII 339830 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.60;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2959,312,0 chrXII 340365 . A G 5906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=252;Dels=0.00;FS=3.000;HaplotypeScore=16.7066;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.463;QD=23.44;ReadPosRankSum=2.381;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5906,634,0 chrXII 340551 . A C 5750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=249;Dels=0.00;FS=3.460;HaplotypeScore=20.6921;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.689;QD=23.09;ReadPosRankSum=1.661;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,243:249:99:5750,627,0 chrXII 340584 . T C 5977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.5336;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.291;QD=22.81;ReadPosRankSum=1.719;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:5977,651,0 chrXII 340616 . A G 5852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=266;Dels=0.00;FS=3.298;HaplotypeScore=15.9976;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.386;QD=22.00;ReadPosRankSum=1.693;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:5852,628,0 chrXII 340695 . T C 6773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=291;Dels=0.00;FS=6.066;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.847;QD=23.27;ReadPosRankSum=2.382;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:6773,724,0 chrXII 340821 . T C 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=232;Dels=0.00;FS=3.724;HaplotypeScore=17.3168;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.052;QD=21.11;ReadPosRankSum=1.702;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4897,531,0 chrXII 341688 . T A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.6320;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.83;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4932,537,0 chrXII 342533 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3697,388,0 chrXII 342885 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3708,402,0 chrXII 345014 . C G 4685.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0783;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.19;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4685,499,0 chrXII 348674 . G C 1706 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.16;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1739,186,0 chrXII 351844 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3932,423,0 chrXII 357438 . G T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3739,394,0 chrXII 357723 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.29;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2819,309,0 chrXII 358336 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.1704;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.57;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4572,484,0 chrXII 361284 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=7.035;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.990;QD=23.28;ReadPosRankSum=2.310;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2897,303,0 chrXII 361865 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.8309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3022,336,0 chrXII 364406 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=139;Dels=0.00;FS=6.117;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.234;QD=22.15;ReadPosRankSum=2.905;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3112,339,0 chrXII 364453 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.302;HaplotypeScore=14.2100;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.665;QD=22.77;ReadPosRankSum=0.607;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3529,378,0 chrXII 365170 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.37;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2443,255,0 chrXII 367056 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3136,330,0 chrXII 369482 . A G 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.718;QD=19.93;ReadPosRankSum=2.338;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:2,42:44:99:910,99,0 chrXII 369485 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.71;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:945,102,0 chrXII 369632 . A G 78.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.70;SB=-5.355e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:111,12,0 chrXII 369646 . C T 137.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:170,18,0 chrXII 369873 . T C 6525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.715;DP=266;Dels=0.00;FS=6.892;HaplotypeScore=13.5349;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.978;QD=24.53;ReadPosRankSum=4.776;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:8,258:266:99:6525,703,0 chrXII 370090 . A G 5368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=241;Dels=0.00;FS=2.335;HaplotypeScore=20.3584;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.901;QD=22.27;ReadPosRankSum=3.424;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:4,235:241:99:5368,577,0 chrXII 370156 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.61;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4387,466,0 chrXII 370176 . A T 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=6.140;HaplotypeScore=7.9563;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.542;QD=23.78;ReadPosRankSum=2.383;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4375,471,0 chrXII 370434 . A T 2923 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.31;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2956,306,0 chrXII 370501 . G C 275.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=123;Dels=0.00;FS=2.942;HaplotypeScore=9.5112;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.670;QD=2.24;ReadPosRankSum=-0.930;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:17:308,17,0 chrXII 370558 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.94;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3349,351,0 chrXII 370785 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=245;Dels=0.00;FS=5.927;HaplotypeScore=16.7034;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.716;QD=22.82;ReadPosRankSum=2.930;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5592,609,0 chrXII 371097 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=3.091;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.35;ReadPosRankSum=1.716;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5285,562,0 chrXII 374238 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=16.39;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:787,84,0 chrXII 375317 . C T 892.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.184;DP=260;Dels=0.00;FS=3.827;HaplotypeScore=23.0713;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=0.308;QD=3.43;ReadPosRankSum=-8.471;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:198,61:260:99:922,0,2965 chrXII 375321 . T C 331.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.747;DP=259;Dels=0.00;FS=14.410;HaplotypeScore=13.4463;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-1.032;QD=1.28;ReadPosRankSum=-7.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,39:259:99:361,0,3616 chrXII 375322 . T G 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.468;DP=259;Dels=0.00;FS=12.753;HaplotypeScore=12.7124;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-0.722;QD=1.03;ReadPosRankSum=-7.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,37:259:99:297,0,3733 chrXII 378260 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.0260;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.236;QD=22.17;ReadPosRankSum=1.685;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,219:223:99:4945,543,0 chrXII 381157 . G C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.7659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3498,378,0 chrXII 381256 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3951,432,0 chrXII 381370 . G C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5337;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.30;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4446,477,0 chrXII 382560 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.92;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3014,333,0 chrXII 382590 . T C 2732 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.18;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2765,297,0 chrXII 382777 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.87;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,288,0 chrXII 386390 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.14;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1005,105,0 chrXII 386841 . G A 5801.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.44;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5801,613,0 chrXII 387257 . A G 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=209;Dels=0.00;FS=5.881;HaplotypeScore=14.4486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.493;QD=22.96;ReadPosRankSum=2.860;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4798,511,0 chrXII 387618 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=2.980;HaplotypeScore=9.8768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.141;QD=23.62;ReadPosRankSum=2.295;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4512,481,0 chrXII 388450 . A T 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=5.587;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.120;QD=22.65;ReadPosRankSum=1.541;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4100,426,0 chrXII 388456 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.04;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4102,441,0 chrXII 388762 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5272;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.67;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4048,441,0 chrXII 388801 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=4.032;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.322;QD=24.45;ReadPosRankSum=1.711;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4157,462,0 chrXII 388886 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=199;Dels=0.00;FS=2.905;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;MQRankSum=0.143;QD=17.89;ReadPosRankSum=2.425;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3561,381,0 chrXII 388891 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=17.40;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3584,378,0 chrXII 388903 . G A 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;MQRankSum=-1.597;QD=14.84;ReadPosRankSum=1.293;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:3090,336,0 chrXII 388904 . G C 3066 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=14.88;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:3099,333,0 chrXII 388930 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=13.43;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:3095,330,0 chrXII 388945 . G T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=16.04;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3545,367,0 chrXII 389118 . C G 7605.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.77;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:0,315:320:99:7605,826,0 chrXII 389245 . G A 8656.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=19.4830;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.18;SB=-4.515e+03 GT:AD:DP:GQ:PL 1/1:0,357:358:99:8656,916,0 chrXII 397180 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4346,483,0 chrXII 400451 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.62;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2935,306,0 chrXII 404239 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8518;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.32;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4734,490,0 chrXII 405362 . T C 6014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=259;Dels=0.00;FS=8.329;HaplotypeScore=14.8454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.434;QD=23.22;ReadPosRankSum=3.326;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:4,255:259:99:6014,660,0 chrXII 407639 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.20;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3642,384,0 chrXII 407663 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=7.399;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.379;QD=23.08;ReadPosRankSum=2.349;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3393,366,0 chrXII 407835 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2499,261,0 chrXII 407941 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.92;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4066,429,0 chrXII 408015 . T G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=2.581;HaplotypeScore=13.4353;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.643;QD=25.17;ReadPosRankSum=2.955;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3927,414,0 chrXII 408068 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4097,447,0 chrXII 408160 . C A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.76;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4984,517,0 chrXII 408368 . G C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.60;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3563,393,0 chrXII 408429 . A T 5697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=243;Dels=0.00;FS=15.209;HaplotypeScore=29.2689;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.290;QD=23.44;ReadPosRankSum=2.954;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5697,618,0 chrXII 408647 . G A 7435.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.3893;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.30;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:7435,778,0 chrXII 409269 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3392,357,0 chrXII 409417 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=157;Dels=0.00;FS=12.450;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.622;QD=23.73;ReadPosRankSum=2.917;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3726,405,0 chrXII 410525 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=144;Dels=0.00;FS=2.883;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.968;QD=24.76;ReadPosRankSum=2.415;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,139:144:99:3566,381,0 chrXII 410667 . A C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.7972;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.204;QD=22.78;ReadPosRankSum=1.711;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3758,405,0 chrXII 410950 . T C 7275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=315;Dels=0.00;FS=5.833;HaplotypeScore=16.0341;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.335;QD=23.10;ReadPosRankSum=2.952;SB=-3.557e+03 GT:AD:DP:GQ:PL 1/1:3,311:315:99:7275,810,0 chrXII 411601 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=233;Dels=0.00;FS=19.664;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;MQRankSum=-1.442;QD=15.26;ReadPosRankSum=3.813;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:5,228:233:99:3556,405,0 chrXII 411634 . A G 3270.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=244;Dels=0.00;FS=3.026;HaplotypeScore=2.7604;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;MQRankSum=-1.146;QD=13.40;ReadPosRankSum=2.379;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:3270,350,0 chrXII 411637 . T C 3146 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=246;Dels=0.00;FS=3.028;HaplotypeScore=4.2830;MLEAC=2;MLEAF=1.00;MQ=37.33;MQ0=0;MQRankSum=-1.841;QD=12.79;ReadPosRankSum=2.419;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:3179,357,0 chrXII 411640 . C T 2923 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=12.55;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:2956,321,0 chrXII 411643 . T C 2788 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=0;MQRankSum=-1.456;QD=12.34;ReadPosRankSum=1.701;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:2821,321,0 chrXII 411760 . T A 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=25.3872;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.516;QD=24.16;ReadPosRankSum=1.699;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5025,532,0 chrXII 411841 . T A 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=218;Dels=0.00;FS=3.653;HaplotypeScore=13.0025;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.159;QD=21.38;ReadPosRankSum=1.716;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4660,501,0 chrXII 411982 . C T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.98;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4701,487,0 chrXII 412228 . T C 4259.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4259,465,0 chrXII 412550 . A T 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.559;QD=22.55;ReadPosRankSum=1.676;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1431,150,0 chrXII 412752 . C A 1265 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1298,141,0 chrXII 412858 . C G 1917 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.96;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1950,210,0 chrXII 413032 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.378;QD=27.01;ReadPosRankSum=1.693;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2410,258,0 chrXII 413139 . C G 2637 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.76;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2670,288,0 chrXII 413397 . G A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.16;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4680,507,0 chrXII 413585 . G A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.38;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4848,502,0 chrXII 413957 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.17;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2975,315,0 chrXII 414057 . G T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.65;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3761,388,0 chrXII 414087 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.73;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3502,364,0 chrXII 414193 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.63;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3281,339,0 chrXII 414591 . G A 5407.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.92;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5407,565,0 chrXII 414696 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.29;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4347,462,0 chrXII 414729 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.53;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3966,420,0 chrXII 414769 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.02;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4035,421,0 chrXII 414993 . G C 3195 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3228,351,0 chrXII 415537 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=23.22;ReadPosRankSum=2.373;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2262,240,0 chrXII 416026 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.8865;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.53;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4618,481,0 chrXII 416231 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=3.301;HaplotypeScore=15.7239;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.611;QD=23.88;ReadPosRankSum=1.707;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3367,357,0 chrXII 416380 . G T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.82;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:3446,375,0 chrXII 416401 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=147;Dels=0.00;FS=9.034;HaplotypeScore=7.1024;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.905;QD=22.90;ReadPosRankSum=3.399;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:4,142:147:99:3366,363,0 chrXII 416608 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=3.003;HaplotypeScore=12.6608;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.119;QD=21.50;ReadPosRankSum=2.393;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3763,411,0 chrXII 416803 . C T 6619.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6619,694,0 chrXII 416876 . C G 6745.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.0734;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.10;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,284:292:99:6745,762,0 chrXII 416918 . G A 7415.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.47;SB=-3.734e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:7415,769,0 chrXII 417248 . T C 7099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.047;DP=304;Dels=0.00;FS=10.724;HaplotypeScore=26.6518;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.961;QD=23.35;ReadPosRankSum=4.152;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:6,293:304:99:7099,778,0 chrXII 417289 . G A 8130.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=17.1139;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.97;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:8130,847,0 chrXII 417465 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.14;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4591,481,0 chrXII 417956 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4059,432,0 chrXII 418313 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.89;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3560,387,0 chrXII 418391 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.6600;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.85;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3845,411,0 chrXII 418481 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.4323;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.67;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4474,478,0 chrXII 418640 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.47;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4283,468,0 chrXII 420086 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.67;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4485,489,0 chrXII 420104 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.10;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4320,474,0 chrXII 420323 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.88;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4060,421,0 chrXII 420674 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7641;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.93;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3286,363,0 chrXII 421083 . G A 6376.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.02;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6376,670,0 chrXII 421364 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.49;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2203,231,0 chrXII 421470 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.53;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1545,165,0 chrXII 421680 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5906;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.13;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2556,285,0 chrXII 421733 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.30;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2531,273,0 chrXII 422064 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.5312;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.03;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4181,439,0 chrXII 422168 . C A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3932,420,0 chrXII 422366 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4965;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.88;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3582,375,0 chrXII 422466 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.37;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3211,342,0 chrXII 422565 . A C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.36;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3877,429,0 chrXII 423150 . C G 3156 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.32;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3189,357,0 chrXII 423180 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.26;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3381,360,0 chrXII 423416 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.17;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2700,282,0 chrXII 423710 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.66;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3824,397,0 chrXII 423821 . G A 6893.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.44;SB=-3.749e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6893,715,0 chrXII 423854 . G C 7506.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=18.1735;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.19;SB=-3.899e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:7506,796,0 chrXII 424103 . A G 8257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=336;Dels=0.00;FS=2.906;HaplotypeScore=19.8010;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.256;QD=24.57;ReadPosRankSum=2.420;SB=-3.865e+03 GT:AD:DP:GQ:PL 1/1:2,333:336:99:8257,862,0 chrXII 424138 . T C 7714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=347;Dels=0.00;FS=8.195;HaplotypeScore=21.3362;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.783;QD=22.23;ReadPosRankSum=2.414;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:2,344:347:99:7714,885,0 chrXII 424315 . T C 9130.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=409;Dels=0.00;FS=2.566;HaplotypeScore=38.2076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.135;QD=22.32;ReadPosRankSum=2.953;SB=-3.581e+03 GT:AD:DP:GQ:PL 1/1:3,404:409:99:9130,982,0 chrXII 424491 . T C 10334.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.902;DP=443;Dels=0.00;FS=4.085;HaplotypeScore=23.1663;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.384;QD=23.33;ReadPosRankSum=1.693;SB=-4.533e+03 GT:AD:DP:GQ:PL 1/1:1,437:443:99:10334,1082,0 chrXII 424702 . T C 5667.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.14;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5667,633,0 chrXII 424898 . C G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6303;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.58;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4695,499,0 chrXII 425404 . A G 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=216;Dels=0.00;FS=11.973;HaplotypeScore=27.9283;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.349;QD=20.63;ReadPosRankSum=3.815;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:5,210:215:99:4456,477,0 chrXII 425939 . A T 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.545;HaplotypeScore=14.0905;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.527;QD=25.20;ReadPosRankSum=1.682;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3478,366,0 chrXII 426754 . A C 456 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=12.32;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:54:489,54,0 chrXII 426760 . G A 392 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=10.32;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:45:425,45,0 chrXII 426762 . A G 397 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=10.45;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:45:430,45,0 chrXII 426793 . A T 457 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=8.96;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:51:490,51,0 chrXII 426802 . C A 454 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=8.57;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:54:487,54,0 chrXII 426805 . T G 489 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=9.40;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:54:522,54,0 chrXII 426823 . T A 812 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=14.00;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:90:845,90,0 chrXII 426854 . T G 1325 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8686;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=20.70;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1358,144,0 chrXII 426989 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=23.14;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2625,285,0 chrXII 426999 . A T 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=4.040;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;MQRankSum=-0.397;QD=21.38;ReadPosRankSum=1.700;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2363,258,0 chrXII 427050 . G C 1507 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=15.07;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1540,168,0 chrXII 427051 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=15.82;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1599,168,0 chrXII 427079 . T A 1485 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=90.8518;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=15.00;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1518,159,0 chrXII 427110 . C A 1298 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=13.66;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1331,141,0 chrXII 427111 . A G 1263 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=13.29;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1296,141,0 chrXII 427205 . A T 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6742;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.512;QD=18.34;ReadPosRankSum=1.209;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2105,219,0 chrXII 427223 . T C 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.245;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=0.091;QD=18.84;ReadPosRankSum=1.702;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2200,243,0 chrXII 427327 . T G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.117;QD=24.35;ReadPosRankSum=1.648;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3053,327,0 chrXII 428048 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4015,441,0 chrXII 428127 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3173,330,0 chrXII 428166 . G C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9296;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.38;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3296,363,0 chrXII 428198 . G T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.21;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3317,348,0 chrXII 428263 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=2.990;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.803;QD=21.90;ReadPosRankSum=2.370;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2748,309,0 chrXII 428333 . C G 2568 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.05;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2601,288,0 chrXII 428405 . T A 3104 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3137,330,0 chrXII 429078 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=144;Dels=0.00;FS=5.276;HaplotypeScore=7.7734;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.598;QD=21.92;ReadPosRankSum=3.372;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:4,138:144:99:3190,348,0 chrXII 429313 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2537,264,0 chrXII 429444 . T A 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.282;QD=24.10;ReadPosRankSum=1.663;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2443,252,0 chrXII 429498 . C G 2537 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.06;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2570,279,0 chrXII 429550 . T C 2144 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.88;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2177,231,0 chrXII 429646 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.70;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2455,273,0 chrXII 429647 . T A 2649 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.26;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2682,279,0 chrXII 429675 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.07;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2442,255,0 chrXII 430007 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3309,360,0 chrXII 430049 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4609,498,0 chrXII 430241 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4513,460,0 chrXII 430703 . C A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3600,390,0 chrXII 431435 . T G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3383,363,0 chrXII 431555 . C A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.23;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4023,415,0 chrXII 431739 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=3.195;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.407;QD=22.73;ReadPosRankSum=1.642;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4387,477,0 chrXII 431853 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.4195;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.72;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4430,483,0 chrXII 431856 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.187;QD=21.89;ReadPosRankSum=1.697;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4334,463,0 chrXII 431957 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.23;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2878,306,0 chrXII 432008 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.23;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2666,288,0 chrXII 432434 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3939,432,0 chrXII 432537 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.9247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4204,450,0 chrXII 432798 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=137;Dels=0.00;FS=4.249;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.732;QD=25.21;ReadPosRankSum=1.680;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:3454,366,0 chrXII 433159 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.6477;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.14;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3283,345,0 chrXII 433420 . G C 4510.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.0540;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.79;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4510,507,0 chrXII 433564 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.35;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3988,412,0 chrXII 433567 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=189;Dels=0.00;FS=4.197;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-1.243;QD=19.53;ReadPosRankSum=1.713;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,183:189:99:3691,405,0 chrXII 433606 . G C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9495;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.237;QD=19.71;ReadPosRankSum=0.701;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3331,351,0 chrXII 433914 . T C 1285 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1318,147,0 chrXII 434144 . C G 1037 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=15.25;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1070,117,0 chrXII 434151 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=16.82;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1412,150,0 chrXII 434305 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.51;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2643,279,0 chrXII 434356 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.1177;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.26;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3614,376,0 chrXII 435003 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.11;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4436,460,0 chrXII 435366 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.59;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3660,384,0 chrXII 435396 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.61;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3888,403,0 chrXII 435552 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.895;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.091;QD=23.65;ReadPosRankSum=1.687;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3642,402,0 chrXII 435615 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8106;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.32;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3648,384,0 chrXII 435711 . G A 2805 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=21.58;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2838,297,0 chrXII 435717 . A G 2674 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=20.73;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2707,288,0 chrXII 435721 . T C 2465 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.188;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;MQRankSum=-0.845;QD=19.72;ReadPosRankSum=1.704;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2498,264,0 chrXII 435723 . G A 2361 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=18.89;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2394,261,0 chrXII 435756 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.40;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2208,246,0 chrXII 435774 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.74;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2225,228,0 chrXII 435837 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.31;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2688,282,0 chrXII 435951 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=22.58;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2855,300,0 chrXII 435960 . T A 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.317;QD=20.44;ReadPosRankSum=2.296;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2649,291,0 chrXII 436062 . T G 1920 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.59;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1953,204,0 chrXII 436084 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.76;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2309,243,0 chrXII 436179 . T C 2667 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.19;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2700,288,0 chrXII 436323 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=3.027;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.699;QD=22.84;ReadPosRankSum=2.408;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2728,303,0 chrXII 436389 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.077;DP=113;Dels=0.00;FS=3.288;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.671;QD=22.76;ReadPosRankSum=0.015;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2605,291,0 chrXII 436416 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.261;DP=100;Dels=0.00;FS=7.508;HaplotypeScore=10.7125;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.361;QD=21.46;ReadPosRankSum=0.560;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2179,237,0 chrXII 436622 . A T 2866 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.08;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2899,303,0 chrXII 436725 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.10;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2780,300,0 chrXII 436791 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.534;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=24.70;ReadPosRankSum=1.693;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2231,240,0 chrXII 437175 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2923,303,0 chrXII 437267 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.81;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2557,270,0 chrXII 437355 . A G 2450 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2483,279,0 chrXII 437472 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=6.306;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.056;QD=24.78;ReadPosRankSum=2.405;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2734,294,0 chrXII 437919 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=163;Dels=0.00;FS=2.908;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.038;QD=23.25;ReadPosRankSum=2.389;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3789,402,0 chrXII 438212 . C T 4616.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4616,484,0 chrXII 438353 . T A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3566,373,0 chrXII 438493 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.99;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3221,333,0 chrXII 438775 . G C 3872.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9260;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.90;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3872,420,0 chrXII 438877 . A G 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=3.776;HaplotypeScore=10.6560;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.365;QD=24.83;ReadPosRankSum=1.715;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4917,517,0 chrXII 438924 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4003;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.02;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4180,436,0 chrXII 439092 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=2.998;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.279;QD=23.81;ReadPosRankSum=2.424;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4523,478,0 chrXII 439126 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=176;Dels=0.00;FS=2.769;HaplotypeScore=16.8104;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=2.031;QD=21.94;ReadPosRankSum=2.408;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3861,423,0 chrXII 439182 . A C 4690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=200;Dels=0.00;FS=4.938;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.417;QD=23.45;ReadPosRankSum=3.372;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4690,516,0 chrXII 439413 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.28;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3036,315,0 chrXII 439452 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.00;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2747,285,0 chrXII 439511 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.968;QD=23.58;ReadPosRankSum=1.656;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3240,354,0 chrXII 439587 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=145;Dels=0.00;FS=3.039;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.042;QD=22.94;ReadPosRankSum=2.399;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3327,363,0 chrXII 439662 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=2.699;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.337;QD=24.24;ReadPosRankSum=2.388;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3854,423,0 chrXII 439707 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.69;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3316,363,0 chrXII 440337 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.11;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2156,234,0 chrXII 440952 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5178,547,0 chrXII 441152 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3518,366,0 chrXII 441632 . G C 2310 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.67;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2343,261,0 chrXII 442034 . G A 5269.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.06;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5269,550,0 chrXII 443030 . C T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.80;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4386,463,0 chrXII 443164 . C G 3810.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3810,414,0 chrXII 443985 . A T 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.078;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.283;QD=25.07;ReadPosRankSum=1.660;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4839,517,0 chrXII 444126 . A T 3144 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.82;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3177,330,0 chrXII 444175 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=5.012;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=24.87;ReadPosRankSum=1.705;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3265,342,0 chrXII 444569 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.87;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2570,267,0 chrXII 444593 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.22;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2610,273,0 chrXII 444668 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3636,381,0 chrXII 444806 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=133;Dels=0.00;FS=5.841;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=2.492;QD=23.07;ReadPosRankSum=2.852;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:3,126:133:99:3101,330,0 chrXII 445043 . G A 5266.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.9230;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.61;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5266,556,0 chrXII 445082 . A C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=3.097;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.892;QD=23.13;ReadPosRankSum=1.663;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4672,496,0 chrXII 445085 . C T 4583.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.92;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4583,484,0 chrXII 445132 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.87;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3610,370,0 chrXII 445150 . T G 3167 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.97;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3200,345,0 chrXII 445179 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.01;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3299,360,0 chrXII 445227 . T C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.2632;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.73;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3886,429,0 chrXII 445298 . G T 2490 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.49;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2523,276,0 chrXII 445923 . A G 5085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=225;Dels=0.00;FS=10.580;HaplotypeScore=19.6838;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.861;QD=22.60;ReadPosRankSum=2.951;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:5085,552,0 chrXII 447548 . A G 2272 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2213;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.50;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2305,246,0 chrXII 447928 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=2.603;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=1.466;QD=25.64;ReadPosRankSum=2.931;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2648,282,0 chrXII 448081 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=17.0641;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.69;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4075,424,0 chrXII 448114 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=17.2224;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=23.50;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4206,439,0 chrXII 448167 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=177;Dels=0.00;FS=3.024;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=1.060;QD=18.90;ReadPosRankSum=2.393;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3346,351,0 chrXII 448357 . T G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=4.035;HaplotypeScore=12.1098;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.430;QD=20.65;ReadPosRankSum=1.666;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3284,363,0 chrXII 448371 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=22.37;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3445,358,0 chrXII 448742 . A T 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.129;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=0.023;QD=22.59;ReadPosRankSum=1.685;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3343,345,0 chrXII 448751 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=0.000;QD=20.49;ReadPosRankSum=1.664;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3147,339,0 chrXII 448760 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=106.0834;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.28;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2974,309,0 chrXII 448855 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=25.35;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3151,330,0 chrXII 448923 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.09;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2876,297,0 chrXII 449021 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.24;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1389,156,0 chrXII 449028 . T A 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-1.108;QD=22.62;ReadPosRankSum=1.675;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1413,150,0 chrXII 449114 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1264,132,0 chrXII 449153 . A G 862 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.68;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:895,99,0 chrXII 449215 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.50;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1160,135,0 chrXII 449240 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.49;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1345,141,0 chrXII 449248 . A T 1438 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.20;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1471,156,0 chrXII 449654 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.11;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1753,189,0 chrXII 449836 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.85;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2218,228,0 chrXII 449837 . G C 2062 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.42;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2095,231,0 chrXII 449888 . C G 2014 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=10.9677;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.98;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2047,222,0 chrXII 449925 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=19.5284;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.42;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2324,246,0 chrXII 450044 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.51;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4541,478,0 chrXII 450128 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.49;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3527,367,0 chrXII 450178 . A T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.07;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4404,460,0 chrXII 450246 . C G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6222;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.85;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4113,441,0 chrXII 450398 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=25.93;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3501,363,0 chrXII 450452 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=23.11;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3061,333,0 chrXII 450506 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=23.02;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2542,267,0 chrXII 450537 . A T 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;MQRankSum=-0.630;QD=19.90;ReadPosRankSum=1.653;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1784,189,0 chrXII 450567 . G A 1386 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=18.00;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1419,153,0 chrXII 450572 . T A 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=17.42;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1235,135,0 chrXII 450573 . C T 1213 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=18.10;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1246,135,0 chrXII 450591 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=16.76;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1290,141,0 chrXII 450602 . T G 1238 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=17.19;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1271,138,0 chrXII 450619 . T A 1264 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=16.42;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1297,138,0 chrXII 450639 . T A 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.741;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;MQRankSum=-0.464;QD=16.59;ReadPosRankSum=1.683;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1211,129,0 chrXII 450663 . T A 914 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=3.8953;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=13.25;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:947,102,0 chrXII 450676 . A G 838 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=12.51;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:871,96,0 chrXII 450714 . A T 516 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=8.46;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:60:549,60,0 chrXII 450720 . A G 445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=6.154;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;MQRankSum=-1.680;QD=6.74;ReadPosRankSum=1.680;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:54:478,54,0 chrXII 450727 . A C 408 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=5.83;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:48:441,48,0 chrXII 450731 . A G 563 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=7.71;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:66:596,66,0 chrXII 450791 . T C 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;MQRankSum=-1.102;QD=18.49;ReadPosRankSum=1.706;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2474,270,0 chrXII 450821 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.90;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3230,339,0 chrXII 450835 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.29;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3227,339,0 chrXII 450889 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=18.87;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2430,261,0 chrXII 450896 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=18.45;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2229,243,0 chrXII 451109 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.02;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1174,123,0 chrXII 451494 . G C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=494;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.96;MQ0=490;QD=0.05;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:413,77:494:6:55,6,0 chrXII 459532 . C A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=128.0076;MLEAC=1;MLEAF=0.500;MQ=17.60;MQ0=650;MQRankSum=0.743;QD=0.07;ReadPosRankSum=-1.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:821,121:1000:99:100,0,3912 chrXII 459816 . T C 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.188;DP=1000;DS;Dels=0.01;FS=176.415;HaplotypeScore=415.1414;MLEAC=1;MLEAF=0.500;MQ=40.40;MQ0=2;MQRankSum=-0.223;QD=0.19;ReadPosRankSum=9.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:702,284:988:99:222,0,2696 chrXII 460417 . T A 775 filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.071;DP=1000;DS;Dels=0.00;FS=204.095;HaplotypeScore=798.2233;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;MQRankSum=-4.010;QD=0.77;ReadPosRankSum=10.738;SB=-5.513e+03 GT:AD:DP:GQ:PL 1/1:53,947:1000:92:808,92,0 chrXII 460447 . A C 265.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DP=1000;DS;Dels=0.00;FS=1.615;HaplotypeScore=166.0377;MLEAC=1;MLEAF=0.500;MQ=49.68;MQ0=0;MQRankSum=2.681;QD=0.27;ReadPosRankSum=0.621;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:835,119:1000:99:295,0,15438 chrXII 460505 . G A 22771.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=123.2194;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=22.77;SB=-7.484e+03 GT:AD:DP:GQ:PL 1/1:0,982:1000:99:22771,2423,0 chrXII 460631 . G C 2071.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.329;DP=1000;DS;Dels=0.00;FS=4.979;HaplotypeScore=67.1735;MLEAC=1;MLEAF=0.500;MQ=31.12;MQ0=78;MQRankSum=-9.575;QD=2.07;ReadPosRankSum=3.306;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:773,218:1000:99:2101,0,9207 chrXII 460659 . C T 3830.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.118;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=24.2856;MLEAC=1;MLEAF=0.500;MQ=30.52;MQ0=99;MQRankSum=-5.596;QD=3.83;ReadPosRankSum=0.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:575,424:1000:99:3830,0,4867 chrXII 460688 . A C 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.293;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=525.9527;MLEAC=1;MLEAF=0.500;MQ=29.13;MQ0=178;MQRankSum=0.890;QD=0.31;ReadPosRankSum=-6.735;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:890,90:1000:99:336,0,6873 chrXII 490443 . A G 1094 filter AC=2;AF=1.00;AN=2;BaseQRankSum=10.281;DP=148;DS;Dels=0.00;FS=419.147;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=1;MQRankSum=10.285;QD=7.39;ReadPosRankSum=10.082;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:86,61:148:99:1127,117,0 chrXII 490487 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=18.34;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1720,180,0 chrXII 490736 . T G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.346;QD=24.47;ReadPosRankSum=1.703;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2994,333,0 chrXII 490778 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.702;QD=23.57;ReadPosRankSum=1.701;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2649,285,0 chrXII 490779 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.95;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2691,288,0 chrXII 490822 . G C 2641 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.47;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2674,288,0 chrXII 490994 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=24.65;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3303,357,0 chrXII 491056 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=19.40;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2458,255,0 chrXII 491075 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=15.36;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1984,213,0 chrXII 491084 . T C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.291;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=-1.651;QD=14.50;ReadPosRankSum=1.705;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1889,207,0 chrXII 491106 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=16.61;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2359,243,0 chrXII 491119 . C G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;MQRankSum=-0.611;QD=17.24;ReadPosRankSum=1.408;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2429,246,0 chrXII 491269 . A G 3157 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=21.48;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3190,342,0 chrXII 491270 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=146;Dels=0.00;FS=11.282;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=-0.069;QD=21.71;ReadPosRankSum=2.952;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3202,342,0 chrXII 491307 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=20.29;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2772,300,0 chrXII 491511 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=67.4821;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=16.54;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1472,165,0 chrXII 491674 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=18.12;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1392,159,0 chrXII 491685 . T G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;MQRankSum=-0.722;QD=16.25;ReadPosRankSum=-0.385;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1203,132,0 chrXII 491704 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=12.67;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1047,114,0 chrXII 491710 . G T 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.109;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=-0.183;QD=13.49;ReadPosRankSum=1.406;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1180,129,0 chrXII 491770 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=15.03;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1686,183,0 chrXII 491810 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=2.999;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.406;QD=21.77;ReadPosRankSum=2.406;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2471,267,0 chrXII 491842 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=18.74;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1926,213,0 chrXII 491851 . A T 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=-1.389;QD=17.80;ReadPosRankSum=0.960;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1991,219,0 chrXII 491881 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=113;Dels=0.00;FS=2.950;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=-0.229;QD=18.38;ReadPosRankSum=2.188;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2110,228,0 chrXII 491896 . T A 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.417;QD=19.50;ReadPosRankSum=1.700;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2158,231,0 chrXII 492575 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2285,249,0 chrXII 493579 . A G 5019.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5019,546,0 chrXII 493681 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.01;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3625,378,0 chrXII 493693 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.23;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3481,378,0 chrXII 493774 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3880,420,0 chrXII 493842 . C A 2822 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.9260;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.38;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2855,297,0 chrXII 493918 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=164;Dels=0.00;FS=3.206;HaplotypeScore=20.9752;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.970;QD=22.69;ReadPosRankSum=1.689;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,158:164:99:3721,393,0 chrXII 494317 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.66;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1830,192,0 chrXII 494321 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.40;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1828,192,0 chrXII 494491 . A G 2545 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.14;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2578,279,0 chrXII 494709 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.09;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2765,300,0 chrXII 494711 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.94;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2923,306,0 chrXII 495002 . C G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.18;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3385,366,0 chrXII 495344 . A C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=167;Dels=0.00;FS=6.083;HaplotypeScore=9.5715;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=-0.230;QD=23.67;ReadPosRankSum=2.934;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3953,426,0 chrXII 495807 . A G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.307;QD=24.34;ReadPosRankSum=1.634;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2613,282,0 chrXII 496218 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=22.87;ReadPosRankSum=1.653;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2068,222,0 chrXII 496434 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4059,415,0 chrXII 496835 . A G 2547 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.73;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2580,276,0 chrXII 497835 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.917;QD=24.19;ReadPosRankSum=1.712;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4160,456,0 chrXII 497943 . G A 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.858;HaplotypeScore=4.9014;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.307;QD=22.04;ReadPosRankSum=-0.184;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3162,345,0 chrXII 497970 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3529,387,0 chrXII 498294 . T A 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=87;Dels=0.00;FS=6.173;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.496;QD=24.84;ReadPosRankSum=2.365;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2194,228,0 chrXII 498323 . T C 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.003;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.620;QD=21.56;ReadPosRankSum=1.620;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2038,225,0 chrXII 498457 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.074;QD=24.09;ReadPosRankSum=1.697;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2442,270,0 chrXII 498746 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.11;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1682,177,0 chrXII 498921 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=5.423;HaplotypeScore=12.5779;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.625;QD=24.11;ReadPosRankSum=1.704;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2999,324,0 chrXII 499674 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3422,378,0 chrXII 500139 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.44;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3348,351,0 chrXII 500275 . G T 2523 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.13;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2556,270,0 chrXII 500366 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.74;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3167,339,0 chrXII 500416 . C G 3010 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.97;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3043,330,0 chrXII 500417 . C G 3107 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.19;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3140,333,0 chrXII 500491 . C G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.94;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4059,430,0 chrXII 500587 . A G 5311.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.03;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5311,576,0 chrXII 500833 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=8.849;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.533;QD=23.30;ReadPosRankSum=2.399;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4496,475,0 chrXII 501100 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0129;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3339,354,0 chrXII 502072 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6879;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.39;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4398,463,0 chrXII 502281 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1932;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.06;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3344,348,0 chrXII 502331 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.39;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3438,375,0 chrXII 502353 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.948;HaplotypeScore=4.2608;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.960;QD=23.56;ReadPosRankSum=1.707;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3275,360,0 chrXII 502411 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.280;QD=24.53;ReadPosRankSum=1.702;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2854,303,0 chrXII 502531 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.12;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3217,336,0 chrXII 502604 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.74;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2709,294,0 chrXII 502625 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.43;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3836,400,0 chrXII 502894 . A T 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.814;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.523;QD=23.84;ReadPosRankSum=2.416;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3528,372,0 chrXII 502957 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7160;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.772;QD=21.72;ReadPosRankSum=-1.124;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,147:153:99:3323,363,0 chrXII 503086 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.63;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1730,186,0 chrXII 503193 . A G 2468 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.50;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2501,264,0 chrXII 503204 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.05;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2592,267,0 chrXII 503277 . G C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.89;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4085,435,0 chrXII 503302 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.50;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4430,486,0 chrXII 503313 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.42;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4685,490,0 chrXII 503512 . G C 7062.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=20.7004;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.96;SB=-4.149e+03 GT:AD:DP:GQ:PL 1/1:0,332:337:99:7062,774,0 chrXII 503635 . C T 6359.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.64;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6359,664,0 chrXII 503710 . A G 6235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=269;Dels=0.00;FS=5.651;HaplotypeScore=11.7134;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.556;QD=23.18;ReadPosRankSum=2.974;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:6235,684,0 chrXII 503785 . T C 6382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.016;DP=286;Dels=0.00;FS=18.961;HaplotypeScore=23.2675;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.113;QD=22.31;ReadPosRankSum=4.072;SB=-3.511e+03 GT:AD:DP:GQ:PL 1/1:6,277:286:99:6382,699,0 chrXII 504004 . T C 6098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=254;Dels=0.00;FS=3.203;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.143;QD=24.01;ReadPosRankSum=1.718;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:6098,658,0 chrXII 504088 . C G 5602.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.7441;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.25;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5602,618,0 chrXII 504211 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.64;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4302,451,0 chrXII 504236 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.19;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3815,414,0 chrXII 504352 . T A 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=13.2208;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;MQRankSum=-1.121;QD=24.24;ReadPosRankSum=1.671;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4145,427,0 chrXII 504507 . A G 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.522;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.023;QD=24.43;ReadPosRankSum=1.692;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4178,453,0 chrXII 504583 . A T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=12.9198;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.58;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4380,480,0 chrXII 504665 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=7.628;HaplotypeScore=12.5463;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.361;QD=24.05;ReadPosRankSum=2.344;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4522,489,0 chrXII 504701 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.14;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3963,438,0 chrXII 505016 . C T 5219.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.36;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5219,544,0 chrXII 505064 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.84;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3695,405,0 chrXII 505089 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8316;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.71;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3974,420,0 chrXII 505154 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1568;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.15;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4653,487,0 chrXII 505346 . T C 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=2.899;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.031;QD=24.16;ReadPosRankSum=2.423;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4542,495,0 chrXII 505622 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=4.037;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=-0.570;QD=24.02;ReadPosRankSum=1.664;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3651,393,0 chrXII 505760 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7683;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.90;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2227,249,0 chrXII 505937 . T A 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.529;QD=21.75;ReadPosRankSum=1.664;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1142,120,0 chrXII 506556 . C T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.06;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5237,541,0 chrXII 507075 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.16;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5766,607,0 chrXII 507213 . G A 6276.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=17.2621;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.42;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6276,652,0 chrXII 507486 . A C 1921 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.1792;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=14.55;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1954,213,0 chrXII 507812 . A G 2082 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.49;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2115,237,0 chrXII 507917 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2402,249,0 chrXII 507953 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.96;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2621,294,0 chrXII 508024 . A G 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.644;QD=22.33;ReadPosRankSum=1.703;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2757,297,0 chrXII 508028 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.50;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2735,285,0 chrXII 508091 . T C 1843 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.75;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1876,204,0 chrXII 508184 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.15;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1242,135,0 chrXII 508274 . C T 501 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.28;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:57:534,57,0 chrXII 508294 . G A 515 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.39;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:548,57,0 chrXII 508385 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.41;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1400,147,0 chrXII 508472 . T A 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.169;QD=24.37;ReadPosRankSum=1.646;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1983,210,0 chrXII 508529 . T A 2723 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.10;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2756,291,0 chrXII 508611 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2583,270,0 chrXII 508649 . T C 2211 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.79;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2244,249,0 chrXII 508718 . G T 3062 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7926;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.92;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3095,327,0 chrXII 508853 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.86;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3555,390,0 chrXII 508892 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.47;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4307,459,0 chrXII 508920 . G T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.25;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4627,490,0 chrXII 508979 . C T 5365.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.07;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5365,565,0 chrXII 509042 . C T 6673.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.3975;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.17;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6673,691,0 chrXII 509279 . G A 6963.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.88;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6963,718,0 chrXII 509324 . T C 6213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=262;Dels=0.00;FS=9.118;HaplotypeScore=13.1847;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.303;QD=23.71;ReadPosRankSum=3.428;SB=-3.464e+03 GT:AD:DP:GQ:PL 1/1:4,258:262:99:6213,655,0 chrXII 509342 . G A 5771.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.5008;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.95;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5771,604,0 chrXII 509438 . A C 5887.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.1432;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.64;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5887,639,0 chrXII 509612 . C A 6638.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=14.3122;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.20;SB=-3.599e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:6638,729,0 chrXII 509642 . G A 6681.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=19.2691;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6681,724,0 chrXII 509796 . G C 6301.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=19.7575;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.91;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6301,705,0 chrXII 510379 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.7355;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.58;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3560,387,0 chrXII 510469 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=5.9818;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-0.102;QD=14.77;ReadPosRankSum=1.677;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:2810,312,0 chrXII 510486 . T A 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.4926;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=0.034;QD=14.00;ReadPosRankSum=1.681;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:2860,312,0 chrXII 510507 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.14;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4190,436,0 chrXII 510559 . C T 5752.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.38;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5752,598,0 chrXII 510901 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1312;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.38;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4104,430,0 chrXII 511071 . A C 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.420;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.676;QD=23.12;ReadPosRankSum=1.715;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4671,502,0 chrXII 511197 . C T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7229;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.45;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4596,513,0 chrXII 511269 . G A 5304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.053;DP=221;Dels=0.00;FS=2.959;HaplotypeScore=11.5290;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.163;QD=24.00;ReadPosRankSum=-1.166;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:2,216:221:99:5304,533,0 chrXII 511340 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.48;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:5057,526,0 chrXII 511773 . C T 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=155;Dels=0.00;FS=3.825;HaplotypeScore=16.0004;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.456;QD=17.05;ReadPosRankSum=-0.046;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:2676,279,0 chrXII 511884 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2902,303,0 chrXII 513001 . A T 270 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.349;QD=15.00;ReadPosRankSum=1.542;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:30:303,30,0 chrXII 513012 . C T 319 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.79;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:352,36,0 chrXII 513649 . C T 7246.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.23;SB=-4.492e+03 GT:AD:DP:GQ:PL 1/1:0,326:326:99:7246,757,0 chrXII 513651 . T C 6745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=332;Dels=0.00;FS=9.111;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.040;QD=20.32;ReadPosRankSum=2.942;SB=-4.294e+03 GT:AD:DP:GQ:PL 1/1:3,324:332:99:6745,735,0 chrXII 513765 . G C 5590.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.82;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5590,589,0 chrXII 514236 . T C 3969.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=6.086;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.641;QD=19.75;ReadPosRankSum=2.388;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:3969,429,0 chrXII 514237 . A C 3891.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.149;QD=19.65;ReadPosRankSum=1.714;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3891,420,0 chrXII 514238 . A T 3927.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.245;QD=19.73;ReadPosRankSum=1.645;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:3927,417,0 chrXII 514581 . G C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.2096;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.25;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,197:199:99:3632,399,0 chrXII 514634 . A T 5867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=21.4759;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.166;QD=20.37;ReadPosRankSum=2.424;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,286:288:99:5867,613,0 chrXII 514832 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.02;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2896,312,0 chrXII 514845 . A C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.298;QD=20.56;ReadPosRankSum=1.678;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2726,291,0 chrXII 514922 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.5901;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.64;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1938,204,0 chrXII 514979 . A G 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=8.7125;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.589;QD=7.91;ReadPosRankSum=1.696;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,99:105:99:871,102,0 chrXII 515006 . C G 1488 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.4397;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=15.66;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1521,171,0 chrXII 515081 . C A 1799 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.06;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1832,198,0 chrXII 515236 . C G 3171 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1920;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.02;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3204,345,0 chrXII 515450 . G A 6620.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.7155;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.66;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6620,697,0 chrXII 515516 . T A 5941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=248;Dels=0.00;FS=3.028;HaplotypeScore=18.4823;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.430;QD=23.96;ReadPosRankSum=2.400;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5941,600,0 chrXII 515570 . T C 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=276;Dels=0.00;FS=8.987;HaplotypeScore=25.4590;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.143;QD=21.23;ReadPosRankSum=3.423;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:4,271:276:99:5859,645,0 chrXII 516197 . G A 8115.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=19.4300;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.45;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:0,344:346:99:8115,844,0 chrXII 516236 . G T 6138.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.57;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6138,658,0 chrXII 516896 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=22.6195;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.91;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4789,508,0 chrXII 517094 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.26;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4073,441,0 chrXII 517114 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.112;QD=20.55;ReadPosRankSum=1.716;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4501,489,0 chrXII 517338 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=180;Dels=0.00;FS=6.858;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.580;QD=24.20;ReadPosRankSum=2.422;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4356,460,0 chrXII 517747 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.7518;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.615;QD=20.26;ReadPosRankSum=-0.214;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1856,201,0 chrXII 518231 . G C 2718 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.23;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2751,306,0 chrXII 518290 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=4.325;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.671;QD=23.41;ReadPosRankSum=1.670;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,110:114:99:2702,279,0 chrXII 518452 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=5.105;HaplotypeScore=17.4797;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=23.63;ReadPosRankSum=1.711;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3875,426,0 chrXII 518617 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=3.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.580;QD=23.70;ReadPosRankSum=2.408;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4218,462,0 chrXII 519157 . A T 1888 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6731;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.95;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1921,204,0 chrXII 519163 . G T 1705 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.05;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1738,192,0 chrXII 519349 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.32;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3292,342,0 chrXII 519431 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.07;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3506,372,0 chrXII 519439 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.90;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3412,369,0 chrXII 519646 . A C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2226;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.667;QD=24.75;ReadPosRankSum=1.710;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3935,423,0 chrXII 519666 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=149;Dels=0.00;FS=12.581;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.804;QD=24.42;ReadPosRankSum=3.341;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3638,390,0 chrXII 519688 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.9391;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.33;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3504,369,0 chrXII 520061 . C A 2301 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.01;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2334,243,0 chrXII 520933 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=132;Dels=0.00;FS=6.072;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.147;QD=21.10;ReadPosRankSum=1.225;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2818,309,0 chrXII 521380 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.93;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2763,309,0 chrXII 521689 . A T 7800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=304;Dels=0.00;FS=5.862;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.564;QD=25.66;ReadPosRankSum=2.931;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:3,301:304:99:7800,811,0 chrXII 521975 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=208;Dels=0.00;FS=5.816;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.155;QD=21.88;ReadPosRankSum=2.928;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4551,489,0 chrXII 521988 . G T 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=4.035;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.039;QD=21.92;ReadPosRankSum=-0.240;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4319,457,0 chrXII 522608 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.9043;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.168;QD=23.94;ReadPosRankSum=1.710;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3711,402,0 chrXII 522914 . G C 4499.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.2168;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.19;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4499,486,0 chrXII 522946 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=195;Dels=0.00;FS=5.527;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.662;QD=21.67;ReadPosRankSum=2.964;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4226,450,0 chrXII 523174 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2805,300,0 chrXII 524918 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3410,360,0 chrXII 525196 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.39;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5788,598,0 chrXII 525385 . T G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0633;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.60;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4305,462,0 chrXII 525539 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2602;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=27.41;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4139,430,0 chrXII 525791 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.685;QD=22.55;ReadPosRankSum=1.708;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3293,319,0 chrXII 525800 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.61;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2959,324,0 chrXII 526116 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=8.595;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.699;QD=22.99;ReadPosRankSum=2.393;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4000,429,0 chrXII 526230 . A T 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=10.2400;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.071;QD=22.70;ReadPosRankSum=1.653;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3007,318,0 chrXII 526265 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.18;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2850,300,0 chrXII 526397 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.93;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3333,348,0 chrXII 526414 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.88;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3386,352,0 chrXII 526550 . T A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.33;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3650,387,0 chrXII 526685 . C G 4195.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.6461;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.43;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4195,456,0 chrXII 526779 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=25.68;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3903,414,0 chrXII 526817 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.101;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.554;QD=21.92;ReadPosRankSum=1.661;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4296,445,0 chrXII 526820 . C T 4156.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.42;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4156,436,0 chrXII 526847 . T A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.64;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3880,403,0 chrXII 526922 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.82;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3160,342,0 chrXII 527012 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.449;QD=24.46;ReadPosRankSum=1.647;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3963,421,0 chrXII 527111 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.635;QD=24.67;ReadPosRankSum=1.615;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4416,469,0 chrXII 527582 . G C 4851.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.1671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4851,523,0 chrXII 527715 . T C 6094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=265;Dels=0.00;FS=3.882;HaplotypeScore=23.7529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.774;QD=23.00;ReadPosRankSum=1.719;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6094,660,0 chrXII 527873 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3320;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.36;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2823,291,0 chrXII 528191 . T A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.19;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3535,364,0 chrXII 528743 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=3.207;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.067;QD=19.03;ReadPosRankSum=1.715;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:3901,432,0 chrXII 528749 . T A 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.112;QD=18.99;ReadPosRankSum=1.715;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3835,417,0 chrXII 528800 . A T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2579;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.67;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4052,424,0 chrXII 529055 . G A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.24;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5300,550,0 chrXII 529568 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.406;DP=167;Dels=0.00;FS=8.520;HaplotypeScore=8.1202;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.323;QD=20.19;ReadPosRankSum=3.385;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:3371,360,0 chrXII 529574 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=8.1289;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.61;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3334,363,0 chrXII 529586 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=4.027;HaplotypeScore=13.3524;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.742;QD=19.12;ReadPosRankSum=1.713;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3480,372,0 chrXII 529715 . C T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.9499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.81;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5620,601,0 chrXII 530015 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=177;Dels=0.00;FS=3.429;HaplotypeScore=12.1696;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.239;QD=24.25;ReadPosRankSum=0.876;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4293,428,0 chrXII 530174 . T C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.3160;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.740;QD=24.45;ReadPosRankSum=1.716;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:5208,559,0 chrXII 530261 . C T 6083.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.5618;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.03;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6083,643,0 chrXII 530350 . T G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=5.286;HaplotypeScore=10.1612;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.319;QD=22.12;ReadPosRankSum=1.674;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4003,429,0 chrXII 530377 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.25;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4339,454,0 chrXII 530558 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.47;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1548,165,0 chrXII 530692 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:57:556,57,0 chrXII 530730 . T A 193.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=12.87;ReadPosRankSum=1.504;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:24:226,24,0 chrXII 530780 . T A 1466 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1499,153,0 chrXII 531361 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=192;Dels=0.00;FS=2.809;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.122;QD=19.81;ReadPosRankSum=2.386;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3803,423,0 chrXII 531751 . T C 2481 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.85;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2514,279,0 chrXII 531796 . T A 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=6.920;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.619;QD=23.93;ReadPosRankSum=2.416;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3542,370,0 chrXII 531847 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.693;QD=22.60;ReadPosRankSum=1.709;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3412,378,0 chrXII 532084 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.28;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3725,408,0 chrXII 532146 . T G 4437.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.7367;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.73;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4437,495,0 chrXII 532255 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=3.906;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.147;QD=22.97;ReadPosRankSum=1.673;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4157,456,0 chrXII 532381 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.389;QD=24.18;ReadPosRankSum=1.714;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4740,508,0 chrXII 532540 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1721;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.31;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4009,432,0 chrXII 532555 . C G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.59;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4128,441,0 chrXII 532723 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.41;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3910,409,0 chrXII 532747 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=155;Dels=0.00;FS=11.239;HaplotypeScore=6.4764;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.708;QD=22.72;ReadPosRankSum=2.955;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3522,384,0 chrXII 532789 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.14;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3597,372,0 chrXII 532861 . A G 3134 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.07;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3167,342,0 chrXII 532984 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5034;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.651;QD=21.79;ReadPosRankSum=1.705;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2844,309,0 chrXII 533081 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=144;Dels=0.00;FS=6.176;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.636;QD=23.78;ReadPosRankSum=2.398;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3424,363,0 chrXII 533801 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=138;Dels=0.00;FS=9.156;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.339;QD=22.28;ReadPosRankSum=3.292;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:4,133:138:99:3107,339,0 chrXII 535435 . G A 4843.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=26.04;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4843,493,0 chrXII 539624 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2433;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.56;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2361,249,0 chrXII 542154 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.25;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2725,282,0 chrXII 543141 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=4.591;HaplotypeScore=12.4770;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.497;QD=20.32;ReadPosRankSum=1.673;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2471,264,0 chrXII 543240 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.565;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.947;QD=24.28;ReadPosRankSum=1.686;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3642,384,0 chrXII 543480 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.5922;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.09;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2683,276,0 chrXII 545567 . A C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=145;Dels=0.00;FS=6.061;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.451;QD=25.31;ReadPosRankSum=2.910;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3670,396,0 chrXII 545673 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.97;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3332,351,0 chrXII 548327 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2453,264,0 chrXII 548451 . A G 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=21.48;ReadPosRankSum=1.661;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2181,243,0 chrXII 548551 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.75;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2805,291,0 chrXII 548840 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.14;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2906,300,0 chrXII 548949 . C G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3738,405,0 chrXII 549297 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.42;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2723,294,0 chrXII 549539 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=11.217;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.068;QD=24.70;ReadPosRankSum=2.411;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3145,342,0 chrXII 550373 . A C 554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DP=87;Dels=0.00;FS=1.874;HaplotypeScore=10.5561;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.085;QD=6.37;ReadPosRankSum=0.301;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:5,82:87:3:584,3,0 chrXII 551811 . G A 5657.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.07;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5657,598,0 chrXII 552056 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.9076;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.600;QD=23.03;ReadPosRankSum=1.710;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3638,405,0 chrXII 552323 . T G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.705;QD=22.67;ReadPosRankSum=1.717;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5350,606,0 chrXII 552708 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.03;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1274,138,0 chrXII 552832 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=26.79;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2685,279,0 chrXII 552874 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.13;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3218,348,0 chrXII 552927 . C T 4840.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.73;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4840,511,0 chrXII 553063 . A G 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=223;Dels=0.00;FS=3.686;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.811;QD=22.09;ReadPosRankSum=1.701;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4925,523,0 chrXII 553070 . T A 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.0229;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-1.481;QD=21.41;ReadPosRankSum=1.716;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4731,493,0 chrXII 553129 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.7460;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.50;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4524,478,0 chrXII 553147 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.5135;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.43;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4658,510,0 chrXII 553703 . G A 556 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=150.1392;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=3.16;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:69:589,69,0 chrXII 553705 . G A 613 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=151.7165;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=3.37;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:75:646,75,0 chrXII 553802 . G A 7096.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.53;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:7096,727,0 chrXII 554133 . C T 6250.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6250,652,0 chrXII 554204 . C T 5827.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.50;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5827,616,0 chrXII 554261 . C T 5916.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.07;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5916,622,0 chrXII 554450 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.5194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3732,405,0 chrXII 554490 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.33;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4129,450,0 chrXII 554694 . C G 5495.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.25;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5495,603,0 chrXII 554931 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.86;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4798,505,0 chrXII 554937 . A G 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=243;Dels=0.00;FS=2.951;HaplotypeScore=9.4213;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.496;QD=19.65;ReadPosRankSum=2.419;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:2,238:243:99:4775,510,0 chrXII 555432 . T G 6606.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.2478;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.02;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6606,732,0 chrXII 555993 . A G 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.698;QD=23.35;ReadPosRankSum=1.715;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4717,522,0 chrXII 556056 . C T 5088.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.1834;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.67;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5088,538,0 chrXII 556347 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=16.00;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2513,258,0 chrXII 556350 . G A 2639 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5700;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2672,279,0 chrXII 556427 . C G 2040 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:113:99:2073,228,0 chrXII 556879 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3310,348,0 chrXII 556961 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=23.65;ReadPosRankSum=1.709;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3524,372,0 chrXII 557014 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.88;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3391,352,0 chrXII 557324 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.144;QD=22.60;ReadPosRankSum=1.667;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3593,384,0 chrXII 557420 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=204;Dels=0.00;FS=10.273;HaplotypeScore=12.7558;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.116;QD=23.01;ReadPosRankSum=2.934;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:3,197:204:99:4695,510,0 chrXII 557852 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=24.65;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4709,487,0 chrXII 557861 . C G 4203.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.48;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4203,456,0 chrXII 557979 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.94;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3492,366,0 chrXII 558665 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.68;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4673,490,0 chrXII 558945 . C T 5544.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.10;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5544,586,0 chrXII 559252 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=31.0436;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.15;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3078,330,0 chrXII 559511 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.07;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3731,411,0 chrXII 559541 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.69;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4241,456,0 chrXII 559667 . A G 4807.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.91;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4807,514,0 chrXII 559835 . T C 5844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.034;DP=256;Dels=0.00;FS=3.027;HaplotypeScore=24.3417;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.208;QD=22.83;ReadPosRankSum=2.353;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:5844,625,0 chrXII 559898 . G A 5405.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.90;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5405,582,0 chrXII 560024 . C T 6144.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-3.346e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6144,643,0 chrXII 560519 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1803,186,0 chrXII 561785 . T G 2876 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2909,309,0 chrXII 561975 . T A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.11;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3838,403,0 chrXII 562046 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=149;Dels=0.00;FS=13.208;HaplotypeScore=9.1064;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.680;QD=23.28;ReadPosRankSum=3.376;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:4,144:149:99:3469,378,0 chrXII 562070 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.628;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.334;QD=23.49;ReadPosRankSum=1.669;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3899,412,0 chrXII 562305 . C G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.13;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3839,403,0 chrXII 563186 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.007;QD=21.98;ReadPosRankSum=2.362;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3737,402,0 chrXII 563207 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.07;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3217,345,0 chrXII 563208 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.459;QD=19.07;ReadPosRankSum=1.649;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3199,345,0 chrXII 563516 . T C 318 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=30;Dels=0.00;FS=14.472;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=1.238;QD=10.60;ReadPosRankSum=0.990;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:1,27:30:39:351,39,0 chrXII 563530 . G T 70.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=3.92;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,15:18:12:103,12,0 chrXII 563582 . C A 1484 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1517,171,0 chrXII 566109 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.3647;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.27;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,186:191:99:4445,466,0 chrXII 567144 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.57;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4276,451,0 chrXII 567569 . A G 4761.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4761,525,0 chrXII 567957 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.93;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2285,243,0 chrXII 568114 . A T 3048 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0652;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.58;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3081,330,0 chrXII 568338 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.9997;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.90;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2282,261,0 chrXII 568449 . A T 2918 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.62;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2951,321,0 chrXII 568546 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.83;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3995,421,0 chrXII 568917 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=2.839;HaplotypeScore=9.5275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=23.98;ReadPosRankSum=2.387;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3836,417,0 chrXII 569539 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2601,279,0 chrXII 569926 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.63;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3058,342,0 chrXII 570032 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3898,397,0 chrXII 570428 . A C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3518,381,0 chrXII 570676 . T C 2027 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.11;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2060,219,0 chrXII 570786 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.667;QD=25.24;ReadPosRankSum=1.699;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2708,291,0 chrXII 570914 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.50;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3170,330,0 chrXII 571412 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.00;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5040,520,0 chrXII 571751 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=2.869;HaplotypeScore=6.3875;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.343;QD=23.58;ReadPosRankSum=2.274;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3325,360,0 chrXII 571772 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=137;Dels=0.00;FS=5.653;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.682;QD=23.36;ReadPosRankSum=2.904;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:3234,345,0 chrXII 571809 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=24.36;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3151,322,0 chrXII 571826 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.83;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2679,294,0 chrXII 572011 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.96;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2214,234,0 chrXII 572164 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.138;DP=143;Dels=0.00;FS=2.420;HaplotypeScore=7.5060;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.042;QD=23.68;ReadPosRankSum=3.397;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:4,138:143:99:3386,366,0 chrXII 572186 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.198;HaplotypeScore=4.6583;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.308;QD=23.49;ReadPosRankSum=1.657;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3288,369,0 chrXII 572294 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.56;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2749,306,0 chrXII 572946 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4392,466,0 chrXII 574950 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=161;Dels=0.00;FS=9.182;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.223;QD=22.71;ReadPosRankSum=3.404;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:4,155:161:99:3657,390,0 chrXII 575257 . C A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.88;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4130,430,0 chrXII 575473 . T G 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.9861;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.245;QD=23.16;ReadPosRankSum=1.713;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4261,471,0 chrXII 576016 . G A 7503.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=28.8711;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-4.399e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:7503,784,0 chrXII 578434 . C G 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2345,249,0 chrXII 578642 . T G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.607;QD=23.24;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3263,348,0 chrXII 583427 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.617;HaplotypeScore=12.0151;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.299;QD=23.81;ReadPosRankSum=-0.697;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4404,466,0 chrXII 585709 . A T 2234 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.68;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2267,240,0 chrXII 585771 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.42;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1649,174,0 chrXII 585940 . A G 601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.975;DP=93;Dels=0.00;FS=4.846;HaplotypeScore=38.8948;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=3.065;QD=6.46;ReadPosRankSum=-0.557;SB=-5.318e+02 GT:AD:DP:GQ:PL 1/1:27,63:93:64:634,64,0 chrXII 586255 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=2.725;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.370;QD=23.41;ReadPosRankSum=2.398;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3418,366,0 chrXII 587884 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.05;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3490,361,0 chrXII 589339 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.789;QD=24.94;ReadPosRankSum=1.661;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3666,396,0 chrXII 589563 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=112;Dels=0.02;FS=2.633;HaplotypeScore=7.4425;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.171;QD=22.37;ReadPosRankSum=2.404;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2539,279,0 chrXII 590028 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.047;QD=24.14;ReadPosRankSum=1.694;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2254,243,0 chrXII 590160 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2266,246,0 chrXII 590505 . T G 2477 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2510,276,0 chrXII 591438 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.9761;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.494;QD=21.91;ReadPosRankSum=1.596;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2290,249,0 chrXII 591465 . A T 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=94;Dels=0.00;FS=6.138;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.570;QD=21.54;ReadPosRankSum=2.689;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2058,213,0 chrXII 591568 . G T 1773 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.96;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1806,189,0 chrXII 591955 . G T 1689 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.22;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1722,177,0 chrXII 591973 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.43;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1662,174,0 chrXII 592135 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.17;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2388,258,0 chrXII 592198 . T G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=110;Dels=0.00;FS=6.473;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.095;QD=20.35;ReadPosRankSum=2.337;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2272,249,0 chrXII 592199 . T A 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=6.385;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.168;QD=21.69;ReadPosRankSum=2.405;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2419,249,0 chrXII 592315 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.347;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.577;QD=22.07;ReadPosRankSum=1.603;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2991,327,0 chrXII 592353 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.76;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2234,246,0 chrXII 592468 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.68;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3283,345,0 chrXII 592578 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=23.46;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2590,273,0 chrXII 592686 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9275;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.24;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1919,201,0 chrXII 592760 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.41;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2252,249,0 chrXII 592872 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.26;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2637,291,0 chrXII 593087 . C A 2963 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=23.15;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2996,321,0 chrXII 599111 . T G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=2.783;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.996;QD=17.75;ReadPosRankSum=2.387;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1435,156,0 chrXII 599206 . A C 2496 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=24.47;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2529,273,0 chrXII 599232 . T A 2373 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=22.82;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2406,252,0 chrXII 599333 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=25.48;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3312,340,0 chrXII 599406 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.29;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2486,261,0 chrXII 599437 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.91;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2926,321,0 chrXII 599482 . G T 3033 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=114.4911;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=21.98;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3066,321,0 chrXII 599529 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=119;Dels=0.02;FS=2.992;HaplotypeScore=46.6147;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.931;QD=17.50;ReadPosRankSum=2.407;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2116,228,0 chrXII 599558 . A C 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=6.251;HaplotypeScore=11.8762;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.911;QD=17.22;ReadPosRankSum=2.398;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1703,189,0 chrXII 599677 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.679;QD=20.06;ReadPosRankSum=1.698;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2079,225,0 chrXII 599691 . A G 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.018;QD=16.57;ReadPosRankSum=1.623;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1624,177,0 chrXII 599718 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.79;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1937,213,0 chrXII 599905 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.58;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2485,255,0 chrXII 600169 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.68;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3505,364,0 chrXII 600238 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.52;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4456,466,0 chrXII 600445 . T G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=6.873;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.449;QD=22.79;ReadPosRankSum=2.416;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3305,357,0 chrXII 600547 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3348,351,0 chrXII 600676 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.625;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.054;QD=24.47;ReadPosRankSum=1.689;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3891,420,0 chrXII 601080 . C T 4662.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4662,481,0 chrXII 601489 . A G 5893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=247;Dels=0.00;FS=4.024;HaplotypeScore=8.2787;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.304;QD=23.86;ReadPosRankSum=1.039;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5893,634,0 chrXII 601624 . G A 6258.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.74;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6258,643,0 chrXII 601888 . A G 6820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=285;Dels=0.00;FS=3.327;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.293;QD=23.93;ReadPosRankSum=1.671;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:6820,739,0 chrXII 601934 . C T 7680.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=14.9721;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.35;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:7680,808,0 chrXII 602094 . A G 6900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=294;Dels=0.00;FS=2.623;HaplotypeScore=17.4332;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.110;QD=23.47;ReadPosRankSum=2.433;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:2,291:294:99:6900,739,0 chrXII 602186 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=147;Dels=0.00;FS=2.900;HaplotypeScore=17.4044;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.418;QD=22.54;ReadPosRankSum=2.347;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3314,354,0 chrXII 602338 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.2382;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.31;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4151,430,0 chrXII 602976 . G T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.92;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3427,384,0 chrXII 602997 . G C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=19.75;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3338,354,0 chrXII 603006 . A T 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-0.784;QD=18.77;ReadPosRankSum=1.655;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3359,351,0 chrXII 603057 . A T 3114 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0087;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=18.32;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3147,327,0 chrXII 603075 . G T 3068 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.9106;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.67;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3101,324,0 chrXII 603077 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=19.50;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3134,336,0 chrXII 603161 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2948;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.065;QD=23.86;ReadPosRankSum=1.706;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3206,345,0 chrXII 603180 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=24.84;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3552,367,0 chrXII 603216 . A T 2727 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.98;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2760,291,0 chrXII 603219 . G C 2540 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.16;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2573,279,0 chrXII 603313 . C G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.39;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3313,354,0 chrXII 603319 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.08;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3206,357,0 chrXII 603325 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.50;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3311,345,0 chrXII 603365 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=19.2293;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.63;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3232,351,0 chrXII 603486 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8721;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.74;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2967,309,0 chrXII 603566 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.543;QD=21.81;ReadPosRankSum=1.701;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2454,267,0 chrXII 603584 . T A 2501 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.33;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2534,267,0 chrXII 603907 . C A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.34;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4429,460,0 chrXII 604223 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.45;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3512,375,0 chrXII 604825 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.96;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3789,411,0 chrXII 604997 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=13.5890;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=25.30;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3170,330,0 chrXII 605168 . G T 2196 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.78;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2229,237,0 chrXII 605218 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=92.2056;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=18.34;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2179,231,0 chrXII 605223 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=97.9915;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=16.30;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1891,207,0 chrXII 605240 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.814;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;MQRankSum=-1.261;QD=15.46;ReadPosRankSum=1.698;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1625,180,0 chrXII 605250 . A T 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=2.900;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=0.353;QD=15.26;ReadPosRankSum=2.401;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1574,165,0 chrXII 605537 . C A 3019 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.22;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3052,321,0 chrXII 605830 . A G 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.932;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.070;QD=22.50;ReadPosRankSum=1.681;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3093,327,0 chrXII 605962 . G A 5158.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=26.45;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5158,538,0 chrXII 605998 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=185;Dels=0.00;FS=2.940;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.792;QD=23.36;ReadPosRankSum=2.423;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4322,477,0 chrXII 606088 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=211;Dels=0.00;FS=3.200;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.993;QD=22.34;ReadPosRankSum=1.387;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4713,507,0 chrXII 606112 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.310;HaplotypeScore=6.5202;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.933;QD=21.67;ReadPosRankSum=1.697;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4248,462,0 chrXII 606220 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.8494;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.53;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3030,345,0 chrXII 606238 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.7904;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.71;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,175:190:99:3365,357,0 chrXII 606418 . G A 5018.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.63;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5018,526,0 chrXII 607075 . C A 2584 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.71;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2617,282,0 chrXII 607090 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=10.054;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;MQRankSum=-0.030;QD=19.46;ReadPosRankSum=2.410;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2465,258,0 chrXII 607128 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=110.0179;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=17.88;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2375,255,0 chrXII 607134 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=114.3812;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=2;QD=16.18;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2185,234,0 chrXII 607171 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=3;QD=19.74;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2619,279,0 chrXII 607200 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=3;QD=20.62;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2178,234,0 chrXII 607344 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.81;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2633,276,0 chrXII 607531 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.77;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2790,297,0 chrXII 607614 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.97;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2933,303,0 chrXII 607637 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.67;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2992,315,0 chrXII 607680 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.180;QD=20.23;ReadPosRankSum=1.704;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2562,285,0 chrXII 607707 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=20.69;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2268,249,0 chrXII 607722 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=20.49;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2102,222,0 chrXII 607737 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-0.403;QD=18.21;ReadPosRankSum=1.692;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1617,180,0 chrXII 607779 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=18.92;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1641,183,0 chrXII 607790 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=18.56;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1666,180,0 chrXII 607791 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=7.653;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-1.529;QD=17.47;ReadPosRankSum=2.396;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1623,186,0 chrXII 607814 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.45;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2114,231,0 chrXII 607922 . C T 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=95;Dels=0.00;FS=3.603;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.032;QD=19.29;ReadPosRankSum=1.400;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1866,210,0 chrXII 607923 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.617;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-0.979;QD=19.59;ReadPosRankSum=1.506;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1855,210,0 chrXII 607998 . T G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.102;QD=21.25;ReadPosRankSum=1.697;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2158,240,0 chrXII 608022 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.340;QD=23.27;ReadPosRankSum=1.630;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2430,258,0 chrXII 608102 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.59;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3076,324,0 chrXII 608136 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.63;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2694,285,0 chrXII 608154 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.34;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2160,228,0 chrXII 608155 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.78;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2169,228,0 chrXII 608472 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=24.67;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3216,345,0 chrXII 608666 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.56;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2829,306,0 chrXII 608673 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=19.28;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2693,294,0 chrXII 608685 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=18.83;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2500,267,0 chrXII 608709 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-0.872;QD=17.61;ReadPosRankSum=1.656;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2446,261,0 chrXII 608724 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=16.46;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2140,234,0 chrXII 608748 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.12;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2289,240,0 chrXII 609039 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=4.061;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.113;QD=20.87;ReadPosRankSum=1.700;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2287,246,0 chrXII 609087 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.94;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2776,285,0 chrXII 609126 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.79;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2494,258,0 chrXII 609213 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.46;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3088,336,0 chrXII 609308 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.98;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3054,321,0 chrXII 609380 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.66;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4400,460,0 chrXII 609488 . A T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.12;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4045,421,0 chrXII 609555 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.05;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4380,468,0 chrXII 609572 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=3.016;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.344;QD=21.90;ReadPosRankSum=2.400;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4379,460,0 chrXII 609589 . G T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.95;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4368,457,0 chrXII 609688 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4138,438,0 chrXII 609791 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.8339;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.52;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4438,486,0 chrXII 611179 . T C 6634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.028;DP=307;Dels=0.00;FS=19.253;HaplotypeScore=29.6274;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=2.242;QD=21.61;ReadPosRankSum=4.149;SB=-3.773e+03 GT:AD:DP:GQ:PL 1/1:6,301:307:99:6634,738,0 chrXII 611769 . C T 5711.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.8335;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.97;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5711,595,0 chrXII 611779 . A G 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.490;DP=264;Dels=0.00;FS=34.971;HaplotypeScore=7.1014;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-1.898;QD=18.73;ReadPosRankSum=4.400;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:8,254:264:99:4945,543,0 chrXII 611812 . T A 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=249;Dels=0.00;FS=2.568;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.351;QD=17.73;ReadPosRankSum=2.964;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:4414,466,0 chrXII 611853 . C G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.8543;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=14.68;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:4126,447,0 chrXII 611973 . G A 5947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.173;QD=23.69;ReadPosRankSum=0.393;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5947,619,0 chrXII 611994 . A G 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.2963;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=-0.911;QD=22.04;ReadPosRankSum=1.657;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5114,555,0 chrXII 612183 . A G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.329;QD=19.15;ReadPosRankSum=1.702;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2273,249,0 chrXII 612202 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.52;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1848,204,0 chrXII 612238 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.60;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1681,183,0 chrXII 612358 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.31;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2804,303,0 chrXII 612479 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8499;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.46;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3645,379,0 chrXII 612516 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=168;Dels=0.00;FS=2.584;HaplotypeScore=13.6028;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.862;QD=23.43;ReadPosRankSum=2.874;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3936,426,0 chrXII 612558 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=5.3834;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.78;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4115,433,0 chrXII 612562 . T G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.6319;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.138;QD=19.43;ReadPosRankSum=2.924;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3847,417,0 chrXII 612708 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=3.028;HaplotypeScore=5.9643;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.005;QD=19.26;ReadPosRankSum=2.417;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4392,489,0 chrXII 612729 . C T 4911.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.88;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4911,517,0 chrXII 612784 . G T 5281.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.73;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5281,550,0 chrXII 612861 . G A 5709.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.29;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5709,601,0 chrXII 613113 . G T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5194;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.28;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5028,526,0 chrXII 613218 . A G 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2214;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.599;QD=22.12;ReadPosRankSum=1.716;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4712,516,0 chrXII 613368 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.4712;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.86;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4668,493,0 chrXII 613380 . A C 4915.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.74;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:4915,529,0 chrXII 613464 . T C 4845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.489;HaplotypeScore=10.2909;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.235;QD=20.97;ReadPosRankSum=1.702;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:4845,531,0 chrXII 613479 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.89;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4216,442,0 chrXII 613482 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=3.680;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.759;QD=19.09;ReadPosRankSum=1.666;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4009,432,0 chrXII 613527 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=21.3150;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.78;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3733,393,0 chrXII 613846 . G A 2793 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;QD=15.26;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:2826,297,0 chrXII 613848 . C G 2739 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=15.22;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2772,300,0 chrXII 613851 . T C 2708 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=14.72;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2741,291,0 chrXII 613857 . A G 2539 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.034;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;MQRankSum=-0.392;QD=14.03;ReadPosRankSum=1.694;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2572,273,0 chrXII 613864 . C A 2466 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=14.42;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2499,261,0 chrXII 613866 . C T 2364 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=13.82;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2397,249,0 chrXII 613867 . C T 2375 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=13.73;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2408,249,0 chrXII 613890 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.9316;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=15.99;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2960,321,0 chrXII 614136 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.09;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2129,225,0 chrXII 614178 . G C 1174 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.74;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1207,129,0 chrXII 614286 . C A 1070 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.77;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1103,120,0 chrXII 614304 . A G 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=3.031;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.027;QD=20.78;ReadPosRankSum=2.343;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:989,108,0 chrXII 614369 . T C 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.291;QD=24.98;ReadPosRankSum=1.606;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1407,150,0 chrXII 614411 . A T 1497 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.95;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1530,156,0 chrXII 614423 . G T 1545 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.77;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1578,162,0 chrXII 614456 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.05;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1334,138,0 chrXII 614708 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.63;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2767,285,0 chrXII 614740 . A T 2662 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.35;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2695,276,0 chrXII 614751 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.76;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2575,267,0 chrXII 616056 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4036,424,0 chrXII 616887 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.19;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2491,273,0 chrXII 617208 . G T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.04;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4482,472,0 chrXII 617372 . A T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.64;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3735,388,0 chrXII 617706 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.364;QD=24.11;ReadPosRankSum=1.655;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4363,471,0 chrXII 617865 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3170,339,0 chrXII 618108 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3017,310,0 chrXII 618279 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.344;QD=23.95;ReadPosRankSum=1.563;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3425,363,0 chrXII 619023 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=17.5886;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.913;QD=20.08;ReadPosRankSum=1.695;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1941,210,0 chrXII 619341 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=3.412;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.284;QD=21.53;ReadPosRankSum=1.685;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3241,345,0 chrXII 619476 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=168;Dels=0.00;FS=5.685;HaplotypeScore=16.7768;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=2.170;QD=23.80;ReadPosRankSum=2.958;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3999,441,0 chrXII 619650 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.7577;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.496;QD=22.85;ReadPosRankSum=1.712;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3930,417,0 chrXII 619731 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.34;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3998,423,0 chrXII 619752 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.90;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4007,415,0 chrXII 619971 . T G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.340;QD=23.38;ReadPosRankSum=1.667;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3741,420,0 chrXII 620541 . T C 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=234;Dels=0.00;FS=3.021;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.058;QD=23.40;ReadPosRankSum=2.334;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5475,597,0 chrXII 621039 . A C 4970.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.89;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4970,529,0 chrXII 621336 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2827,291,0 chrXII 621513 . T A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.90;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4224,436,0 chrXII 621546 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.27;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4203,439,0 chrXII 621603 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3669,393,0 chrXII 621672 . G T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.17;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4187,433,0 chrXII 621897 . G A 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.358;QD=24.08;ReadPosRankSum=-0.157;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2995,290,0 chrXII 622068 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=6.998;HaplotypeScore=14.0932;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.886;QD=21.82;ReadPosRankSum=2.387;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2608,282,0 chrXII 622344 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.99;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3228,336,0 chrXII 622969 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.660;QD=24.90;ReadPosRankSum=1.660;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1253,132,0 chrXII 622999 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.69;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1613,177,0 chrXII 623059 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.33;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2133,240,0 chrXII 623494 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3021,318,0 chrXII 623830 . C G 5962.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.3100;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.54;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5962,646,0 chrXII 624955 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=4.001;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.689;QD=23.96;ReadPosRankSum=1.631;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2525,273,0 chrXII 625037 . T C 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=6.514;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.618;QD=15.80;ReadPosRankSum=1.703;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:1961,225,0 chrXII 625055 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=104;Dels=0.00;FS=2.333;HaplotypeScore=56.3192;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.452;QD=11.49;ReadPosRankSum=3.371;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:5,99:104:99:1228,135,0 chrXII 625222 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.33;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2490,255,0 chrXII 626422 . T A 329 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=10.97;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:39:362,39,0 chrXII 627007 . T C 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=204;Dels=0.00;FS=8.744;HaplotypeScore=10.5863;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.962;QD=24.14;ReadPosRankSum=2.194;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4925,526,0 chrXII 627201 . G C 4942.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.87;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4942,540,0 chrXII 627274 . T A 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=221;Dels=0.00;FS=7.640;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-2.327;QD=24.21;ReadPosRankSum=2.427;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5351,562,0 chrXII 627361 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.4644;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.70;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3809,405,0 chrXII 627370 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.5407;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.90;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3523,384,0 chrXII 627543 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=3.038;HaplotypeScore=4.6733;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-2.182;QD=23.99;ReadPosRankSum=2.383;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3551,372,0 chrXII 628205 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.393;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.104;QD=20.92;ReadPosRankSum=1.649;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1790,189,0 chrXII 628215 . G T 1855 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.32;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1888,201,0 chrXII 628274 . G C 1830 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.56;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1863,198,0 chrXII 628341 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=16.62;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1329,147,0 chrXII 628361 . A T 1476 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=15.37;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1509,159,0 chrXII 628365 . C A 1588 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.72;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1621,168,0 chrXII 628424 . A G 1921 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.01;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1954,210,0 chrXII 629441 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=154;Dels=0.00;FS=5.035;HaplotypeScore=11.9680;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.826;QD=24.86;ReadPosRankSum=-1.574;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3829,403,0 chrXII 629690 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.465;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.010;QD=24.50;ReadPosRankSum=1.712;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4214,450,0 chrXII 629746 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.07;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3853,417,0 chrXII 629914 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.556;QD=23.33;ReadPosRankSum=1.707;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3253,351,0 chrXII 629974 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2802,303,0 chrXII 630048 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2759,291,0 chrXII 630314 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3538,375,0 chrXII 630870 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.77;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4420,457,0 chrXII 630917 . T C 4802.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.93;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4802,508,0 chrXII 630958 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=187;Dels=0.00;FS=5.993;HaplotypeScore=14.9668;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.902;QD=21.78;ReadPosRankSum=2.951;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:4072,450,0 chrXII 631177 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.00;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4000,421,0 chrXII 632011 . T A 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.283;QD=18.56;ReadPosRankSum=-1.687;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2872,321,0 chrXII 632067 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=7.244;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.256;QD=19.14;ReadPosRankSum=2.367;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:2923,306,0 chrXII 632078 . G C 3052 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.08;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3085,330,0 chrXII 632381 . A C 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5554;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.715;QD=23.02;ReadPosRankSum=1.666;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4812,519,0 chrXII 632671 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2942,303,0 chrXII 632837 . T A 2364 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5799;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.49;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2397,261,0 chrXII 632910 . T C 2590 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.33;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2623,285,0 chrXII 632986 . A G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.102;QD=22.71;ReadPosRankSum=1.701;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2554,282,0 chrXII 633127 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=6.507;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;MQRankSum=-1.671;QD=18.76;ReadPosRankSum=2.368;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2284,252,0 chrXII 633130 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=19.02;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2335,249,0 chrXII 633149 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=15.30;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1854,198,0 chrXII 633163 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=14.77;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1865,201,0 chrXII 633199 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.07;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3123,330,0 chrXII 633302 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=2.693;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.330;QD=21.44;ReadPosRankSum=2.398;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:4138,465,0 chrXII 633316 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.16;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4276,462,0 chrXII 633347 . G T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=18.57;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3713,396,0 chrXII 633355 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=-1.494;QD=16.88;ReadPosRankSum=1.681;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3443,384,0 chrXII 633477 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.5642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.531;QD=19.02;ReadPosRankSum=1.670;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4280,468,0 chrXII 633782 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=23.53;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2763,285,0 chrXII 634219 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.21;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2478,252,0 chrXII 634488 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.69;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3802,397,0 chrXII 634506 . A C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.60;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3571,378,0 chrXII 634590 . A C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.938;QD=22.45;ReadPosRankSum=1.636;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3278,351,0 chrXII 634602 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.18;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3593,370,0 chrXII 634860 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.09;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2417,264,0 chrXII 635025 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2146,234,0 chrXII 635187 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.77;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2719,294,0 chrXII 635220 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.31;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3330,343,0 chrXII 635382 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.61;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2816,306,0 chrXII 635391 . T C 2736 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.54;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2769,294,0 chrXII 635617 . G T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=25.35;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4107,427,0 chrXII 635886 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.615;QD=22.59;ReadPosRankSum=1.131;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4630,472,0 chrXII 636132 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2429,264,0 chrXII 636165 . T A 2644 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.19;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2677,285,0 chrXII 636269 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1984,207,0 chrXII 636684 . A T 1665 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.81;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1698,177,0 chrXII 636690 . T A 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.365;QD=20.86;ReadPosRankSum=1.550;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1618,171,0 chrXII 637193 . C A 7953.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=18.4141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.81;SB=-4.314e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:7953,865,0 chrXII 637236 . A T 7494.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=23.6057;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.73;SB=-3.380e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7494,790,0 chrXII 637467 . T C 7175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=302;Dels=0.00;FS=3.837;HaplotypeScore=19.4982;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.570;QD=23.76;ReadPosRankSum=1.674;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:1,299:302:99:7175,763,0 chrXII 638087 . C T 5971.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.1162;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.69;SB=-3.349e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5971,631,0 chrXII 638303 . C T 5924.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=22.2459;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.54;SB=-3.546e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:5924,628,0 chrXII 638411 . G A 5860.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=18.7599;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5860,634,0 chrXII 640445 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.67;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3466,366,0 chrXII 640496 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.12;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2928,309,0 chrXII 641406 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.059;QD=22.93;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3371,363,0 chrXII 641415 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.29;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3424,363,0 chrXII 641462 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.94;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2725,285,0 chrXII 641481 . A C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=5.675;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.300;QD=19.77;ReadPosRankSum=1.628;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2682,288,0 chrXII 642132 . A G 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.119;QD=23.12;ReadPosRankSum=1.696;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,95:99:99:2322,258,0 chrXII 642188 . T A 3071 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3104,327,0 chrXII 642387 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2632,279,0 chrXII 642476 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.51;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2584,279,0 chrXII 642557 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8953;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.99;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3157,330,0 chrXII 642815 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=193;Dels=0.00;FS=11.085;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.734;QD=23.29;ReadPosRankSum=2.922;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4494,495,0 chrXII 643838 . G A 5506.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.94;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5506,574,0 chrXII 643914 . A G 5445.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.78;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5445,606,0 chrXII 644075 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.42;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4921,543,0 chrXII 644081 . A G 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.822;DP=247;Dels=0.00;FS=11.672;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.864;QD=19.77;ReadPosRankSum=3.765;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:5,241:247:99:4882,523,0 chrXII 644135 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.25;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3850,429,0 chrXII 644264 . T G 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=6.220;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.517;QD=21.37;ReadPosRankSum=1.706;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2939,318,0 chrXII 644551 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=133;Dels=0.00;FS=16.832;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.779;QD=23.68;ReadPosRankSum=2.947;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3182,345,0 chrXII 645338 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.5071;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.530;QD=23.21;ReadPosRankSum=-1.591;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4642,510,0 chrXII 645452 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.64;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4164,436,0 chrXII 646705 . A G 5862.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=21.2659;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5862,631,0 chrXII 646848 . C T 6024.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.9386;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.59;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6024,643,0 chrXII 647017 . C T 5842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=20.7137;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.719;QD=21.24;ReadPosRankSum=0.510;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5842,610,0 chrXII 647095 . A G 5535.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.4550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5535,600,0 chrXII 647371 . T C 5450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=246;Dels=0.00;FS=2.870;HaplotypeScore=15.7696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.436;QD=22.15;ReadPosRankSum=2.389;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:5450,574,0 chrXII 647512 . A G 6366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.036;DP=292;Dels=0.00;FS=14.519;HaplotypeScore=20.8948;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.553;QD=21.80;ReadPosRankSum=4.164;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:6,284:292:99:6366,699,0 chrXII 647722 . C A 5135.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=24.00;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5135,535,0 chrXII 647752 . T C 4294.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.36;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4294,451,0 chrXII 647778 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.05;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:3881,403,0 chrXII 647788 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=230;Dels=0.00;FS=8.141;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.734;QD=16.65;ReadPosRankSum=2.385;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:3830,423,0 chrXII 647854 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=18.5793;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.05;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4438,486,0 chrXII 647936 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6859;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.48;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4047,427,0 chrXII 648649 . C T 5868.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.92;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5868,628,0 chrXII 648877 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=4.025;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.938;QD=24.42;ReadPosRankSum=1.708;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3516,375,0 chrXII 648953 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;DP=143;Dels=0.00;FS=3.027;HaplotypeScore=9.3161;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.601;QD=23.72;ReadPosRankSum=0.874;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3392,342,0 chrXII 649036 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2797,309,0 chrXII 649258 . C T 4612.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=26.06;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4612,487,0 chrXII 649837 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.905;HaplotypeScore=12.9002;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.012;QD=24.43;ReadPosRankSum=1.708;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3567,375,0 chrXII 650212 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4688,525,0 chrXII 650260 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4827,502,0 chrXII 650767 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.53;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1993,204,0 chrXII 656742 . C G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=1.9863;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=2.16;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:6:6:44,6,0 chrXII 656891 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=26.18;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1735,183,0 chrXII 657022 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.58;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1846,201,0 chrXII 657027 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.54;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1713,180,0 chrXII 657041 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.69;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1510,156,0 chrXII 657049 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.96;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1550,162,0 chrXII 657156 . C G 2667 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1175;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.99;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2700,288,0 chrXII 657181 . A C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.055;QD=22.00;ReadPosRankSum=1.696;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2123,228,0 chrXII 657234 . T G 1384 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.06;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1417,153,0 chrXII 657303 . A G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=98;Dels=0.00;FS=20.020;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=0.314;QD=13.77;ReadPosRankSum=3.367;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1382,156,0 chrXII 657321 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=15.45;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1563,162,0 chrXII 657332 . G C 1612 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=15.50;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1645,180,0 chrXII 657492 . C G 2889 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=24.69;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2922,318,0 chrXII 657536 . G T 3013 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.99;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3046,336,0 chrXII 657602 . G A 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7600;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.425;QD=20.60;ReadPosRankSum=0.942;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2381,258,0 chrXII 657631 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=23.98;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2479,258,0 chrXII 657792 . C G 1230 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=14.47;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1263,144,0 chrXII 657805 . T C 1192 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=13.10;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1225,138,0 chrXII 657808 . C T 1171 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=13.62;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1204,126,0 chrXII 657809 . C T 1156 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=13.60;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1189,126,0 chrXII 657814 . C T 1122 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=11.22;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1155,123,0 chrXII 657820 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.25;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1181,129,0 chrXII 657825 . T C 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=103;Dels=0.00;FS=6.149;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.775;QD=11.15;ReadPosRankSum=2.932;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1181,129,0 chrXII 657860 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.94;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1534,159,0 chrXII 657866 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.597;QD=11.92;ReadPosRankSum=1.702;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1416,153,0 chrXII 657899 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=13.57;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1227,132,0 chrXII 657914 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=-1.586;QD=13.43;ReadPosRankSum=1.659;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1309,141,0 chrXII 657918 . A T 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=67.2999;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;MQRankSum=0.764;QD=12.30;ReadPosRankSum=1.695;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1177,132,0 chrXII 658054 . A T 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=4.270;HaplotypeScore=11.3019;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=0.530;QD=25.27;ReadPosRankSum=1.685;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3714,390,0 chrXII 658599 . G T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4287,451,0 chrXII 659222 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.13;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3306,348,0 chrXII 659350 . C T 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.070;QD=21.86;ReadPosRankSum=0.331;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3028,307,0 chrXII 659769 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.64;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2569,270,0 chrXII 659916 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.066;QD=23.31;ReadPosRankSum=1.706;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3087,330,0 chrXII 659919 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.27;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3175,336,0 chrXII 660046 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.147;QD=25.61;ReadPosRankSum=1.685;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3790,399,0 chrXII 660371 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.5293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.05;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3705,402,0 chrXII 660472 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5180;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3462,358,0 chrXII 660622 . A T 2992 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.4239;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.73;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3025,327,0 chrXII 660916 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.7225;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3904,417,0 chrXII 661444 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.26;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3031,336,0 chrXII 661750 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3020,312,0 chrXII 661864 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=176;Dels=0.00;FS=8.810;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.344;QD=22.96;ReadPosRankSum=3.390;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:4041,444,0 chrXII 661927 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.07;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3624,381,0 chrXII 662311 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.47;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3920,417,0 chrXII 662353 . G A 4197.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=19.5269;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.93;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4197,445,0 chrXII 662494 . C G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.89;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4121,444,0 chrXII 662515 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1400;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.92;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4699,496,0 chrXII 662627 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4543,486,0 chrXII 662710 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.57;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4195,436,0 chrXII 662978 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.35;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2357,258,0 chrXII 663017 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.308;QD=24.93;ReadPosRankSum=1.661;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2476,264,0 chrXII 663332 . G A 5245.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5245,550,0 chrXII 663368 . A G 4537.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.21;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4537,495,0 chrXII 663839 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=221;Dels=0.00;FS=8.460;HaplotypeScore=20.5104;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.947;QD=20.93;ReadPosRankSum=2.393;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:4625,493,0 chrXII 663890 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=4.376;HaplotypeScore=17.4236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.146;QD=20.59;ReadPosRankSum=1.640;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3912,417,0 chrXII 664214 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.910;QD=22.50;ReadPosRankSum=2.387;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3577,381,0 chrXII 664385 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=169;Dels=0.00;FS=3.393;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.106;QD=21.25;ReadPosRankSum=1.628;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3591,399,0 chrXII 665046 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0455;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.97;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3558,372,0 chrXII 665751 . C G 5045.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.14;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5045,541,0 chrXII 666395 . T C 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.665;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.663;QD=23.47;ReadPosRankSum=1.628;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4718,508,0 chrXII 666935 . A G 5100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.7332;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.446;QD=22.17;ReadPosRankSum=1.657;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5100,573,0 chrXII 667631 . T A 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=144;Dels=0.00;FS=2.957;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.367;QD=24.06;ReadPosRankSum=2.347;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3464,358,0 chrXII 667877 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.0126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2959,315,0 chrXII 668131 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.19;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2174,231,0 chrXII 668207 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.5888;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.90;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2710,288,0 chrXII 668244 . C T 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.588;QD=25.46;ReadPosRankSum=-1.114;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2910,300,0 chrXII 668550 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.56;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3611,378,0 chrXII 669013 . T C 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.114;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.568;QD=23.28;ReadPosRankSum=1.705;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3036,330,0 chrXII 669053 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.19;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2607,270,0 chrXII 669236 . C A 2414 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.38;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2447,267,0 chrXII 669290 . T A 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.161;QD=19.53;ReadPosRankSum=1.625;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1927,210,0 chrXII 669293 . G C 1929 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.52;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1962,216,0 chrXII 669897 . C A 2720 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.25;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2753,288,0 chrXII 669920 . G T 2851 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.81;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2884,300,0 chrXII 669990 . T A 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.342;QD=21.68;ReadPosRankSum=1.709;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3220,333,0 chrXII 669994 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.29;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3162,336,0 chrXII 670009 . T A 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.998;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.198;QD=20.64;ReadPosRankSum=2.386;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3232,357,0 chrXII 670061 . C G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.28;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3724,411,0 chrXII 670291 . T A 2863 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6970;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.37;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2896,306,0 chrXII 670299 . T G 2625 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.83;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2658,285,0 chrXII 670460 . C G 1922 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.44;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1955,210,0 chrXII 670634 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.24;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2229,240,0 chrXII 670933 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.17;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2349,249,0 chrXII 670999 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.57;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1861,192,0 chrXII 671032 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.28;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1781,195,0 chrXII 671167 . A G 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.311;QD=25.40;ReadPosRankSum=1.688;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2014,216,0 chrXII 671257 . T C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=2.625;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.267;QD=24.31;ReadPosRankSum=2.323;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2391,264,0 chrXII 671310 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.01;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2610,276,0 chrXII 671323 . G C 2480 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1776;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.57;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2513,285,0 chrXII 671463 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=5.924;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.729;QD=20.81;ReadPosRankSum=2.954;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3217,345,0 chrXII 671465 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.59;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3347,349,0 chrXII 671555 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.979;HaplotypeScore=7.1880;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.703;QD=18.78;ReadPosRankSum=1.118;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3287,342,0 chrXII 671563 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=183;Dels=0.00;FS=2.748;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.577;QD=19.17;ReadPosRankSum=2.409;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:3509,375,0 chrXII 671669 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.71;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4149,447,0 chrXII 671703 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=163;Dels=0.00;FS=2.935;HaplotypeScore=16.9147;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.249;QD=22.33;ReadPosRankSum=2.389;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3640,393,0 chrXII 671821 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=178;Dels=0.00;FS=11.939;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.480;QD=23.84;ReadPosRankSum=2.937;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:4243,459,0 chrXII 671956 . A C 2999 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.38;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3032,336,0 chrXII 672242 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=26.33;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4344,451,0 chrXII 672265 . A G 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.320;QD=24.99;ReadPosRankSum=1.670;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4224,453,0 chrXII 672293 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8542;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.342;QD=23.42;ReadPosRankSum=2.409;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4309,465,0 chrXII 672317 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=4.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.956;QD=21.13;ReadPosRankSum=1.712;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3719,417,0 chrXII 672355 . G C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.54;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3307,369,0 chrXII 672394 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3149;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.66;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3061,321,0 chrXII 672505 . G C 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.58;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2472,267,0 chrXII 672556 . T G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=94;Dels=0.00;FS=3.208;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.808;QD=22.64;ReadPosRankSum=1.655;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,89:94:99:2161,234,0 chrXII 672637 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=94;Dels=0.00;FS=7.936;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.533;QD=23.63;ReadPosRankSum=2.397;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2254,246,0 chrXII 672683 . T G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.832;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.060;QD=24.18;ReadPosRankSum=1.692;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2161,234,0 chrXII 672778 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2081,228,0 chrXII 673080 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.190;QD=23.57;ReadPosRankSum=1.702;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2744,291,0 chrXII 673090 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=1.386;QD=23.74;ReadPosRankSum=1.701;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2644,282,0 chrXII 673111 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.880;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=1.128;QD=22.87;ReadPosRankSum=1.926;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2503,247,0 chrXII 673274 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.58;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1580,174,0 chrXII 673337 . G A 55.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.020;DP=93;Dels=0.00;FS=8.474;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;MQRankSum=-0.672;QD=0.60;ReadPosRankSum=2.395;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:4,89:93:9:88,9,0 chrXII 673346 . A G 1262 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=3.017;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;MQRankSum=-0.324;QD=13.28;ReadPosRankSum=2.398;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1295,141,0 chrXII 673354 . C G 1205 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.24;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1238,135,0 chrXII 673355 . T A 1252 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=13.61;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1285,138,0 chrXII 673369 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=72.0050;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=13.19;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1273,135,0 chrXII 673436 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.09;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1379,147,0 chrXII 673533 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=22.13;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1892,198,0 chrXII 673539 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=21.86;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1869,192,0 chrXII 673886 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2971;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.77;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2131,228,0 chrXII 674079 . A C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=7.859;HaplotypeScore=94.9306;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.333;QD=21.89;ReadPosRankSum=2.336;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2397,261,0 chrXII 674152 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.69;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2702,300,0 chrXII 674199 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=3.036;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.451;QD=22.60;ReadPosRankSum=2.414;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3197,348,0 chrXII 674615 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.48;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1809,192,0 chrXII 674647 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.22;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1914,204,0 chrXII 674711 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.49;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2241,249,0 chrXII 674763 . T A 1729 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.34;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1762,192,0 chrXII 674781 . T C 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.075;DP=80;Dels=0.00;FS=2.981;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.451;QD=19.29;ReadPosRankSum=2.325;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1576,174,0 chrXII 674877 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.565;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.316;QD=24.56;ReadPosRankSum=1.697;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2489,261,0 chrXII 674975 . C G 2416 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.70;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2449,264,0 chrXII 675042 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.61;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3396,366,0 chrXII 675394 . T A 2340 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.47;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2373,249,0 chrXII 675407 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1151;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.65;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2588,279,0 chrXII 675924 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.37;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2213,246,0 chrXII 675925 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=103;Dels=0.00;FS=3.047;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.505;QD=20.99;ReadPosRankSum=2.351;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,98:103:99:2195,243,0 chrXII 675961 . C G 2577 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.01;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2610,282,0 chrXII 676076 . G C 3102 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.23;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3135,333,0 chrXII 676609 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.97;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2867,300,0 chrXII 676612 . C G 2835 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.54;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2868,315,0 chrXII 676885 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.92;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4199,442,0 chrXII 676925 . G C 4235.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.66;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4235,451,0 chrXII 676937 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.190;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.951;QD=21.89;ReadPosRankSum=1.672;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3808,417,0 chrXII 677005 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.45;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3570,381,0 chrXII 677132 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.81;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2911,295,0 chrXII 677164 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.8490;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.37;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2829,309,0 chrXII 677323 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=6.143;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.275;QD=25.16;ReadPosRankSum=1.708;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3623,387,0 chrXII 677675 . G A 6668.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.38;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6668,727,0 chrXII 677699 . T G 5880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.842;QD=23.43;ReadPosRankSum=1.718;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5880,645,0 chrXII 677829 . G A 7004.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=14.4944;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.24;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:7004,727,0 chrXII 677900 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.70;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4745,502,0 chrXII 677991 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.30;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4132,444,0 chrXII 678096 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=139;Dels=0.00;FS=3.840;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.552;QD=22.64;ReadPosRankSum=1.707;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3180,345,0 chrXII 678194 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.28;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3083,321,0 chrXII 678427 . G T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6457;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.48;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3378,351,0 chrXII 678531 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.17;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2571,270,0 chrXII 678619 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=25.49;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2990,306,0 chrXII 678645 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.640;QD=24.19;ReadPosRankSum=1.638;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2742,288,0 chrXII 678751 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.69;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2710,288,0 chrXII 678793 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.34;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2509,273,0 chrXII 678817 . T A 2198 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.54;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2231,246,0 chrXII 678955 . A G 2223 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.23;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2256,252,0 chrXII 679180 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.10;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3166,333,0 chrXII 679403 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.505;QD=23.97;ReadPosRankSum=1.708;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3451,369,0 chrXII 679496 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=155;Dels=0.00;FS=6.397;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.263;QD=22.79;ReadPosRankSum=2.322;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3533,393,0 chrXII 679600 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.89;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3892,423,0 chrXII 679807 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.51;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2937,306,0 chrXII 680005 . A C 1850 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.03;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1883,204,0 chrXII 680159 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.96;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3253,339,0 chrXII 680346 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=189;Dels=0.00;FS=6.060;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.569;QD=21.72;ReadPosRankSum=2.888;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4105,444,0 chrXII 680364 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.14;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4207,439,0 chrXII 680926 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.11;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3698,388,0 chrXII 680974 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.453;QD=20.95;ReadPosRankSum=1.712;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3709,408,0 chrXII 681097 . T C 2996 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.02;FS=0.000;HaplotypeScore=31.3519;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.95;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3029,333,0 chrXII 681563 . A G 3177 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1711;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3210,342,0 chrXII 681614 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.29;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3982,421,0 chrXII 681851 . A G 4603.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.75;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4603,504,0 chrXII 682248 . A C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=103;Dels=0.00;FS=5.349;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.149;QD=22.18;ReadPosRankSum=2.931;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:3,99:103:99:2318,252,0 chrXII 682830 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1252;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.43;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4077,424,0 chrXII 682839 . C A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.23;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4089,421,0 chrXII 682874 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.99;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3629,390,0 chrXII 683405 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3143,351,0 chrXII 683462 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1688,177,0 chrXII 683798 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.05;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2061,219,0 chrXII 683858 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.86;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3406,372,0 chrXII 684068 . T G 5736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=222;Dels=0.00;FS=2.820;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.228;QD=25.84;ReadPosRankSum=2.405;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5736,613,0 chrXII 684167 . T C 5083.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5083,555,0 chrXII 684641 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.585;QD=21.87;ReadPosRankSum=1.708;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3204,348,0 chrXII 684650 . T A 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=2.839;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-1.337;QD=23.01;ReadPosRankSum=2.416;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3406,349,0 chrXII 684653 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.905;QD=20.08;ReadPosRankSum=1.687;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3146,339,0 chrXII 684785 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.46;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4252,448,0 chrXII 685228 . A T 2853 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.95;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2886,303,0 chrXII 685293 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.449;QD=23.93;ReadPosRankSum=1.681;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3264,348,0 chrXII 685721 . A T 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=155;Dels=0.01;FS=15.778;HaplotypeScore=42.0075;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.721;QD=21.66;ReadPosRankSum=3.323;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3358,354,0 chrXII 685853 . T C 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.718;QD=23.13;ReadPosRankSum=2.333;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3886,411,0 chrXII 685892 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.02;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4903,505,0 chrXII 686000 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.6300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.20;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4259,445,0 chrXII 686213 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.71;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4176,436,0 chrXII 686636 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.39;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3055,321,0 chrXII 686723 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.92;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2949,312,0 chrXII 686785 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2086;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.50;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3285,337,0 chrXII 686789 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=8.2086;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.24;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2988,330,0 chrXII 687405 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.43;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1490,159,0 chrXII 687563 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=5.3281;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=1.62;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:49,6,0 chrXII 687646 . G A 605 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.17;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:69:638,69,0 chrXII 687662 . T C 848 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:96:881,96,0 chrXII 687735 . T A 1105 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;MQRankSum=-0.301;QD=24.02;ReadPosRankSum=1.582;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1138,123,0 chrXII 687769 . G T 1070 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=24.88;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1103,123,0 chrXII 687807 . A T 934 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=23.95;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:967,108,0 chrXII 687816 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=25.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1005,108,0 chrXII 687963 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,43:43:6:56,6,0 chrXII 687973 . A C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=27.7600;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;MQRankSum=-1.139;QD=0.68;ReadPosRankSum=1.238;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,34:35:6:55,6,0 chrXII 688077 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=25.36;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1377,150,0 chrXII 688146 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.565;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=-0.485;QD=21.45;ReadPosRankSum=1.640;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1642,183,0 chrXII 688227 . C A 1394 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=21.12;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1427,156,0 chrXII 688237 . T G 1250 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=18.94;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1283,138,0 chrXII 688246 . C A 1043 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=18.62;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1076,117,0 chrXII 688263 . T A 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;MQRankSum=-0.478;QD=16.31;ReadPosRankSum=1.613;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:995,111,0 chrXII 688265 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=15.55;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:966,108,0 chrXII 688326 . T C 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=2.709;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.600;QD=20.95;ReadPosRankSum=2.393;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1877,201,0 chrXII 688347 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.48;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2160,231,0 chrXII 688417 . C T 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=0.396;QD=21.73;ReadPosRankSum=-0.940;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1576,157,0 chrXII 688424 . C G 1368 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.54;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1401,156,0 chrXII 688445 . C G 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=19.65;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1507,165,0 chrXII 688464 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=21.36;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1827,195,0 chrXII 688522 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.91;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2061,225,0 chrXII 688604 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.753;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.081;QD=20.65;ReadPosRankSum=2.380;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2222,237,0 chrXII 688606 . T A 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.65;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2328,240,0 chrXII 688733 . T C 2305 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.76;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2338,255,0 chrXII 688772 . T C 2472 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.32;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2505,273,0 chrXII 688789 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.25;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2335,243,0 chrXII 688902 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.31;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1327,144,0 chrXII 689122 . G T 1078 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=24.50;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1111,117,0 chrXII 689147 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=25.60;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1236,126,0 chrXII 689216 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7023;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.03;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2286,234,0 chrXII 689323 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=4.801;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.241;QD=24.64;ReadPosRankSum=1.709;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3671,387,0 chrXII 689355 . T G 2379 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.89;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2412,264,0 chrXII 689357 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.74;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2507,264,0 chrXII 689502 . G C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.40;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3366,360,0 chrXII 689510 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.32;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2982,324,0 chrXII 689527 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.18;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2929,318,0 chrXII 689587 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=4.078;HaplotypeScore=12.7687;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.820;QD=20.56;ReadPosRankSum=1.706;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2788,309,0 chrXII 689626 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.481;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.538;QD=23.06;ReadPosRankSum=1.700;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2524,279,0 chrXII 689719 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=24.90;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2473,255,0 chrXII 689793 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.42;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1687,183,0 chrXII 689859 . A T 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.856;QD=19.16;ReadPosRankSum=1.690;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1623,174,0 chrXII 689916 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1635,177,0 chrXII 689955 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2240,231,0 chrXII 690162 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2039,228,0 chrXII 690280 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.957;QD=22.07;ReadPosRankSum=1.681;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1512,162,0 chrXII 690475 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.45;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3019,324,0 chrXII 690479 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.43;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2908,312,0 chrXII 690497 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.72;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2935,321,0 chrXII 690579 . G T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4915,531,0 chrXII 690766 . C T 4809.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.69;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4809,516,0 chrXII 691332 . A T 2525 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1559;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2558,276,0 chrXII 691605 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.505;QD=24.67;ReadPosRankSum=1.704;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3043,327,0 chrXII 691647 . T C 2838 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.85;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2871,309,0 chrXII 691716 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6595;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.09;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3831,397,0 chrXII 691842 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.444;QD=22.20;ReadPosRankSum=2.408;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2675,285,0 chrXII 691866 . A G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.536;QD=23.12;ReadPosRankSum=1.701;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2646,285,0 chrXII 692160 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.46;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3059,327,0 chrXII 692181 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.88;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3341,354,0 chrXII 692874 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.425;QD=22.31;ReadPosRankSum=1.710;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3569,393,0 chrXII 693267 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4204,442,0 chrXII 693579 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=162;Dels=0.00;FS=5.940;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.454;QD=24.48;ReadPosRankSum=2.932;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3966,418,0 chrXII 693615 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3723,405,0 chrXII 693687 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3942,409,0 chrXII 693756 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2927,312,0 chrXII 693786 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=24.58;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2516,267,0 chrXII 693904 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1940,204,0 chrXII 694170 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4061;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.91;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3391,351,0 chrXII 694211 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.65;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2991,306,0 chrXII 694318 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.01;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3451,352,0 chrXII 694377 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.28;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2850,312,0 chrXII 694457 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.43;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3306,351,0 chrXII 694826 . A T 1346 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.81;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1379,150,0 chrXII 694841 . T C 1108 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.73;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1141,120,0 chrXII 694915 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1468,153,0 chrXII 694939 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.62;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1390,153,0 chrXII 694951 . A G 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.733;QD=23.31;ReadPosRankSum=1.666;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1245,135,0 chrXII 694982 . C T 678 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.94;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,32:34:75:711,75,0 chrXII 696350 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2235,237,0 chrXII 696795 . A G 3021 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.17;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3054,330,0 chrXII 696862 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2517,264,0 chrXII 696990 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=11.0184;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=21.58;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2320,249,0 chrXII 697198 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.26;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2610,267,0 chrXII 697261 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.00;FS=6.940;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.059;QD=24.03;ReadPosRankSum=2.407;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,113:118:99:2869,321,0 chrXII 697759 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.96;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2339,246,0 chrXII 698944 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.9001;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.44;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3867,403,0 chrXII 699067 . C T 4965.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.1961;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.87;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4965,546,0 chrXII 699181 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3938,420,0 chrXII 699566 . A G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.532;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.261;QD=23.61;ReadPosRankSum=1.634;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2583,276,0 chrXII 699870 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.23;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:903,99,0 chrXII 699895 . C T 787 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=31.2519;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.18;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:90:820,90,0 chrXII 700111 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3177,348,0 chrXII 700524 . C A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.20;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4815,496,0 chrXII 700890 . T A 5863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=241;Dels=0.00;FS=3.101;HaplotypeScore=19.3340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.050;QD=24.33;ReadPosRankSum=1.718;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5863,610,0 chrXII 701265 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1403,150,0 chrXII 701540 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.05;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3733,382,0 chrXII 701665 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.98;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3385,372,0 chrXII 701793 . A T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.5261;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.42;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3841,405,0 chrXII 702075 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.37;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2814,303,0 chrXII 702204 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.33;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:88:99:1910,204,0 chrXII 702363 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.20;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2217,243,0 chrXII 702384 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=2.596;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.076;QD=20.97;ReadPosRankSum=2.915;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2256,243,0 chrXII 702585 . C G 4570.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.53;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4570,487,0 chrXII 702788 . G A 6198.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.9970;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.93;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6198,670,0 chrXII 702990 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=179;Dels=0.00;FS=6.520;HaplotypeScore=12.7332;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.208;QD=18.36;ReadPosRankSum=1.712;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3286,375,0 chrXII 703356 . C A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.38;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3952,415,0 chrXII 703572 . G A 4827.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.0492;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.21;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4827,531,0 chrXII 703611 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=5.002;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.422;QD=22.97;ReadPosRankSum=1.714;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4433,495,0 chrXII 703659 . G A 5123.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.3342;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.50;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5123,561,0 chrXII 703815 . C T 5290.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.8109;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.41;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5290,556,0 chrXII 703971 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=183;Dels=0.00;FS=7.014;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.373;QD=21.14;ReadPosRankSum=2.395;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:3868,414,0 chrXII 704386 . C G 1978 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.31;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2011,219,0 chrXII 704793 . A G 5836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=262;Dels=0.00;FS=2.990;HaplotypeScore=19.4183;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.552;QD=22.27;ReadPosRankSum=2.431;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5836,630,0 chrXII 704829 . G A 5619.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.32;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5619,586,0 chrXII 704992 . T G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=4.070;HaplotypeScore=19.4667;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.411;QD=21.41;ReadPosRankSum=1.714;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4218,456,0 chrXII 705029 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7376;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.46;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4480,472,0 chrXII 705093 . C T 5187.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=22.26;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5187,555,0 chrXII 705096 . A T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.79;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5377,547,0 chrXII 705118 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=213;Dels=0.00;FS=2.950;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.608;QD=20.24;ReadPosRankSum=2.426;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4312,462,0 chrXII 705128 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.804;DP=204;Dels=0.00;FS=18.329;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.581;QD=17.72;ReadPosRankSum=3.811;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:5,197:204:99:3614,390,0 chrXII 705191 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.35;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3630,390,0 chrXII 705209 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.79;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3659,399,0 chrXII 705221 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.56;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4075,418,0 chrXII 705602 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.14;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3293,342,0 chrXII 705704 . A G 2940 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=26.25;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2973,312,0 chrXII 705727 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=113;Dels=0.00;FS=2.990;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.055;QD=23.31;ReadPosRankSum=2.317;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2667,294,0 chrXII 705749 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.83;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2774,291,0 chrXII 706112 . T C 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.997;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.295;QD=23.76;ReadPosRankSum=2.302;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4371,468,0 chrXII 706444 . A G 5456.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.9461;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.80;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5456,591,0 chrXII 706747 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0187;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=20.78;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3304,348,0 chrXII 706756 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1674;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=18.13;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2843,315,0 chrXII 706780 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=-0.272;QD=17.31;ReadPosRankSum=1.559;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2456,267,0 chrXII 706789 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.616;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.508;QD=17.30;ReadPosRankSum=2.414;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2421,264,0 chrXII 706807 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4951;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.86;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2498,261,0 chrXII 706906 . T C 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.372;QD=21.20;ReadPosRankSum=2.409;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2598,282,0 chrXII 706966 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.61;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2432,267,0 chrXII 706978 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=3.629;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-0.536;QD=21.88;ReadPosRankSum=1.701;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2549,276,0 chrXII 707020 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.79;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2343,252,0 chrXII 707098 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.014;QD=21.64;ReadPosRankSum=1.681;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2955,315,0 chrXII 707238 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.68;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2982,309,0 chrXII 707302 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.97;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3581,384,0 chrXII 707305 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.506;QD=22.53;ReadPosRankSum=1.711;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3627,387,0 chrXII 707318 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.03;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3407,366,0 chrXII 707644 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3530,381,0 chrXII 707757 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.613;QD=17.33;ReadPosRankSum=1.626;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2286,276,0 chrXII 707758 . T A 2266 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.43;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2299,276,0 chrXII 707772 . G C 2906 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.90;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2939,315,0 chrXII 707950 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1323;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=26.14;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4078,427,0 chrXII 708185 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.52;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3049,333,0 chrXII 708261 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.45;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2525,270,0 chrXII 708276 . T G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.707;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.064;QD=22.48;ReadPosRankSum=1.700;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2483,267,0 chrXII 708383 . A T 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.040;QD=24.74;ReadPosRankSum=0.846;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2161,228,0 chrXII 708425 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.16;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2534,270,0 chrXII 708595 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=23.73;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4509,475,0 chrXII 708755 . G T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.47;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4134,436,0 chrXII 708796 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.61;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4466,469,0 chrXII 708814 . A T 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=236;Dels=0.00;FS=3.006;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.112;QD=19.82;ReadPosRankSum=2.397;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:4677,493,0 chrXII 708837 . T G 4730.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=18.77;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:4730,505,0 chrXII 708840 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=19.00;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4732,493,0 chrXII 708955 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.6044;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=24.28;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4297,456,0 chrXII 709063 . A T 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.069;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.960;QD=21.09;ReadPosRankSum=1.709;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3154,330,0 chrXII 709102 . T A 3109 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.7954;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=20.45;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3142,325,0 chrXII 709175 . G C 2886 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=18.99;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2919,312,0 chrXII 709384 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=6.749;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.174;QD=24.22;ReadPosRankSum=2.418;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3778,423,0 chrXII 709879 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.51;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4344,477,0 chrXII 709888 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.59;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4314,465,0 chrXII 710056 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2100;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=19.76;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2661,297,0 chrXII 710068 . C A 2725 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=21.29;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2758,285,0 chrXII 710090 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.07;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2016,225,0 chrXII 710116 . A G 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-1.032;QD=19.36;ReadPosRankSum=1.693;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1756,192,0 chrXII 710157 . A G 831 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.79;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:864,93,0 chrXII 710161 . A G 878 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.92;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:911,99,0 chrXII 710167 . G A 878 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.68;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:911,96,0 chrXII 710215 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.83;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1345,144,0 chrXII 710283 . T G 1584 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.29;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1617,174,0 chrXII 710358 . T G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.106;QD=25.50;ReadPosRankSum=1.661;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2532,267,0 chrXII 710493 . A T 2773 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.3093;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.92;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2806,297,0 chrXII 710635 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0115;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.01;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3209,339,0 chrXII 710704 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.4869;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.12;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3212,333,0 chrXII 710709 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.04;FS=0.000;HaplotypeScore=16.7296;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.99;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2888,306,0 chrXII 710871 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=7.2896;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=21.45;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3014,312,0 chrXII 710894 . C G 2707 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.06;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2740,297,0 chrXII 711045 . T G 2978 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=22.73;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3011,327,0 chrXII 711058 . T C 2900 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=23.02;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2933,318,0 chrXII 711067 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=22.26;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2905,306,0 chrXII 711312 . C T 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.087;QD=23.06;ReadPosRankSum=0.866;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2800,294,0 chrXII 711337 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=127;Dels=0.00;FS=3.046;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.253;QD=20.75;ReadPosRankSum=1.704;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,122:127:99:2668,297,0 chrXII 711354 . G T 2831 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.82;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2864,315,0 chrXII 711432 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3041,315,0 chrXII 711837 . T G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.719;QD=24.88;ReadPosRankSum=1.709;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3682,399,0 chrXII 712040 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2607,282,0 chrXII 712134 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.481;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.182;QD=23.26;ReadPosRankSum=1.667;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2545,273,0 chrXII 712302 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.33;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2393,258,0 chrXII 712581 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1739,177,0 chrXII 712739 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=60;Dels=0.00;FS=3.002;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.277;QD=20.18;ReadPosRankSum=2.365;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,56:60:99:1244,135,0 chrXII 712942 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=20.14;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1584,171,0 chrXII 712958 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=20.77;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1591,162,0 chrXII 712973 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=17.28;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1312,138,0 chrXII 712990 . A C 730 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=12.81;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:763,87,0 chrXII 713059 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=14.54;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1618,165,0 chrXII 713068 . T A 1560 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=14.05;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1593,168,0 chrXII 713180 . G T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=26.85;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3383,354,0 chrXII 713310 . T A 157.76 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.795;DP=128;Dels=0.00;FS=17.464;HaplotypeScore=100.7173;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;MQRankSum=1.432;QD=1.23;ReadPosRankSum=-5.111;SB=1.24 GT:AD:DP:GQ:PL 1/1:111,17:128:6:189,6,0 chrXII 713365 . T G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=153.4865;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.820;QD=15.35;ReadPosRankSum=2.658;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:2459,273,0 chrXII 713479 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.042;QD=20.95;ReadPosRankSum=1.711;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3478,372,0 chrXII 713507 . A G 2965 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=4.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=-0.745;QD=15.94;ReadPosRankSum=1.695;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:2998,321,0 chrXII 713513 . G A 2633 SnpCluster AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=13.71;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2666,297,0 chrXII 713516 . T C 2735 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=13.67;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2768,306,0 chrXII 713543 . A C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=13.98;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:3454,378,0 chrXII 713644 . A G 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=224;Dels=0.00;FS=3.029;HaplotypeScore=18.3860;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.836;QD=22.61;ReadPosRankSum=2.384;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5064,541,0 chrXII 713693 . G C 4841.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.33;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4841,540,0 chrXII 713754 . C G 5378.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.1122;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.90;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,218:225:99:5378,568,0 chrXII 713843 . T C 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=210;Dels=0.00;FS=6.782;HaplotypeScore=16.1069;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.170;QD=22.76;ReadPosRankSum=2.379;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4779,513,0 chrXII 714002 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.1443;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.24;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4331,454,0 chrXII 714020 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.95;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4329,454,0 chrXII 714062 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=224;Dels=0.00;FS=3.960;HaplotypeScore=14.4397;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.665;QD=20.52;ReadPosRankSum=1.717;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4597,501,0 chrXII 714134 . A G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=228;Dels=0.00;FS=7.631;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.125;QD=22.66;ReadPosRankSum=2.396;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5167,558,0 chrXII 714158 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=225;Dels=0.00;FS=3.483;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.878;QD=21.88;ReadPosRankSum=1.685;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4924,546,0 chrXII 714185 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.3391;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.47;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4508,472,0 chrXII 714200 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.04;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:3885,432,0 chrXII 714302 . G A 5619.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.12;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5619,612,0 chrXII 714320 . G T 5349.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.16;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5349,582,0 chrXII 714407 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.571;QD=21.61;ReadPosRankSum=1.692;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3739,411,0 chrXII 714439 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.22;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4089,430,0 chrXII 714546 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3728,393,0 chrXII 714587 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.49;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4063,424,0 chrXII 714641 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.99;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4139,453,0 chrXII 714966 . G C 3091 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.15;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3124,330,0 chrXII 714987 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.626;DP=148;Dels=0.00;FS=19.752;HaplotypeScore=7.7086;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.055;QD=22.83;ReadPosRankSum=3.529;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:5,142:148:99:3379,360,0 chrXII 715068 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.46;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,237,0 chrXII 715073 . C A 1889 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0675;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.65;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1922,207,0 chrXII 715235 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.0237;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2430,255,0 chrXII 715595 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.16;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3524,381,0 chrXII 715622 . A C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.472;QD=23.07;ReadPosRankSum=1.710;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3576,387,0 chrXII 715772 . G T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.29;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3819,400,0 chrXII 715867 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.74;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4059,432,0 chrXII 715886 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.72;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3795,397,0 chrXII 715955 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.95;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3343,348,0 chrXII 715982 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.32;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3551,372,0 chrXII 716177 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.241;QD=23.29;ReadPosRankSum=1.204;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3540,364,0 chrXII 716369 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.35;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4056,418,0 chrXII 716399 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.45;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3447,360,0 chrXII 716594 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.585;QD=22.20;ReadPosRankSum=1.710;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3574,390,0 chrXII 716777 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3207,351,0 chrXII 716852 . A C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=2.912;HaplotypeScore=11.0074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.042;QD=22.24;ReadPosRankSum=2.382;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3258,360,0 chrXII 717136 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.90;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:69:660,69,0 chrXII 717181 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.085;QD=24.90;ReadPosRankSum=1.675;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1552,168,0 chrXII 717475 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.69;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2094,219,0 chrXII 717529 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.32;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2202,231,0 chrXII 717634 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.187;QD=24.26;ReadPosRankSum=2.400;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2435,261,0 chrXII 717712 . A G 2379 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=25.31;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2412,261,0 chrXII 717736 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=7.0551;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.554;QD=24.42;ReadPosRankSum=1.282;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2475,261,0 chrXII 717897 . G T 2311 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=23.11;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2344,246,0 chrXII 717949 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.88;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1902,201,0 chrXII 717952 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.72;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1966,204,0 chrXII 718104 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=15.1025;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=15.23;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:505,54,0 chrXII 718154 . A G 366 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=10.17;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:399,45,0 chrXII 718211 . G A 278 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.53;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:33:311,33,0 chrXII 718257 . A T 216.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=18.00;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:249,27,0 chrXII 718266 . A G 333 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.59;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:366,39,0 chrXII 718278 . T A 435 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=19.77;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:468,51,0 chrXII 718479 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=112;Dels=0.00;FS=2.598;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.847;QD=21.16;ReadPosRankSum=2.865;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2403,258,0 chrXII 718515 . A G 2323 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.58;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2356,264,0 chrXII 718521 . T C 2231 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.29;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2264,240,0 chrXII 718593 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.79;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2800,288,0 chrXII 718821 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.99;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2892,315,0 chrXII 718896 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.97;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2973,321,0 chrXII 719036 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.24;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2885,315,0 chrXII 719106 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2996,315,0 chrXII 719400 . G A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.8080;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.29;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4845,519,0 chrXII 719436 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=3.748;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.624;QD=23.35;ReadPosRankSum=1.696;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4553,492,0 chrXII 719509 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.99;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3931,420,0 chrXII 719618 . A G 2221 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.83;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2254,249,0 chrXII 719858 . T G 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.40;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2810,309,0 chrXII 719910 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.36;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2836,300,0 chrXII 720526 . T A 1954 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.14;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1987,207,0 chrXII 720539 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.08;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1930,201,0 chrXII 721257 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4148,433,0 chrXII 721788 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.77;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2006,210,0 chrXII 721983 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.35;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2536,267,0 chrXII 721984 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.34;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2535,267,0 chrXII 722023 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0345;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.66;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3001,336,0 chrXII 722079 . A T 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=190;Dels=0.00;FS=3.392;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.182;QD=22.96;ReadPosRankSum=1.659;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4362,445,0 chrXII 722344 . C G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.39;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3649,384,0 chrXII 722380 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.563;QD=23.32;ReadPosRankSum=1.684;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3335,363,0 chrXII 722447 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.70;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2969,318,0 chrXII 722471 . T A 2306 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5922;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=15.17;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2339,249,0 chrXII 722507 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4662;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=14.67;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1882,198,0 chrXII 722593 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.7173;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=23.97;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3764,402,0 chrXII 722617 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.92;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3278,363,0 chrXII 722645 . C A 2696 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.97;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2729,303,0 chrXII 722657 . G T 2303 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=18.28;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2336,258,0 chrXII 722745 . C G 2832 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.30;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2865,312,0 chrXII 722850 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5407;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=14.08;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1864,198,0 chrXII 723182 . A T 142.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=124;Dels=0.00;FS=12.262;HaplotypeScore=107.5513;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-1.480;QD=1.15;ReadPosRankSum=0.325;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:24:175,24,0 chrXII 723252 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=18.2978;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.83;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2311,243,0 chrXII 723283 . G C 2817 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=17.61;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2850,303,0 chrXII 723290 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=17.33;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2910,312,0 chrXII 723319 . T G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=1.712;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2423,261,0 chrXII 723329 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=11.73;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:1839,201,0 chrXII 723330 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=4.022;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;MQRankSum=-1.642;QD=12.05;ReadPosRankSum=1.710;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1889,204,0 chrXII 723342 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=13.18;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2207,234,0 chrXII 723355 . T C 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=173;Dels=0.00;FS=2.574;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-2.680;QD=14.13;ReadPosRankSum=2.960;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:2478,270,0 chrXII 723463 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.37;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4087,438,0 chrXII 723739 . T C 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.199;QD=24.08;ReadPosRankSum=1.679;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1598,168,0 chrXII 723998 . C A 1731 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1764,195,0 chrXII 724534 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.99;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1460,159,0 chrXII 724603 . T G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=59;Dels=0.00;FS=4.771;HaplotypeScore=42.4377;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.577;QD=20.08;ReadPosRankSum=-0.213;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,56:59:99:1218,132,0 chrXII 724607 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=45.2481;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.27;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1166,126,0 chrXII 724833 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.54;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1579,168,0 chrXII 724901 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4370;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.52;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2142,225,0 chrXII 725538 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=13.77;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2057,213,0 chrXII 725542 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.901;QD=14.03;ReadPosRankSum=2.861;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:3,149:152:99:2165,228,0 chrXII 725578 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=15.980;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.259;QD=16.34;ReadPosRankSum=2.327;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2663,297,0 chrXII 725584 . G C 2802 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.78;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2835,309,0 chrXII 725693 . A T 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.063;QD=23.00;ReadPosRankSum=1.690;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1942,204,0 chrXII 725711 . C A 1608 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.03;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1641,177,0 chrXII 725936 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.57;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2744,285,0 chrXII 726025 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.075;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.126;QD=25.13;ReadPosRankSum=1.682;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3493,387,0 chrXII 726161 . C G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0007;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.39;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3762,420,0 chrXII 726449 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.56;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3586,390,0 chrXII 726580 . A G 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=132;Dels=0.00;FS=13.513;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.839;QD=23.18;ReadPosRankSum=3.364;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:4,127:132:99:3093,339,0 chrXII 726848 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.342;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.713;QD=23.42;ReadPosRankSum=1.713;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4145,459,0 chrXII 727094 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.5489;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.35;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4358,471,0 chrXII 727106 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=189;Dels=0.00;FS=3.013;HaplotypeScore=8.1277;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.217;QD=21.33;ReadPosRankSum=2.397;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4032,438,0 chrXII 727328 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5019;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.365;QD=23.22;ReadPosRankSum=1.709;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3576,390,0 chrXII 727454 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2430,258,0 chrXII 727539 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7956;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.91;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3262,351,0 chrXII 727901 . T C 5753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=3.235;HaplotypeScore=13.1588;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.674;QD=24.07;ReadPosRankSum=1.718;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5753,616,0 chrXII 728027 . A G 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.103;QD=23.83;ReadPosRankSum=2.365;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4862,522,0 chrXII 728082 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7601;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.813;QD=23.06;ReadPosRankSum=-1.331;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3459,344,0 chrXII 728635 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3831,411,0 chrXII 728727 . C G 2561 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2594,276,0 chrXII 729242 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=3.554;HaplotypeScore=9.7815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.798;QD=22.45;ReadPosRankSum=1.698;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4580,487,0 chrXII 729938 . C T 6125.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.6008;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.74;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6125,649,0 chrXII 729962 . T C 5632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=7.6708;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.383;QD=21.01;ReadPosRankSum=1.667;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,266:268:99:5632,615,0 chrXII 730685 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2229,228,0 chrXII 730719 . C A 2595 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.95;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2628,270,0 chrXII 730778 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.20;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3557,367,0 chrXII 731012 . C T 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.167;QD=25.18;ReadPosRankSum=0.849;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5237,524,0 chrXII 731668 . T A 650 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=18.57;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:683,81,0 chrXII 731669 . G A 653 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=19.79;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:686,81,0 chrXII 731671 . A T 621 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=20.03;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:654,78,0 chrXII 731677 . G C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=0.736;QD=6.66;ReadPosRankSum=0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:72,9,0 chrXII 732435 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3721,388,0 chrXII 733837 . G A 4222.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.46;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4222,439,0 chrXII 734157 . A T 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.945;QD=23.95;ReadPosRankSum=1.665;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3689,402,0 chrXII 734456 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.21;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2377,252,0 chrXII 736154 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.8114;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5097,535,0 chrXII 736352 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=215;Dels=0.00;FS=9.149;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.278;QD=23.13;ReadPosRankSum=3.339;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:4972,555,0 chrXII 736586 . G A 5606.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.4974;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.16;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5606,583,0 chrXII 736739 . G A 5165.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.07;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5165,535,0 chrXII 736757 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.0624;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.63;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5322,562,0 chrXII 737369 . G T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4363;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.32;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4888,511,0 chrXII 737570 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.86;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2395,249,0 chrXII 737776 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.88;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2571,264,0 chrXII 737804 . T A 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.396;QD=21.30;ReadPosRankSum=2.386;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2482,261,0 chrXII 738097 . G C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.25;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3864,411,0 chrXII 738125 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.16;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3648,393,0 chrXII 738353 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.821;HaplotypeScore=10.2100;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.055;QD=22.91;ReadPosRankSum=1.695;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4308,465,0 chrXII 738992 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.3250;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.42;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3878,409,0 chrXII 739051 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.63;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3852,408,0 chrXII 739067 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.210;QD=21.48;ReadPosRankSum=1.649;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3587,393,0 chrXII 739184 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3604,393,0 chrXII 739411 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=171;Dels=0.00;FS=8.951;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.545;QD=23.58;ReadPosRankSum=3.303;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:4,164:171:99:4033,432,0 chrXII 739624 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=3.034;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.836;QD=23.10;ReadPosRankSum=2.287;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3835,400,0 chrXII 739958 . G A 5395.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.86;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5395,556,0 chrXII 740405 . G A 4974.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5272;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.51;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4974,520,0 chrXII 740813 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.21;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2702,288,0 chrXII 741116 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.35;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3574,373,0 chrXII 741197 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.374;QD=23.28;ReadPosRankSum=1.710;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3631,396,0 chrXII 741422 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.95;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4454,469,0 chrXII 741983 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.62;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3459,366,0 chrXII 742073 . T G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.391;QD=22.21;ReadPosRankSum=1.576;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3487,378,0 chrXII 742088 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.99;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3288,351,0 chrXII 742174 . C T 4544.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.97;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4544,475,0 chrXII 742199 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=211;Dels=0.00;FS=9.669;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.147;QD=19.55;ReadPosRankSum=2.379;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4124,450,0 chrXII 742202 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.109;QD=19.79;ReadPosRankSum=2.381;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4254,453,0 chrXII 742352 . G A 5062.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.96;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5062,520,0 chrXII 742787 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=4.383;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.340;QD=24.20;ReadPosRankSum=1.700;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2622,279,0 chrXII 742844 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.17;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2626,273,0 chrXII 742979 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=25.84;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2953,318,0 chrXII 743013 . T A 3172 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.78;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3205,348,0 chrXII 743135 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=117;Dels=0.00;FS=6.110;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.388;QD=24.12;ReadPosRankSum=2.871;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2855,300,0 chrXII 743183 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=21.29;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2652,273,0 chrXII 743189 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.50;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2575,267,0 chrXII 743204 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.54;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2313,258,0 chrXII 743763 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.42;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3272,342,0 chrXII 743917 . A T 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.547;QD=21.09;ReadPosRankSum=1.641;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2437,252,0 chrXII 744124 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2228,243,0 chrXII 744207 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.34;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3201,336,0 chrXII 744416 . A G 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.055;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.520;QD=21.72;ReadPosRankSum=2.324;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2162,240,0 chrXII 744446 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=4.049;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.590;QD=19.79;ReadPosRankSum=1.658;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1913,210,0 chrXII 744566 . A T 2441 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.93;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2474,255,0 chrXII 744885 . T A 1248 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1281,138,0 chrXII 744923 . C A 1477 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1510,156,0 chrXII 745460 . A G 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=6.652;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.484;QD=22.27;ReadPosRankSum=2.325;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1815,198,0 chrXII 745464 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.40;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1892,198,0 chrXII 745552 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.72;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2873,303,0 chrXII 745609 . C G 2213 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.12;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2246,240,0 chrXII 745660 . C G 2030 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.06;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2063,219,0 chrXII 745671 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.248;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.097;QD=17.26;ReadPosRankSum=1.704;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2191,237,0 chrXII 745706 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.09;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2965,309,0 chrXII 746036 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3212,333,0 chrXII 747358 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.13;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2439,264,0 chrXII 747372 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.79;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1992,210,0 chrXII 747374 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.24;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1938,210,0 chrXII 747505 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=143;Dels=0.00;FS=10.613;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.207;QD=23.62;ReadPosRankSum=2.893;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3378,366,0 chrXII 747529 . G T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.08;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3467,361,0 chrXII 747808 . G A 1398 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=15.20;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1431,153,0 chrXII 747813 . A G 1389 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=80.4143;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=15.43;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1422,156,0 chrXII 747817 . T C 1340 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=82.3992;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=15.06;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1373,147,0 chrXII 747836 . T C 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;MQRankSum=-1.592;QD=13.87;ReadPosRankSum=1.697;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1406,150,0 chrXII 747877 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.99;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2027,219,0 chrXII 747900 . A C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.940;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.255;QD=20.79;ReadPosRankSum=1.700;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2299,246,0 chrXII 747929 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.46;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2447,273,0 chrXII 748236 . G A 5278.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.8514;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.99;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5278,553,0 chrXII 748299 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=3.500;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.416;QD=22.88;ReadPosRankSum=-0.220;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4530,472,0 chrXII 748362 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.4233;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.44;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4330,465,0 chrXII 748416 . A T 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.231;QD=22.67;ReadPosRankSum=1.717;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5168,567,0 chrXII 748497 . T A 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=185;Dels=0.00;FS=6.783;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=2.038;QD=22.19;ReadPosRankSum=2.357;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4106,447,0 chrXII 748572 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.665;QD=24.80;ReadPosRankSum=1.710;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3894,423,0 chrXII 748731 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.300;QD=22.37;ReadPosRankSum=2.295;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2874,315,0 chrXII 748735 . A T 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.128;QD=24.98;ReadPosRankSum=2.409;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:3055,315,0 chrXII 749136 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.31;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1832,198,0 chrXII 749273 . T C 2318 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.66;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2351,258,0 chrXII 749302 . C A 1958 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.25;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1991,207,0 chrXII 749514 . A T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.66;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3649,382,0 chrXII 749546 . T G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=127;Dels=0.00;FS=3.035;HaplotypeScore=13.0102;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-2.172;QD=19.83;ReadPosRankSum=2.410;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:2552,288,0 chrXII 749673 . G C 4329.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.03;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4329,474,0 chrXII 749793 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3664,393,0 chrXII 749934 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.60;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2723,294,0 chrXII 750324 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.96;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3042,330,0 chrXII 750337 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.03;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3363,357,0 chrXII 750485 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.51;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3775,388,0 chrXII 750621 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.32;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2349,243,0 chrXII 750669 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.92;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2209,243,0 chrXII 750835 . G C 2345 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2378,255,0 chrXII 750942 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.12;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2387,249,0 chrXII 750944 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.00;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2427,249,0 chrXII 750988 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.82;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2689,285,0 chrXII 751142 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.61;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2151,225,0 chrXII 751398 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.29;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2436,255,0 chrXII 751824 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.49;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2125,219,0 chrXII 751827 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.019;QD=22.41;ReadPosRankSum=1.658;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2140,228,0 chrXII 751890 . G A 1698 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1731,183,0 chrXII 752103 . C A 800 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=25.00;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:833,84,0 chrXII 752118 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.40;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:87:852,87,0 chrXII 752258 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.65;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1762,183,0 chrXII 752259 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.18;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1740,183,0 chrXII 752593 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.329;QD=24.28;ReadPosRankSum=1.708;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3569,390,0 chrXII 753079 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4350,460,0 chrXII 753525 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.829;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.298;QD=22.56;ReadPosRankSum=1.705;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2943,327,0 chrXII 753571 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3046,318,0 chrXII 754314 . A G 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.271;QD=22.66;ReadPosRankSum=1.523;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1914,204,0 chrXII 754317 . T A 1882 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=22.14;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1915,201,0 chrXII 754377 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.71;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1334,144,0 chrXII 754389 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.80;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1406,153,0 chrXII 754651 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3658,382,0 chrXII 754945 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=3.909;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.056;QD=24.76;ReadPosRankSum=1.676;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,122:127:99:3177,345,0 chrXII 754978 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.48;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2726,294,0 chrXII 755191 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.22;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4237,459,0 chrXII 755553 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3683,385,0 chrXII 755890 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5468;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.70;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4240,448,0 chrXII 755941 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.47;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3695,402,0 chrXII 755968 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.47;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3600,373,0 chrXII 756137 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.15;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3519,369,0 chrXII 756158 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=146;Dels=0.00;FS=6.049;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.297;QD=20.96;ReadPosRankSum=2.842;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3093,330,0 chrXII 756191 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=2.977;HaplotypeScore=6.2851;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.598;QD=21.99;ReadPosRankSum=2.417;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3299,351,0 chrXII 756805 . T A 5480.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.14;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5480,571,0 chrXII 757020 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=21.4377;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.48;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3146,330,0 chrXII 757068 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.22;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2610,279,0 chrXII 757090 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.63;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2500,270,0 chrXII 757131 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.25;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2701,288,0 chrXII 757367 . A G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=-0.779;QD=21.06;ReadPosRankSum=1.646;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1718,186,0 chrXII 757387 . C G 154.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.01;FS=3.522;HaplotypeScore=154.4635;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;MQRankSum=-1.091;QD=1.86;ReadPosRankSum=1.561;SB=-9.741e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:21:187,21,0 chrXII 757393 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.338;DP=86;Dels=0.00;FS=3.380;HaplotypeScore=148.3522;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=-0.067;QD=0.26;ReadPosRankSum=-4.497;SB=1.24 GT:AD:DP:GQ:PL 1/1:78,8:86:6:54,6,0 chrXII 757576 . C A 1478 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=50.9945;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.81;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1511,159,0 chrXII 757763 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.38;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2471,258,0 chrXII 757817 . C G 2337 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=25.40;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2370,252,0 chrXII 758082 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.93;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3014,330,0 chrXII 758099 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=2.827;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.725;QD=22.08;ReadPosRankSum=2.412;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2881,315,0 chrXII 758246 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=168;Dels=0.00;FS=10.448;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.788;QD=22.14;ReadPosRankSum=2.921;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3719,417,0 chrXII 758414 . A C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=173;Dels=0.00;FS=3.033;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-0.379;QD=20.47;ReadPosRankSum=2.335;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3541,393,0 chrXII 758417 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-1.489;QD=21.05;ReadPosRankSum=1.692;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3600,390,0 chrXII 758451 . A C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.55;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3339,372,0 chrXII 758455 . T A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.99;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3618,373,0 chrXII 758492 . C G 3843.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.91;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3843,411,0 chrXII 758524 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.66;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4297,462,0 chrXII 758595 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.9790;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.48;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4179,436,0 chrXII 758853 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3666,382,0 chrXII 758959 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=150;Dels=0.00;FS=5.137;HaplotypeScore=15.6300;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.811;QD=23.11;ReadPosRankSum=3.377;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:99:3466,369,0 chrXII 759015 . A G 2862 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2895,312,0 chrXII 759162 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.56;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2275,258,0 chrXII 759216 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.59;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2403,252,0 chrXII 759268 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.11;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3328,363,0 chrXII 759430 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=4.486;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;MQRankSum=-1.615;QD=17.18;ReadPosRankSum=1.693;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3074,336,0 chrXII 759438 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=16.03;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:2950,321,0 chrXII 759450 . G T 2134 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.680;HaplotypeScore=5.3610;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=0.901;QD=12.19;ReadPosRankSum=1.475;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2167,246,0 chrXII 759452 . A G 2084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.516;HaplotypeScore=6.0950;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=0.050;QD=11.98;ReadPosRankSum=1.652;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:2117,240,0 chrXII 759458 . A C 2474 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0006;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=-0.662;QD=13.82;ReadPosRankSum=1.693;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:2507,259,0 chrXII 759842 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.872;QD=21.46;ReadPosRankSum=1.707;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2973,318,0 chrXII 759860 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.235;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.710;QD=20.97;ReadPosRankSum=1.682;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2948,315,0 chrXII 759872 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.07;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2526,273,0 chrXII 759887 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.58;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2705,282,0 chrXII 759985 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=171;Dels=0.00;FS=12.936;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.201;QD=24.82;ReadPosRankSum=3.378;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:4245,451,0 chrXII 760025 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=3.009;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.688;QD=24.43;ReadPosRankSum=2.419;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3885,426,0 chrXII 760163 . C G 2777 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.76;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2810,303,0 chrXII 760199 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.90;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2689,294,0 chrXII 760343 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.49;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1674,180,0 chrXII 760390 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=23.26;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1847,192,0 chrXII 760396 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=22.33;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1797,195,0 chrXII 760502 . C A 2191 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=24.08;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2224,243,0 chrXII 760603 . C T 2216 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.4225;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=17.31;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2249,234,0 chrXII 760610 . A G 1918 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=130;Dels=0.00;FS=7.137;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-1.725;QD=14.75;ReadPosRankSum=2.412;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:1951,216,0 chrXII 760613 . A G 1835 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-1.415;QD=15.29;ReadPosRankSum=1.703;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1868,201,0 chrXII 760615 . T A 1837 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-1.674;QD=15.31;ReadPosRankSum=1.703;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1870,201,0 chrXII 760639 . T C 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;MQRankSum=-1.645;QD=13.03;ReadPosRankSum=1.674;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1584,168,0 chrXII 760652 . C A 1716 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=15.05;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1749,183,0 chrXII 760719 . A T 2332 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.79;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2365,255,0 chrXII 761014 . T A 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.2834;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.114;QD=20.46;ReadPosRankSum=1.666;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3245,348,0 chrXII 761052 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.9590;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.43;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3140,324,0 chrXII 761145 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.58;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4351,457,0 chrXII 761210 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.77;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3244,342,0 chrXII 761214 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.11;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3195,333,0 chrXII 761335 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=2.896;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.120;QD=23.43;ReadPosRankSum=2.402;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3631,399,0 chrXII 761396 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.97;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3406,372,0 chrXII 761426 . A T 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.549;QD=24.20;ReadPosRankSum=1.690;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3968,409,0 chrXII 761502 . C G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.63;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4051,444,0 chrXII 761602 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.99;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:5016,517,0 chrXII 761922 . T A 2981 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3014,310,0 chrXII 762049 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3450,366,0 chrXII 762111 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3209,339,0 chrXII 762180 . A G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.216;QD=21.79;ReadPosRankSum=2.412;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2888,306,0 chrXII 762220 . T G 2677 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.31;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2710,291,0 chrXII 762443 . C A 718 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.94;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:78:751,78,0 chrXII 762492 . A G 401 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:434,48,0 chrXII 762817 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2420,255,0 chrXII 762938 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.310;QD=24.60;ReadPosRankSum=1.680;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3321,360,0 chrXII 763151 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5884;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.126;QD=23.41;ReadPosRankSum=1.689;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3793,408,0 chrXII 763199 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.3230;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.02;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3776,399,0 chrXII 763214 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.42;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3721,393,0 chrXII 763325 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5558;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.97;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3468,375,0 chrXII 763412 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7414;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.90;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4300,459,0 chrXII 763502 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.58;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3608,396,0 chrXII 763666 . C A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3792,394,0 chrXII 763742 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3779,402,0 chrXII 764240 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=2.927;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.281;QD=23.53;ReadPosRankSum=2.396;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4377,471,0 chrXII 764339 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=191;Dels=0.00;FS=2.861;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.175;QD=21.86;ReadPosRankSum=2.320;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4176,456,0 chrXII 764389 . G T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.22;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4066,438,0 chrXII 764398 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.817;QD=22.95;ReadPosRankSum=1.693;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4108,435,0 chrXII 764454 . A G 3083 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.34;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3116,336,0 chrXII 764481 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=136;Dels=0.00;FS=9.629;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.261;QD=21.40;ReadPosRankSum=2.948;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2943,327,0 chrXII 764614 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=3.036;HaplotypeScore=10.1631;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.331;QD=21.57;ReadPosRankSum=2.417;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3279,351,0 chrXII 764623 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.029;QD=22.49;ReadPosRankSum=1.707;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3137,339,0 chrXII 764781 . A C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=7.5205;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.44;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3837,414,0 chrXII 764796 . T A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.70;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4254,445,0 chrXII 765047 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.622;QD=22.40;ReadPosRankSum=1.716;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4928,520,0 chrXII 765566 . A G 5648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=264;Dels=0.00;FS=3.179;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.375;QD=21.39;ReadPosRankSum=1.692;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:1,261:264:99:5648,621,0 chrXII 765605 . G A 5589.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=18.7529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.70;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5589,592,0 chrXII 765881 . A C 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.8653;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.411;QD=21.01;ReadPosRankSum=1.644;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4979,537,0 chrXII 765920 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=177;Dels=0.00;FS=2.582;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-1.449;QD=19.63;ReadPosRankSum=2.938;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3474,381,0 chrXII 765921 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=20.65;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3572,375,0 chrXII 765944 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=18.17;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3194,351,0 chrXII 765971 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.37;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3399,357,0 chrXII 765989 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.51;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3345,348,0 chrXII 766006 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.96;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3393,349,0 chrXII 766039 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.85;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3086,339,0 chrXII 766116 . A T 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=3.027;HaplotypeScore=105.9282;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.292;QD=21.55;ReadPosRankSum=2.409;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2662,285,0 chrXII 766225 . T G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.202;QD=24.33;ReadPosRankSum=1.701;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2734,297,0 chrXII 766489 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.0527;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=14.68;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:591,63,0 chrXII 766775 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.55;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5057,540,0 chrXII 767243 . G A 2792 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.52;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2825,294,0 chrXII 767244 . G A 2770 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.34;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2803,294,0 chrXII 767252 . T G 2310 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.016;QD=22.00;ReadPosRankSum=1.633;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2343,255,0 chrXII 767369 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.74;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2942,301,0 chrXII 767560 . G T 1611 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.48;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1644,171,0 chrXII 768100 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.068;QD=25.57;ReadPosRankSum=1.698;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2641,276,0 chrXII 768577 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.272;QD=24.14;ReadPosRankSum=1.640;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2761,306,0 chrXII 768623 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=110;Dels=0.00;FS=3.047;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.569;QD=22.77;ReadPosRankSum=2.382;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2538,273,0 chrXII 768836 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=21.45;ReadPosRankSum=1.704;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2693,288,0 chrXII 769193 . T C 605 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.52;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:638,69,0 chrXII 769226 . T C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.606;QD=21.83;ReadPosRankSum=1.646;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:99:928,102,0 chrXII 769312 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1192,126,0 chrXII 769888 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.400;QD=24.35;ReadPosRankSum=1.710;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3798,411,0 chrXII 770122 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.2939;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.31;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2610,279,0 chrXII 770182 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.67;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2882,309,0 chrXII 770323 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.16;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3126,336,0 chrXII 770364 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.81;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2934,306,0 chrXII 770488 . T G 3645.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.98;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3645,405,0 chrXII 770630 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.6242;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.49;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4252,448,0 chrXII 770842 . A T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.70;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4744,505,0 chrXII 770846 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.33;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4577,498,0 chrXII 770890 . T A 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=4.523;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.454;QD=20.63;ReadPosRankSum=1.695;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3857,414,0 chrXII 774096 . G C 2955 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.27;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2988,321,0 chrXII 774720 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.25;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4091,430,0 chrXII 774798 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.31;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3226,328,0 chrXII 774849 . A G 3002 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.24;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3035,324,0 chrXII 775104 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=23.63;ReadPosRankSum=1.695;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2231,240,0 chrXII 775524 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.45;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2894,297,0 chrXII 775537 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.92;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2898,315,0 chrXII 777814 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=158;Dels=0.00;FS=5.637;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.555;QD=22.68;ReadPosRankSum=2.916;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3583,387,0 chrXII 777868 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.6520;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.20;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2747,300,0 chrXII 778305 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3754,402,0 chrXII 779222 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4698,493,0 chrXII 779607 . T C 4256.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3947;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4256,453,0 chrXII 780114 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4793,508,0 chrXII 780550 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3934,415,0 chrXII 780728 . C G 3147 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3180,339,0 chrXII 780841 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1401,153,0 chrXII 782031 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3084,324,0 chrXII 782080 . G T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.82;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3276,348,0 chrXII 782204 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.88;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3408,372,0 chrXII 782839 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=131;Dels=0.00;FS=5.155;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.247;QD=21.59;ReadPosRankSum=3.351;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2861,312,0 chrXII 782905 . G T 3103 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3136,322,0 chrXII 783055 . T G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.469;QD=23.09;ReadPosRankSum=1.660;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2273,252,0 chrXII 783530 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.411;QD=23.18;ReadPosRankSum=2.397;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:2212,237,0 chrXII 784218 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3925;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=24.35;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4456,469,0 chrXII 784477 . T A 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=12.1654;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.980;QD=22.98;ReadPosRankSum=1.699;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2492,264,0 chrXII 784820 . C G 2151 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2184,234,0 chrXII 785227 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3639,390,0 chrXII 785340 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.40;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3855,400,0 chrXII 785350 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.46;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3548,372,0 chrXII 785428 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.28;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4609,478,0 chrXII 786201 . G T 2536 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.92;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2569,267,0 chrXII 786233 . T C 2101 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8039;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=23.09;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2134,237,0 chrXII 786288 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.11;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1951,204,0 chrXII 786333 . T C 2092 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.26;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2125,231,0 chrXII 786375 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=19.76;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1890,201,0 chrXII 786420 . C T 1275 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=12.88;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1308,138,0 chrXII 786421 . A G 1252 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=12.52;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1285,138,0 chrXII 786429 . A C 1018 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;MQRankSum=-1.631;QD=9.88;ReadPosRankSum=1.665;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1051,114,0 chrXII 786436 . A G 894 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=9.22;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:927,102,0 chrXII 786439 . C T 880 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=9.26;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:96:913,96,0 chrXII 786447 . A G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=4.680;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;MQRankSum=-0.590;QD=8.51;ReadPosRankSum=1.695;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:93:850,93,0 chrXII 786552 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1913;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.84;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2981,312,0 chrXII 786562 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.431;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.359;QD=21.17;ReadPosRankSum=1.679;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2785,294,0 chrXII 786826 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.25;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3686,396,0 chrXII 786991 . A G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.698;QD=22.98;ReadPosRankSum=1.704;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2951,327,0 chrXII 787039 . G C 2744 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.78;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2777,309,0 chrXII 787060 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.487;HaplotypeScore=8.1596;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.291;QD=22.14;ReadPosRankSum=1.677;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2801,300,0 chrXII 787306 . C T 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;DP=113;Dels=0.00;FS=9.597;HaplotypeScore=2.2788;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.101;QD=18.70;ReadPosRankSum=2.758;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2146,231,0 chrXII 787307 . T A 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=114;Dels=0.00;FS=13.378;HaplotypeScore=6.2521;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.609;QD=18.30;ReadPosRankSum=3.238;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:5,109:114:99:2119,231,0 chrXII 787382 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.27;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2848,306,0 chrXII 787510 . A C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.79;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4314,474,0 chrXII 787756 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=178;Dels=0.00;FS=16.587;HaplotypeScore=13.4882;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.172;QD=22.75;ReadPosRankSum=2.880;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:4049,444,0 chrXII 788350 . T C 6058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=250;Dels=0.00;FS=10.487;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=2.216;QD=24.23;ReadPosRankSum=2.947;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:3,244:250:99:6058,658,0 chrXII 788475 . A G 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.2660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.169;QD=23.43;ReadPosRankSum=1.716;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,214:218:99:5108,547,0 chrXII 788536 . A G 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=239;Dels=0.00;FS=10.120;HaplotypeScore=13.3273;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.249;QD=20.32;ReadPosRankSum=2.928;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:4856,534,0 chrXII 788548 . G A 5117.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.64;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5117,532,0 chrXII 788601 . C A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=17.44;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3890,409,0 chrXII 788615 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7937;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=17.20;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3526,369,0 chrXII 788626 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=219;Dels=0.00;FS=6.490;HaplotypeScore=3.9802;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=-1.586;QD=16.40;ReadPosRankSum=2.416;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:3592,396,0 chrXII 788638 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=212;Dels=0.00;FS=6.555;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-1.374;QD=15.80;ReadPosRankSum=2.414;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:3349,357,0 chrXII 788663 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.163;DP=198;Dels=0.00;FS=14.791;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=-2.214;QD=13.19;ReadPosRankSum=4.083;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:6,191:198:99:2645,279,0 chrXII 788682 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=15.36;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3258,351,0 chrXII 788815 . C T 5233.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=20.3766;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=23.90;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5233,547,0 chrXII 788874 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.7301;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=23.33;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5015,532,0 chrXII 788973 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=23.86;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4700,490,0 chrXII 788987 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=24.39;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4585,481,0 chrXII 789047 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=196;Dels=0.00;FS=3.003;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.783;QD=22.49;ReadPosRankSum=2.425;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4409,474,0 chrXII 789096 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=18.68;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2797,294,0 chrXII 789104 . T G 2004 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=16.03;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2037,225,0 chrXII 789125 . T G 979 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=11.65;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1012,111,0 chrXII 789130 . C T 817 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.19;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:850,90,0 chrXII 789131 . A G 767 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.45;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:87:800,87,0 chrXII 789140 . A G 511 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=43;Dels=0.00;FS=6.152;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.644;QD=11.88;ReadPosRankSum=2.837;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:3,40:43:60:544,60,0 chrXII 789142 . G A 464 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.60;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:54:497,54,0 chrXII 789146 . T A 452 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.70;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:485,51,0 chrXII 789150 . A G 184.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.371;QD=12.27;ReadPosRankSum=2.526;SB=-8.302e+01 GT:AD:DP:GQ:PL 1/1:3,12:15:24:217,24,0 chrXII 789151 . C T 193.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.09;SB=-8.502e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:226,24,0 chrXII 789152 . A G 191.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.92;SB=-8.402e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:224,24,0 chrXII 789188 . T G 106.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.013;QD=2.80;ReadPosRankSum=2.321;SB=-2.813e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:15:139,15,0 chrXII 789193 . C T 162.06 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.68;SB=-3.521e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:21:195,21,0 chrXII 789194 . A G 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.43;SB=-3.281e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:21:184,21,0 chrXII 789209 . T G 1027 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=118;Dels=0.00;FS=8.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.029;QD=8.70;ReadPosRankSum=3.767;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:5,113:118:99:1060,111,0 chrXII 789214 . C T 1190 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.83;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1223,129,0 chrXII 789215 . A G 1144 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.45;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1177,129,0 chrXII 789226 . G A 282.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;DP=160;Dels=0.00;FS=3.006;HaplotypeScore=2.8189;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.419;QD=1.76;ReadPosRankSum=-6.966;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:107,53:160:99:312,0,784 chrXII 789230 . G A 321.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592;DP=165;Dels=0.00;FS=3.850;HaplotypeScore=2.8189;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.469;QD=1.95;ReadPosRankSum=-7.259;SB=-5.180e+02 GT:AD:DP:GQ:PL 0/1:107,58:165:99:351,0,778 chrXII 789234 . A G 367.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;DP=171;Dels=0.00;FS=5.808;HaplotypeScore=7.3339;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.683;QD=2.15;ReadPosRankSum=-6.617;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:108,62:171:99:397,0,757 chrXII 789247 . A G 580.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;DP=189;Dels=0.00;FS=9.703;HaplotypeScore=8.3834;MLEAC=1;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=0.655;QD=3.07;ReadPosRankSum=-1.577;SB=-8.410e+02 GT:AD:DP:GQ:PL 0/1:106,83:189:99:610,0,734 chrXII 789259 . A G 811.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.137;DP=211;Dels=0.00;FS=11.388;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=0;MQRankSum=-1.981;QD=3.84;ReadPosRankSum=5.028;SB=-1.031e+03 GT:AD:DP:GQ:PL 0/1:104,107:211:99:841,0,700 chrXII 789264 . T C 898.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060;DP=215;Dels=0.00;FS=15.454;HaplotypeScore=1.9705;MLEAC=1;MLEAF=0.500;MQ=32.31;MQ0=0;MQRankSum=2.318;QD=4.18;ReadPosRankSum=7.658;SB=-1.115e+03 GT:AD:DP:GQ:PL 0/1:103,112:215:99:928,0,647 chrXII 789266 . G A 964.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DP=216;Dels=0.00;FS=18.470;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=0;MQRankSum=-0.110;QD=4.46;ReadPosRankSum=8.416;SB=-1.171e+03 GT:AD:DP:GQ:PL 0/1:100,116:216:99:994,0,646 chrXII 789268 . G A 948.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.188;DP=211;Dels=0.00;FS=17.353;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=1.880;QD=4.49;ReadPosRankSum=9.810;SB=-1.142e+03 GT:AD:DP:GQ:PL 0/1:95,116:211:99:978,0,619 chrXII 789269 . G A 946.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DP=211;Dels=0.00;FS=17.353;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=1.535;QD=4.48;ReadPosRankSum=10.517;SB=-1.142e+03 GT:AD:DP:GQ:PL 0/1:95,116:211:99:976,0,635 chrXII 789272 . G A 556.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=217;Dels=0.00;FS=11.502;HaplotypeScore=3.3449;MLEAC=1;MLEAF=0.500;MQ=33.63;MQ0=0;MQRankSum=-2.041;QD=2.56;ReadPosRankSum=-8.869;SB=-6.960e+02 GT:AD:DP:GQ:PL 0/1:131,85:217:99:586,0,1099 chrXII 789275 . G A 492.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.028;DP=204;Dels=0.00;FS=7.372;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=34.89;MQ0=0;MQRankSum=-1.735;QD=2.41;ReadPosRankSum=-8.613;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:136,68:204:99:522,0,1168 chrXII 789280 . A G 347.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DP=206;Dels=0.00;FS=14.084;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=37.25;MQ0=0;MQRankSum=-3.727;QD=1.68;ReadPosRankSum=-9.852;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:147,54:206:99:377,0,1355 chrXII 789615 . C G 2581 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.06;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2614,285,0 chrXII 790301 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=2.904;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.679;QD=22.91;ReadPosRankSum=2.386;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2668,288,0 chrXII 790397 . G T 2663 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.21;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2696,294,0 chrXII 790484 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.080;QD=21.75;ReadPosRankSum=1.687;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3349,357,0 chrXII 790500 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.79;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3192,348,0 chrXII 790747 . C T 7600.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.76;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7600,787,0 chrXII 791005 . C A 5912.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=16.7809;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.32;SB=-4.013e+03 GT:AD:DP:GQ:PL 1/1:0,303:306:99:5912,625,0 chrXII 791024 . T C 6160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=325;Dels=0.00;FS=2.981;HaplotypeScore=12.9057;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.987;QD=18.95;ReadPosRankSum=2.389;SB=-3.866e+03 GT:AD:DP:GQ:PL 1/1:2,320:325:99:6160,661,0 chrXII 791117 . C T 6917.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=22.3458;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=19.54;SB=-4.312e+03 GT:AD:DP:GQ:PL 1/1:0,353:354:99:6917,730,0 chrXII 791350 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.0651;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.54;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4124,436,0 chrXII 791497 . G T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.02;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4629,493,0 chrXII 791996 . A C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.088;QD=23.37;ReadPosRankSum=1.615;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1412,153,0 chrXII 792187 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.46;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1769,183,0 chrXII 792203 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.00;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1793,192,0 chrXII 792265 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.24;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2158,222,0 chrXII 792277 . C G 1977 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.57;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2010,210,0 chrXII 792290 . A T 1952 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.33;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1985,216,0 chrXII 792417 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=24.30;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4034,421,0 chrXII 792538 . C G 4696.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=24.72;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4696,498,0 chrXII 792556 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=25.24;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4443,468,0 chrXII 792571 . T C 3162 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=21.66;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3195,357,0 chrXII 792585 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=-2.011;QD=19.17;ReadPosRankSum=2.183;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2506,273,0 chrXII 792600 . G C 1747 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=18.78;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1780,204,0 chrXII 792601 . T G 1805 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=14.960;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=1.548;QD=19.20;ReadPosRankSum=1.695;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1838,204,0 chrXII 792605 . T C 1695 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=18.03;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1728,201,0 chrXII 792606 . A C 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=15.84;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1522,189,0 chrXII 792640 . A C 1452 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.153;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-2.199;QD=13.32;ReadPosRankSum=2.404;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1485,180,0 chrXII 792641 . C A 1452 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.984;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;MQRankSum=-2.028;QD=12.96;ReadPosRankSum=2.272;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1485,180,0 chrXII 792644 . G T 1863 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=14.44;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1896,201,0 chrXII 792691 . C G 2869 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=16.98;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2902,321,0 chrXII 792702 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=17.38;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2883,312,0 chrXII 792737 . A T 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.007;DP=137;Dels=0.00;FS=8.448;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;MQRankSum=-2.441;QD=15.97;ReadPosRankSum=3.394;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2221,249,0 chrXII 792747 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=15.21;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1706,192,0 chrXII 792764 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=12.65;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1070,117,0 chrXII 792789 . A T 491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=7.270;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=1.353;QD=7.67;ReadPosRankSum=1.678;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:57:524,57,0 chrXII 792807 . T C 373 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=6.78;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:45:406,45,0 chrXII 792821 . A G 759 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=0;QD=11.33;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:792,90,0 chrXII 792826 . C T 820 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=12.06;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:853,93,0 chrXII 792875 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=21.51;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1926,216,0 chrXII 792896 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=23.21;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2261,246,0 chrXII 792972 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.482;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-1.732;QD=24.60;ReadPosRankSum=1.653;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2198,237,0 chrXII 793009 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=26.35;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2167,225,0 chrXII 793142 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.14;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2393,243,0 chrXII 793293 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.24;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2961,318,0 chrXII 793335 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=23.91;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3395,354,0 chrXII 793353 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=23.05;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3480,369,0 chrXII 793421 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=24.03;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4374,466,0 chrXII 793518 . A T 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;MQRankSum=-0.906;QD=19.70;ReadPosRankSum=1.652;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2594,279,0 chrXII 793519 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.295;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;MQRankSum=-1.045;QD=19.33;ReadPosRankSum=1.705;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2488,276,0 chrXII 793539 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=17.94;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2168,234,0 chrXII 793555 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=16.09;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2092,222,0 chrXII 793558 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=17.41;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2140,234,0 chrXII 793651 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.18;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2677,285,0 chrXII 793681 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=17.00;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1937,213,0 chrXII 793689 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.76;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1845,207,0 chrXII 793695 . A G 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=108;Dels=0.00;FS=3.045;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-1.743;QD=15.17;ReadPosRankSum=2.381;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1671,183,0 chrXII 793723 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=11.72;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1275,144,0 chrXII 793732 . G C 1404 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=14.78;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1437,159,0 chrXII 793757 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=0;QD=17.14;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1696,189,0 chrXII 793796 . G T 2404 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=21.27;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2437,261,0 chrXII 793903 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.47;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2010,204,0 chrXII 794003 . T G 1506 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;MQRankSum=0.958;QD=16.02;ReadPosRankSum=1.695;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1539,171,0 chrXII 794006 . T C 1390 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=15.98;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1423,153,0 chrXII 794008 . T C 1395 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=16.22;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1428,153,0 chrXII 794074 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.29;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1589,168,0 chrXII 794238 . T A 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=120;Dels=0.00;FS=2.667;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.363;QD=24.21;ReadPosRankSum=2.286;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2938,312,0 chrXII 794427 . T A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=26.02;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3799,394,0 chrXII 794440 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.27;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3664,379,0 chrXII 794633 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.70;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2124,225,0 chrXII 794638 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.34;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1904,207,0 chrXII 795036 . C A 2716 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2749,297,0 chrXII 795312 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.35;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2205,228,0 chrXII 795548 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.69;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2379,255,0 chrXII 795999 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.429;QD=23.10;ReadPosRankSum=1.700;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2551,270,0 chrXII 796025 . A T 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.020;QD=23.97;ReadPosRankSum=1.667;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2598,267,0 chrXII 796042 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=23.07;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2248,234,0 chrXII 796074 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.82;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1657,180,0 chrXII 796093 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.79;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1711,180,0 chrXII 796132 . T A 2134 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.81;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2167,228,0 chrXII 796413 . T A 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4499;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.340;QD=19.85;ReadPosRankSum=2.381;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2891,306,0 chrXII 796574 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=146;Dels=0.00;FS=4.150;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.812;QD=19.47;ReadPosRankSum=1.684;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2876,309,0 chrXII 796621 . A T 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=2.902;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.423;QD=22.93;ReadPosRankSum=2.366;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4059,427,0 chrXII 796703 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.16;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3900,406,0 chrXII 796778 . G C 2718 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.74;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2751,294,0 chrXII 796782 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.05;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2539,273,0 chrXII 796946 . T C 2898 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.37;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2931,312,0 chrXII 797270 . G A 267 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=57.0240;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=3.10;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:36:300,36,0 chrXII 797627 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5250,544,0 chrXII 797757 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.7059;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=16.54;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2646,279,0 chrXII 797945 . G A 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.299;QD=21.77;ReadPosRankSum=-0.090;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2580,251,0 chrXII 797990 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.85;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2262,234,0 chrXII 797996 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.09;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1942,204,0 chrXII 798014 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.1105;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.67;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2098,225,0 chrXII 798050 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.14;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2337,246,0 chrXII 798121 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.73;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2630,282,0 chrXII 798281 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.77;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3052,318,0 chrXII 798476 . C A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8197;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.85;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3578,373,0 chrXII 798538 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3559,375,0 chrXII 798683 . A C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3634,393,0 chrXII 798842 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=21.0755;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.04;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3755,405,0 chrXII 799085 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.648;QD=22.77;ReadPosRankSum=1.693;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4075,441,0 chrXII 799107 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=9.8112;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.18;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3713,388,0 chrXII 799110 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.6158;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-1.170;QD=19.91;ReadPosRankSum=1.713;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3703,408,0 chrXII 799247 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=27.0135;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.42;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4081,441,0 chrXII 799388 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.51;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4117,433,0 chrXII 799490 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.14;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3814,397,0 chrXII 799628 . A T 2402 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2435,255,0 chrXII 799693 . A C 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.646;QD=21.07;ReadPosRankSum=1.646;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1719,192,0 chrXII 799724 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.91;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1765,195,0 chrXII 799947 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.80;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2627,270,0 chrXII 800195 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.09;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2481,261,0 chrXII 800240 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.455;QD=22.68;ReadPosRankSum=1.663;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2301,246,0 chrXII 800495 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.404;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.968;QD=23.90;ReadPosRankSum=1.705;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3068,333,0 chrXII 800591 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.326;QD=21.51;ReadPosRankSum=1.670;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2442,261,0 chrXII 800645 . C A 2644 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.50;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2677,294,0 chrXII 800672 . T G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.321;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.004;QD=21.03;ReadPosRankSum=1.674;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2536,276,0 chrXII 800998 . T G 2663 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.57;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2696,288,0 chrXII 801107 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.84;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2894,312,0 chrXII 801184 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.23;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2844,297,0 chrXII 801257 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.03;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3096,336,0 chrXII 801972 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.23;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4321,480,0 chrXII 802066 . A T 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.967;QD=22.85;ReadPosRankSum=1.711;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3724,393,0 chrXII 802287 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.5146;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.57;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3247,345,0 chrXII 802510 . T A 1611 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.48;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1644,174,0 chrXII 802668 . T C 2910 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2943,318,0 chrXII 802767 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=7.847;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.163;QD=24.94;ReadPosRankSum=1.629;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1704,186,0 chrXII 803013 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.97;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4613,498,0 chrXII 803022 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.620;QD=20.26;ReadPosRankSum=1.700;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4396,492,0 chrXII 803070 . T C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=230;Dels=0.00;FS=7.436;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.294;QD=20.31;ReadPosRankSum=2.386;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4672,516,0 chrXII 803175 . C T 5224.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.5147;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.14;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5224,547,0 chrXII 803215 . A G 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=231;Dels=0.00;FS=9.128;HaplotypeScore=24.4314;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.565;QD=19.77;ReadPosRankSum=3.006;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:4,226:231:99:4568,487,0 chrXII 803430 . G C 5479.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.6542;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.64;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:5479,606,0 chrXII 803492 . G A 6960.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.84;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6960,736,0 chrXII 803517 . C A 7413.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.55;SB=-3.958e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:7413,802,0 chrXII 803546 . T C 6491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=275;Dels=0.00;FS=3.026;HaplotypeScore=16.7240;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.658;QD=23.60;ReadPosRankSum=2.396;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:6491,706,0 chrXII 803736 . C A 5459.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.00;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:5459,577,0 chrXII 803754 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.821;DP=270;Dels=0.00;FS=12.030;HaplotypeScore=3.6040;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-0.281;QD=17.61;ReadPosRankSum=3.815;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:5,264:270:99:4754,516,0 chrXII 803773 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=5.0481;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=15.24;SB=-3.346e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:4115,456,0 chrXII 803775 . A C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.2949;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=14.80;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:0,270:275:99:4070,453,0 chrXII 803833 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=287;Dels=0.01;FS=0.000;HaplotypeScore=25.1036;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.183;QD=17.13;ReadPosRankSum=1.720;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:4916,555,0 chrXII 803865 . G A 6754.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=18.2766;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.29;SB=-3.650e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6754,712,0 chrXII 804054 . C G 5641.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=23.7815;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.74;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5641,598,0 chrXII 804204 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=21.4993;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.986;QD=21.98;ReadPosRankSum=1.685;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4924,529,0 chrXII 804368 . T A 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.3715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.377;QD=22.48;ReadPosRankSum=1.698;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4541,462,0 chrXII 804612 . G C 5174.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.6068;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.63;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5174,567,0 chrXII 804683 . G A 5396.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=23.6642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.16;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:5396,571,0 chrXII 804894 . G A 5732.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.6381;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.08;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5732,607,0 chrXII 804978 . T C 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=232;Dels=0.00;FS=6.062;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.341;QD=24.00;ReadPosRankSum=2.943;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:3,228:232:99:5567,595,0 chrXII 805190 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=2.831;HaplotypeScore=14.5024;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.475;QD=22.70;ReadPosRankSum=2.410;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4177,450,0 chrXII 805437 . T G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=153;Dels=0.00;FS=7.553;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.267;QD=22.30;ReadPosRankSum=2.417;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3412,378,0 chrXII 805452 . T A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.16;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3368,351,0 chrXII 805554 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2650,273,0 chrXII 805710 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.55;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2468,276,0 chrXII 805896 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=133;Dels=0.00;FS=7.493;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.494;QD=22.19;ReadPosRankSum=2.357;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2984,333,0 chrXII 805970 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.639;QD=23.93;ReadPosRankSum=1.686;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3565,390,0 chrXII 806179 . A G 6005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=237;Dels=0.00;FS=3.476;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.160;QD=25.34;ReadPosRankSum=1.717;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:6005,640,0 chrXII 806728 . C G 2415 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.64;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2448,261,0 chrXII 806918 . T A 334 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=13.36;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:39:367,39,0 chrXII 806928 . G C 319 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.39;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:39:352,39,0 chrXII 806941 . A G 295 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=10.54;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:36:328,36,0 chrXII 806943 . C A 314 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.21;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:36:347,36,0 chrXII 806954 . C T 276 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=9.52;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:309,33,0 chrXII 806956 . C T 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=11.55;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:368,39,0 chrXII 806963 . C G 258 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=9.92;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:33:291,33,0 chrXII 806965 . T C 259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-1.733;QD=9.59;ReadPosRankSum=1.605;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:33:292,33,0 chrXII 806972 . T C 246 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=-1.733;QD=7.45;ReadPosRankSum=1.628;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:33:279,33,0 chrXII 806983 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=7.95;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:36:359,36,0 chrXII 807004 . A G 306 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=7.29;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:36:339,36,0 chrXII 807074 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=24.60;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1681,177,0 chrXII 807120 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=1.195;QD=22.64;ReadPosRankSum=1.673;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1346,141,0 chrXII 807138 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=21.19;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1368,153,0 chrXII 807151 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=22.89;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1452,150,0 chrXII 807178 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=19.86;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,150,0 chrXII 807250 . A C 2285 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.56;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2318,258,0 chrXII 807281 . G C 1759 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.12;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1792,198,0 chrXII 807311 . C A 1194 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=14.92;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1227,132,0 chrXII 807344 . C A 840 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=12.73;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:93:873,93,0 chrXII 807361 . T C 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=-1.597;QD=15.13;ReadPosRankSum=1.687;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1198,129,0 chrXII 807455 . A T 2266 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.85;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2299,243,0 chrXII 807496 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=84;Dels=0.00;FS=3.770;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.064;QD=21.17;ReadPosRankSum=1.561;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1811,201,0 chrXII 807561 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=25.39;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2674,276,0 chrXII 807603 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.89;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2398,252,0 chrXII 807708 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=130;Dels=0.00;FS=6.110;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.419;QD=25.15;ReadPosRankSum=2.900;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3270,354,0 chrXII 807737 . C G 3126 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.23;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3159,336,0 chrXII 807751 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.60;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3030,330,0 chrXII 807795 . C A 1611 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.52;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1644,174,0 chrXII 807813 . A T 1615 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=18.56;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1648,180,0 chrXII 807829 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.042;QD=18.38;ReadPosRankSum=1.690;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1540,168,0 chrXII 807870 . T A 2179 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.81;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2212,237,0 chrXII 808083 . T A 2566 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.98;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2599,270,0 chrXII 808098 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.10;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2103,222,0 chrXII 808189 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.42;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3272,348,0 chrXII 808209 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=24.71;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2998,315,0 chrXII 808279 . T A 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.102;HaplotypeScore=10.7912;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.091;QD=24.44;ReadPosRankSum=1.700;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2672,276,0 chrXII 808434 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=24.78;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2189,225,0 chrXII 808452 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.72;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1760,186,0 chrXII 808468 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=74;Dels=0.00;FS=2.950;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.120;QD=20.54;ReadPosRankSum=2.381;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:99:1553,171,0 chrXII 808557 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=4.058;HaplotypeScore=10.1306;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.371;QD=24.38;ReadPosRankSum=1.701;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2788,303,0 chrXII 808607 . G T 2779 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.59;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2812,297,0 chrXII 808623 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.30;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2843,300,0 chrXII 808679 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=5.252;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.503;QD=21.14;ReadPosRankSum=1.676;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2676,282,0 chrXII 808708 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=8.313;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=2.114;QD=22.42;ReadPosRankSum=2.412;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2992,327,0 chrXII 808734 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.439;DP=142;Dels=0.00;FS=3.599;HaplotypeScore=9.8121;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.147;QD=21.15;ReadPosRankSum=-0.781;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3036,327,0 chrXII 808841 . G A 5111.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.4698;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.44;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5111,567,0 chrXII 808892 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=23.07;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4729,496,0 chrXII 808950 . G C 5544.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=23.79;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5544,595,0 chrXII 809005 . A T 6979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.0022;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.984;QD=25.75;ReadPosRankSum=0.680;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:6979,721,0 chrXII 809043 . A T 5735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=3.795;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.527;QD=24.93;ReadPosRankSum=1.717;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5735,621,0 chrXII 809080 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=184;Dels=0.00;FS=6.092;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-1.687;QD=20.45;ReadPosRankSum=2.918;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3762,399,0 chrXII 809082 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=19.93;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3668,411,0 chrXII 809130 . G A 3278.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=17.16;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3278,342,0 chrXII 809132 . T C 3016 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=192;Dels=0.00;FS=14.315;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-1.534;QD=15.71;ReadPosRankSum=2.963;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:3049,339,0 chrXII 809137 . C G 3326.01 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.8268;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=17.23;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3326,363,0 chrXII 809231 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=178.3039;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.82;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4309,474,0 chrXII 809333 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=23.85;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2871,297,0 chrXII 809343 . T C 2515 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.66;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2548,279,0 chrXII 809434 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=4.949;HaplotypeScore=7.3503;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.589;QD=19.01;ReadPosRankSum=1.697;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1934,213,0 chrXII 809476 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.51;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1750,180,0 chrXII 809477 . A G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.175;QD=18.30;ReadPosRankSum=1.692;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1625,174,0 chrXII 809769 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.48;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2606,270,0 chrXII 809989 . G A 5599.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=20.4787;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.11;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5599,583,0 chrXII 810047 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=224;Dels=0.00;FS=4.752;HaplotypeScore=6.6369;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.685;QD=22.76;ReadPosRankSum=1.716;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5099,541,0 chrXII 810052 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.41;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5086,523,0 chrXII 810176 . A G 6241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.0281;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.591;QD=23.55;ReadPosRankSum=1.692;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:1,260:265:99:6241,670,0 chrXII 810266 . C T 5793.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=31.6658;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.70;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5793,610,0 chrXII 810333 . G C 5526.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.93;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5526,583,0 chrXII 810423 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.74;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4298,465,0 chrXII 810443 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.91;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4491,472,0 chrXII 810615 . C A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=25.10;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3915,414,0 chrXII 810674 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=23.99;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3310,366,0 chrXII 810702 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=25.20;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3528,381,0 chrXII 810737 . A C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=25.49;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3466,375,0 chrXII 810794 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=25.14;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3645,381,0 chrXII 810821 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=0.412;QD=20.24;ReadPosRankSum=1.967;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3231,342,0 chrXII 810830 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=18.29;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2960,309,0 chrXII 810884 . G A 1669 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=11.67;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1702,183,0 chrXII 810890 . C T 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=11.55;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:1546,162,0 chrXII 810891 . C T 1500 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=11.72;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1533,162,0 chrXII 810905 . T C 1344 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.994;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;MQRankSum=-0.475;QD=10.18;ReadPosRankSum=2.338;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:1377,147,0 chrXII 810911 . C T 1451 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=11.08;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1484,156,0 chrXII 810914 . C A 1490 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=11.29;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1523,162,0 chrXII 810923 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=11.06;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:1626,174,0 chrXII 811064 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=3.031;HaplotypeScore=16.7830;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.197;QD=23.55;ReadPosRankSum=2.420;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4003,426,0 chrXII 811113 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=23.57;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3701,399,0 chrXII 811301 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.7604;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.42;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3887,408,0 chrXII 811334 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=171;Dels=0.00;FS=7.237;HaplotypeScore=17.8118;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.499;QD=23.49;ReadPosRankSum=2.390;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,163:171:99:4016,438,0 chrXII 811385 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.047;QD=24.36;ReadPosRankSum=2.207;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4434,472,0 chrXII 811433 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=0.469;QD=23.06;ReadPosRankSum=1.642;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4427,489,0 chrXII 811471 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=22.18;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3749,423,0 chrXII 811472 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=22.86;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,426,0 chrXII 811502 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=22.05;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4211,462,0 chrXII 811640 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=195;Dels=0.00;FS=6.550;HaplotypeScore=14.7392;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;MQRankSum=0.875;QD=17.11;ReadPosRankSum=2.424;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3337,384,0 chrXII 811649 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.97;MQ0=0;MQRankSum=-0.316;QD=16.49;ReadPosRankSum=1.681;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:3380,381,0 chrXII 811661 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=17.17;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3606,411,0 chrXII 811670 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=16.88;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3663,402,0 chrXII 811673 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=16.40;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3674,408,0 chrXII 811757 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.57;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3327,360,0 chrXII 811802 . A T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.95;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4479,466,0 chrXII 811886 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.743;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-1.560;QD=23.55;ReadPosRankSum=1.711;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3792,420,0 chrXII 811914 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.24;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3648,393,0 chrXII 812219 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.104;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.216;QD=23.30;ReadPosRankSum=1.622;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2223,237,0 chrXII 812855 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3144,336,0 chrXII 812990 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=6.115;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.176;QD=25.00;ReadPosRankSum=2.414;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3500,375,0 chrXII 813197 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3137,333,0 chrXII 813236 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.98;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2836,297,0 chrXII 813350 . A T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.44;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4375,463,0 chrXII 813653 . A G 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=207;Dels=0.00;FS=2.961;HaplotypeScore=8.2775;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.053;QD=24.43;ReadPosRankSum=2.413;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,202:207:99:5058,549,0 chrXII 813776 . T A 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.210;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.633;QD=21.38;ReadPosRankSum=1.589;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3133,327,0 chrXII 813812 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6944;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.01;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3291,345,0 chrXII 813944 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.48;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3039,333,0 chrXII 814017 . G T 3078 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.86;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3111,318,0 chrXII 814256 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.75;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4252,456,0 chrXII 814337 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.594;QD=22.19;ReadPosRankSum=1.658;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3140,336,0 chrXII 814364 . A T 2968 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.27;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3001,321,0 chrXII 814367 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.98;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3107,333,0 chrXII 814586 . G A 5457.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=25.03;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5457,559,0 chrXII 814658 . G A 5079.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.85;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5079,529,0 chrXII 815093 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.65;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4178,456,0 chrXII 815108 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.12;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3759,408,0 chrXII 815117 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.86;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3379,351,0 chrXII 815126 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.05;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3061,339,0 chrXII 815222 . T A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.26;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3436,357,0 chrXII 815324 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=24.38;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3511,366,0 chrXII 815357 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.5410;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=19.88;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2915,321,0 chrXII 815365 . C G 2887 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=21.07;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2920,312,0 chrXII 815475 . A G 2545 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.501;QD=16.97;ReadPosRankSum=1.709;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2578,279,0 chrXII 815477 . A T 2695 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=18.21;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2728,276,0 chrXII 815480 . C A 2593 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=16.62;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2626,276,0 chrXII 815496 . G A 1996 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=13.49;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2029,231,0 chrXII 815497 . A C 1931 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=12.96;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1964,228,0 chrXII 815498 . T A 2074 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=14.01;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2107,234,0 chrXII 815526 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=160;Dels=0.00;FS=5.735;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=-0.146;QD=16.47;ReadPosRankSum=2.956;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:2668,282,0 chrXII 815554 . C T 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8711;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=0.823;QD=18.26;ReadPosRankSum=0.823;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2607,273,0 chrXII 815763 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=19.82;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1262,132,0 chrXII 815769 . T G 1176 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=20.28;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1209,132,0 chrXII 815784 . T G 1207 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.18;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1240,135,0 chrXII 815890 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=16.95;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1440,159,0 chrXII 815897 . C T 1195 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=60.4342;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=0;QD=14.57;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1228,132,0 chrXII 815901 . T C 1099 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=63.4142;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=13.91;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1132,126,0 chrXII 815907 . T C 163.06 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=63.4142;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=2.12;SB=-1.619e+02 GT:AD:DP:GQ:PL 1/1:0,13:77:21:196,21,0 chrXII 815940 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=14.01;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1098,117,0 chrXII 815987 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=20.83;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1387,144,0 chrXII 815995 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=20.56;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1534,162,0 chrXII 816028 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=18.35;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1703,192,0 chrXII 816049 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=18.13;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1810,192,0 chrXII 816058 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=16.62;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1678,177,0 chrXII 816068 . A G 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=104;Dels=0.00;FS=2.993;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;MQRankSum=-1.919;QD=15.88;ReadPosRankSum=2.353;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:1685,183,0 chrXII 816162 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.61;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2543,279,0 chrXII 816236 . G A 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.294;QD=23.65;ReadPosRankSum=1.601;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2540,270,0 chrXII 816279 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.82;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1990,207,0 chrXII 816285 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.16;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1930,210,0 chrXII 816323 . C G 2172 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.88;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2205,237,0 chrXII 816399 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.58;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2884,309,0 chrXII 816420 . A C 2779 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.71;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2812,312,0 chrXII 816603 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.58;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4170,433,0 chrXII 816648 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.68;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4002,438,0 chrXII 816720 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.49;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3477,363,0 chrXII 816918 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.126;QD=23.30;ReadPosRankSum=1.682;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3249,351,0 chrXII 816966 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.16;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3682,376,0 chrXII 816978 . T A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.23;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3445,363,0 chrXII 817044 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.8380;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.79;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3471,369,0 chrXII 817116 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.77;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3175,354,0 chrXII 817183 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=6.985;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-0.677;QD=18.65;ReadPosRankSum=2.316;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2439,261,0 chrXII 817186 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.29;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2367,258,0 chrXII 817279 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.299;QD=22.29;ReadPosRankSum=1.709;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3411,366,0 chrXII 817345 . T A 2902 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0400;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.58;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2935,321,0 chrXII 817356 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.97;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3219,336,0 chrXII 817376 . T A 3187 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.11;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3220,333,0 chrXII 817463 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.16;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2787,300,0 chrXII 817525 . G C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.10;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3591,390,0 chrXII 817587 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.61;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2677,288,0 chrXII 817684 . G C 1977 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.97;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2010,228,0 chrXII 817710 . A C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.371;QD=22.90;ReadPosRankSum=1.650;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1957,222,0 chrXII 817755 . T A 1976 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=23.25;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2009,213,0 chrXII 817814 . A T 1360 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=25.19;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1393,144,0 chrXII 817850 . C G 627 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=14.25;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:660,72,0 chrXII 817851 . G A 662 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=15.05;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:695,75,0 chrXII 817863 . G T 364 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=9.33;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:397,42,0 chrXII 817870 . A G 259 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=7.40;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:292,33,0 chrXII 817876 . G A 241 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=6.69;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:274,30,0 chrXII 817907 . T C 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=0.491;QD=12.99;ReadPosRankSum=1.681;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:903,99,0 chrXII 817938 . C T 900 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.00;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:933,99,0 chrXII 817946 . G A 864 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.326;QD=12.52;ReadPosRankSum=-0.025;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:897,99,0 chrXII 817947 . C T 855 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-1.180;QD=12.39;ReadPosRankSum=-0.025;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:888,99,0 chrXII 817948 . A C 840 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.778;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.628;QD=12.17;ReadPosRankSum=-0.126;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:873,99,0 chrXII 817973 . T C 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=0.475;QD=11.56;ReadPosRankSum=-0.372;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:946,108,0 chrXII 817998 . C A 488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=-1.247;QD=9.76;ReadPosRankSum=1.178;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:54:521,54,0 chrXII 818004 . A G 452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;MQRankSum=0.866;QD=10.27;ReadPosRankSum=1.654;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:51:485,51,0 chrXII 818018 . T C 390 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=9.75;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:45:423,45,0 chrXII 818019 . G A 397 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=9.68;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:430,45,0 chrXII 818041 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=17.88;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:784,87,0 chrXII 818046 . C A 896 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=20.36;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:96:929,96,0 chrXII 818092 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=22.67;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1665,177,0 chrXII 818185 . A G 923 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.495;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=5;MQRankSum=0.619;QD=15.13;ReadPosRankSum=0.557;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:83:956,83,0 chrXII 818207 . T A 213 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=8;QD=6.26;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:30:246,30,0 chrXII 818228 . T C 232 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=10;QD=8.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:26:30:265,30,0 chrXII 818235 . C T 265 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=8;QD=8.55;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:33:298,33,0 chrXII 818285 . C T 903 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=4;QD=15.05;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:936,99,0 chrXII 818366 . C T 466 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=14.56;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:499,54,0 chrXII 818384 . G A 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;QD=7.77;SB=-7.188e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:165,18,0 chrXII 818385 . G A 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=0;QD=7.95;SB=-7.288e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:160,18,0 chrXII 818386 . T G 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=0;QD=8.32;SB=-8.288e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:166,18,0 chrXII 818390 . A T 139.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=0;QD=9.28;SB=-5.688e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:172,18,0 chrXII 818447 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=3.64;SB=-2.996e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:83,9,0 chrXII 818452 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=2.53;SB=-2.797e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrXII 818454 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=2.88;SB=-2.897e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:81,9,0 chrXII 818534 . G T 229 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=7.63;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:30:262,30,0 chrXII 818542 . T C 250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=1.083;QD=7.81;ReadPosRankSum=1.625;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:33:283,33,0 chrXII 818562 . T C 368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;MQRankSum=0.312;QD=13.14;ReadPosRankSum=2.275;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:45:401,45,0 chrXII 818582 . A C 503 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=16.23;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:60:536,60,0 chrXII 818588 . C A 545 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=15.14;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,34:36:63:578,63,0 chrXII 818697 . A C 2238 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0898;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=23.56;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2271,246,0 chrXII 818717 . A C 2111 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=22.46;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2144,234,0 chrXII 818735 . C A 1878 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=79.2537;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=19.77;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1911,216,0 chrXII 818791 . A C 1250 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=54.7492;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=16.89;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1283,138,0 chrXII 818807 . T C 727 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=12.75;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:84:760,84,0 chrXII 818808 . C T 772 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=13.31;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:805,90,0 chrXII 818811 . G T 953 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=14.66;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:986,105,0 chrXII 818817 . G A 983 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=15.36;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1016,105,0 chrXII 818826 . T G 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=7.579;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=-1.457;QD=14.73;ReadPosRankSum=1.622;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:961,105,0 chrXII 818837 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=16.32;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1159,123,0 chrXII 818996 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=16.49;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1517,159,0 chrXII 818997 . C A 1384 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=15.38;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1417,159,0 chrXII 819017 . T A 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.228;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;MQRankSum=-0.151;QD=11.56;ReadPosRankSum=0.219;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1224,135,0 chrXII 819018 . A G 1284 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=12.47;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1317,141,0 chrXII 819032 . T G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;DP=119;Dels=0.00;FS=6.606;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=-1.703;QD=11.07;ReadPosRankSum=1.703;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1350,150,0 chrXII 819035 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=11.40;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1390,150,0 chrXII 819079 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.227;QD=17.36;ReadPosRankSum=1.708;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2567,279,0 chrXII 819099 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.58;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3262,339,0 chrXII 819282 . T A 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=172;Dels=0.00;FS=10.739;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.281;QD=22.69;ReadPosRankSum=2.866;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3903,420,0 chrXII 819555 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.68;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2852,306,0 chrXII 819579 . T C 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4842;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.131;QD=19.85;ReadPosRankSum=0.730;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2455,267,0 chrXII 819611 . T G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.462;QD=19.55;ReadPosRankSum=1.703;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2379,258,0 chrXII 819643 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.13;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2548,267,0 chrXII 819681 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.647;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.601;QD=23.02;ReadPosRankSum=1.653;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3094,327,0 chrXII 819713 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.10;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2990,312,0 chrXII 819720 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.54;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2876,312,0 chrXII 819742 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.16;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2654,279,0 chrXII 819834 . C G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.76;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3529,390,0 chrXII 819836 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=4.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.392;QD=21.74;ReadPosRankSum=1.691;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3653,387,0 chrXII 819851 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.55;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3431,378,0 chrXII 819854 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=17.98;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3251,360,0 chrXII 820286 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.84;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2942,309,0 chrXII 820297 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.97;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2629,285,0 chrXII 820477 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=97.5295;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=23.37;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2907,306,0 chrXII 820505 . G T 2933 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.74;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2966,312,0 chrXII 820615 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=25.28;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3994,415,0 chrXII 820636 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=141;Dels=0.00;FS=5.389;HaplotypeScore=8.7222;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.029;QD=21.74;ReadPosRankSum=2.907;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3098,345,0 chrXII 820804 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.9396;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.58;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4998,540,0 chrXII 820873 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=6.928;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.464;QD=24.37;ReadPosRankSum=2.366;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4337,462,0 chrXII 820890 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=171;Dels=0.00;FS=10.335;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.423;QD=23.52;ReadPosRankSum=2.911;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:4022,429,0 chrXII 821080 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.80;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4308,477,0 chrXII 821128 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=6.199;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.654;QD=25.41;ReadPosRankSum=2.393;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4422,471,0 chrXII 821269 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5485;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.371;QD=21.30;ReadPosRankSum=1.633;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3036,330,0 chrXII 821272 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9417;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.356;QD=20.89;ReadPosRankSum=1.658;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2978,321,0 chrXII 821362 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=140;Dels=0.00;FS=6.306;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.799;QD=25.36;ReadPosRankSum=2.397;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3550,381,0 chrXII 821461 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.026;QD=23.00;ReadPosRankSum=2.395;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2103,222,0 chrXII 821518 . A G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.629;QD=22.95;ReadPosRankSum=1.664;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2351,249,0 chrXII 821542 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.86;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2388,249,0 chrXII 821845 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=156;Dels=0.00;FS=7.644;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=24.54;ReadPosRankSum=2.402;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3828,420,0 chrXII 821896 . A C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.603;QD=23.47;ReadPosRankSum=1.655;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3201,342,0 chrXII 822213 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.22;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1973,210,0 chrXII 822304 . T A 2313 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2346,240,0 chrXII 822379 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.46;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3088,333,0 chrXII 822430 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.905;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.346;QD=23.46;ReadPosRankSum=1.708;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3401,366,0 chrXII 822539 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.33;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2996,321,0 chrXII 822608 . A T 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.148;QD=22.12;ReadPosRankSum=1.705;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2886,303,0 chrXII 822648 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.20;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2556,273,0 chrXII 822750 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.06;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2985,312,0 chrXII 822768 . A C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.774;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.950;QD=22.61;ReadPosRankSum=1.704;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2859,312,0 chrXII 822798 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=22.55;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2897,306,0 chrXII 822847 . G A 2159 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=17.99;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2192,237,0 chrXII 822853 . A G 2250 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-1.430;QD=17.86;ReadPosRankSum=1.650;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2283,252,0 chrXII 822857 . T G 2311 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;DP=129;Dels=0.00;FS=8.443;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.999;QD=17.91;ReadPosRankSum=3.349;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2344,252,0 chrXII 822903 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.5636;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.732;QD=19.02;ReadPosRankSum=1.709;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2886,300,0 chrXII 823022 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.36;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2959,309,0 chrXII 823029 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.00;FS=2.973;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.228;QD=19.99;ReadPosRankSum=2.286;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2732,294,0 chrXII 823121 . C G 3162 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=23.25;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3195,351,0 chrXII 823217 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=22.73;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2283,246,0 chrXII 823244 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=25.44;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1610,171,0 chrXII 823320 . T C 966 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=19.71;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:999,108,0 chrXII 823325 . T C 838 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=17.46;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:93:871,93,0 chrXII 823337 . G C 924 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.77;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:957,105,0 chrXII 823338 . G A 991 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=18.35;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1024,111,0 chrXII 823390 . G T 38.97 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=0.78;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:9:71,9,0 chrXII 823394 . C T 993 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=19.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1026,108,0 chrXII 823767 . A G 2376 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.29;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2409,267,0 chrXII 823910 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=19.9118;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.31;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3914,417,0 chrXII 824008 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=191;Dels=0.00;FS=2.854;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.357;QD=22.32;ReadPosRankSum=2.385;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4264,459,0 chrXII 824191 . T C 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=3.179;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.858;QD=21.86;ReadPosRankSum=1.699;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4591,504,0 chrXII 824212 . C T 4797.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.32;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4797,505,0 chrXII 824233 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.6354;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.718;QD=20.90;ReadPosRankSum=-1.685;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4661,481,0 chrXII 824361 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.299;QD=20.77;ReadPosRankSum=1.689;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3364,354,0 chrXII 824406 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.99;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3670,390,0 chrXII 824599 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3210,345,0 chrXII 824977 . G A 5220.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.84;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5220,544,0 chrXII 825429 . A G 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=2.992;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.742;QD=24.18;ReadPosRankSum=2.383;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4474,478,0 chrXII 825457 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9353;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.65;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3850,405,0 chrXII 825694 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5703;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.47;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4209,447,0 chrXII 825724 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.36;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3667,399,0 chrXII 826153 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.44;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4242,445,0 chrXII 826454 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.74;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2383,258,0 chrXII 826674 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2804,297,0 chrXII 827676 . C T 8020.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=19.4889;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.01;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,332:334:99:8020,838,0 chrXII 827781 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.02;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4365,480,0 chrXII 827901 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2516;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.90;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3042,321,0 chrXII 828244 . T C 5514.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.0894;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.41;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5514,583,0 chrXII 828578 . G T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.6556;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4731,499,0 chrXII 828622 . T G 5566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=244;Dels=0.00;FS=14.459;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.182;QD=22.81;ReadPosRankSum=3.389;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:4,240:244:99:5566,615,0 chrXII 828700 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.03;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4561,481,0 chrXII 828702 . A C 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=206;Dels=0.00;FS=3.023;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.533;QD=21.11;ReadPosRankSum=2.402;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4349,468,0 chrXII 828903 . C T 6197.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.9568;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.02;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6197,652,0 chrXII 829035 . C T 5970.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=16.5961;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.87;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:5970,651,0 chrXII 829269 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.5698;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.94;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3163,330,0 chrXII 829427 . G A 160.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=7.62;SB=-1.431e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:21:193,21,0 chrXII 829435 . G A 304 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=9.21;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:39:337,39,0 chrXII 829486 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-1.857;QD=21.55;ReadPosRankSum=2.406;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2468,270,0 chrXII 829513 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=23.83;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3289,345,0 chrXII 829636 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.3747;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=24.55;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5524,598,0 chrXII 829693 . G T 6712.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=23.14;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6712,703,0 chrXII 829708 . C T 5894.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=9.5481;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.43;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5894,639,0 chrXII 829807 . C A 6567.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.45;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6567,679,0 chrXII 829810 . A C 6357.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.31;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6357,664,0 chrXII 829917 . G C 5079.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.9944;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.07;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5079,561,0 chrXII 830371 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.32;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4621,487,0 chrXII 830507 . C A 3183 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=22.10;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3216,342,0 chrXII 830508 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=21.96;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3261,345,0 chrXII 830520 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=142;Dels=0.00;FS=5.947;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-1.135;QD=19.99;ReadPosRankSum=2.922;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2871,321,0 chrXII 830532 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=21.08;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3110,327,0 chrXII 830647 . G T 2850 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=20.50;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2883,309,0 chrXII 830675 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=14.78;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1955,222,0 chrXII 830678 . G T 1903 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=14.10;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1936,207,0 chrXII 830689 . T A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=128;Dels=0.00;FS=2.183;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;MQRankSum=-2.740;QD=12.95;ReadPosRankSum=1.701;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:1691,192,0 chrXII 830721 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=16.22;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2207,234,0 chrXII 830731 . A G 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DP=136;Dels=0.00;FS=2.157;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=-0.619;QD=14.12;ReadPosRankSum=2.232;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:1954,192,0 chrXII 830791 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0421;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=23.88;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3439,349,0 chrXII 830821 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=23.33;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3159,330,0 chrXII 830945 . C T 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=1.708;QD=20.78;ReadPosRankSum=1.344;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3005,315,0 chrXII 830954 . A C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=147;Dels=0.00;FS=6.111;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=1.952;QD=19.54;ReadPosRankSum=2.924;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:2906,318,0 chrXII 830981 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.273;QD=20.10;ReadPosRankSum=1.692;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3458,369,0 chrXII 831241 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.27;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3277,345,0 chrXII 831427 . C A 3127 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3160,330,0 chrXII 831670 . A T 2999 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.20;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3032,315,0 chrXII 831733 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.29;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2362,258,0 chrXII 831772 . C A 3049 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.59;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3082,313,0 chrXII 831793 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=129;Dels=0.00;FS=2.144;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.071;QD=20.91;ReadPosRankSum=2.473;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2731,294,0 chrXII 831805 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.68;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2709,282,0 chrXII 832054 . A C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.390;QD=23.00;ReadPosRankSum=1.667;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3726,399,0 chrXII 832281 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3067,324,0 chrXII 832834 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.14;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3495,369,0 chrXII 833260 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=19.3600;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.96;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5138,550,0 chrXII 833326 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=20.5065;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.76;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4351,460,0 chrXII 833446 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.022;QD=21.53;ReadPosRankSum=1.688;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3445,372,0 chrXII 833500 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.563;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.710;QD=23.22;ReadPosRankSum=1.710;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3715,411,0 chrXII 833647 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=9.354;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=2.244;QD=21.99;ReadPosRankSum=2.862;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2760,291,0 chrXII 833760 . T G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.771;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.045;QD=16.70;ReadPosRankSum=1.705;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2154,237,0 chrXII 833774 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.17;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2640,279,0 chrXII 833859 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.680;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-1.343;QD=20.32;ReadPosRankSum=1.697;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2024,219,0 chrXII 833865 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=20.25;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1916,204,0 chrXII 833890 . C A 1896 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=19.35;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1929,198,0 chrXII 833930 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=18.99;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1761,195,0 chrXII 833983 . A T 2365 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.89;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2398,252,0 chrXII 834031 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.23;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2170,228,0 chrXII 834053 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-0.514;QD=23.13;ReadPosRankSum=1.694;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2138,237,0 chrXII 834075 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=23.09;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1903,207,0 chrXII 834108 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=16.73;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1438,165,0 chrXII 834111 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=15.95;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1405,159,0 chrXII 834217 . A C 2349 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.59;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2382,255,0 chrXII 834281 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.60;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2927,321,0 chrXII 834286 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.05;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3099,327,0 chrXII 834387 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3648;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.275;QD=22.75;ReadPosRankSum=1.684;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3276,360,0 chrXII 834416 . G T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.88;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3294,342,0 chrXII 834552 . A G 5931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=4.132;HaplotypeScore=19.9038;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.225;QD=24.01;ReadPosRankSum=1.690;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5931,631,0 chrXII 834726 . C G 7826.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=20.4743;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.93;SB=-3.877e+03 GT:AD:DP:GQ:PL 1/1:0,322:327:99:7826,856,0 chrXII 835059 . G A 5158.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.22;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5158,532,0 chrXII 835110 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=198;Dels=0.00;FS=17.639;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.862;QD=24.20;ReadPosRankSum=3.763;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:5,193:198:99:4792,519,0 chrXII 835257 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.58;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3607,376,0 chrXII 835277 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=166;Dels=0.00;FS=6.316;HaplotypeScore=10.5396;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.916;QD=20.89;ReadPosRankSum=2.390;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3468,378,0 chrXII 835393 . A C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=184;Dels=0.00;FS=14.437;HaplotypeScore=3.3940;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=0.289;QD=21.74;ReadPosRankSum=3.412;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4001,432,0 chrXII 835400 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.448;DP=170;Dels=0.00;FS=3.554;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.489;QD=21.49;ReadPosRankSum=0.041;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3653,360,0 chrXII 835412 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.33;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3285,345,0 chrXII 835461 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.026;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.250;QD=20.30;ReadPosRankSum=2.421;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3492,375,0 chrXII 835495 . C T 4507.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.23;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4507,472,0 chrXII 835689 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3141;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.74;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3672,396,0 chrXII 835692 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.55;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3864,403,0 chrXII 835791 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=10.258;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.587;QD=20.91;ReadPosRankSum=2.958;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3513,381,0 chrXII 835800 . G T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.64;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3406,357,0 chrXII 837118 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.6344;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.232;QD=23.56;ReadPosRankSum=1.715;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4760,510,0 chrXII 837460 . A G 926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.465;QD=22.59;ReadPosRankSum=1.648;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,40:41:99:959,102,0 chrXII 837471 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=23.47;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:96:925,96,0 chrXII 837482 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.59;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:630,66,0 chrXII 837543 . G A 441 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=11.61;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,34:38:54:474,54,0 chrXII 837595 . C T 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.364;QD=25.13;ReadPosRankSum=1.106;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2395,258,0 chrXII 837919 . A G 726 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:81:759,81,0 chrXII 839568 . A G 2558 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.98;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2591,276,0 chrXII 839573 . C G 2270 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.02;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2303,261,0 chrXII 839654 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.13;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3862,408,0 chrXII 839722 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.85;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3793,405,0 chrXII 839783 . C G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.67;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3977,426,0 chrXII 839881 . G A 77.51 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=110.9144;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=0.66;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,8:118:12:110,12,0 chrXII 840068 . A G 2958 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.560;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.085;QD=20.69;ReadPosRankSum=1.659;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2991,336,0 chrXII 840073 . T C 2952 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=145;Dels=0.00;FS=5.862;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.056;QD=20.36;ReadPosRankSum=2.909;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2985,321,0 chrXII 840076 . A T 3074 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.813;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-0.450;QD=19.96;ReadPosRankSum=1.687;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3107,324,0 chrXII 840079 . C T 3116 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.85;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3149,336,0 chrXII 840217 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=155;Dels=0.00;FS=3.030;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.313;QD=23.03;ReadPosRankSum=2.417;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3570,384,0 chrXII 840287 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.72;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3732,396,0 chrXII 840314 . T G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=148;Dels=0.00;FS=3.193;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.068;QD=20.75;ReadPosRankSum=1.685;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3104,330,0 chrXII 840577 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.82;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3311,360,0 chrXII 840605 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.20;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3540,375,0 chrXII 840682 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.95;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3994,426,0 chrXII 840839 . T C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.595;QD=17.57;ReadPosRankSum=1.706;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2387,264,0 chrXII 841073 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.73;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3338,372,0 chrXII 841354 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.6527;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.44;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4351,454,0 chrXII 841667 . T A 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=7.383;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.873;QD=22.32;ReadPosRankSum=2.315;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2890,315,0 chrXII 842401 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.05;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3090,316,0 chrXII 842770 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3375,369,0 chrXII 842955 . C G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4102,435,0 chrXII 843076 . G A 5817.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.51;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5817,607,0 chrXII 843392 . C G 4989.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.47;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4989,546,0 chrXII 843400 . T C 5229.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.06;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5229,582,0 chrXII 843685 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.217;QD=23.12;ReadPosRankSum=1.709;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3445,381,0 chrXII 844038 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.82;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2788,291,0 chrXII 844191 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=25.15;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2422,255,0 chrXII 844293 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=2.608;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.978;QD=23.14;ReadPosRankSum=2.372;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2972,327,0 chrXII 844419 . A G 4545.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.7145;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.07;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4545,492,0 chrXII 844425 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.8968;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.94;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4634,478,0 chrXII 844641 . T C 5149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=229;Dels=0.00;FS=11.156;HaplotypeScore=18.8696;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.447;QD=22.48;ReadPosRankSum=2.916;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:5149,553,0 chrXII 845436 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.4058;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.04;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3895,423,0 chrXII 846071 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.61;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2205,231,0 chrXII 846079 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.95;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2144,222,0 chrXII 846312 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=159;Dels=0.00;FS=5.434;HaplotypeScore=9.6150;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.779;QD=24.81;ReadPosRankSum=2.918;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3945,420,0 chrXII 846354 . C A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4043,435,0 chrXII 846636 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.090;QD=21.56;ReadPosRankSum=1.665;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3320,366,0 chrXII 846812 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3257,345,0 chrXII 847703 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.01;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3785,414,0 chrXII 847957 . C G 2622 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.06;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2655,279,0 chrXII 847972 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=116;Dels=0.00;FS=2.963;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.745;QD=22.03;ReadPosRankSum=2.407;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2588,273,0 chrXII 848108 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.7288;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.65;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3335,348,0 chrXII 848195 . A T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.99;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3679,402,0 chrXII 848443 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.57;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3808,396,0 chrXII 848719 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4956,514,0 chrXII 848842 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4241,453,0 chrXII 848908 . C G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3544,387,0 chrXII 849017 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.498;QD=23.23;ReadPosRankSum=1.709;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3485,381,0 chrXII 849160 . C A 2869 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.24;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2902,309,0 chrXII 849445 . T G 2805 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=25.73;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2838,303,0 chrXII 849491 . T C 2560 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.4907;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.65;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2593,273,0 chrXII 849515 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.85;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2611,276,0 chrXII 849605 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.44;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2053,216,0 chrXII 849610 . C G 1894 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.15;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1927,210,0 chrXII 849651 . T C 274.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720;DP=93;Dels=0.00;FS=17.268;HaplotypeScore=69.0230;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.119;QD=2.95;ReadPosRankSum=-4.958;SB=-4.263e+00 GT:AD:DP:GQ:PL 1/1:73,19:93:15:307,15,0 chrXII 849654 . T C 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=89;Dels=0.00;FS=10.448;HaplotypeScore=68.2344;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=-0.301;QD=0.89;ReadPosRankSum=4.916;SB=-8.480e+02 GT:AD:DP:GQ:PL 0/1:15,74:89:99:109,0,234 chrXII 850042 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4045,424,0 chrXII 850147 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=141;Dels=0.00;FS=2.976;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.822;QD=24.08;ReadPosRankSum=2.379;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3395,366,0 chrXII 850372 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3906,414,0 chrXII 850558 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.04;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4183,439,0 chrXII 850897 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4191,456,0 chrXII 850957 . G A 5161.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=20.3507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5161,538,0 chrXII 851089 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.629;QD=23.40;ReadPosRankSum=1.713;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4188,450,0 chrXII 851170 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.439;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.120;QD=24.17;ReadPosRankSum=1.713;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4447,475,0 chrXII 851231 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.66;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3489,366,0 chrXII 851512 . T A 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.437;QD=26.51;ReadPosRankSum=1.697;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2657,270,0 chrXII 851587 . C A 2543 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2576,273,0 chrXII 851760 . C G 3801.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.52;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3801,405,0 chrXII 851969 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.121;QD=22.46;ReadPosRankSum=1.674;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2728,291,0 chrXII 852007 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.94;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2475,267,0 chrXII 852274 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.87;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2258,237,0 chrXII 852843 . A C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=136;Dels=0.00;FS=2.948;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.172;QD=23.21;ReadPosRankSum=2.413;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3190,345,0 chrXII 853103 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.054;QD=23.85;ReadPosRankSum=-0.690;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3434,372,0 chrXII 854278 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.229;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.254;QD=24.45;ReadPosRankSum=1.684;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3521,375,0 chrXII 854473 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3442,357,0 chrXII 854761 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3324,360,0 chrXII 855018 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.292;QD=21.48;ReadPosRankSum=2.393;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3738,414,0 chrXII 855075 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.90;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3755,396,0 chrXII 855144 . T G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5771;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.446;QD=20.87;ReadPosRankSum=1.691;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3527,378,0 chrXII 855154 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.314;QD=20.73;ReadPosRankSum=2.918;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3317,357,0 chrXII 855358 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=18.6937;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.60;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3413,366,0 chrXII 855391 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9670;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.21;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3031,321,0 chrXII 855421 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.425;QD=23.16;ReadPosRankSum=2.341;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3183,348,0 chrXII 855464 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=148;Dels=0.00;FS=3.071;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.289;QD=22.66;ReadPosRankSum=1.708;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:3354,360,0 chrXII 855542 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.94;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2373,252,0 chrXII 855577 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2350,243,0 chrXII 855661 . A C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.812;QD=22.07;ReadPosRankSum=1.671;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2571,270,0 chrXII 855699 . A C 2542 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.54;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2575,282,0 chrXII 855718 . G C 2343 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.75;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2376,261,0 chrXII 855772 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.34;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2082,222,0 chrXII 855810 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2605,276,0 chrXII 855913 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.54;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2782,291,0 chrXII 855990 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.91;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3276,360,0 chrXII 856042 . T A 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=3.039;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.230;QD=25.45;ReadPosRankSum=2.410;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3163,330,0 chrXII 856365 . T C 45.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;DP=160;Dels=0.00;FS=15.351;HaplotypeScore=140.1437;MLEAC=1;MLEAF=0.500;MQ=54.01;MQ0=0;MQRankSum=1.750;QD=0.28;ReadPosRankSum=-4.537;SB=-2.342e+01 GT:AD:DP:GQ:PL 0/1:152,8:160:7:75,0,7 chrXII 856379 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.61;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3306,342,0 chrXII 857000 . T A 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.859;QD=23.75;ReadPosRankSum=1.674;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2859,300,0 chrXII 857019 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=24.14;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3050,327,0 chrXII 857426 . A T 2847 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.19;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2880,306,0 chrXII 857477 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.28;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2384,255,0 chrXII 857630 . G C 2511 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2544,270,0 chrXII 857745 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.19;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2573,261,0 chrXII 857849 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.052;QD=22.86;ReadPosRankSum=1.627;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2319,246,0 chrXII 858373 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.54;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3509,369,0 chrXII 858605 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.960;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.355;QD=22.38;ReadPosRankSum=2.343;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4117,456,0 chrXII 858635 . A G 4476.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3314;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.19;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4476,489,0 chrXII 858802 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.09;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3695,405,0 chrXII 858994 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.8457;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.53;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3410,363,0 chrXII 859243 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=150;Dels=0.00;FS=10.721;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.183;QD=23.93;ReadPosRankSum=2.953;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3590,393,0 chrXII 859351 . G T 2647 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.22;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2680,282,0 chrXII 859355 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.33;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2601,270,0 chrXII 859630 . A G 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=5.880;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.313;QD=26.58;ReadPosRankSum=1.713;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4864,508,0 chrXII 860031 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.32;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2946,321,0 chrXII 860038 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.57;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3004,315,0 chrXII 860133 . A G 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=227;Dels=0.00;FS=10.697;HaplotypeScore=20.7963;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.951;QD=21.04;ReadPosRankSum=2.925;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4775,537,0 chrXII 860211 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.979;HaplotypeScore=8.4329;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.109;QD=23.36;ReadPosRankSum=1.712;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4111,436,0 chrXII 860959 . G A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.6475;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.01;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4610,487,0 chrXII 861302 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=134;Dels=0.00;FS=5.276;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.204;QD=22.94;ReadPosRankSum=3.313;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:4,129:134:99:3107,333,0 chrXII 861561 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=22.06;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1776,198,0 chrXII 861675 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2186,225,0 chrXII 861841 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.598;QD=26.04;ReadPosRankSum=1.710;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4063,438,0 chrXII 862015 . G A 5076.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5076,523,0 chrXII 862059 . C A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3996,421,0 chrXII 862237 . C G 3056 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.81;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3089,339,0 chrXII 862412 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.675;QD=23.48;ReadPosRankSum=1.646;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2874,306,0 chrXII 862519 . G C 2611 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.32;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2644,288,0 chrXII 863688 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=70.7994;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.23;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2909,303,0 chrXII 863920 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.15;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3695,393,0 chrXII 864063 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.60;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:4083,430,0 chrXII 864159 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.01;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3751,394,0 chrXII 864291 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=181;Dels=0.00;FS=13.856;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.623;QD=22.78;ReadPosRankSum=2.537;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:4,175:181:99:4123,456,0 chrXII 864558 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.3865;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.740;QD=22.44;ReadPosRankSum=1.715;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4510,492,0 chrXII 864606 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4597,495,0 chrXII 864723 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.32;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3291,348,0 chrXII 864768 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.21;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2865,312,0 chrXII 864999 . G T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.5925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4591,487,0 chrXII 865086 . T C 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=210;Dels=0.00;FS=3.017;HaplotypeScore=16.0762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.181;QD=23.76;ReadPosRankSum=2.426;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4990,537,0 chrXII 865455 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.425;QD=24.33;ReadPosRankSum=1.691;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4136,441,0 chrXII 865557 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3796,399,0 chrXII 865736 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.169;QD=23.42;ReadPosRankSum=1.711;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3841,411,0 chrXII 865827 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.08;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2925,318,0 chrXII 865848 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.05;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3001,333,0 chrXII 866082 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.940;QD=24.14;ReadPosRankSum=1.699;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2568,282,0 chrXII 866118 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.98;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2071,228,0 chrXII 866256 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0585;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.11;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2460,255,0 chrXII 866286 . C A 2778 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.59;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2811,309,0 chrXII 866559 . T C 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=222;Dels=0.00;FS=3.492;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.542;QD=23.59;ReadPosRankSum=1.700;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:5238,567,0 chrXII 866961 . G A 214.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:27:247,27,0 chrXII 867118 . A T 406 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.45;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:439,48,0 chrXII 868519 . T A 509 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.21;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:542,60,0 chrXII 868618 . G A 331 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-8.700e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:364,39,0 chrXII 868667 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1045,108,0 chrXII 868737 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1152,126,0 chrXII 869190 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=4.222;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.445;QD=24.37;ReadPosRankSum=1.696;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4752,508,0 chrXII 869308 . T A 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.668;QD=24.77;ReadPosRankSum=1.668;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4038,418,0 chrXII 869349 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.86;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4176,453,0 chrXII 869370 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.44;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4439,483,0 chrXII 869743 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2030,216,0 chrXII 870167 . G C 2151 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2184,237,0 chrXII 870213 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2658,285,0 chrXII 870633 . A G 4649.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.13;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4649,493,0 chrXII 870645 . T A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.75;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4046,444,0 chrXII 870845 . C T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=25.1131;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.81;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,219:226:99:5381,559,0 chrXII 870993 . G A 6394.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=25.5746;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.59;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6394,670,0 chrXII 871063 . C T 7760.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=17.8114;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.73;SB=-3.935e+03 GT:AD:DP:GQ:PL 1/1:0,326:327:99:7760,805,0 chrXII 871137 . A G 7303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=352;Dels=0.00;FS=6.656;HaplotypeScore=7.9333;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.174;QD=20.75;ReadPosRankSum=2.414;SB=-4.392e+03 GT:AD:DP:GQ:PL 1/1:2,346:352:99:7303,801,0 chrXII 871152 . C T 7377.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=16.8199;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.16;SB=-4.337e+03 GT:AD:DP:GQ:PL 1/1:0,363:366:99:7377,793,0 chrXII 871484 . C T 6616.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=13.1700;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.62;SB=-3.932e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:6616,688,0 chrXII 871504 . A G 5888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=295;Dels=0.00;FS=11.968;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.658;QD=19.96;ReadPosRankSum=3.793;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:5,288:295:99:5888,645,0 chrXII 871646 . G T 7115.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.3120;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.79;SB=-3.920e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:7115,742,0 chrXII 871825 . A C 6105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=18.4981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.044;QD=19.76;ReadPosRankSum=-0.012;SB=-4.010e+03 GT:AD:DP:GQ:PL 1/1:2,307:309:99:6105,626,0 chrXII 872065 . C T 6622.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=23.2713;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.07;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,295:300:99:6622,709,0 chrXII 872180 . T C 5736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=253;Dels=0.00;FS=5.932;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.655;QD=22.67;ReadPosRankSum=2.876;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:3,247:253:99:5736,616,0 chrXII 872401 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.0697;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.519;QD=22.94;ReadPosRankSum=1.713;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4061,441,0 chrXII 872452 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.8849;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.58;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3655,384,0 chrXII 872707 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3478,372,0 chrXII 873155 . C A 3080 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.84;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3113,327,0 chrXII 873300 . T C 3157 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.55;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3190,336,0 chrXII 873609 . G A 497 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.75;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:530,57,0 chrXII 873610 . G A 449 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.04;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:51:482,51,0 chrXII 873725 . G C 1081 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1114,123,0 chrXII 873872 . C G 3155 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.46;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3188,354,0 chrXII 874247 . A G 6228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=264;Dels=0.00;FS=10.504;HaplotypeScore=12.9496;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.576;QD=23.59;ReadPosRankSum=2.950;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:3,260:264:99:6228,658,0 chrXII 874259 . T A 6029.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.4720;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=24.21;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6029,628,0 chrXII 874343 . T C 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=221;Dels=0.00;FS=3.448;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.229;QD=22.39;ReadPosRankSum=1.716;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4948,526,0 chrXII 874373 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=18.03;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4526,483,0 chrXII 874379 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=6.7708;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;MQRankSum=-1.732;QD=16.47;ReadPosRankSum=0.171;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:4167,444,0 chrXII 874397 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=15.45;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:3971,418,0 chrXII 874427 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=241;Dels=0.00;FS=7.630;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.915;QD=11.19;ReadPosRankSum=2.388;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:2729,306,0 chrXII 874433 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=11.78;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:3037,321,0 chrXII 874454 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=13.03;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:2847,312,0 chrXII 874812 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.3664;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.34;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4341,460,0 chrXII 875066 . G C 2817 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2850,315,0 chrXII 875363 . T C 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.181;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.033;QD=21.10;ReadPosRankSum=1.699;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2270,243,0 chrXII 875368 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.99;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2195,234,0 chrXII 875555 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.36;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1870,207,0 chrXII 875602 . T C 1994 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=23.74;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2027,219,0 chrXII 876120 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.25;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4608,484,0 chrXII 876714 . A G 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=246;Dels=0.00;FS=3.021;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.926;QD=22.21;ReadPosRankSum=2.409;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:5464,574,0 chrXII 877560 . T G 3031 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=231.6290;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=20.34;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3064,333,0 chrXII 877593 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=14.93;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2033,222,0 chrXII 877606 . C A 1956 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=12.95;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1989,213,0 chrXII 877607 . T A 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=6.109;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;MQRankSum=-2.120;QD=13.21;ReadPosRankSum=2.417;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2001,213,0 chrXII 877625 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=12.90;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:2678,294,0 chrXII 877647 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=17.21;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3906,409,0 chrXII 877736 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=18.25;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:3722,385,0 chrXII 877739 . T A 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.3297;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-1.118;QD=17.96;ReadPosRankSum=1.715;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3646,379,0 chrXII 877782 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=237.3232;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=14.16;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:3697,402,0 chrXII 877787 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=224.0551;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=14.37;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:3980,418,0 chrXII 877944 . C T 8964.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=23.22;SB=-5.139e+03 GT:AD:DP:GQ:PL 1/1:0,383:386:99:8964,925,0 chrXII 877967 . A T 8082.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=14.7983;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.455;QD=21.44;ReadPosRankSum=1.714;SB=-4.911e+03 GT:AD:DP:GQ:PL 1/1:1,376:377:99:8082,850,0 chrXII 878009 . T C 5781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=316;Dels=0.00;FS=6.865;HaplotypeScore=23.7405;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.235;QD=18.29;ReadPosRankSum=2.426;SB=-3.611e+03 GT:AD:DP:GQ:PL 1/1:2,307:316:99:5781,630,0 chrXII 878188 . T C 6482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=274;Dels=0.00;FS=3.558;HaplotypeScore=16.7609;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.808;QD=23.66;ReadPosRankSum=1.001;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:1,269:274:99:6482,703,0 chrXII 878238 . T C 6598.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.38;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6598,715,0 chrXII 878842 . A G 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=206;Dels=0.00;FS=2.869;HaplotypeScore=11.1191;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.387;QD=24.18;ReadPosRankSum=2.080;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4982,529,0 chrXII 878875 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4309,451,0 chrXII 879385 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=196;Dels=0.00;FS=2.565;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.769;QD=19.39;ReadPosRankSum=2.903;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:3800,420,0 chrXII 879756 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3635,384,0 chrXII 880035 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.9095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.69;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4208,436,0 chrXII 880251 . C A 3170 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.13;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3203,331,0 chrXII 880276 . G C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.37;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3355,354,0 chrXII 880319 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=195;Dels=0.00;FS=4.222;HaplotypeScore=13.8044;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.709;QD=21.44;ReadPosRankSum=0.835;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4180,442,0 chrXII 880937 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3459,360,0 chrXII 881541 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.81;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1756,186,0 chrXII 881580 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.67;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2027,216,0 chrXII 881641 . C T 1763 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.90;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1796,189,0 chrXII 881642 . C T 1759 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.14;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1792,186,0 chrXII 881645 . C T 1684 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.16;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1717,186,0 chrXII 881789 . C A 1059 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.37;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1092,114,0 chrXII 881897 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:892,96,0 chrXII 881962 . A G 50.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrXII 882085 . A G 1095 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1128,120,0 chrXII 882430 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=3.096;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.464;QD=22.34;ReadPosRankSum=1.642;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3463,375,0 chrXII 882523 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.244;QD=23.47;ReadPosRankSum=1.665;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3661,402,0 chrXII 882901 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.78;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3742,393,0 chrXII 882976 . T C 3120 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3153,336,0 chrXII 883249 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4210,442,0 chrXII 883429 . T C 4835.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.91;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4835,514,0 chrXII 883499 . A G 5488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.6521;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.189;QD=22.13;ReadPosRankSum=1.676;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5488,586,0 chrXII 884518 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.724;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.892;QD=21.51;ReadPosRankSum=1.669;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3614,387,0 chrXII 884621 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.75;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3959,438,0 chrXII 884656 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.64;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3617,381,0 chrXII 884838 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.770;QD=21.52;ReadPosRankSum=1.650;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2744,291,0 chrXII 884976 . T C 2282 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.29;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2315,255,0 chrXII 885037 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.32;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1922,219,0 chrXII 885068 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=81.3183;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.07;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1866,201,0 chrXII 885146 . G T 2698 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=13.3641;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.46;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2731,288,0 chrXII 885190 . A T 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=5.588;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.115;QD=23.58;ReadPosRankSum=1.699;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2509,267,0 chrXII 885216 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.550;QD=23.14;ReadPosRankSum=2.330;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2879,312,0 chrXII 885248 . T A 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.757;DP=148;Dels=0.00;FS=4.884;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.637;QD=22.45;ReadPosRankSum=3.778;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:5,143:148:99:3323,345,0 chrXII 885268 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.490;QD=21.05;ReadPosRankSum=2.391;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3536,378,0 chrXII 885303 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4090;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.06;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4058,429,0 chrXII 885401 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=158;Dels=0.00;FS=2.928;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.745;QD=23.57;ReadPosRankSum=2.356;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3724,390,0 chrXII 885458 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8081;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=25.62;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4766,496,0 chrXII 885490 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.64;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4043,429,0 chrXII 885524 . A C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=154;Dels=0.00;FS=5.887;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.216;QD=19.64;ReadPosRankSum=2.955;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3057,336,0 chrXII 885536 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.16;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3038,318,0 chrXII 885677 . T G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.38;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3507,390,0 chrXII 885745 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=4.346;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.146;QD=23.55;ReadPosRankSum=1.707;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3259,342,0 chrXII 886357 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8676;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.41;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3490,372,0 chrXII 886589 . T A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.88;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3732,388,0 chrXII 886649 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.94;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3192,339,0 chrXII 886772 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=130;Dels=0.00;FS=3.042;HaplotypeScore=14.2341;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.001;QD=23.49;ReadPosRankSum=2.412;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3087,330,0 chrXII 886838 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.60;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3174,333,0 chrXII 886844 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.69;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3210,333,0 chrXII 886881 . G C 3129 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.19;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3162,336,0 chrXII 886902 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.48;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3167,333,0 chrXII 887067 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.949;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.337;QD=23.17;ReadPosRankSum=1.708;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3359,369,0 chrXII 887300 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.68;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3072,324,0 chrXII 887306 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.27;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3104,321,0 chrXII 887502 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=135;Dels=0.00;FS=2.792;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.015;QD=23.17;ReadPosRankSum=2.375;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:3161,339,0 chrXII 887672 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.703;QD=20.26;ReadPosRankSum=1.629;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2079,231,0 chrXII 888137 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3168,342,0 chrXII 888182 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=134;Dels=0.00;FS=6.120;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.008;QD=24.57;ReadPosRankSum=2.947;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:3292,351,0 chrXII 888260 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3494,363,0 chrXII 888362 . G C 4577.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.86;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4577,492,0 chrXII 888653 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.49;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1105,117,0 chrXII 888676 . T A 1059 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=14.71;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1092,120,0 chrXII 888705 . A G 654 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=68;Dels=0.00;FS=8.457;HaplotypeScore=1.8874;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;MQRankSum=-2.015;QD=9.62;ReadPosRankSum=1.797;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:75:687,75,0 chrXII 888713 . A G 672 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-1.519;QD=10.34;ReadPosRankSum=1.626;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:75:705,75,0 chrXII 888715 . T A 640 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=10.00;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:75:673,75,0 chrXII 888722 . T A 571 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=2.757;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;MQRankSum=-2.039;QD=8.65;ReadPosRankSum=2.113;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:66:604,66,0 chrXII 888738 . A T 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=0.990;QD=12.93;ReadPosRankSum=1.633;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:938,102,0 chrXII 888875 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.73;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1692,183,0 chrXII 889106 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.16;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3382,357,0 chrXII 889289 . C A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.33;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4793,502,0 chrXII 889361 . C T 5309.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.69;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5309,550,0 chrXII 889388 . T C 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=4.290;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.732;QD=21.72;ReadPosRankSum=1.718;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5213,547,0 chrXII 889415 . T C 4914.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.82;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4914,520,0 chrXII 889427 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.21;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4506,472,0 chrXII 889750 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7928;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.74;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4181,442,0 chrXII 890158 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.97;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2789,297,0 chrXII 890224 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.07;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2940,312,0 chrXII 890351 . G C 2279 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.50;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2312,258,0 chrXII 890403 . G C 2956 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.84;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2989,327,0 chrXII 890548 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.63;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2636,288,0 chrXII 890591 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.84;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4098,444,0 chrXII 891003 . T C 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=197;Dels=0.00;FS=4.699;HaplotypeScore=12.2652;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.082;QD=23.27;ReadPosRankSum=2.997;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:4584,484,0 chrXII 891197 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=181;Dels=0.00;FS=2.183;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.872;QD=23.34;ReadPosRankSum=2.661;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4225,456,0 chrXII 891299 . T G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0553;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.72;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3749,393,0 chrXII 891320 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.58;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3329,363,0 chrXII 891323 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.68;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3405,352,0 chrXII 891452 . C T 5026.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.01;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5026,529,0 chrXII 891875 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=193;Dels=0.00;FS=8.109;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.704;QD=20.14;ReadPosRankSum=2.372;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:3887,429,0 chrXII 891881 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.29;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4057,429,0 chrXII 892172 . T A 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.8718;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.299;QD=23.79;ReadPosRankSum=2.360;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4592,507,0 chrXII 892383 . A T 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=233;Dels=0.00;FS=3.011;HaplotypeScore=15.2531;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=2.018;QD=23.32;ReadPosRankSum=2.418;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5433,583,0 chrXII 892436 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.1384;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.26;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4273,451,0 chrXII 892496 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=2.633;HaplotypeScore=5.7745;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.058;QD=20.44;ReadPosRankSum=2.398;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3924,429,0 chrXII 892508 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=198;Dels=0.00;FS=2.557;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.416;QD=20.09;ReadPosRankSum=2.904;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3978,432,0 chrXII 893140 . T C 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.2326;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.039;QD=24.48;ReadPosRankSum=1.683;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5189,556,0 chrXII 893372 . C T 5817.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.8848;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.37;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5817,604,0 chrXII 893382 . G A 5489.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.64;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,261:266:99:5489,559,0 chrXII 893396 . G A 5320.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.42;SB=-3.454e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5320,559,0 chrXII 893440 . T A 5020.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=17.93;SB=-3.832e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:5020,526,0 chrXII 893453 . A T 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.974;DP=272;Dels=0.00;FS=6.063;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-0.834;QD=18.40;ReadPosRankSum=2.959;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:5004,520,0 chrXII 893464 . T A 5161.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=7.8499;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.77;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5161,538,0 chrXII 893651 . T C 6371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=262;Dels=0.00;FS=6.061;HaplotypeScore=17.9988;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-2.550;QD=24.32;ReadPosRankSum=2.958;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:6371,679,0 chrXII 893936 . A G 5765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=21.0491;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.306;QD=23.43;ReadPosRankSum=1.718;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5765,604,0 chrXII 894104 . T A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3712,388,0 chrXII 894452 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2500,264,0 chrXII 894680 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.708;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.883;QD=20.97;ReadPosRankSum=1.598;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3271,366,0 chrXII 894791 . C G 3072 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3105,336,0 chrXII 894953 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3323,369,0 chrXII 895061 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3990,423,0 chrXII 895451 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.58;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3036,330,0 chrXII 896189 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.71;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3520,381,0 chrXII 896197 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.673;QD=20.46;ReadPosRankSum=1.713;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3621,387,0 chrXII 897689 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=4.155;HaplotypeScore=14.1041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.204;QD=25.06;ReadPosRankSum=1.709;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3834,408,0 chrXII 897975 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=3.832;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.060;QD=24.97;ReadPosRankSum=1.712;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4395,463,0 chrXII 898044 . G A 4234.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.35;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4234,459,0 chrXII 898095 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.69;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4004,432,0 chrXII 898119 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.16;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4253,448,0 chrXII 898209 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.9050;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.36;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2704,291,0 chrXII 898212 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0060;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.744;QD=20.31;ReadPosRankSum=3.234;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:4,129:134:99:2755,294,0 chrXII 898520 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4181,456,0 chrXII 899119 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=103;Dels=0.00;FS=5.278;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.710;QD=20.31;ReadPosRankSum=2.871;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:3,98:103:99:2125,222,0 chrXII 899128 . A C 2045 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.05;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2078,225,0 chrXII 899154 . T C 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.245;HaplotypeScore=72.0691;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.586;QD=20.08;ReadPosRankSum=1.696;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1961,210,0 chrXII 899303 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.66;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2499,270,0 chrXII 899462 . A C 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=164;Dels=0.00;FS=11.780;HaplotypeScore=13.2252;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.847;QD=24.34;ReadPosRankSum=2.884;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3992,438,0 chrXII 899557 . C A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.13;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3571,375,0 chrXII 899580 . C G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.87;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3545,378,0 chrXII 899679 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2834,294,0 chrXII 899955 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.406;QD=24.20;ReadPosRankSum=1.678;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3130,336,0 chrXII 899979 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.08;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3235,354,0 chrXII 900280 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=10.522;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.207;QD=22.41;ReadPosRankSum=2.388;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3630,408,0 chrXII 900312 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=155;Dels=0.00;FS=2.585;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.890;QD=22.81;ReadPosRankSum=2.825;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3535,381,0 chrXII 900812 . C G 4859.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4859,522,0 chrXII 900885 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.162;QD=24.28;ReadPosRankSum=1.691;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4128,456,0 chrXII 901022 . C G 2926 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.67;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2959,321,0 chrXII 901179 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.99;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3473,363,0 chrXII 901285 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.22;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3606,373,0 chrXII 901473 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.60;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3960,409,0 chrXII 901592 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.28;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3424,357,0 chrXII 901809 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.30;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2666,279,0 chrXII 901826 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.29;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2396,258,0 chrXII 901957 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.74;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3224,342,0 chrXII 902330 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=128;Dels=0.00;FS=3.335;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.901;QD=23.57;ReadPosRankSum=1.704;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:3050,327,0 chrXII 902591 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.01;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4577,481,0 chrXII 902616 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.296;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.511;QD=24.26;ReadPosRankSum=1.712;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4222,450,0 chrXII 902761 . G A 5020.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.37;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5020,520,0 chrXII 902948 . C A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.48;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4848,511,0 chrXII 903127 . A T 6143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=245;Dels=0.00;FS=3.788;HaplotypeScore=13.1545;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.071;QD=25.07;ReadPosRankSum=1.661;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:6143,643,0 chrXII 903720 . T A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.61;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3275,363,0 chrXII 903722 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.967;QD=21.24;ReadPosRankSum=1.647;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3462,366,0 chrXII 903957 . T C 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=265;Dels=0.00;FS=6.033;HaplotypeScore=21.0656;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.571;QD=23.20;ReadPosRankSum=2.950;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:3,260:265:99:6147,661,0 chrXII 904002 . C T 6047.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.0267;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.81;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6047,654,0 chrXII 904239 . T C 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=219;Dels=0.00;FS=6.660;HaplotypeScore=13.1056;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.127;QD=21.14;ReadPosRankSum=2.416;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4630,507,0 chrXII 904437 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.55;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2296,243,0 chrXII 904580 . C T 845 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:878,93,0 chrXII 904696 . A G 2520 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.47;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2553,288,0 chrXII 904915 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.6810;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.96;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4456,477,0 chrXII 905508 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0174;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.62;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2747,279,0 chrXII 905606 . T A 2686 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.34;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2719,285,0 chrXII 905672 . T C 2162 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.40;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2195,243,0 chrXII 905691 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.48;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1918,213,0 chrXII 905771 . A T 2747 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.31;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2780,291,0 chrXII 905887 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.33;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2734,282,0 chrXII 906336 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2122,222,0 chrXII 906431 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.185;QD=23.95;ReadPosRankSum=2.385;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3688,399,0 chrXII 907052 . G C 2674 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.46;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2707,291,0 chrXII 907076 . A G 2524 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8499;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.50;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2557,270,0 chrXII 907910 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.54;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3561,372,0 chrXII 908027 . G A 4342.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4399;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.73;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4342,468,0 chrXII 908778 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=119;Dels=0.00;FS=3.039;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.114;QD=18.59;ReadPosRankSum=2.388;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2245,240,0 chrXII 908785 . T A 1953 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.28;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1986,207,0 chrXII 908930 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.77;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3076,321,0 chrXII 909231 . T G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=138;Dels=0.00;FS=3.039;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.202;QD=22.58;ReadPosRankSum=2.395;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3149,339,0 chrXII 909328 . T A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3466,361,0 chrXII 909639 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.58;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2744,285,0 chrXII 909986 . C A 3191 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3224,339,0 chrXII 910020 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2446,255,0 chrXII 910090 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1732,180,0 chrXII 910292 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2344,255,0 chrXII 910376 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=26.28;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2871,294,0 chrXII 910431 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.395;HaplotypeScore=5.7988;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.029;QD=23.80;ReadPosRankSum=1.673;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2841,312,0 chrXII 910517 . T A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.35;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3754,388,0 chrXII 910650 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.021;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.054;QD=21.18;ReadPosRankSum=1.645;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3367,378,0 chrXII 910661 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.12;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3273,357,0 chrXII 910890 . T C 2718 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.65;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2751,291,0 chrXII 911258 . T C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=4.093;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.503;QD=22.18;ReadPosRankSum=1.707;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3049,327,0 chrXII 911387 . G T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.94;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3543,372,0 chrXII 911501 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.65;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3895,435,0 chrXII 911510 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.71;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3755,402,0 chrXII 912351 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.62;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1465,153,0 chrXII 912364 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.18;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1433,156,0 chrXII 912538 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.41;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2549,270,0 chrXII 912718 . C G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.65;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3311,354,0 chrXII 912982 . G T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.28;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3319,357,0 chrXII 913000 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.47;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3435,375,0 chrXII 913219 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.52;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3458,363,0 chrXII 913342 . G A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4753,519,0 chrXII 913431 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=188;Dels=0.00;FS=3.830;HaplotypeScore=12.8213;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.056;QD=24.87;ReadPosRankSum=1.713;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4675,496,0 chrXII 913684 . G A 6302.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.3868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.05;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6302,682,0 chrXII 913801 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.3902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:4661,507,0 chrXII 913906 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=186;Dels=0.00;FS=5.368;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.745;QD=23.36;ReadPosRankSum=2.940;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4345,471,0 chrXII 913948 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.0171;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.54;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3979,415,0 chrXII 914086 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.95;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3443,363,0 chrXII 914428 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=3.314;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.983;QD=23.85;ReadPosRankSum=1.709;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3554,393,0 chrXII 914959 . C G 2518 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.90;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2551,273,0 chrXII 914980 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.07;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2617,270,0 chrXII 915065 . A G 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.693;QD=21.54;ReadPosRankSum=1.701;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2402,255,0 chrXII 915110 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.10;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2206,234,0 chrXII 915461 . A T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.64;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3375,369,0 chrXII 916326 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.2941;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.96;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2932,309,0 chrXII 916338 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.64;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3088,327,0 chrXII 917166 . G C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9776;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.27;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3244,354,0 chrXII 917305 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.29;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1883,201,0 chrXII 917406 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=17.39;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1720,180,0 chrXII 917418 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.10;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2003,207,0 chrXII 917691 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.94;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3097,327,0 chrXII 917724 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.21;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3365,354,0 chrXII 918048 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3163,336,0 chrXII 918216 . G A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.03;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3985,421,0 chrXII 918511 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.42;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4956,529,0 chrXII 918570 . A G 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=193;Dels=0.00;FS=2.556;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.995;QD=24.27;ReadPosRankSum=2.964;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4684,502,0 chrXII 918824 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.323;QD=23.55;ReadPosRankSum=1.613;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3415,366,0 chrXII 919081 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.64;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1346,144,0 chrXII 919181 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.36;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:621,69,0 chrXII 919261 . T G 653 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:686,72,0 chrXII 919424 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.166;QD=24.90;ReadPosRankSum=1.702;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2896,312,0 chrXII 919648 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.84;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4203,442,0 chrXII 920189 . G T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5697;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.58;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4105,438,0 chrXII 920406 . A G 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.132;QD=22.61;ReadPosRankSum=1.657;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4205,445,0 chrXII 920445 . T C 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=197;Dels=0.00;FS=6.938;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.044;QD=22.79;ReadPosRankSum=2.361;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4489,478,0 chrXII 920484 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.742;HaplotypeScore=10.5341;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.509;QD=21.55;ReadPosRankSum=1.695;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4073,438,0 chrXII 920502 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.23;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3823,408,0 chrXII 920529 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.62;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3438,369,0 chrXII 920774 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3108,351,0 chrXII 920946 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.1104;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.59;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4317,454,0 chrXII 921053 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.609;QD=24.52;ReadPosRankSum=1.695;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4536,484,0 chrXII 921081 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=178;Dels=0.00;FS=3.264;HaplotypeScore=10.0017;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.276;QD=23.50;ReadPosRankSum=0.807;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4183,419,0 chrXII 921316 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.14;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4767,516,0 chrXII 921356 . C T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.9004;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.59;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5459,565,0 chrXII 921404 . A C 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=227;Dels=0.00;FS=6.981;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.769;QD=23.07;ReadPosRankSum=2.351;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:2,223:227:99:5237,556,0 chrXII 921420 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=223;Dels=0.00;FS=3.026;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.325;QD=21.83;ReadPosRankSum=2.406;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4868,514,0 chrXII 921443 . G C 4654.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.23;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4654,510,0 chrXII 922026 . C A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.36;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3259,348,0 chrXII 922092 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.91;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3246,348,0 chrXII 922242 . C G 3931.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.40;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3931,420,0 chrXII 922517 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4097,438,0 chrXII 922595 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3775;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.30;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4033,426,0 chrXII 922882 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=213;Dels=0.00;FS=12.031;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.126;QD=22.84;ReadPosRankSum=3.800;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:5,208:213:99:4864,520,0 chrXII 923234 . T G 5594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=257;Dels=0.00;FS=4.334;HaplotypeScore=12.8190;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.651;QD=21.77;ReadPosRankSum=1.691;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,254:257:99:5594,601,0 chrXII 923248 . G A 6011.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.67;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6011,622,0 chrXII 923570 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.92;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4121,459,0 chrXII 923659 . C G 3776.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.6601;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.08;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3776,411,0 chrXII 923885 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.50;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3431,357,0 chrXII 924128 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=185;Dels=0.00;FS=4.221;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.601;QD=24.99;ReadPosRankSum=-0.796;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4623,477,0 chrXII 924245 . A C 4612.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.0300;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.83;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4612,501,0 chrXII 924335 . T A 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=220;Dels=0.00;FS=10.084;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.064;QD=22.89;ReadPosRankSum=2.913;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:5035,520,0 chrXII 924464 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.36;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3924,412,0 chrXII 924492 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=8.338;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.196;QD=21.96;ReadPosRankSum=2.355;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4018,432,0 chrXII 924534 . C G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0156;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.42;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4219,453,0 chrXII 924556 . T C 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=2.953;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.032;QD=22.15;ReadPosRankSum=2.411;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4253,465,0 chrXII 924908 . A T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.3908;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.62;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5768,604,0 chrXII 925036 . T C 4777.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.42;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4777,534,0 chrXII 925133 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.51;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3785,414,0 chrXII 925354 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.99;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2048,213,0 chrXII 925463 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.41;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2140,225,0 chrXII 925665 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.32;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1909,204,0 chrXII 925788 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.538;QD=22.21;ReadPosRankSum=1.708;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3253,360,0 chrXII 925840 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.91;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3990,415,0 chrXII 925971 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.417;QD=24.35;ReadPosRankSum=1.710;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3847,414,0 chrXII 926441 . T G 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.204;QD=21.28;ReadPosRankSum=1.703;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5064,561,0 chrXII 926623 . C T 5192.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.54;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5192,558,0 chrXII 926814 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0842;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.237;QD=22.30;ReadPosRankSum=1.656;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4058,435,0 chrXII 926836 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=9.704;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.191;QD=22.73;ReadPosRankSum=2.390;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3727,399,0 chrXII 927424 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.77;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3968,412,0 chrXII 927454 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=6.113;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.590;QD=23.50;ReadPosRankSum=2.415;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3384,372,0 chrXII 927499 . A C 2997 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.23;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3030,327,0 chrXII 927638 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.93;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2925,303,0 chrXII 927914 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1212,132,0 chrXII 928158 . G T 1298 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.49;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1331,138,0 chrXII 928259 . A C 1307 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=21.78;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1340,141,0 chrXII 928263 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=21.55;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1326,141,0 chrXII 928273 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=21.35;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1378,150,0 chrXII 928276 . A T 1357 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=21.54;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1390,147,0 chrXII 928304 . T C 995 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=20.31;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,111,0 chrXII 928330 . C G 702 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=21.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:78:735,78,0 chrXII 928626 . C G 2580 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2613,279,0 chrXII 930728 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8575;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.71;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2855,303,0 chrXII 931113 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7459;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.40;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3122,351,0 chrXII 932266 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.31;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3112,324,0 chrXII 932584 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2430,273,0 chrXII 934434 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3561,370,0 chrXII 935517 . C G 5201.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.19;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:5201,553,0 chrXII 936343 . A C 4066.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.5009;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4066,430,0 chrXII 937855 . A G 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.015;DP=213;Dels=0.00;FS=18.501;HaplotypeScore=17.3832;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.139;QD=23.52;ReadPosRankSum=4.102;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:6,207:213:99:5010,561,0 chrXII 938134 . A G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7894;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.10;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4531,486,0 chrXII 940926 . G T 1063 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.43;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1096,114,0 chrXII 941058 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=17.77;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:797,84,0 chrXII 941517 . C T 950 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=13;QD=14.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:983,108,0 chrXII 944231 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.26;MQ0=138;QD=0.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:49,97:148:6:53,6,0 chrXII 944267 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.73;MQ0=138;QD=0.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:59,86:145:6:53,6,0 chrXII 944429 . C T 600 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.49;MQ0=130;QD=3.77;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:10,148:159:69:633,69,0 chrXII 947537 . A T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.31;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4183,442,0 chrXII 948612 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2554,267,0 chrXII 948691 . G C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.16;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:4001,426,0 chrXII 950322 . A G 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.595;DP=107;Dels=0.00;FS=9.533;HaplotypeScore=11.5141;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;MQRankSum=-0.009;QD=14.18;ReadPosRankSum=0.840;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1550,171,0 chrXII 950340 . A T 79.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.01;FS=3.297;HaplotypeScore=83.6312;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=-1.732;QD=0.84;ReadPosRankSum=1.695;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:12:112,12,0 chrXII 950350 . T A 850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=82;Dels=0.00;FS=27.814;HaplotypeScore=73.6365;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-1.070;QD=10.37;ReadPosRankSum=2.756;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:10,72:82:80:883,80,0 chrXII 950717 . G T 1908 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=26.87;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1941,201,0 chrXII 950788 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.433;QD=21.26;ReadPosRankSum=1.653;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1904,204,0 chrXII 950793 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.46;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1956,204,0 chrXII 950859 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=14.66;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1499,165,0 chrXII 951032 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.22;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2285,240,0 chrXII 951088 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.95;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2739,306,0 chrXII 951524 . T C 5741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=267;Dels=0.00;FS=3.093;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.078;QD=21.50;ReadPosRankSum=1.654;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:5741,639,0 chrXII 951540 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=244;Dels=0.00;FS=8.924;HaplotypeScore=11.1464;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.041;QD=21.61;ReadPosRankSum=3.417;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:4,238:244:99:5272,556,0 chrXII 951629 . A T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.04;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4915,531,0 chrXII 952187 . C T 5191.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.60;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5191,544,0 chrXII 952262 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.9630;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.96;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5051,546,0 chrXII 952346 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.60;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4542,501,0 chrXII 952469 . C T 6604.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=17.0678;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.83;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6604,712,0 chrXII 952975 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.26;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4583,472,0 chrXII 952994 . C T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.99;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4247,433,0 chrXII 953059 . G T 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.486;QD=20.55;ReadPosRankSum=1.609;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2951,284,0 chrXII 953266 . C T 389 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.91;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:23:45:422,45,0 chrXII 953330 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1460,156,0 chrXII 953605 . A G 5687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=19.5259;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.642;QD=24.10;ReadPosRankSum=1.642;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:1,230:236:99:5687,613,0 chrXII 953792 . A G 5495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=238;Dels=0.00;FS=6.262;HaplotypeScore=12.1213;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.098;QD=23.09;ReadPosRankSum=2.388;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5495,612,0 chrXII 953884 . G T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.43;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4400,471,0 chrXII 954049 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2893,309,0 chrXII 954167 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9333;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.92;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2577,285,0 chrXII 954228 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.0635;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.072;QD=24.67;ReadPosRankSum=1.677;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:3191,336,0 chrXII 954459 . T A 5509.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.5274;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.93;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5509,583,0 chrXII 954609 . G C 6336.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.4341;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.12;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,269:274:99:6336,702,0 chrXII 954827 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.7380;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=22.06;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4611,493,0 chrXII 954897 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=205;Dels=0.00;FS=5.457;HaplotypeScore=20.1774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.857;QD=23.00;ReadPosRankSum=2.966;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4715,507,0 chrXII 955168 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=188;Dels=0.00;FS=13.362;HaplotypeScore=12.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.850;QD=23.99;ReadPosRankSum=3.413;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:4,182:188:99:4510,481,0 chrXII 955630 . A T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.71;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4633,484,0 chrXII 955729 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.36;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3417,363,0 chrXII 955765 . G C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.47;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3287,357,0 chrXII 955822 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.88;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2696,288,0 chrXII 956170 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4167,442,0 chrXII 956371 . G C 4944.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.97;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4944,534,0 chrXII 956536 . T C 2805 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.423;QD=20.62;ReadPosRankSum=1.706;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2838,315,0 chrXII 956543 . C T 2877 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.31;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2910,306,0 chrXII 956545 . A G 2744 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=5.480;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.331;QD=19.88;ReadPosRankSum=2.905;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2777,303,0 chrXII 956593 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.30;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2568,267,0 chrXII 956833 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=102;Dels=0.00;FS=10.828;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.852;QD=23.24;ReadPosRankSum=2.892;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2403,267,0 chrXII 957061 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.57;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3262,360,0 chrXII 957064 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.67;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3170,339,0 chrXII 957115 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.75;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3320,348,0 chrXII 957510 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5328;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.34;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2670,288,0 chrXII 958009 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2250,246,0 chrXII 958253 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2883,303,0 chrXII 958334 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.04;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2629,282,0 chrXII 958370 . A G 2630 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.67;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2663,288,0 chrXII 958385 . C A 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.97;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2713,285,0 chrXII 958478 . T C 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.1613;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.028;QD=24.71;ReadPosRankSum=0.218;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4522,495,0 chrXII 958590 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.791;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.526;QD=23.96;ReadPosRankSum=1.710;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3785,417,0 chrXII 958623 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=196;Dels=0.00;FS=6.646;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.951;QD=23.97;ReadPosRankSum=2.399;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4698,504,0 chrXII 959018 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=202;Dels=0.00;FS=2.779;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.764;QD=24.37;ReadPosRankSum=2.425;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4923,528,0 chrXII 959099 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.88;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2943,321,0 chrXII 959121 . A T 193.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.895;DP=138;Dels=0.00;FS=13.653;HaplotypeScore=114.7916;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.096;QD=1.40;ReadPosRankSum=-5.418;SB=2.97 GT:AD:DP:GQ:PL 1/1:123,15:138:24:226,24,0 chrXII 959190 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=4.737;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.344;QD=22.48;ReadPosRankSum=1.621;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2865,306,0 chrXII 959546 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.70;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3507,367,0 chrXII 959627 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=25.57;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2718,285,0 chrXII 959679 . C A 2266 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.98;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2299,237,0 chrXII 959687 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.34;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2380,258,0 chrXII 959702 . A C 2348 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.24;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2381,267,0 chrXII 959834 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.49;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2384,255,0 chrXII 960045 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.11;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3365,351,0 chrXII 960131 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.82;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2193,237,0 chrXII 960141 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=107;Dels=0.00;FS=10.055;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.463;QD=19.30;ReadPosRankSum=2.934;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2098,225,0 chrXII 960158 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2288;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.21;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2223,234,0 chrXII 960228 . A C 2549 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.97;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2582,282,0 chrXII 960254 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.36;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2836,294,0 chrXII 960476 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.68;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4491,469,0 chrXII 960996 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.77;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2950,306,0 chrXII 960999 . A C 2838 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.27;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2871,312,0 chrXII 961196 . A T 2818 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.84;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2851,309,0 chrXII 961235 . T A 2378 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.87;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2411,261,0 chrXII 961463 . T C 3183 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=25.06;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3216,342,0 chrXII 961565 . A T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5638;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.61;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3470,361,0 chrXII 961655 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2729;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=20.31;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2877,300,0 chrXII 961667 . A G 2486 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.98;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2519,273,0 chrXII 961676 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.48;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2614,276,0 chrXII 961688 . T C 2496 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=18.49;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2529,282,0 chrXII 961731 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.693;QD=18.78;ReadPosRankSum=1.703;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2287,246,0 chrXII 961961 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=5.582;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.253;QD=22.25;ReadPosRankSum=1.658;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2147,228,0 chrXII 961974 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.27;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2171,228,0 chrXII 962189 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.59;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2911,306,0 chrXII 962683 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2529,264,0 chrXII 962717 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.533;HaplotypeScore=9.7137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.661;QD=24.35;ReadPosRankSum=1.696;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2419,261,0 chrXII 962945 . G T 2206 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.06;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2239,237,0 chrXII 963090 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.56;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2233,234,0 chrXII 963160 . T C 3170 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.81;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3203,348,0 chrXII 963364 . C G 2000 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.53;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2033,216,0 chrXII 963392 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=2.699;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-2.179;QD=23.71;ReadPosRankSum=2.390;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1977,213,0 chrXII 963469 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=16.9866;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.353;QD=20.74;ReadPosRankSum=1.700;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2314,246,0 chrXII 963501 . C A 54.97 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=94.7451;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=0.52;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:9:87,9,0 chrXII 963619 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.725;QD=23.83;ReadPosRankSum=1.703;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2845,303,0 chrXII 963807 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7951;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.24;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4767,490,0 chrXII 963928 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.4838;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.70;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4076,453,0 chrXII 964054 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.50;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3952,418,0 chrXII 964078 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.97;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3421,357,0 chrXII 964132 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.36;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2533,267,0 chrXII 964450 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1829;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.73;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3227,336,0 chrXII 964503 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.273;QD=18.54;ReadPosRankSum=1.712;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3222,342,0 chrXII 964507 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.565;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.683;QD=20.01;ReadPosRankSum=1.712;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3502,366,0 chrXII 964591 . T G 2599 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.21;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2632,282,0 chrXII 964951 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.92;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3397,357,0 chrXII 964996 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8499;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.38;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3803,397,0 chrXII 965047 . T A 2793 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.89;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2826,306,0 chrXII 965215 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.35;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2625,282,0 chrXII 965233 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.49;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2852,291,0 chrXII 965294 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.315;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.673;QD=23.55;ReadPosRankSum=1.703;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2835,306,0 chrXII 965342 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.78;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2511,270,0 chrXII 965348 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.66;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2450,258,0 chrXII 965441 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.4512;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.67;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2568,264,0 chrXII 965658 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.93;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3099,321,0 chrXII 966011 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=3.493;HaplotypeScore=15.5966;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.367;QD=23.49;ReadPosRankSum=1.664;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3617,405,0 chrXII 966217 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.18;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4028,426,0 chrXII 966841 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.39;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3732,405,0 chrXII 967075 . C G 2634 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2667,291,0 chrXII 967268 . A G 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.657;QD=22.41;ReadPosRankSum=1.692;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1983,219,0 chrXII 967302 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.00;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1749,189,0 chrXII 967624 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8690;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.43;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3491,393,0 chrXII 968703 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2382,261,0 chrXII 969104 . C A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3579,373,0 chrXII 969880 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.083;QD=22.75;ReadPosRankSum=1.701;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2581,282,0 chrXII 970288 . G T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.64;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3641,382,0 chrXII 972286 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1828,192,0 chrXII 972593 . G C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2187;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.74;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3834,411,0 chrXII 973644 . G A 5009.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:5009,540,0 chrXII 976172 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=25.71;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1370,147,0 chrXII 976426 . T G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=14.15;MQ0=16;QD=1.23;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:15,5:21:6:57,6,0 chrXII 976429 . A G 30.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=15;QD=1.54;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:13,5:20:6:62,6,0 chrXII 976436 . T G 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=20;QD=1.07;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:19,5:25:6:58,6,0 chrXII 976439 . A T 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.77;MQ0=20;MQRankSum=0.736;QD=1.38;ReadPosRankSum=0.736;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:21,5:26:6:67,6,0 chrXII 976441 . C A 32.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.53;MQ0=21;MQRankSum=0.736;QD=1.21;ReadPosRankSum=0.736;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:22,5:27:6:64,6,0 chrXII 976445 . T G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.31;MQ0=22;MQRankSum=0.736;QD=0.81;ReadPosRankSum=0.736;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:23,5:28:6:54,6,0 chrXII 976448 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=24;MQRankSum=1.495;QD=0.74;ReadPosRankSum=-0.198;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:25,6:31:6:54,6,0 chrXII 981461 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=9.74;MQ0=31;MQRankSum=0.727;QD=0.52;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:23,4:38:6:51,6,0 chrXII 981527 . G A 501.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DP=103;Dels=0.00;FS=115.501;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=52;MQRankSum=5.308;QD=4.86;ReadPosRankSum=-0.995;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:65,37:103:99:531,0,99 chrXII 983190 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.49;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4530,463,0 chrXII 983339 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=190;Dels=0.00;FS=3.021;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.019;QD=22.00;ReadPosRankSum=2.424;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4180,462,0 chrXII 986469 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.543;QD=25.25;ReadPosRankSum=1.706;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3384,354,0 chrXII 986998 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=157;Dels=0.00;FS=11.239;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.344;QD=21.54;ReadPosRankSum=2.890;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:3,152:157:99:3381,360,0 chrXII 986999 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=2.892;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.283;QD=21.44;ReadPosRankSum=2.369;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3301,351,0 chrXII 987115 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.49;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4542,498,0 chrXII 987151 . G A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.81;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4619,481,0 chrXII 987293 . T C 5509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.2648;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.717;QD=24.27;ReadPosRankSum=1.686;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5509,603,0 chrXII 987375 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4557,484,0 chrXII 987608 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.20;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4558,489,0 chrXII 987807 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.227;QD=24.30;ReadPosRankSum=1.670;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4107,436,0 chrXII 987906 . C T 3969.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.1088;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.91;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3969,429,0 chrXII 987942 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.20;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2963,321,0 chrXII 987981 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.70;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3271,342,0 chrXII 987999 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.49;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3383,354,0 chrXII 988464 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.80;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3570,387,0 chrXII 988495 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=2.610;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-2.096;QD=23.35;ReadPosRankSum=2.369;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3573,387,0 chrXII 989078 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.77;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2720,294,0 chrXII 989108 . A G 2401 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.63;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2434,264,0 chrXII 989610 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.30;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3645,379,0 chrXII 989828 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=177;Dels=0.00;FS=11.977;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.913;QD=20.10;ReadPosRankSum=2.925;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,171:177:99:3557,399,0 chrXII 989831 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.7272;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.77;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3531,367,0 chrXII 990547 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=142;Dels=0.00;FS=2.717;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.846;QD=22.23;ReadPosRankSum=2.397;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3189,345,0 chrXII 990848 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.967;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.524;QD=23.62;ReadPosRankSum=1.692;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4086,435,0 chrXII 990875 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.14;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4369,457,0 chrXII 990920 . G T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.13;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4608,481,0 chrXII 990941 . A G 4588.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8480;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.90;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4588,481,0 chrXII 991073 . C T 5336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;DP=229;Dels=0.00;FS=3.264;HaplotypeScore=11.5949;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.416;QD=23.30;ReadPosRankSum=1.717;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5336,536,0 chrXII 992601 . A C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.4091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.245;QD=20.03;ReadPosRankSum=2.402;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3137,339,0 chrXII 992990 . A G 2711 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5831;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.10;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2744,294,0 chrXII 993389 . G T 1817 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1850,189,0 chrXII 998554 . A C 3813.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.83;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3813,417,0 chrXII 1000559 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=187;Dels=0.00;FS=6.574;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.676;QD=22.40;ReadPosRankSum=2.358;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4189,459,0 chrXII 1001659 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3108,330,0 chrXII 1002243 . G C 506 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=25.5345;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=9.55;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,47:53:60:539,60,0 chrXII 1004300 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1467,159,0 chrXII 1004748 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.56;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3926,412,0 chrXII 1006048 . C G 75.56 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=57.8166;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;QD=1.08;SB=-4.660e+01 GT:AD:DP:GQ:PL 1/1:0,5:70:12:108,12,0 chrXII 1006086 . A G 1104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-1.577;QD=16.48;ReadPosRankSum=1.681;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1137,123,0 chrXII 1006150 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.25;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,186,0 chrXII 1006283 . A T 1667 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=19.85;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1700,180,0 chrXII 1006293 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=17.78;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1438,156,0 chrXII 1006308 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=18.61;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1652,177,0 chrXII 1006345 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.607;DP=95;Dels=0.00;FS=1.923;HaplotypeScore=4.7627;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;MQRankSum=-0.135;QD=10.48;ReadPosRankSum=3.353;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:5,89:95:99:1029,126,0 chrXII 1006350 . T A 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.821;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=0.039;QD=10.57;ReadPosRankSum=2.319;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1027,126,0 chrXII 1006428 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.117;QD=26.42;ReadPosRankSum=1.704;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3302,348,0 chrXII 1006629 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.41;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2625,285,0 chrXII 1006710 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.8226;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3680,402,0 chrXII 1006859 . T A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=26.16;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3662,376,0 chrXII 1006977 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.593;QD=22.26;ReadPosRankSum=1.709;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3317,354,0 chrXII 1007069 . A G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.291;QD=23.63;ReadPosRankSum=1.698;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2443,264,0 chrXII 1007084 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.75;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2034,219,0 chrXII 1007202 . T G 1111 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1144,126,0 chrXII 1007613 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2557,279,0 chrXII 1007694 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.2309;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.835;QD=24.16;ReadPosRankSum=2.412;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3198,351,0 chrXII 1007751 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1598;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.02;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3016,333,0 chrXII 1008642 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2843,309,0 chrXII 1008704 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3107,321,0 chrXII 1008786 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2118;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.663;QD=25.43;ReadPosRankSum=1.709;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3840,403,0 chrXII 1009478 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.03;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1935,201,0 chrXII 1010871 . A G 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.1195;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.385;QD=22.76;ReadPosRankSum=1.716;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4917,543,0 chrXII 1010934 . G C 4036.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=19.6569;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.20;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4036,432,0 chrXII 1011169 . T G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.55;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4165,465,0 chrXII 1011170 . C A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.95;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4504,469,0 chrXII 1011440 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.93;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1268,132,0 chrXII 1011654 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.32;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3849,414,0 chrXII 1012062 . G A 5332.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.31;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5332,553,0 chrXII 1012572 . C T 8166.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=34.3873;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.25;SB=-4.052e+03 GT:AD:DP:GQ:PL 1/1:0,365:367:99:8166,868,0 chrXII 1012749 . C T 8254.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=26.7290;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.66;SB=-4.187e+03 GT:AD:DP:GQ:PL 1/1:0,377:381:99:8254,865,0 chrXII 1013592 . A C 4667.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.77;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4667,510,0 chrXII 1013786 . C A 1137 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=9.4005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.58;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1170,123,0 chrXII 1014017 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.8736;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=24.28;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4274,448,0 chrXII 1014215 . A G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.716;DP=239;Dels=0.01;FS=67.421;HaplotypeScore=36.2751;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=0;MQRankSum=5.214;QD=0.13;ReadPosRankSum=-6.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,23:236:62:62,0,1874 chrXII 1014332 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.49;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3588,375,0 chrXII 1014919 . C T 6347.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.23;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6347,670,0 chrXII 1014976 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.61;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4726,493,0 chrXII 1014992 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.26;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4252,448,0 chrXII 1015108 . G A 5692.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.7555;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.22;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5692,598,0 chrXII 1015543 . T A 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2619;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.770;QD=25.45;ReadPosRankSum=1.694;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2349,258,0 chrXII 1015747 . G A 4399.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7345;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.17;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4399,460,0 chrXII 1016099 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.375;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.015;QD=23.42;ReadPosRankSum=1.712;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4075,438,0 chrXII 1016185 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4030,432,0 chrXII 1016924 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=24.05;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2270,240,0 chrXII 1016933 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.12;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1828,192,0 chrXII 1016971 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.98;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1963,204,0 chrXII 1016982 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=18.11;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1717,192,0 chrXII 1017002 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=16.28;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1531,168,0 chrXII 1017008 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4328;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.23;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1739,183,0 chrXII 1017052 . C A 2043 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.43;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2076,225,0 chrXII 1017081 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.04;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2429,252,0 chrXII 1017336 . T A 2418 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.42;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2451,258,0 chrXII 1017453 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.41;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3147,330,0 chrXII 1017596 . C A 3072 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3105,324,0 chrXII 1017718 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.89;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2207,237,0 chrXII 1017741 . T A 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=4.171;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.577;QD=23.73;ReadPosRankSum=1.689;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1955,207,0 chrXII 1019199 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.75;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1580,165,0 chrXII 1019284 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.46;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1764,189,0 chrXII 1019336 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.65;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2185,243,0 chrXII 1019357 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.60;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2535,270,0 chrXII 1019765 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;DP=191;Dels=0.00;FS=6.008;HaplotypeScore=9.7846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.700;QD=22.36;ReadPosRankSum=0.974;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4271,446,0 chrXII 1019825 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3039,315,0 chrXII 1019989 . T G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=154;Dels=0.00;FS=3.027;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.074;QD=23.62;ReadPosRankSum=2.417;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,148:154:99:3637,390,0 chrXII 1020038 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.59;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3027,330,0 chrXII 1020076 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.60;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3007,312,0 chrXII 1020118 . A T 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.711;QD=21.04;ReadPosRankSum=1.701;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2410,252,0 chrXII 1020119 . G T 2349 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.16;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2382,252,0 chrXII 1020142 . T C 2161 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.65;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2194,243,0 chrXII 1020176 . A G 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.133;QD=19.72;ReadPosRankSum=1.666;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2084,225,0 chrXII 1020245 . T G 1921 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.44;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1954,210,0 chrXII 1020317 . G C 2152 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.10;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2185,240,0 chrXII 1020320 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.72;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2270,234,0 chrXII 1020437 . T C 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=2.955;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.900;QD=22.22;ReadPosRankSum=2.404;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2433,264,0 chrXII 1020605 . T C 2842 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.88;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2875,312,0 chrXII 1020991 . T G 2428 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5577;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2461,267,0 chrXII 1021226 . A C 2777 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.70;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2810,309,0 chrXII 1021339 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.209;QD=24.01;ReadPosRankSum=1.708;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3434,372,0 chrXII 1021405 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=22.19;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2984,309,0 chrXII 1021444 . T A 2436 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=17.03;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2469,258,0 chrXII 1021463 . A G 2071 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=5.610;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;MQRankSum=-2.144;QD=14.79;ReadPosRankSum=2.936;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2104,234,0 chrXII 1021464 . G A 2038 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=14.88;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2071,228,0 chrXII 1021471 . T C 2157 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=15.08;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2190,240,0 chrXII 1021493 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0481;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.01;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2307,252,0 chrXII 1021577 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=19.58;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2754,291,0 chrXII 1021580 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.85;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2710,300,0 chrXII 1021739 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=2.946;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.824;QD=22.66;ReadPosRankSum=2.387;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2729,288,0 chrXII 1021808 . T G 2757 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.56;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2790,306,0 chrXII 1022290 . A G 2431 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2464,267,0 chrXII 1022329 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2479,267,0 chrXII 1022511 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3797,391,0 chrXII 1022570 . T G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.355;QD=23.92;ReadPosRankSum=2.372;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:4617,495,0 chrXII 1022895 . T C 5926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=256;Dels=0.00;FS=6.315;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.050;QD=23.15;ReadPosRankSum=2.363;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:5926,628,0 chrXII 1022933 . C T 6328.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.72;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6328,655,0 chrXII 1023101 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.00;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4268,477,0 chrXII 1023248 . A T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3768,394,0 chrXII 1023320 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4098,424,0 chrXII 1023413 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.92;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3965,406,0 chrXII 1023800 . C G 4704.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.76;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4704,513,0 chrXII 1023823 . C A 4162.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=26.18;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4162,433,0 chrXII 1024016 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.04;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.11;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:44:96:912,96,0 chrXII 1024017 . C T 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-0.325;QD=20.65;ReadPosRankSum=2.333;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:2,40:43:96:921,96,0 chrXII 1024168 . G C 1754 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1787,192,0 chrXII 1024253 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.95;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1833,192,0 chrXII 1024265 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=2.676;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.013;QD=20.37;ReadPosRankSum=2.348;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2009,222,0 chrXII 1024509 . C A 3086 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=16.6767;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.89;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3119,333,0 chrXII 1024747 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.67;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3117,333,0 chrXII 1024893 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.83;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1332,147,0 chrXII 1025145 . A G 702 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.12;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:81:735,81,0 chrXII 1025149 . G T 739 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.07;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:81:772,81,0 chrXII 1025152 . C T 702 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=14.62;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:78:735,78,0 chrXII 1025223 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.35;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2040,222,0 chrXII 1025420 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.43;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3298,342,0 chrXII 1025702 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8453;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.36;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3175,339,0 chrXII 1025733 . C G 2674 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.41;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2707,297,0 chrXII 1025753 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.344;QD=21.13;ReadPosRankSum=1.677;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2716,294,0 chrXII 1025801 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.403;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.791;QD=22.40;ReadPosRankSum=1.625;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3629,402,0 chrXII 1026008 . C A 2878 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.84;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2911,303,0 chrXII 1026103 . G T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3359,351,0 chrXII 1026205 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.575;QD=23.13;ReadPosRankSum=1.706;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3109,324,0 chrXII 1026208 . G C 2880 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.33;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2913,312,0 chrXII 1026243 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.18;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2717,285,0 chrXII 1026338 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.29;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2502,261,0 chrXII 1026523 . C T 965 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=21.93;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:998,108,0 chrXII 1026527 . A T 841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=0.000;QD=20.02;ReadPosRankSum=1.650;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:874,90,0 chrXII 1026581 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:621,66,0 chrXII 1026781 . G C 492 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.37;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:32:57:525,57,0 chrXII 1026865 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.33;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1194,123,0 chrXII 1026880 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=14.44;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,62:64:99:957,108,0 chrXII 1026889 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.415;QD=14.72;ReadPosRankSum=1.683;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1078,117,0 chrXII 1027477 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.67;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4291,462,0 chrXII 1027483 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=8.109;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.549;QD=20.22;ReadPosRankSum=2.385;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3842,423,0 chrXII 1027555 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.6886;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.542;QD=19.47;ReadPosRankSum=1.687;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:4518,489,0 chrXII 1027573 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.1290;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.04;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5008,546,0 chrXII 1027615 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.0338;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.53;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4680,490,0 chrXII 1027717 . G A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.52;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4845,502,0 chrXII 1028133 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.16;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3203,333,0 chrXII 1028155 . G T 2976 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.01;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3009,312,0 chrXII 1028305 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.37;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2275,243,0 chrXII 1028480 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=22.5227;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.98;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4341,468,0 chrXII 1028522 . G T 5323.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.99;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5323,576,0 chrXII 1028683 . G C 4450.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.23;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4450,475,0 chrXII 1028684 . T C 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=225;Dels=0.00;FS=9.699;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.355;QD=19.37;ReadPosRankSum=2.319;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4358,486,0 chrXII 1028958 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.80;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2966,327,0 chrXII 1028974 . C G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=134.4237;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=0.13;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:143:6:50,6,0 chrXII 1029028 . A T 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.140;DP=116;Dels=0.00;FS=8.644;HaplotypeScore=10.6157;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.704;QD=17.40;ReadPosRankSum=3.382;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:4,112:116:99:2051,225,0 chrXII 1029053 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.01;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2587,276,0 chrXII 1029567 . A T 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=2.826;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.293;QD=23.23;ReadPosRankSum=2.364;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3996,418,0 chrXII 1030090 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2927,303,0 chrXII 1030200 . T G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=3.037;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.174;QD=22.38;ReadPosRankSum=2.357;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3032,327,0 chrXII 1030239 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.88;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4155,436,0 chrXII 1030577 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=21.43;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2947,315,0 chrXII 1030580 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=21.73;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2858,303,0 chrXII 1030604 . T G 2166 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=2.971;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=-1.159;QD=17.75;ReadPosRankSum=2.389;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2199,237,0 chrXII 1030608 . C T 2221 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=17.91;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2254,237,0 chrXII 1030614 . A G 2168 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;MQRankSum=0.730;QD=17.92;ReadPosRankSum=1.703;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2201,234,0 chrXII 1031518 . A G 5451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=234;Dels=0.00;FS=5.175;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.468;QD=23.29;ReadPosRankSum=3.416;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5451,600,0 chrXII 1031571 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.4684;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.24;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4184,442,0 chrXII 1031689 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.0401;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.45;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3863,406,0 chrXII 1032016 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.7464;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.50;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2505,264,0 chrXII 1032050 . A C 1866 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1899,201,0 chrXII 1032238 . G A 2009 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.08;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2042,216,0 chrXII 1032444 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3166,330,0 chrXII 1032807 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.665;QD=20.63;ReadPosRankSum=1.697;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4106,438,0 chrXII 1032821 . A C 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.506;QD=20.18;ReadPosRankSum=1.715;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4259,471,0 chrXII 1032857 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2930;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.66;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3966,418,0 chrXII 1032869 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.03;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3577,396,0 chrXII 1033418 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.106;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.417;QD=24.61;ReadPosRankSum=1.707;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3371,372,0 chrXII 1033763 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2794,291,0 chrXII 1033895 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2980,327,0 chrXII 1034027 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.59;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2787,291,0 chrXII 1034073 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.61;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2536,279,0 chrXII 1034198 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0244;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.56;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3757,408,0 chrXII 1034264 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.15;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3066,324,0 chrXII 1034324 . A T 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.544;QD=24.22;ReadPosRankSum=1.678;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3158,327,0 chrXII 1034684 . A C 5133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.647;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.163;QD=24.80;ReadPosRankSum=1.699;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5133,556,0 chrXII 1034753 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4065,421,0 chrXII 1034912 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.65;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4210,439,0 chrXII 1035228 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4325,471,0 chrXII 1035486 . A T 5459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=3.489;HaplotypeScore=13.9794;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.512;QD=23.73;ReadPosRankSum=1.642;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5459,571,0 chrXII 1035696 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.61;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3912,423,0 chrXII 1035755 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.13;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3957,438,0 chrXII 1036112 . T C 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.374;QD=24.74;ReadPosRankSum=1.693;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4379,468,0 chrXII 1036323 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.653;QD=23.81;ReadPosRankSum=1.679;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3152,342,0 chrXII 1036568 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.6565;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.10;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3059,318,0 chrXII 1036852 . G T 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.286;QD=22.30;ReadPosRankSum=1.448;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3814,405,0 chrXII 1037313 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.01;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3793,405,0 chrXII 1037709 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3200,345,0 chrXII 1038200 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.26;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3493,378,0 chrXII 1038361 . C A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.8203;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.34;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3898,432,0 chrXII 1038948 . A G 2969 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.74;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3002,324,0 chrXII 1039156 . A G 2576 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=23.63;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2609,279,0 chrXII 1039435 . T A 3054 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.67;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3087,318,0 chrXII 1039504 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=148;Dels=0.00;FS=7.622;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.877;QD=20.14;ReadPosRankSum=2.349;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3013,333,0 chrXII 1039762 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2645,288,0 chrXII 1040062 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.70;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2711,279,0 chrXII 1040071 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=117;Dels=0.00;FS=7.903;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.880;QD=22.23;ReadPosRankSum=2.407;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2634,279,0 chrXII 1040317 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.95;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3840,394,0 chrXII 1040530 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=176;Dels=0.00;FS=3.797;HaplotypeScore=14.2301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.940;QD=22.56;ReadPosRankSum=-0.030;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3970,411,0 chrXII 1040785 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.0863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4321,445,0 chrXII 1041070 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.82;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2772,300,0 chrXII 1041467 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.19;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2677,288,0 chrXII 1041901 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.58;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2485,270,0 chrXII 1042079 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.63;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2488,258,0 chrXII 1042085 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.87;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2475,255,0 chrXII 1042132 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.08;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2415,258,0 chrXII 1042274 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.607;QD=24.60;ReadPosRankSum=1.673;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2911,315,0 chrXII 1042302 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.37;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3030,312,0 chrXII 1042381 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=135;Dels=0.00;FS=2.787;HaplotypeScore=15.3201;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.155;QD=22.17;ReadPosRankSum=2.377;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3026,324,0 chrXII 1042439 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.63;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3450,360,0 chrXII 1042447 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.73;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3560,373,0 chrXII 1042673 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.45;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3222,339,0 chrXII 1043089 . C A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3343,366,0 chrXII 1043157 . G C 2891 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.71;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2924,315,0 chrXII 1043284 . A C 2082 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2115,222,0 chrXII 1043666 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.25;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2428,264,0 chrXII 1043700 . G T 2846 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.56;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2879,297,0 chrXII 1043701 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.77;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2796,297,0 chrXII 1043750 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.51;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3377,357,0 chrXII 1043950 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.499;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.774;QD=23.19;ReadPosRankSum=1.658;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3293,348,0 chrXII 1044159 . C A 2783 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.99;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2816,294,0 chrXII 1044366 . G T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.37;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:3255,339,0 chrXII 1044654 . A G 2820 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2853,309,0 chrXII 1044768 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.54;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2610,273,0 chrXII 1044838 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.06;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3141,327,0 chrXII 1045329 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.83;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3131,327,0 chrXII 1045359 . G T 3131 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.08;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3164,339,0 chrXII 1045642 . T C 3065 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3098,330,0 chrXII 1045779 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.39;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2512,273,0 chrXII 1046074 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3718,402,0 chrXII 1050100 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=2.670;HaplotypeScore=5.1925;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.230;QD=23.94;ReadPosRankSum=2.412;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3169,348,0 chrXII 1050450 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.09;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1977,210,0 chrXII 1051116 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.48;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3567,384,0 chrXII 1051443 . C G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.57;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3808,405,0 chrXII 1051794 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.59;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1991,213,0 chrXII 1051806 . T C 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.323;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.469;QD=21.51;ReadPosRankSum=1.694;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2012,219,0 chrXII 1052021 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=22.43;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1738,186,0 chrXII 1052040 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=22.57;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1342,150,0 chrXII 1052166 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.79;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1856,195,0 chrXII 1052191 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=21.49;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1344,144,0 chrXII 1052276 . T A 331 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=6.49;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:39:364,39,0 chrXII 1052344 . A T 1792 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=24.55;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1825,195,0 chrXII 1052381 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=25.35;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2593,276,0 chrXII 1052500 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.693;QD=23.79;ReadPosRankSum=1.615;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4234,456,0 chrXII 1052563 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.24;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3714,411,0 chrXII 1052595 . C A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=22.07;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,351,0 chrXII 1052608 . A T 2951 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=20.93;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2984,312,0 chrXII 1052618 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=19.98;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3030,318,0 chrXII 1052624 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=18.57;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2819,294,0 chrXII 1052679 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.203;QD=21.75;ReadPosRankSum=1.698;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4416,477,0 chrXII 1052745 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=199;Dels=0.00;FS=3.578;HaplotypeScore=11.0465;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.725;QD=21.50;ReadPosRankSum=1.714;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:4278,462,0 chrXII 1052775 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.11;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3929,412,0 chrXII 1052828 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=167;Dels=0.00;FS=10.273;HaplotypeScore=9.7401;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.000;QD=21.90;ReadPosRankSum=2.909;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3658,387,0 chrXII 1052841 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.584;QD=22.01;ReadPosRankSum=1.711;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3697,411,0 chrXII 1052955 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.41;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3082,321,0 chrXII 1052996 . T G 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.472;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.148;QD=25.25;ReadPosRankSum=1.707;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3535,381,0 chrXII 1053092 . C G 1678 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.72;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1711,183,0 chrXII 1053293 . A T 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=8;Dels=0.00;FS=9.700;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;MQRankSum=-1.589;QD=6.37;ReadPosRankSum=1.589;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,6:8:9:83,9,0 chrXII 1053367 . A G 1174 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1207,126,0 chrXII 1053416 . C T 1122 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1155,117,0 chrXII 1053478 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.88;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1418,150,0 chrXII 1053517 . T A 2006 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.54;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2039,219,0 chrXII 1053841 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.77;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3790,408,0 chrXII 1054142 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1612;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.25;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1986,210,0 chrXII 1054279 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.09;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2225,234,0 chrXII 1054311 . T A 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.451;QD=20.43;ReadPosRankSum=1.592;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1545,162,0 chrXII 1054312 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.28;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1534,165,0 chrXII 1054390 . A G 2096 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.06;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2129,228,0 chrXII 1054922 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.223;QD=22.23;ReadPosRankSum=2.381;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1656,183,0 chrXII 1054968 . C G 2085 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.97;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2118,219,0 chrXII 1055114 . T A 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=2.937;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.044;QD=23.80;ReadPosRankSum=2.362;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2699,294,0 chrXII 1055151 . T A 2795 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.01;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2828,291,0 chrXII 1055158 . G C 2640 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.56;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2673,288,0 chrXII 1055417 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.15;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2417,261,0 chrXII 1055554 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.10;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2041,213,0 chrXII 1055655 . A T 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.641;QD=22.25;ReadPosRankSum=1.687;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1724,180,0 chrXII 1055717 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=67;Dels=0.00;FS=2.858;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.903;QD=22.06;ReadPosRankSum=2.376;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1511,162,0 chrXII 1055730 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.28;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1565,168,0 chrXII 1055950 . T G 2685 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.35;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2718,297,0 chrXII 1056105 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.43;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3055,330,0 chrXII 1056262 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3391,372,0 chrXII 1056565 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.63;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3445,378,0 chrXII 1056569 . G C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.18;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3370,363,0 chrXII 1056641 . C A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.33;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3359,348,0 chrXII 1056760 . G C 4823.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.2938;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.00;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4823,534,0 chrXII 1056900 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.38;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3925,406,0 chrXII 1057013 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.61;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2984,330,0 chrXII 1057047 . G T 3122 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.58;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3155,336,0 chrXII 1057084 . T G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.100;QD=23.91;ReadPosRankSum=1.703;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2950,312,0 chrXII 1057223 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3204,345,0 chrXII 1057696 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.87;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3518,366,0 chrXII 1057759 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=145;Dels=0.00;FS=9.399;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.854;QD=24.12;ReadPosRankSum=2.896;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3498,375,0 chrXII 1057870 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3928,406,0 chrXII 1057933 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.767;QD=23.77;ReadPosRankSum=2.417;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3541,381,0 chrXII 1058607 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3368,346,0 chrXII 1058899 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.29;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2754,303,0 chrXII 1059052 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.72;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1808,195,0 chrXII 1059054 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.36;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1756,186,0 chrXII 1059176 . C A 2010 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.61;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2043,219,0 chrXII 1059203 . G T 2463 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=18.66;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2496,261,0 chrXII 1059412 . C T 305.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;DP=86;Dels=0.00;FS=79.106;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=4;MQRankSum=-2.036;QD=3.55;ReadPosRankSum=-1.059;SB=-3.728e+01 GT:AD:DP:GQ:PL 0/1:13,73:86:9:335,0,9 chrXII 1059428 . A T 558 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=4;MQRankSum=-1.732;QD=6.56;ReadPosRankSum=1.647;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:60:591,60,0 chrXII 1059505 . A T 1568 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=5;MQRankSum=0.866;QD=21.48;ReadPosRankSum=1.681;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1601,171,0 chrXII 1059553 . T C 118.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DP=40;Dels=0.00;FS=26.698;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=3;MQRankSum=-1.571;QD=2.95;ReadPosRankSum=0.292;SB=-5.250e+01 GT:AD:DP:GQ:PL 0/1:29,10:40:99:148,0,434 chrXII 1059564 . T A 401 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=3;QD=13.83;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:48:434,48,0 chrXII 1059588 . T G 96.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.94;MQ0=5;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:15:129,15,0 chrXII 1059597 . C T 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=4;MQRankSum=1.666;QD=7.25;ReadPosRankSum=0.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,10:13:15:127,15,0 chrXII 1059611 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.34;MQ0=3;MQRankSum=0.198;QD=3.80;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,7:10:9:70,9,0 chrXII 1060128 . C T 81.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:114,12,0 chrXII 1060156 . C A 427 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=2;QD=20.33;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:460,48,0 chrXII 1060183 . T A 351 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.08;MQ0=19;QD=9.49;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:42:384,42,0 chrXII 1060207 . A G 313 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.78;MQ0=31;QD=6.66;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:36:346,36,0 chrXII 1060218 . A G 306 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.25;MQ0=34;QD=5.77;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,49:53:36:339,36,0 chrXII 1060243 . A C 77.51 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.95;MQ0=45;QD=1.52;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,50:51:12:110,12,0 chrXII 1060255 . C T 276 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=46;QD=4.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:33:309,33,0 chrXII 1060315 . G C 1046 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=41;QD=10.57;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1079,120,0 chrXII 1060363 . T G 1551 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=47;QD=12.02;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1584,180,0 chrXII 1060386 . C T 2089 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=45;QD=13.83;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2122,228,0 chrXII 1060417 . C T 2525 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=50;QD=15.78;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2558,276,0 chrXII 1060460 . A G 2380 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=35;QD=15.56;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2413,264,0 chrXII 1060513 . T C 2569 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=15;QD=15.38;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2602,285,0 chrXII 1060555 . A G 2163 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=29;MQRankSum=-1.864;QD=13.87;ReadPosRankSum=2.372;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:3,152:156:99:2196,240,0 chrXII 1060636 . A T 1723 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=6;MQRankSum=-1.414;QD=16.57;ReadPosRankSum=1.661;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1756,183,0 chrXII 1060653 . T C 680 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=6;QD=9.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:75:81:713,81,0 chrXII 1060657 . A G 688 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=6;MQRankSum=-3.342;QD=9.83;ReadPosRankSum=3.314;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,66:70:78:721,78,0 chrXII 1060681 . G A 786 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=22.94;MQ0=3;QD=11.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:84:819,84,0 chrXII 1060690 . A G 572 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=6;MQRankSum=-1.732;QD=7.84;ReadPosRankSum=1.681;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,72:73:66:605,66,0 chrXII 1060701 . G A 503 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=10;QD=6.53;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:57:536,57,0 chrXII 1060717 . C T 423 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=17;QD=5.29;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:48:456,48,0 chrXII 1060722 . T C 380 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=90;Dels=0.00;FS=15.611;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=21;MQRankSum=-2.991;QD=4.22;ReadPosRankSum=3.248;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:4,86:90:45:413,45,0 chrXII 1060815 . T C 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=19.42;MQ0=12;MQRankSum=-1.296;QD=1.83;ReadPosRankSum=1.061;SB=-2.647e+01 GT:AD:DP:GQ:PL 1/1:2,21:24:9:76,9,0 chrXII 1060825 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=8;QD=3.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:79,9,0 chrXII 1060901 . C A 921 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=18;QD=13.35;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:954,105,0 chrXII 1061174 . T C 1876 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=14;QD=19.14;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1909,204,0 chrXII 1061569 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=24.76;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2509,267,0 chrXII 1061608 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=21.73;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1945,216,0 chrXII 1062383 . T C 137.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=22.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:170,18,0 chrXII 1062388 . G A 107.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=17.88;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:140,15,0 chrXII 1062523 . A G 105.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.47;MQ0=0;QD=5.84;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:138,18,0 chrXII 1062544 . A G 108.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=10.414;HaplotypeScore=3.7951;MLEAC=2;MLEAF=1.00;MQ=17.05;MQ0=0;MQRankSum=-1.419;QD=4.92;ReadPosRankSum=1.419;SB=-2.101e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:18:141,18,0 chrXII 1062662 . C A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;DP=37;Dels=0.00;FS=6.399;HaplotypeScore=11.6808;MLEAC=1;MLEAF=0.500;MQ=15.00;MQ0=3;MQRankSum=2.753;QD=0.46;ReadPosRankSum=0.401;SB=-4.922e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:32:47,0,32 chrXII 1062666 . G T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;DP=37;Dels=0.00;FS=9.551;HaplotypeScore=18.6345;MLEAC=1;MLEAF=0.500;MQ=14.72;MQ0=3;MQRankSum=2.297;QD=0.31;ReadPosRankSum=-0.662;SB=0.078 GT:AD:DP:GQ:PL 0/1:33,2:37:32:41,0,32 chrXII 1062670 . A G 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=39;Dels=0.00;FS=9.072;HaplotypeScore=17.6387;MLEAC=1;MLEAF=0.500;MQ=15.45;MQ0=3;MQRankSum=2.175;QD=0.36;ReadPosRankSum=-0.518;SB=-7.886e-03 GT:AD:DP:GQ:PL 0/1:37,2:39:32:44,0,32 chrXII 1062682 . T A 103.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=19.0384;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=3;MQRankSum=4.063;QD=2.24;ReadPosRankSum=-2.155;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:39,7:46:39:133,0,39 chrXII 1062731 . G A 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;DP=97;Dels=0.00;FS=4.207;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=4;MQRankSum=-0.703;QD=1.38;ReadPosRankSum=-4.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,34:97:99:164,0,621 chrXII 1062746 . G A 419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.134;DP=120;Dels=0.00;FS=4.447;HaplotypeScore=26.5356;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=4;MQRankSum=5.193;QD=3.49;ReadPosRankSum=5.373;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:96,24:120:99:449,0,605 chrXII 1062754 . G A 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475;DP=128;Dels=0.00;FS=3.151;HaplotypeScore=31.0052;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=7;MQRankSum=4.651;QD=2.90;ReadPosRankSum=2.783;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:103,23:128:99:401,0,756 chrXII 1062772 . G A 300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.858;DP=115;Dels=0.00;FS=2.875;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=8;MQRankSum=-0.221;QD=2.61;ReadPosRankSum=-4.005;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:83,32:115:99:330,0,759 chrXII 1062793 . A G 961 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=94;Dels=0.00;FS=3.663;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=8;MQRankSum=-1.531;QD=10.22;ReadPosRankSum=1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:994,108,0 chrXII 1062800 . T C 935 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.946;DP=89;Dels=0.00;FS=9.929;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=7;MQRankSum=4.980;QD=10.51;ReadPosRankSum=1.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,75:89:99:968,105,0 chrXII 1062841 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;DP=38;Dels=0.00;FS=9.553;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=4;MQRankSum=0.586;QD=0.32;ReadPosRankSum=-3.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,13:38:42:42,0,375 chrXII 1062847 . C T 359.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=29;Dels=0.00;FS=7.258;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=1;MQRankSum=-0.966;QD=12.39;ReadPosRankSum=2.748;SB=-1.222e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:8:391,8,0 chrXII 1062865 . A T 370 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.22;MQ0=4;MQRankSum=1.045;QD=12.76;ReadPosRankSum=-1.296;SB=-1.422e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:35:403,35,0 chrXII 1062868 . C A 388 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.22;MQ0=4;QD=13.38;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,25:29:54:421,54,0 chrXII 1062869 . C A 371 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.22;MQ0=4;MQRankSum=1.380;QD=12.79;ReadPosRankSum=-1.631;SB=-1.432e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:35:404,35,0 chrXII 1062881 . T C 329.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=80;Dels=0.00;FS=11.721;HaplotypeScore=11.4634;MLEAC=1;MLEAF=0.500;MQ=12.82;MQ0=21;MQRankSum=3.646;QD=4.11;ReadPosRankSum=5.284;SB=-1.221e+02 GT:AD:DP:GQ:PL 0/1:40,40:80:11:359,0,11 chrXII 1062894 . A T 358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DP=147;Dels=0.00;FS=1.725;HaplotypeScore=32.6918;MLEAC=1;MLEAF=0.500;MQ=15.17;MQ0=23;MQRankSum=5.070;QD=2.44;ReadPosRankSum=-4.181;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:100,47:147:99:388,0,478 chrXII 1062951 . C T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;DP=193;Dels=0.00;FS=43.090;HaplotypeScore=42.7274;MLEAC=1;MLEAF=0.500;MQ=18.33;MQ0=27;MQRankSum=2.176;QD=0.12;ReadPosRankSum=-3.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,40:193:53:53,0,1333 chrXII 1062954 . T C 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.533;DP=199;Dels=0.00;FS=42.573;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=27;MQRankSum=1.876;QD=0.10;ReadPosRankSum=-2.840;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,40:199:49:49,0,1364 chrXII 1062988 . A C 2269 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=147;Dels=0.00;FS=5.895;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=11;MQRankSum=0.408;QD=15.44;ReadPosRankSum=1.681;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2302,249,0 chrXII 1062996 . A G 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;DP=163;Dels=0.00;FS=30.569;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=14;MQRankSum=4.883;QD=1.94;ReadPosRankSum=1.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,36:163:99:346,0,1561 chrXII 1063020 . T G 533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.422;DP=188;Dels=0.00;FS=16.640;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=19;MQRankSum=3.203;QD=2.84;ReadPosRankSum=0.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,65:188:99:563,0,1790 chrXII 1063086 . C A 362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=199;Dels=0.00;FS=147.878;HaplotypeScore=20.3388;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=30;MQRankSum=2.141;QD=1.82;ReadPosRankSum=3.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,75:199:99:392,0,1182 chrXII 1063095 . T G 647.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.684;DP=213;Dels=0.00;FS=21.234;HaplotypeScore=28.0183;MLEAC=1;MLEAF=0.500;MQ=20.37;MQ0=30;MQRankSum=1.388;QD=3.04;ReadPosRankSum=0.306;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:132,81:213:99:677,0,511 chrXII 1063110 . T C 732.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DP=205;Dels=0.00;FS=19.606;HaplotypeScore=13.3142;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=33;MQRankSum=-1.444;QD=3.57;ReadPosRankSum=-0.909;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:39,166:205:99:762,0,298 chrXII 1063152 . C T 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.752;DP=184;Dels=0.00;FS=76.223;HaplotypeScore=42.7746;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=25;MQRankSum=3.841;QD=1.59;ReadPosRankSum=-6.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,46:184:99:323,0,950 chrXII 1063161 . T C 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990;DP=220;Dels=0.00;FS=31.618;HaplotypeScore=76.2931;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=22;MQRankSum=0.652;QD=0.50;ReadPosRankSum=-1.424;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,43:220:99:139,0,2060 chrXII 1063170 . C T 304.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.836;DP=232;Dels=0.00;FS=28.472;HaplotypeScore=9.7637;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=22;MQRankSum=3.183;QD=1.31;ReadPosRankSum=-0.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,42:232:99:334,0,2222 chrXII 1063233 . T C 425.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=27.8943;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=4;MQRankSum=-5.366;QD=2.00;ReadPosRankSum=-3.813;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:164,49:213:99:455,0,2511 chrXII 1063241 . A G 410.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DP=212;Dels=0.00;FS=3.402;HaplotypeScore=55.3887;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=4;MQRankSum=-8.254;QD=1.93;ReadPosRankSum=0.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,52:212:99:440,0,2173 chrXII 1063242 . G T 478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.254;DP=210;Dels=0.00;FS=5.279;HaplotypeScore=58.2882;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=3;MQRankSum=-8.284;QD=2.28;ReadPosRankSum=0.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,54:210:99:508,0,1945 chrXII 1063254 . A G 1420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DP=159;Dels=0.00;FS=4.053;HaplotypeScore=18.2060;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=2;MQRankSum=-7.771;QD=8.93;ReadPosRankSum=1.137;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,106:159:99:1450,0,594 chrXII 1063257 . T C 1466.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DP=139;Dels=0.00;FS=8.071;HaplotypeScore=12.1518;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=2;MQRankSum=-7.503;QD=10.55;ReadPosRankSum=1.951;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:40,93:139:99:1496,0,520 chrXII 1063404 . A G 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=15;Dels=0.00;FS=19.956;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=21.54;MQ0=3;MQRankSum=0.689;QD=5.33;ReadPosRankSum=1.134;SB=0.128 GT:AD:DP:GQ:PL 0/1:6,9:15:92:110,0,92 chrXII 1063423 . A G 80.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;DP=12;Dels=0.00;FS=13.222;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=2;MQRankSum=2.450;QD=6.67;ReadPosRankSum=1.268;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:6,6:12:67:110,0,67 chrXII 1063449 . C T 117.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=1;QD=13.01;SB=-5.563e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:150,18,0 chrXII 1063460 . A G 88.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=0;QD=17.65;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:121,15,0 chrXII 1063476 . C T 62.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=0;QD=15.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:95,12,0 chrXII 1063481 . C G 62.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=0;QD=15.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:95,12,0 chrXII 1063590 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=13.18;MQ0=15;MQRankSum=1.231;QD=0.61;ReadPosRankSum=1.231;SB=-5.975e-03 GT:AD:DP:GQ:PL 0/1:15,5:20:42:42,0,63 chrXII 1063863 . C T 51.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.637;DP=67;Dels=0.00;FS=3.522;HaplotypeScore=3.5800;MLEAC=2;MLEAF=1.00;MQ=15.56;MQ0=39;MQRankSum=2.653;QD=0.78;ReadPosRankSum=0.796;SB=-2.444e+01 GT:AD:DP:GQ:PL 1/1:44,21:67:9:84,9,0 chrXII 1063872 . C T 80.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;DP=71;Dels=0.00;FS=15.315;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=37;MQRankSum=1.121;QD=1.13;ReadPosRankSum=0.612;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:38,33:71:12:113,12,0 chrXII 1063881 . C G 134.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=73;Dels=0.00;FS=12.430;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=38;MQRankSum=2.096;QD=1.84;ReadPosRankSum=2.025;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:40,33:73:18:167,18,0 chrXII 1063905 . A G 320 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=31;QD=4.10;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:31,47:78:39:353,39,0 chrXII 1063915 . A G 329 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=34;QD=4.27;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:34,43:77:39:362,39,0 chrXII 1063917 . A G 309 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=36;QD=3.91;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:36,43:79:39:342,39,0 chrXII 1063922 . G A 339 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=39;QD=4.13;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:39,43:82:39:372,39,0 chrXII 1063931 . C T 305 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=34.6803;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=48;QD=3.51;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:46,40:87:36:338,36,0 chrXII 1063948 . C A 275 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;DP=105;Dels=0.00;FS=50.055;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.25;MQ0=62;MQRankSum=3.054;QD=2.62;ReadPosRankSum=2.087;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:63,40:105:33:308,33,0 chrXII 1063955 . A T 280 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.057;DP=117;Dels=0.00;FS=29.291;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.42;MQ0=70;MQRankSum=2.535;QD=2.39;ReadPosRankSum=-0.133;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:69,48:117:33:313,33,0 chrXII 1063966 . G C 188.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.094;DP=113;Dels=0.00;FS=58.593;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.34;MQ0=72;MQRankSum=4.423;QD=1.66;ReadPosRankSum=0.468;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:87,25:113:24:221,24,0 chrXII 1063969 . C T 217.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DP=111;Dels=0.00;FS=61.060;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=70;MQRankSum=4.433;QD=1.96;ReadPosRankSum=-0.834;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:87,24:111:27:250,27,0 chrXII 1064046 . A T 1017 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=17;MQRankSum=1.266;QD=14.74;ReadPosRankSum=1.532;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1050,108,0 chrXII 1064078 . T G 1640 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=90;Dels=0.00;FS=4.329;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=6;MQRankSum=0.495;QD=18.22;ReadPosRankSum=1.650;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1673,183,0 chrXII 1064102 . C G 1985 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=2;QD=19.65;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2018,225,0 chrXII 1064145 . G A 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;DP=68;Dels=0.00;FS=11.992;HaplotypeScore=11.6449;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=2;MQRankSum=-0.193;QD=0.97;ReadPosRankSum=0.179;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,21:68:96:96,0,698 chrXII 1064147 . C T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=63;Dels=0.00;FS=41.990;HaplotypeScore=12.4336;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=2;MQRankSum=1.224;QD=1.11;ReadPosRankSum=1.682;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,13:63:99:100,0,548 chrXII 1064153 . G T 393.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DP=53;Dels=0.00;FS=11.293;HaplotypeScore=7.7562;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=2;MQRankSum=0.657;QD=7.42;ReadPosRankSum=-0.556;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:20,32:53:99:423,0,125 chrXII 1064182 . C T 192.01 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=2;QD=6.00;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,27:32:27:225,27,0 chrXII 1064183 . A G 166.03 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=21.25;MQ0=2;QD=5.36;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:24:199,24,0 chrXII 1064199 . C T 112.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.021;DP=29;Dels=0.00;FS=1.882;HaplotypeScore=6.8643;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=2;MQRankSum=1.429;QD=3.87;ReadPosRankSum=-2.012;SB=-1.631e+02 GT:AD:DP:GQ:PL 1/1:8,21:29:18:145,18,0 chrXII 1064241 . T A 98.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=22;Dels=0.00;FS=20.191;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=0;MQRankSum=-0.580;QD=4.47;ReadPosRankSum=2.150;SB=-2.716e-01 GT:AD:DP:GQ:PL 0/1:8,14:22:9:128,0,9 chrXII 1064246 . C A 93.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=23;Dels=0.00;FS=8.475;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=0;MQRankSum=-0.501;QD=4.06;ReadPosRankSum=1.036;SB=-1.034e+01 GT:AD:DP:GQ:PL 0/1:7,16:23:8:123,0,8 chrXII 1064264 . A G 90.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;DP=21;Dels=0.00;FS=43.085;HaplotypeScore=25.4120;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=0;MQRankSum=-0.041;QD=4.32;ReadPosRankSum=-0.124;SB=-3.797e+00 GT:AD:DP:GQ:PL 0/1:5,16:21:4:120,0,4 chrXII 1064267 . G A 93.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=21;Dels=0.00;FS=43.085;HaplotypeScore=27.3588;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=0;MQRankSum=0.702;QD=4.47;ReadPosRankSum=-0.619;SB=-3.797e+00 GT:AD:DP:GQ:PL 0/1:5,16:21:4:123,0,4 chrXII 1064270 . C G 93.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DP=21;Dels=0.00;FS=21.239;HaplotypeScore=30.2630;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=0;MQRankSum=0.050;QD=4.47;ReadPosRankSum=-0.553;SB=-3.180e+01 GT:AD:DP:GQ:PL 0/1:3,18:21:4:123,0,4 chrXII 1064280 . G T 100.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=18;Dels=0.00;FS=42.687;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=1.639;QD=5.60;ReadPosRankSum=-0.983;SB=-3.788e+00 GT:AD:DP:GQ:PL 0/1:6,12:18:4:130,0,4 chrXII 1064282 . C G 96.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DP=18;Dels=0.00;FS=42.687;HaplotypeScore=2.9782;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=1.639;QD=5.38;ReadPosRankSum=-1.077;SB=-3.788e+00 GT:AD:DP:GQ:PL 0/1:6,12:18:4:126,0,4 chrXII 1064284 . A G 89.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DP=18;Dels=0.00;FS=42.687;HaplotypeScore=2.9782;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=1.639;QD=4.99;ReadPosRankSum=-1.077;SB=-3.788e+00 GT:AD:DP:GQ:PL 0/1:6,12:18:4:119,0,4 chrXII 1064286 . A G 86.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DP=18;Dels=0.00;FS=42.687;HaplotypeScore=39.7919;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=1.639;QD=4.82;ReadPosRankSum=-2.014;SB=-3.788e+00 GT:AD:DP:GQ:PL 0/1:6,12:18:4:116,0,4 chrXII 1064292 . T A,G 118.81 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.317;DP=37;Dels=0.00;FS=11.761;HaplotypeScore=43.4574;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.04;MQ0=0;MQRankSum=-0.504;QD=3.21;ReadPosRankSum=2.317;SB=-1.318e+02 GT:AD:DP:GQ:PL 1/2:2,27,8:37:30:177,48,30,129,0,123 chrXII 1064301 . T G 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=40;Dels=0.00;FS=5.096;HaplotypeScore=47.7195;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,7:40:97:100,0,97 chrXII 1064309 . A G 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=51;Dels=0.00;FS=9.170;HaplotypeScore=38.4506;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=2;MQRankSum=0.140;QD=0.35;ReadPosRankSum=2.141;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:30,20:51:48:48,0,214 chrXII 1064310 . A G 94.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DP=54;Dels=0.00;FS=26.656;HaplotypeScore=40.0280;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=2;MQRankSum=-0.151;QD=1.74;ReadPosRankSum=-0.975;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:30,22:54:99:124,0,175 chrXII 1064345 . G A 525.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;DP=59;Dels=0.00;FS=1.705;HaplotypeScore=11.8559;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=2;MQRankSum=1.520;QD=8.90;ReadPosRankSum=-1.106;SB=-3.096e+02 GT:AD:DP:GQ:PL 0/1:7,52:59:16:555,0,16 chrXII 1064363 . G A 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;DP=59;Dels=0.00;FS=43.312;HaplotypeScore=28.3181;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=2;MQRankSum=1.312;QD=2.12;ReadPosRankSum=0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,21:59:99:155,0,402 chrXII 1064373 . A G 487.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DP=54;Dels=0.00;FS=8.179;HaplotypeScore=17.3735;MLEAC=1;MLEAF=0.500;MQ=22.63;MQ0=2;MQRankSum=1.760;QD=9.02;ReadPosRankSum=2.876;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:20,34:54:20:517,0,20 chrXII 1064375 . T A 654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=2;MQRankSum=0.713;QD=12.34;ReadPosRankSum=1.664;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:81:687,81,0 chrXII 1064408 . A G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=23;Dels=0.00;FS=17.042;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=0;MQRankSum=-2.237;QD=0.56;ReadPosRankSum=2.510;SB=-2.980e+01 GT:AD:DP:GQ:PL 1/1:3,20:23:6:44,6,0 chrXII 1064435 . T A 97.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.38;MQ0=0;MQRankSum=-1.542;QD=4.42;ReadPosRankSum=2.227;SB=-8.663e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:18:130,18,0 chrXII 1064439 . A G 119.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.747;DP=26;Dels=0.00;FS=14.075;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=16.95;MQ0=0;MQRankSum=3.563;QD=4.58;ReadPosRankSum=-1.278;SB=-7.156e+01 GT:AD:DP:GQ:PL 1/1:13,12:26:21:152,21,0 chrXII 1064451 . C A,G 454.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.069;DP=41;Dels=0.00;FS=2.593;HaplotypeScore=7.0981;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.08;MQ0=1;MQRankSum=4.017;QD=11.07;ReadPosRankSum=-1.130;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/2:8,9,23:41:88:514,369,348,145,0,88 chrXII 1064487 . C G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DP=50;Dels=0.00;FS=52.149;HaplotypeScore=8.6619;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=5;MQRankSum=0.068;QD=0.60;ReadPosRankSum=-3.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,11:50:60:60,0,562 chrXII 1064488 . A G 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.151;DP=50;Dels=0.00;FS=32.624;HaplotypeScore=9.4940;MLEAC=1;MLEAF=0.500;MQ=18.36;MQ0=5;MQRankSum=-0.217;QD=6.66;ReadPosRankSum=1.999;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:24,26:50:99:363,0,255 chrXII 1064493 . A C 832 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.4940;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=5;QD=16.31;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:865,110,0 chrXII 1064514 . A G 717 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=5;QD=16.67;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:750,93,0 chrXII 1064552 . T C 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.292;DP=39;Dels=0.00;FS=18.223;HaplotypeScore=1.9891;MLEAC=1;MLEAF=0.500;MQ=17.77;MQ0=1;MQRankSum=2.514;QD=2.97;ReadPosRankSum=-0.975;SB=1.18 GT:AD:DP:GQ:PL 0/1:28,11:39:99:146,0,104 chrXII 1064557 . G A 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=39;Dels=0.00;FS=21.789;HaplotypeScore=1.9891;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=2;MQRankSum=-2.642;QD=1.13;ReadPosRankSum=2.210;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:12,27:39:74:74,0,141 chrXII 1064565 . C T 159.03 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.8607;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=4;QD=3.18;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:24:192,24,0 chrXII 1064643 . T C 707 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.9051;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=3;QD=14.73;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:740,78,0 chrXII 1064659 . A C 497 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=1;QD=13.43;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:530,60,0 chrXII 1064679 . A T 161.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;MQRankSum=-0.124;QD=7.67;ReadPosRankSum=1.610;SB=2.97 GT:AD:DP:GQ:PL 1/1:5,16:21:24:194,24,0 chrXII 1064687 . G A 159.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=14.4425;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=8.37;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:192,24,0 chrXII 1064693 . A T 161.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=13.4622;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=0;MQRankSum=-0.578;QD=8.95;ReadPosRankSum=1.542;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:24:194,24,0 chrXII 1064713 . G A 107.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.196;DP=15;Dels=0.00;FS=12.430;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;MQRankSum=-0.718;QD=7.14;ReadPosRankSum=2.546;SB=1.05 GT:AD:DP:GQ:PL 1/1:4,11:15:18:140,18,0 chrXII 1064716 . A G 56.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;MQRankSum=-1.736;QD=3.77;ReadPosRankSum=1.504;SB=-5.549e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:89,12,0 chrXII 1064738 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=0;QD=2.65;SB=-8.585e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:77,9,0 chrXII 1064749 . T C 217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=0;MQRankSum=2.219;QD=6.78;ReadPosRankSum=-0.039;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:27:250,27,0 chrXII 1064788 . G A 435 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=0;MQRankSum=1.674;QD=7.37;ReadPosRankSum=1.380;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:51:468,51,0 chrXII 1064796 . G A 481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;MQRankSum=-0.880;QD=7.89;ReadPosRankSum=1.675;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:54:514,54,0 chrXII 1064797 . T C 454 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;MQRankSum=-0.653;QD=7.44;ReadPosRankSum=1.675;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:54:487,54,0 chrXII 1064804 . G C 481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=3.8867;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;MQRankSum=0.671;QD=7.63;ReadPosRankSum=1.676;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:54:514,54,0 chrXII 1064805 . A T 463 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.823;DP=63;Dels=0.00;FS=6.232;HaplotypeScore=3.8867;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;MQRankSum=0.882;QD=7.35;ReadPosRankSum=2.215;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:30:496,30,0 chrXII 1064835 . G A 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=8.5690;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=3.56;SB=-2.563e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:15:143,15,0 chrXII 1064837 . C T 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=8.5690;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=4.26;SB=-2.571e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:18:165,18,0 chrXII 1064840 . A G 134.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.256;DP=34;Dels=0.00;FS=6.154;HaplotypeScore=7.2941;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;MQRankSum=0.988;QD=3.95;ReadPosRankSum=1.720;SB=-2.191e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:18:167,18,0 chrXII 1064844 . G A 113.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DP=38;Dels=0.00;FS=27.631;HaplotypeScore=8.2520;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=0.701;QD=2.99;ReadPosRankSum=4.360;SB=-2.244e+02 GT:AD:DP:GQ:PL 0/1:10,27:38:1:142,0,1 chrXII 1064845 . G A 115.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;DP=39;Dels=0.00;FS=34.296;HaplotypeScore=9.2098;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=1.080;QD=2.96;ReadPosRankSum=4.458;SB=-2.235e+02 GT:AD:DP:GQ:PL 0/1:12,27:39:1:144,0,1 chrXII 1064851 . G A 44.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;DP=56;Dels=0.00;FS=64.712;HaplotypeScore=5.8093;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=0;MQRankSum=-0.439;QD=0.79;ReadPosRankSum=5.207;SB=-1.412e+02 GT:AD:DP:GQ:PL 0/1:32,24:56:10:74,0,10 chrXII 1064897 . G T 154.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=119.0544;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=1;MQRankSum=1.685;QD=2.57;ReadPosRankSum=2.142;SB=-2.307e+01 GT:AD:DP:GQ:PL 1/1:4,56:60:21:187,21,0 chrXII 1064908 . G A 150.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=13.0960;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=1;MQRankSum=1.073;QD=2.21;ReadPosRankSum=3.618;SB=3.04 GT:AD:DP:GQ:PL 1/1:9,57:67:21:183,21,0 chrXII 1064917 . A G 173.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.811;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=65.7452;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=2;MQRankSum=0.893;QD=2.44;ReadPosRankSum=4.565;SB=-8.696e-01 GT:AD:DP:GQ:PL 1/1:11,60:71:8:205,8,0 chrXII 1064924 . A T 41.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=77.5975;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=2;MQRankSum=2.175;QD=0.59;ReadPosRankSum=1.573;SB=-5.821e+01 GT:AD:DP:GQ:PL 0/1:6,62:69:10:71,0,10 chrXII 1064959 . G A 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=94.1479;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=1;MQRankSum=0.911;QD=9.80;ReadPosRankSum=1.740;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:1072,111,0 chrXII 1064984 . G C 1000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=25.4392;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=0;MQRankSum=0.187;QD=8.33;ReadPosRankSum=1.505;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,110:120:99:1033,111,0 chrXII 1064992 . G T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;DP=121;Dels=0.00;FS=160.138;HaplotypeScore=99.2933;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=0;MQRankSum=-3.092;QD=0.31;ReadPosRankSum=-0.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,71:121:67:67,0,744 chrXII 1064997 . A G 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.108;DP=117;Dels=0.00;FS=189.690;HaplotypeScore=27.0732;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;MQRankSum=4.039;QD=6.97;ReadPosRankSum=-0.212;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:74,43:117:93:848,93,0 chrXII 1065142 . G T 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;DP=156;Dels=0.00;FS=33.697;HaplotypeScore=125.9261;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=5;MQRankSum=0.411;QD=1.09;ReadPosRankSum=-8.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,65:156:99:200,0,236 chrXII 1065143 . T A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;DP=157;Dels=0.00;FS=30.598;HaplotypeScore=125.9262;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=5;MQRankSum=0.923;QD=1.33;ReadPosRankSum=-7.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,66:157:99:239,0,267 chrXII 1065288 . A C 803.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;DP=239;Dels=0.00;FS=5.578;HaplotypeScore=7.3772;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=4;MQRankSum=3.625;QD=3.36;ReadPosRankSum=-0.242;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:76,163:239:99:833,0,508 chrXII 1065396 . G A 351.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=11.7504;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=16;MQRankSum=2.465;QD=6.50;ReadPosRankSum=-1.900;SB=3.13 GT:AD:DP:GQ:PL 1/1:24,30:54:18:384,18,0 chrXII 1065397 . G T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=12.7437;MLEAC=1;MLEAF=0.500;MQ=18.66;MQ0=16;MQRankSum=1.994;QD=0.60;ReadPosRankSum=-0.897;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,11:55:63:63,0,283 chrXII 1065403 . T G 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.7382;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=17;MQRankSum=1.291;QD=2.88;ReadPosRankSum=1.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,18:57:97:194,0,97 chrXII 1065450 . C T 119.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=14.26;MQ0=29;MQRankSum=0.359;QD=1.39;ReadPosRankSum=-0.141;SB=-3.097e+00 GT:AD:DP:GQ:PL 0/1:12,74:86:7:149,0,7 chrXII 1065495 . T A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.272;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6882;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=23;MQRankSum=-2.004;QD=0.46;ReadPosRankSum=0.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,36:63:59:59,0,84 chrXII 1065496 . A T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6882;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=23;MQRankSum=-1.922;QD=0.48;ReadPosRankSum=-0.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,36:63:60:60,0,90 chrXII 1065500 . C G 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=13.57;MQ0=22;MQRankSum=-1.881;QD=0.52;ReadPosRankSum=-1.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,35:62:62:62,0,89 chrXII 1065559 . G C 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=29;Dels=0.00;FS=15.441;HaplotypeScore=5.8649;MLEAC=2;MLEAF=1.00;MQ=9.37;MQ0=22;MQRankSum=1.754;QD=1.76;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,8:29:9:83,9,0 chrXII 1065658 . A C 526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=34;MQRankSum=2.969;QD=6.34;ReadPosRankSum=-0.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,50:83:75:556,0,75 chrXII 1066012 . G A 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.77;MQ0=20;MQRankSum=-0.186;QD=2.11;ReadPosRankSum=-0.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,19:75:99:188,0,128 chrXII 1071639 . G A 16.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.50;MQ0=9;MQRankSum=-0.736;QD=1.35;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,8:12:19:46,0,19 chrXIII 5306 . T C 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=4;QD=4.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:6:58,6,0 chrXIII 9384 . T A 1584 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1617,159,0 chrXIII 9746 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.02;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2276,222,0 chrXIII 9829 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.51;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3023,318,0 chrXIII 11305 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.360;QD=24.43;ReadPosRankSum=2.381;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1792,186,0 chrXIII 13364 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.25;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3842,379,0 chrXIII 16498 . G T 6611.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.49;SB=-4.110e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6611,655,0 chrXIII 23620 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.51;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4183,430,0 chrXIII 24565 . A G 6011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=252;Dels=0.00;FS=5.944;HaplotypeScore=21.1841;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.476;QD=23.85;ReadPosRankSum=2.940;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:3,248:252:99:6011,625,0 chrXIII 25025 . A G 6557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=258;Dels=0.00;FS=2.374;HaplotypeScore=19.7416;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.163;QD=25.41;ReadPosRankSum=1.315;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:3,255:258:99:6557,652,0 chrXIII 25294 . A G 6519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=280;Dels=0.00;FS=5.732;HaplotypeScore=18.9980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.772;QD=23.28;ReadPosRankSum=2.909;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:3,274:280:99:6519,700,0 chrXIII 25638 . C T 5714.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.3947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5714,586,0 chrXIII 26251 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.86;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5301,532,0 chrXIII 26434 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.74;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2336,231,0 chrXIII 26468 . T C 1936 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.75;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1969,210,0 chrXIII 27274 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9335;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.59;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3206,319,0 chrXIII 27643 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=138;Dels=0.00;FS=9.917;HaplotypeScore=14.6537;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.336;QD=24.34;ReadPosRankSum=2.818;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3359,349,0 chrXIII 27865 . G T 2809 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.64;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2842,297,0 chrXIII 28338 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.677;QD=25.40;ReadPosRankSum=1.705;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3234,328,0 chrXIII 28623 . T C 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.712;QD=25.75;ReadPosRankSum=1.712;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4480,460,0 chrXIII 28653 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.19;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4559,472,0 chrXIII 28695 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.8712;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.01;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4658,463,0 chrXIII 28764 . A T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.4070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4496,451,0 chrXIII 28986 . C T 5262.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.1970;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.94;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5262,544,0 chrXIII 29145 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=223;Dels=0.00;FS=5.231;HaplotypeScore=18.8942;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.429;QD=20.72;ReadPosRankSum=2.968;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:3,215:223:99:4621,490,0 chrXIII 29401 . C T 6009.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.0212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.24;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6009,592,0 chrXIII 29826 . C T 5063.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.88;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5063,502,0 chrXIII 29994 . T G 5280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=219;Dels=0.00;FS=12.235;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.475;QD=24.11;ReadPosRankSum=3.566;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:5,214:219:99:5280,565,0 chrXIII 30565 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.174;QD=25.92;ReadPosRankSum=1.712;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4407,448,0 chrXIII 30827 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.331;QD=24.54;ReadPosRankSum=1.685;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3632,381,0 chrXIII 31828 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2195,216,0 chrXIII 32108 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=2.987;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.518;QD=23.76;ReadPosRankSum=2.358;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2599,267,0 chrXIII 32457 . G T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.50;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4399,442,0 chrXIII 32504 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.54;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4406,427,0 chrXIII 32621 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5094,514,0 chrXIII 32868 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3769,382,0 chrXIII 33005 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=147;Dels=0.00;FS=5.990;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.138;QD=24.01;ReadPosRankSum=2.924;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3530,372,0 chrXIII 33236 . G A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=24.52;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4880,487,0 chrXIII 33242 . G T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.18;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4589,466,0 chrXIII 33341 . A T 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.720;HaplotypeScore=12.2217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.997;QD=25.55;ReadPosRankSum=1.655;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4599,475,0 chrXIII 33464 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=185;Dels=0.00;FS=6.016;HaplotypeScore=12.2608;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.557;QD=23.21;ReadPosRankSum=2.907;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4294,456,0 chrXIII 33506 . C A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.8135;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.13;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5226,514,0 chrXIII 33680 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=4.340;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.372;QD=23.85;ReadPosRankSum=1.690;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3887,394,0 chrXIII 33731 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.30;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3449,346,0 chrXIII 33836 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=98.1496;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=13.14;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1400,144,0 chrXIII 34473 . T G 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=244;Dels=0.00;FS=3.686;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.547;QD=22.51;ReadPosRankSum=1.689;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5492,577,0 chrXIII 34672 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=165;Dels=0.00;FS=2.984;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.341;QD=23.44;ReadPosRankSum=2.345;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3868,394,0 chrXIII 34777 . G A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.02;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3892,388,0 chrXIII 34804 . C A 2956 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.42;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2989,298,0 chrXIII 34805 . T A 2921 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.32;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2954,295,0 chrXIII 36440 . T C 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.019;QD=25.67;ReadPosRankSum=1.695;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4775,502,0 chrXIII 37053 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=2.646;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.861;QD=26.20;ReadPosRankSum=2.416;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3878,405,0 chrXIII 37465 . T C 6068.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.93;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6068,628,0 chrXIII 37516 . G C 5722.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.21;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,222:227:99:5722,592,0 chrXIII 37611 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=24.93;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4537,454,0 chrXIII 37647 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=24.60;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4773,463,0 chrXIII 37836 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=9.152;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.084;QD=22.85;ReadPosRankSum=2.412;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3026,315,0 chrXIII 37845 . A T 2792 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.15;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2825,291,0 chrXIII 37888 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=19.19;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1856,183,0 chrXIII 37897 . A T 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=7.189;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.513;QD=17.02;ReadPosRankSum=2.274;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1463,156,0 chrXIII 37925 . T A 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.022;QD=21.05;ReadPosRankSum=1.644;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1696,168,0 chrXIII 37977 . T G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.953;QD=21.50;ReadPosRankSum=1.270;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2613,276,0 chrXIII 38045 . G T 2889 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.28;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2922,289,0 chrXIII 38072 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=25.19;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2880,291,0 chrXIII 38121 . A C 3117 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.16;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3150,330,0 chrXIII 39248 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.228;HaplotypeScore=12.5583;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.448;QD=23.26;ReadPosRankSum=1.684;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3326,348,0 chrXIII 39443 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.593;DP=201;Dels=0.00;FS=7.995;HaplotypeScore=13.9747;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.008;QD=23.14;ReadPosRankSum=3.655;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:5,196:201:99:4651,474,0 chrXIII 39858 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.46;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4175,447,0 chrXIII 39888 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.51;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3711,385,0 chrXIII 39977 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1980,198,0 chrXIII 40087 . T G 964 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:99:997,105,0 chrXIII 40376 . C A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=27.63;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3482,358,0 chrXIII 40406 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.80;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3943,414,0 chrXIII 40487 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.25;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3938,394,0 chrXIII 40511 . G A 4263.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.68;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4263,424,0 chrXIII 41051 . G T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5107,490,0 chrXIII 41615 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.064;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.321;QD=27.21;ReadPosRankSum=1.005;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4408,436,0 chrXIII 42127 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.30;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3206,333,0 chrXIII 42136 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.358;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.311;QD=18.25;ReadPosRankSum=1.703;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2205,237,0 chrXIII 42196 . C G 4478.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.9604;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.02;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4478,480,0 chrXIII 43096 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4670,472,0 chrXIII 43166 . A G 5745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.754;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.732;QD=26.23;ReadPosRankSum=1.716;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5745,586,0 chrXIII 43778 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.567;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.307;QD=22.94;ReadPosRankSum=2.370;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2877,303,0 chrXIII 44287 . T C 6668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.3915;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.742;QD=24.25;ReadPosRankSum=1.681;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6668,682,0 chrXIII 44455 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=16.51;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:4459,466,0 chrXIII 44503 . C T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.3420;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.32;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5267,523,0 chrXIII 45908 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.41;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2252,237,0 chrXIII 45947 . A G 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.088;QD=22.73;ReadPosRankSum=2.380;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1624,171,0 chrXIII 46032 . A G 310 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=11.48;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:36:343,36,0 chrXIII 46045 . G A 466 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=14.12;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:51:499,51,0 chrXIII 46074 . G A 951 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=17.61;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:96:984,96,0 chrXIII 46087 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=17.51;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1224,120,0 chrXIII 46211 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=26.75;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2976,292,0 chrXIII 46228 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=23.87;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2515,264,0 chrXIII 46256 . C G 2349 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.91;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2382,246,0 chrXIII 46262 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=5.984;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.928;QD=19.06;ReadPosRankSum=2.928;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2415,249,0 chrXIII 46331 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.006;DP=168;Dels=0.00;FS=5.538;HaplotypeScore=11.1401;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.238;QD=22.38;ReadPosRankSum=1.079;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:3,162:168:99:3759,394,0 chrXIII 46758 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.14;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2949,298,0 chrXIII 47637 . C G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.6195;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.83;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4407,477,0 chrXIII 47907 . A G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.559;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.468;QD=24.98;ReadPosRankSum=1.703;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2981,315,0 chrXIII 48814 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3028,318,0 chrXIII 49008 . A T 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.836;QD=22.28;ReadPosRankSum=1.553;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2617,270,0 chrXIII 49370 . A T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=27.13;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4069,409,0 chrXIII 49588 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.74;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3552,346,0 chrXIII 49620 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.10;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2435,261,0 chrXIII 49712 . A C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.180;QD=22.04;ReadPosRankSum=2.377;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1532,165,0 chrXIII 49717 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.15;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1539,162,0 chrXIII 49768 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:75:735,75,0 chrXIII 49898 . C T 941 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:96:974,96,0 chrXIII 50109 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.26;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3053,304,0 chrXIII 50514 . T A 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.8292;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.262;QD=24.55;ReadPosRankSum=1.711;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4076,415,0 chrXIII 50831 . C T 5497.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.69;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5497,547,0 chrXIII 50890 . C A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.33;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5086,523,0 chrXIII 50955 . T G 4556.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.4371;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4556,478,0 chrXIII 51084 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=171;Dels=0.00;FS=7.140;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.195;QD=23.56;ReadPosRankSum=2.421;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4028,415,0 chrXIII 51141 . A T 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=169;Dels=0.00;FS=6.021;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.149;QD=24.34;ReadPosRankSum=2.816;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4114,412,0 chrXIII 51256 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8189;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.73;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3749,379,0 chrXIII 51358 . G T 5139.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5139,514,0 chrXIII 51433 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9227;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.63;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3711,379,0 chrXIII 51596 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=192;Dels=0.00;FS=3.030;HaplotypeScore=7.4497;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.974;QD=25.72;ReadPosRankSum=2.372;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4938,529,0 chrXIII 51658 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.118;HaplotypeScore=13.3851;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.359;QD=26.25;ReadPosRankSum=1.711;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4331,451,0 chrXIII 51750 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=161;Dels=0.00;FS=5.956;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.281;QD=24.29;ReadPosRankSum=2.944;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3911,408,0 chrXIII 51822 . A T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.17;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4404,448,0 chrXIII 51951 . T A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.92;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4186,433,0 chrXIII 52018 . A T 6085.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6085,622,0 chrXIII 52335 . G A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3916;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.40;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4270,433,0 chrXIII 52482 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6450;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.14;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2844,283,0 chrXIII 52494 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.178;QD=20.48;ReadPosRankSum=1.681;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2818,291,0 chrXIII 52926 . C A 5509.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.11;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5509,541,0 chrXIII 53026 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.670;QD=23.65;ReadPosRankSum=1.715;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4729,490,0 chrXIII 53052 . T C 4325.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.18;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4325,442,0 chrXIII 53073 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2966;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.122;QD=20.76;ReadPosRankSum=1.696;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4048,429,0 chrXIII 53227 . G C 4335.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=26.27;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:4335,436,0 chrXIII 53276 . C G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.90;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3963,412,0 chrXIII 53532 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.62;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2360,237,0 chrXIII 53537 . T C 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=4.272;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=1.250;QD=16.62;ReadPosRankSum=1.702;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:1994,204,0 chrXIII 53642 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.427;QD=22.06;ReadPosRankSum=1.665;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3419,349,0 chrXIII 53825 . C A 1304 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=9.06;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:1337,135,0 chrXIII 53841 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.900;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=1.475;QD=11.41;ReadPosRankSum=1.711;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:1904,204,0 chrXIII 53934 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.3168;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.080;QD=21.42;ReadPosRankSum=1.712;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3748,391,0 chrXIII 53982 . C G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=22.09;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3600,384,0 chrXIII 53991 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=22.63;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3620,361,0 chrXIII 54136 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=179;Dels=0.00;FS=3.395;HaplotypeScore=14.4475;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.478;QD=23.60;ReadPosRankSum=1.654;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4224,430,0 chrXIII 54192 . A C 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.7713;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.586;QD=23.76;ReadPosRankSum=1.278;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4681,499,0 chrXIII 54576 . G C 1716 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.19;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1749,180,0 chrXIII 54586 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=24.48;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1526,156,0 chrXIII 54663 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=26.91;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:99:975,99,0 chrXIII 54916 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=6.861;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.778;QD=25.43;ReadPosRankSum=2.366;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3764,382,0 chrXIII 55092 . T C 3079 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.09;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3112,333,0 chrXIII 55098 . A C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.038;QD=21.66;ReadPosRankSum=1.682;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3000,318,0 chrXIII 55152 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=131;Dels=0.00;FS=2.593;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.131;QD=22.25;ReadPosRankSum=2.916;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2948,303,0 chrXIII 55558 . A G 2618 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.96;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2651,279,0 chrXIII 55582 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=25.20;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2629,270,0 chrXIII 55751 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=24.87;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3142,313,0 chrXIII 55773 . G C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.75;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3264,345,0 chrXIII 55803 . G T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.33;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3771,376,0 chrXIII 56231 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=127;Dels=0.00;FS=2.984;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.900;QD=23.42;ReadPosRankSum=2.392;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3007,315,0 chrXIII 56291 . G C 2824 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.24;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2857,291,0 chrXIII 56362 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.61;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2021,201,0 chrXIII 56369 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.904;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.161;QD=21.29;ReadPosRankSum=1.652;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1864,192,0 chrXIII 56748 . T A 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.902;QD=24.94;ReadPosRankSum=1.696;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2427,237,0 chrXIII 57144 . G A 5452.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.3164;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.12;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,221:226:99:5452,538,0 chrXIII 58688 . T G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=5.967;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.748;QD=22.93;ReadPosRankSum=1.711;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3784,388,0 chrXIII 58847 . T G 2434 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.40;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2467,255,0 chrXIII 59004 . A G 4506.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8185;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.17;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4506,472,0 chrXIII 59135 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.31;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3751,373,0 chrXIII 59485 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=8.631;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.365;QD=25.61;ReadPosRankSum=2.408;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:3080,330,0 chrXIII 59627 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2704,270,0 chrXIII 59776 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.12;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2528,255,0 chrXIII 60420 . G C 2953 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.20;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2986,306,0 chrXIII 60431 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.15;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3152,310,0 chrXIII 60610 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4337;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.38;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2829,285,0 chrXIII 60742 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.55;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2600,261,0 chrXIII 60754 . T G 2377 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.26;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2410,243,0 chrXIII 60925 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.86;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2955,306,0 chrXIII 61105 . G T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1285;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.86;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3307,337,0 chrXIII 61147 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.49;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3069,333,0 chrXIII 61164 . A C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.812;QD=24.30;ReadPosRankSum=1.624;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3144,319,0 chrXIII 61366 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=6.948;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.228;QD=23.96;ReadPosRankSum=2.390;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3028,321,0 chrXIII 61391 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=26.77;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3614,358,0 chrXIII 61433 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3896;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.62;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3472,343,0 chrXIII 61486 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3528,346,0 chrXIII 61663 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.76;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2861,303,0 chrXIII 61741 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.882;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.367;QD=25.03;ReadPosRankSum=1.706;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3329,343,0 chrXIII 61840 . A T 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=6.392;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.034;QD=24.52;ReadPosRankSum=2.267;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2681,264,0 chrXIII 62010 . G C 2089 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.22;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2122,219,0 chrXIII 62344 . C A 2411 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.86;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2444,243,0 chrXIII 62513 . A C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.034;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.539;QD=24.90;ReadPosRankSum=1.703;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2996,309,0 chrXIII 62570 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=22.87;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2343,231,0 chrXIII 62572 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.79;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2234,231,0 chrXIII 62594 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.04;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2598,270,0 chrXIII 62630 . G T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.88;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3545,369,0 chrXIII 62996 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.79;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4280,427,0 chrXIII 63305 . T A 3036 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3069,307,0 chrXIII 63358 . C A 2568 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.94;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2601,264,0 chrXIII 63473 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2128,222,0 chrXIII 63566 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2317,243,0 chrXIII 63608 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1959,201,0 chrXIII 63905 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.66;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3413,352,0 chrXIII 63947 . T A 2755 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.05;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2788,277,0 chrXIII 64724 . T G 3045 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3078,321,0 chrXIII 64972 . C A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=27.08;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3927,391,0 chrXIII 65795 . G T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=28.02;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3643,352,0 chrXIII 66821 . C G 3187 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=24.52;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3220,333,0 chrXIII 67415 . T C 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.232;QD=24.99;ReadPosRankSum=1.695;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4674,481,0 chrXIII 68113 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=2.886;HaplotypeScore=6.6646;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.929;QD=24.49;ReadPosRankSum=2.401;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2531,264,0 chrXIII 68826 . T C 8487.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=375;Dels=0.00;FS=18.458;HaplotypeScore=24.9148;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.054;QD=22.63;ReadPosRankSum=3.765;SB=-4.360e+03 GT:AD:DP:GQ:PL 1/1:5,369:375:99:8487,895,0 chrXIII 69109 . C G 7064.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.50;SB=-3.751e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:7064,754,0 chrXIII 69113 . A G 7210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=316;Dels=0.00;FS=5.927;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.428;QD=22.82;ReadPosRankSum=2.920;SB=-3.970e+03 GT:AD:DP:GQ:PL 1/1:3,311:316:99:7210,742,0 chrXIII 70380 . A G 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.034;DP=109;Dels=0.01;FS=2.679;HaplotypeScore=10.0523;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-0.011;QD=22.01;ReadPosRankSum=2.313;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2432,255,0 chrXIII 71137 . A G 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.404;DP=247;Dels=0.00;FS=5.231;HaplotypeScore=15.6964;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.089;QD=22.15;ReadPosRankSum=3.368;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:4,241:247:99:5471,565,0 chrXIII 71358 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.75;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4703,460,0 chrXIII 71382 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.085;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.323;QD=19.90;ReadPosRankSum=1.713;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3522,364,0 chrXIII 71397 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=6.356;HaplotypeScore=6.5261;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.521;QD=19.35;ReadPosRankSum=2.335;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3347,340,0 chrXIII 71867 . A T 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=213;Dels=0.00;FS=5.716;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.692;QD=24.95;ReadPosRankSum=2.939;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:5315,535,0 chrXIII 72027 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4475,445,0 chrXIII 72351 . C A 5663.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.79;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5663,586,0 chrXIII 73225 . G C 6171.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.82;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,235:239:99:6171,649,0 chrXIII 73368 . G A 8017.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=18.9790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-4.467e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:8017,796,0 chrXIII 73993 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:746,75,0 chrXIII 74346 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.17;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3324,334,0 chrXIII 74436 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9766;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.37;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3092,310,0 chrXIII 74632 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.0316;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.64;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2608,276,0 chrXIII 74704 . A G 2813 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.04;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2846,294,0 chrXIII 75046 . C A 2942 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.58;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2975,295,0 chrXIII 75133 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=28.12;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4611,451,0 chrXIII 75198 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.34;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3877,388,0 chrXIII 75251 . G C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.23;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3911,403,0 chrXIII 75275 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=26.58;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4546,463,0 chrXIII 75304 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=189;Dels=0.00;FS=8.527;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.578;QD=24.45;ReadPosRankSum=2.423;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4621,487,0 chrXIII 75396 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.7934;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=25.22;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3985,412,0 chrXIII 75558 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.086;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.492;QD=24.54;ReadPosRankSum=1.692;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4294,433,0 chrXIII 75576 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=6.544;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.167;QD=22.92;ReadPosRankSum=2.381;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4148,430,0 chrXIII 75781 . T A 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=4.459;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.698;QD=24.73;ReadPosRankSum=1.680;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3314,325,0 chrXIII 76188 . C T 4987.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.3023;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.20;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4987,499,0 chrXIII 76194 . A C 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=4.854;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.763;QD=21.09;ReadPosRankSum=1.716;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4471,475,0 chrXIII 76222 . A T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.83;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4165,412,0 chrXIII 76243 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.19;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:3714,396,0 chrXIII 76357 . G A 5385.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.3426;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.72;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5385,535,0 chrXIII 76517 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=226;Dels=0.00;FS=6.856;HaplotypeScore=5.8724;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.134;QD=20.85;ReadPosRankSum=2.406;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4713,499,0 chrXIII 76522 . A G 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=225;Dels=0.00;FS=7.386;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.301;QD=21.27;ReadPosRankSum=2.373;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4786,493,0 chrXIII 77019 . C G 2988 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.05;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3021,324,0 chrXIII 77482 . C T 6796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DP=269;Dels=0.00;FS=3.328;HaplotypeScore=16.1289;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.071;QD=25.26;ReadPosRankSum=0.393;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:1,268:269:99:6796,656,0 chrXIII 77676 . C G 4657.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.07;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4657,487,0 chrXIII 77679 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.77;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4462,457,0 chrXIII 77739 . G C 2974 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.80;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,138:143:99:3007,327,0 chrXIII 77796 . C A 3105 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.64;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3138,316,0 chrXIII 77879 . T G 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=11.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=-1.425;QD=20.50;ReadPosRankSum=2.386;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1632,168,0 chrXIII 77934 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.33;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1497,156,0 chrXIII 77979 . T G 2328 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.28;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2361,246,0 chrXIII 77997 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.75;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2835,283,0 chrXIII 78097 . A G 2159 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=12.467;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.076;QD=22.49;ReadPosRankSum=2.398;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2192,234,0 chrXIII 78101 . T C 1984 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.29;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2017,216,0 chrXIII 78103 . A G 1947 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.91;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1980,213,0 chrXIII 78125 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.86;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1839,183,0 chrXIII 78446 . T A 2607 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2640,262,0 chrXIII 78658 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.15;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3028,307,0 chrXIII 78710 . A C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=6.877;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.170;QD=24.05;ReadPosRankSum=2.390;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2991,312,0 chrXIII 78777 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.462;QD=26.01;ReadPosRankSum=1.703;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:3206,330,0 chrXIII 78806 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=25.75;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2994,304,0 chrXIII 78836 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.85;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2596,264,0 chrXIII 78839 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.69;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2652,273,0 chrXIII 78923 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.91;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3679,379,0 chrXIII 79258 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.20;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3380,334,0 chrXIII 79575 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.61;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4354,433,0 chrXIII 79713 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.738;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.756;QD=22.38;ReadPosRankSum=1.709;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3357,348,0 chrXIII 79761 . T G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.91;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3467,349,0 chrXIII 79783 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=8.409;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.452;QD=21.90;ReadPosRankSum=2.381;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3209,345,0 chrXIII 79850 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=121.3835;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.698;QD=19.64;ReadPosRankSum=1.706;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2685,279,0 chrXIII 79948 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.35;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2983,315,0 chrXIII 79953 . G C 2825 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.47;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2858,297,0 chrXIII 79968 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.83;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2651,264,0 chrXIII 80160 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=25.64;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4462,439,0 chrXIII 80220 . G A 4285.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.77;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4285,427,0 chrXIII 80292 . T C 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=196;Dels=0.00;FS=5.977;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.390;QD=25.60;ReadPosRankSum=2.964;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:5018,523,0 chrXIII 80397 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.4560;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.54;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2258,231,0 chrXIII 80403 . T C 2593 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.0334;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.25;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2626,267,0 chrXIII 80527 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.92;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4096,406,0 chrXIII 80887 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.39;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3695,376,0 chrXIII 81063 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.525;QD=21.69;ReadPosRankSum=-0.302;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,154:159:99:3448,330,0 chrXIII 81072 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.0035;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.72;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3681,370,0 chrXIII 81111 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.28;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3365,334,0 chrXIII 81228 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.27;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4793,502,0 chrXIII 81243 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.81;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4565,466,0 chrXIII 81991 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.47;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3621,364,0 chrXIII 82027 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.05;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2619,279,0 chrXIII 82155 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.87;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3962,406,0 chrXIII 82357 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.418;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.793;QD=25.19;ReadPosRankSum=1.713;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4458,460,0 chrXIII 83128 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.00;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4446,454,0 chrXIII 83176 . T C 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=189;Dels=0.00;FS=2.414;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.059;QD=25.44;ReadPosRankSum=2.640;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4809,505,0 chrXIII 83404 . G A 5473.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.00;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5473,544,0 chrXIII 83417 . C A 4834.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.48;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:4834,487,0 chrXIII 83860 . T C 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=232;Dels=0.00;FS=9.439;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.278;QD=22.75;ReadPosRankSum=2.793;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:3,225:232:99:5277,565,0 chrXIII 83964 . G A 5454.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.7790;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.82;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5454,541,0 chrXIII 84058 . C T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.46;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4627,454,0 chrXIII 84059 . G T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.79;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4488,454,0 chrXIII 84178 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.24;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4215,436,0 chrXIII 84233 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.00;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4275,442,0 chrXIII 84712 . C T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.05;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4403,457,0 chrXIII 84896 . A C 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=4.274;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.052;QD=25.30;ReadPosRankSum=1.662;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:5059,529,0 chrXIII 85192 . T A 5234.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.7944;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.69;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5234,526,0 chrXIII 85213 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.09;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4553,451,0 chrXIII 85247 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=199;Dels=0.00;FS=4.667;HaplotypeScore=15.9123;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.688;QD=22.90;ReadPosRankSum=2.864;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4557,469,0 chrXIII 85307 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0588;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.20;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4362,454,0 chrXIII 85411 . T A 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.139;QD=22.42;ReadPosRankSum=0.546;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3274,328,0 chrXIII 85721 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.28;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2687,270,0 chrXIII 86212 . C T 4835.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4835,478,0 chrXIII 86512 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.05;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4741,475,0 chrXIII 86779 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.183;QD=22.69;ReadPosRankSum=2.839;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2166,228,0 chrXIII 86816 . T A 1295 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1328,135,0 chrXIII 86906 . C T 490 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.15;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:54:523,54,0 chrXIII 87110 . C T 1255 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1288,129,0 chrXIII 87318 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.926;QD=24.55;ReadPosRankSum=1.689;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3903,403,0 chrXIII 87357 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.063;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.230;QD=21.49;ReadPosRankSum=1.690;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3588,361,0 chrXIII 87360 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=165;Dels=0.00;FS=3.009;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.625;QD=20.25;ReadPosRankSum=2.419;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,159:165:99:3342,357,0 chrXIII 87448 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=6.479;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.798;QD=23.01;ReadPosRankSum=2.405;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3819,391,0 chrXIII 87584 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.83;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4158,415,0 chrXIII 87741 . G C 2637 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2670,282,0 chrXIII 87907 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.79;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1890,186,0 chrXIII 88106 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.791;QD=23.59;ReadPosRankSum=1.689;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1944,201,0 chrXIII 88125 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.304;QD=21.74;ReadPosRankSum=1.689;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1794,183,0 chrXIII 88188 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.34;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2017,207,0 chrXIII 88266 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.696;QD=24.93;ReadPosRankSum=1.700;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2700,279,0 chrXIII 88377 . T C 2929 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.82;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2962,303,0 chrXIII 88443 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=4.8165;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.474;QD=24.56;ReadPosRankSum=1.703;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3029,327,0 chrXIII 88542 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.545;HaplotypeScore=6.5191;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.657;QD=25.04;ReadPosRankSum=1.707;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3455,352,0 chrXIII 88764 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.732;QD=22.93;ReadPosRankSum=1.658;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2188,225,0 chrXIII 88791 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5687;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.72;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2123,210,0 chrXIII 88808 . A T 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.895;QD=22.00;ReadPosRankSum=1.618;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2035,198,0 chrXIII 89001 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3565;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=27.53;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2153,213,0 chrXIII 89054 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=1.577;QD=21.07;ReadPosRankSum=1.681;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1445,147,0 chrXIII 89059 . T G 1433 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.05;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1466,150,0 chrXIII 89247 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.22;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1748,180,0 chrXIII 89321 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=3.026;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.026;QD=22.78;ReadPosRankSum=2.401;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2357,243,0 chrXIII 89325 . A C 2389 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.33;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2422,249,0 chrXIII 89556 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=122;Dels=0.00;FS=3.315;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.174;QD=23.16;ReadPosRankSum=1.556;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2858,306,0 chrXIII 89571 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=6.198;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.050;QD=24.51;ReadPosRankSum=2.370;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3097,318,0 chrXIII 89649 . T A 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0873;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.579;QD=26.58;ReadPosRankSum=1.707;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3615,364,0 chrXIII 89806 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9820;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.37;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2627,264,0 chrXIII 89860 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.27;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2964,292,0 chrXIII 89876 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8816;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.19;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2653,270,0 chrXIII 90409 . G A 5784.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.9115;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.26;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5784,592,0 chrXIII 90773 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.134;QD=24.82;ReadPosRankSum=2.401;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2540,255,0 chrXIII 90833 . G C 1149 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.68;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1182,123,0 chrXIII 91086 . A G 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=168;Dels=0.00;FS=5.793;HaplotypeScore=14.9790;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.425;QD=26.44;ReadPosRankSum=1.691;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4442,457,0 chrXIII 91149 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.43;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4348,436,0 chrXIII 91448 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3246,345,0 chrXIII 91485 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.67;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2542,255,0 chrXIII 91532 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=24.45;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3260,345,0 chrXIII 91587 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=26.15;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4210,412,0 chrXIII 91667 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=5.119;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-1.563;QD=23.54;ReadPosRankSum=1.684;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3366,351,0 chrXIII 91733 . G C 1928 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=13.97;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1961,198,0 chrXIII 91890 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.9043;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=23.40;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3533,369,0 chrXIII 91960 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=24.13;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2856,286,0 chrXIII 92531 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.7789;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.35;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4132,418,0 chrXIII 93860 . G A 6044.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:6044,622,0 chrXIII 93961 . A G 5939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=263;Dels=0.00;FS=9.033;HaplotypeScore=7.2820;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.030;QD=22.58;ReadPosRankSum=3.348;SB=-3.488e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:5939,613,0 chrXIII 93980 . T C 5982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.757;DP=283;Dels=0.00;FS=16.252;HaplotypeScore=9.7430;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.286;QD=21.14;ReadPosRankSum=3.790;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:5,276:283:99:5982,637,0 chrXIII 94055 . T C 5703.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.12;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5703,586,0 chrXIII 94190 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.77;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3156,339,0 chrXIII 94338 . T A 125.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=8.35;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:158,15,0 chrXIII 94394 . T A 816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.474;QD=22.05;ReadPosRankSum=2.810;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:3,34:37:87:849,87,0 chrXIII 94572 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.44;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3596,376,0 chrXIII 94695 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.0835;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4955,493,0 chrXIII 94812 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.96;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4049,403,0 chrXIII 94898 . G C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.50;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:99:3504,361,0 chrXIII 95277 . A C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=2.708;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.221;QD=22.83;ReadPosRankSum=2.308;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3252,351,0 chrXIII 95284 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.097;QD=22.47;ReadPosRankSum=2.379;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3179,330,0 chrXIII 95343 . A C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.068;QD=21.50;ReadPosRankSum=1.661;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3193,345,0 chrXIII 95482 . A C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2896;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.077;QD=23.92;ReadPosRankSum=1.685;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1803,186,0 chrXIII 95529 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.17;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1580,153,0 chrXIII 95780 . A G 989 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=27.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1022,105,0 chrXIII 95911 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2913,292,0 chrXIII 96019 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.07;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3582,355,0 chrXIII 96022 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.65;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3387,351,0 chrXIII 96832 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.251;HaplotypeScore=12.1057;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.123;QD=23.47;ReadPosRankSum=1.711;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3920,414,0 chrXIII 96883 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=4.746;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.020;QD=24.93;ReadPosRankSum=1.712;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4263,456,0 chrXIII 97415 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=4.349;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.343;QD=24.39;ReadPosRankSum=1.697;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2448,252,0 chrXIII 97548 . T C 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7222;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.509;QD=22.76;ReadPosRankSum=2.331;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2400,252,0 chrXIII 97600 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.04;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1396,147,0 chrXIII 97656 . T G 1570 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=19.3590;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.87;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1603,165,0 chrXIII 97705 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.65;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1723,171,0 chrXIII 97761 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.01;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1756,177,0 chrXIII 97775 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.12;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1352,135,0 chrXIII 97791 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=20.59;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1289,135,0 chrXIII 98070 . G A 5188.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.61;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5188,517,0 chrXIII 98310 . T C 5692.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.5811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5692,610,0 chrXIII 98766 . G A 6136.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.89;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:6136,601,0 chrXIII 98939 . A G 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=3.390;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.299;QD=24.32;ReadPosRankSum=1.681;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4936,508,0 chrXIII 99579 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1209;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=18.11;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:993,99,0 chrXIII 99586 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=5.763;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.389;QD=17.02;ReadPosRankSum=1.662;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:90:884,90,0 chrXIII 99676 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.88;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1252,123,0 chrXIII 99717 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1924,192,0 chrXIII 99880 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9791;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.93;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3689,385,0 chrXIII 100054 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.653;DP=199;Dels=0.00;FS=16.536;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.932;QD=22.86;ReadPosRankSum=3.708;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:5,194:199:99:4550,475,0 chrXIII 100124 . G A 5304.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.6742;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.11;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5304,520,0 chrXIII 100532 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.277;QD=22.31;ReadPosRankSum=1.683;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:4820,508,0 chrXIII 100551 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.84;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4815,478,0 chrXIII 100694 . T C 5853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.852;DP=248;Dels=0.00;FS=2.048;HaplotypeScore=22.8985;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.316;QD=23.60;ReadPosRankSum=2.064;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:4,243:248:99:5853,619,0 chrXIII 100803 . G C 7016.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.78;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,293:295:99:7016,715,0 chrXIII 101267 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=28.05;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4151,409,0 chrXIII 101298 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.2701;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.04;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3943,417,0 chrXIII 101353 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4114;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.01;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3958,400,0 chrXIII 101365 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1644;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.42;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4216,406,0 chrXIII 101469 . A T 5976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.991;DP=266;Dels=0.00;FS=14.507;HaplotypeScore=26.6397;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.840;QD=22.47;ReadPosRankSum=4.055;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:6,260:266:99:5976,610,0 chrXIII 101681 . T C 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=240;Dels=0.00;FS=3.747;HaplotypeScore=11.0537;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.227;QD=22.85;ReadPosRankSum=1.717;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5485,589,0 chrXIII 101716 . T C 5421.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=18.1922;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5421,574,0 chrXIII 101856 . T C 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.931;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.109;QD=24.49;ReadPosRankSum=1.713;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4359,460,0 chrXIII 102104 . C G 5361.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.6893;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.15;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5361,579,0 chrXIII 102269 . A G 5383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.551;QD=24.36;ReadPosRankSum=1.716;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5383,562,0 chrXIII 102554 . C T 5810.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.8156;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.41;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5810,571,0 chrXIII 102605 . A G 6059.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:6059,619,0 chrXIII 102686 . G A 5880.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.6303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.02;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5880,592,0 chrXIII 103133 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.907;QD=26.79;ReadPosRankSum=1.622;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3375,351,0 chrXIII 103222 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.52;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3991,391,0 chrXIII 103361 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.179;QD=25.28;ReadPosRankSum=1.671;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4323,442,0 chrXIII 104510 . T G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.046;QD=20.33;ReadPosRankSum=0.638;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3143,336,0 chrXIII 104516 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.034;QD=19.44;ReadPosRankSum=1.687;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3026,318,0 chrXIII 104772 . C T 5390.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.9577;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.55;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5390,532,0 chrXIII 105255 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.495;QD=24.27;ReadPosRankSum=1.685;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3567,375,0 chrXIII 105300 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8870;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.41;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3837,379,0 chrXIII 105326 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.66;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3699,373,0 chrXIII 105355 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.19;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3757,399,0 chrXIII 105406 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.59;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3756,376,0 chrXIII 105409 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.660;QD=20.36;ReadPosRankSum=1.656;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3685,379,0 chrXIII 105707 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.8023;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.28;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4725,502,0 chrXIII 106249 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.62;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3434,358,0 chrXIII 106723 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1588,159,0 chrXIII 107083 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.51;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3926,409,0 chrXIII 107242 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.05;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2823,283,0 chrXIII 107248 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.67;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2845,280,0 chrXIII 107332 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.60;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3405,352,0 chrXIII 107365 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=129;Dels=0.00;FS=2.797;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.107;QD=24.81;ReadPosRankSum=2.354;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3234,334,0 chrXIII 107533 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.76;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3969,385,0 chrXIII 107666 . T G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=170;Dels=0.00;FS=2.735;HaplotypeScore=10.7284;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.752;QD=25.01;ReadPosRankSum=2.377;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4251,453,0 chrXIII 107914 . C T 6400.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.7921;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.12;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:6400,625,0 chrXIII 107957 . C T 5769.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.0492;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.34;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5769,586,0 chrXIII 108668 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4919;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.441;QD=23.95;ReadPosRankSum=1.703;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2907,306,0 chrXIII 108789 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5213,547,0 chrXIII 108901 . C T 5988.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.1960;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.10;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5988,601,0 chrXIII 109270 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3643,373,0 chrXIII 109435 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.231;HaplotypeScore=8.6851;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.479;QD=24.15;ReadPosRankSum=1.708;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3453,361,0 chrXIII 109584 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.83;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4004,400,0 chrXIII 109647 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.98;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3722,388,0 chrXIII 109858 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.35;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3621,358,0 chrXIII 109860 . C A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.55;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3586,352,0 chrXIII 110039 . T C 3170 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6193;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=25.36;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3203,330,0 chrXIII 110068 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.79;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2822,288,0 chrXIII 110077 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=128;Dels=0.00;FS=2.553;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.516;QD=20.36;ReadPosRankSum=2.945;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2639,279,0 chrXIII 110109 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.91;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2751,276,0 chrXIII 110245 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=27.20;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3563,352,0 chrXIII 110807 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.30;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:3046,310,0 chrXIII 111621 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0860;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.36;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3459,352,0 chrXIII 111909 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3497,364,0 chrXIII 112670 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.404;QD=25.62;ReadPosRankSum=1.712;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4355,445,0 chrXIII 112836 . T C 6537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.856;QD=24.12;ReadPosRankSum=1.693;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:1,268:271:99:6537,685,0 chrXIII 113091 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.81;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4878,487,0 chrXIII 113575 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.160;QD=25.31;ReadPosRankSum=1.705;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3290,342,0 chrXIII 113641 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.79;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3379,346,0 chrXIII 114304 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=150;Dels=0.00;FS=5.566;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.899;QD=21.47;ReadPosRankSum=2.831;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3253,333,0 chrXIII 114310 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.32;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3326,340,0 chrXIII 114535 . C T 5582.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=25.84;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5582,553,0 chrXIII 114553 . C T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.76;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5150,511,0 chrXIII 114657 . C T 5861.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.05;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5861,586,0 chrXIII 114963 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.74;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4608,451,0 chrXIII 115183 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.6128;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.46;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4059,424,0 chrXIII 115471 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.8688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.854;QD=24.16;ReadPosRankSum=0.707;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3431,346,0 chrXIII 115959 . C T 6610.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=20.5974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6610,670,0 chrXIII 116112 . A G 6242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=277;Dels=0.00;FS=2.944;HaplotypeScore=23.6548;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.547;QD=22.53;ReadPosRankSum=2.423;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:2,274:276:99:6242,670,0 chrXIII 116448 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.29;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3311,334,0 chrXIII 117294 . T C 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=210;Dels=0.00;FS=3.449;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.200;QD=26.05;ReadPosRankSum=1.715;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5470,568,0 chrXIII 117342 . C T 4872.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.61;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4872,499,0 chrXIII 117501 . G C 4739.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.30;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4739,507,0 chrXIII 117651 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.510;QD=23.87;ReadPosRankSum=1.695;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4463,477,0 chrXIII 118473 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.231;QD=24.50;ReadPosRankSum=1.713;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4459,474,0 chrXIII 118891 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2584,261,0 chrXIII 118921 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.50;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2924,283,0 chrXIII 119087 . A C 2113 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.41;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2146,228,0 chrXIII 119306 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.98;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3175,336,0 chrXIII 119467 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=3.376;HaplotypeScore=4.7609;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.715;QD=19.93;ReadPosRankSum=1.697;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3946,412,0 chrXIII 119476 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.07;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4298,430,0 chrXIII 119630 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.68;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4674,463,0 chrXIII 120287 . G A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8695;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.29;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:5008,505,0 chrXIII 120376 . C T 5439.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.29;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5439,582,0 chrXIII 120947 . A G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=2.571;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.068;QD=23.38;ReadPosRankSum=2.334;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4489,457,0 chrXIII 120995 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3775,376,0 chrXIII 121387 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3379,352,0 chrXIII 121603 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3973,409,0 chrXIII 121847 . G A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.082;QD=24.69;ReadPosRankSum=-0.220;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3193,333,0 chrXIII 121948 . G C 1776 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=15.18;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1809,186,0 chrXIII 121951 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=14.42;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1735,186,0 chrXIII 121965 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-0.723;QD=14.05;ReadPosRankSum=1.678;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1817,189,0 chrXIII 122094 . G T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=26.77;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4096,406,0 chrXIII 122176 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=4.035;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.827;QD=24.94;ReadPosRankSum=1.688;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3916,406,0 chrXIII 122193 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=156;Dels=0.00;FS=12.951;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=1.890;QD=23.89;ReadPosRankSum=2.916;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3727,391,0 chrXIII 122298 . G T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.67;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3728,385,0 chrXIII 122317 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.1073;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.57;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4602,454,0 chrXIII 122362 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.332;DP=189;Dels=0.00;FS=3.199;HaplotypeScore=11.2774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.626;QD=25.33;ReadPosRankSum=-0.553;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4787,457,0 chrXIII 122837 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=17.19;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1649,168,0 chrXIII 123828 . G A 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=-0.067;QD=22.95;ReadPosRankSum=0.765;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2993,318,0 chrXIII 123833 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=24.87;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3166,321,0 chrXIII 123850 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=21.45;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2629,270,0 chrXIII 123855 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=20.70;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2579,267,0 chrXIII 124000 . T A 3188 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.18;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3221,342,0 chrXIII 124027 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=19.14;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2943,303,0 chrXIII 124036 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=123.1658;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=16.72;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2574,273,0 chrXIII 124045 . G T 49.97 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=134.3031;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=0.34;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:9:82,9,0 chrXIII 124113 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=169;Dels=0.00;FS=7.394;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.051;QD=22.39;ReadPosRankSum=2.406;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3784,402,0 chrXIII 124135 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3931;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=25.66;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4259,424,0 chrXIII 124216 . C A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=26.24;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:5011,493,0 chrXIII 124283 . C G 4181.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=23.36;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4181,453,0 chrXIII 124309 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=3.671;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.712;QD=23.84;ReadPosRankSum=1.711;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3934,409,0 chrXIII 124356 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=18.08;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2275,234,0 chrXIII 124357 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.856;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-0.069;QD=17.75;ReadPosRankSum=2.350;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2234,234,0 chrXIII 124406 . C G 1093 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=8.96;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:1126,117,0 chrXIII 124408 . C G 1187 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=10.06;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1220,129,0 chrXIII 124455 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=11.62;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1346,141,0 chrXIII 124497 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-0.899;QD=21.13;ReadPosRankSum=1.688;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1702,177,0 chrXIII 124499 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=21.20;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1750,177,0 chrXIII 124576 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=21.46;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:870,87,0 chrXIII 124675 . T C 1133 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.18;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1166,120,0 chrXIII 124697 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.78;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1341,135,0 chrXIII 124777 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.81;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2511,249,0 chrXIII 124802 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.05;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2678,262,0 chrXIII 124844 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.56;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2794,277,0 chrXIII 124877 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.09;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2969,303,0 chrXIII 125006 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.0318;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.04;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4516,466,0 chrXIII 125244 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1037;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.693;QD=23.58;ReadPosRankSum=1.712;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4009,415,0 chrXIII 125640 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.84;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4943,505,0 chrXIII 125677 . T G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.182;HaplotypeScore=12.6527;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.488;QD=24.20;ReadPosRankSum=1.675;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4405,460,0 chrXIII 125874 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=181;Dels=0.00;FS=5.949;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.261;QD=20.08;ReadPosRankSum=2.939;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3635,370,0 chrXIII 125883 . A T 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=3.830;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=1.062;QD=21.45;ReadPosRankSum=1.658;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3990,403,0 chrXIII 126281 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3667,364,0 chrXIII 126625 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.98;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3135,316,0 chrXIII 126663 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.00;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3375,337,0 chrXIII 127093 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3572,381,0 chrXIII 127429 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.8069;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.14;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4073,427,0 chrXIII 127550 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=19.4606;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.38;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3558,361,0 chrXIII 127589 . A T 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.700;QD=26.68;ReadPosRankSum=1.709;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:4029,397,0 chrXIII 128432 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.33;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4503,469,0 chrXIII 128498 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7109;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.22;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3972,397,0 chrXIII 128877 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=8.349;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.229;QD=25.17;ReadPosRankSum=2.398;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3600,370,0 chrXIII 129009 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=160;Dels=0.00;FS=3.291;HaplotypeScore=8.9570;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.758;QD=26.17;ReadPosRankSum=-0.260;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4187,383,0 chrXIII 129083 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.47;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4687,466,0 chrXIII 129400 . T G 4616.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.82;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4616,475,0 chrXIII 129456 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.5341;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.76;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5256,544,0 chrXIII 129926 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.27;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4144,430,0 chrXIII 130073 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=143;Dels=0.00;FS=3.010;HaplotypeScore=11.9575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.113;QD=25.23;ReadPosRankSum=2.415;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3608,367,0 chrXIII 130218 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=176;Dels=0.00;FS=3.061;HaplotypeScore=13.4380;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.876;QD=21.95;ReadPosRankSum=1.672;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3863,379,0 chrXIII 130360 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.08;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3351,334,0 chrXIII 130721 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=7.094;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=23.82;ReadPosRankSum=2.352;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3597,387,0 chrXIII 131093 . C G 4858.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.24;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4858,496,0 chrXIII 131106 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=6.763;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.006;QD=22.53;ReadPosRankSum=2.389;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4574,472,0 chrXIII 131349 . G T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.23;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3344,334,0 chrXIII 131365 . T A 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.348;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.190;QD=23.49;ReadPosRankSum=1.661;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3476,340,0 chrXIII 131423 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.42;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3934,414,0 chrXIII 131647 . G C 2816 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2849,297,0 chrXIII 131930 . A T 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=104;Dels=0.00;FS=5.712;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.186;QD=24.89;ReadPosRankSum=2.932;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,100:104:99:2622,256,0 chrXIII 132028 . A T 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=-0.638;QD=23.09;ReadPosRankSum=1.696;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2227,219,0 chrXIII 132039 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=21.69;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2115,210,0 chrXIII 132061 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=-0.139;QD=18.96;ReadPosRankSum=1.697;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1929,198,0 chrXIII 132065 . G T 1955 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=20.36;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1988,195,0 chrXIII 132088 . T C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.509;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.188;QD=16.61;ReadPosRankSum=1.690;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1412,147,0 chrXIII 132350 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.31;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4452,442,0 chrXIII 132409 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3320,351,0 chrXIII 132552 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=24.71;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4645,457,0 chrXIII 132728 . C T 1210 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=11.00;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1243,123,0 chrXIII 132734 . T A 1229 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=10.07;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1262,126,0 chrXIII 132736 . C G 1341 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=10.81;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1374,144,0 chrXIII 132741 . T C 1463 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=10.92;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1496,153,0 chrXIII 132751 . C A 1572 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=11.56;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1605,162,0 chrXIII 132818 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.35;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2382,246,0 chrXIII 132842 . C G 2540 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=23.96;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2573,258,0 chrXIII 132856 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=23.39;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2676,265,0 chrXIII 132910 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=25.01;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2759,279,0 chrXIII 133001 . A T 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.420;QD=25.83;ReadPosRankSum=1.663;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2616,273,0 chrXIII 133099 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.8884;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.939;QD=25.35;ReadPosRankSum=1.731;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3904,403,0 chrXIII 133212 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=136;Dels=0.00;FS=2.799;HaplotypeScore=10.4311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.688;QD=25.49;ReadPosRankSum=2.413;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3466,358,0 chrXIII 133405 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.027;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.536;QD=24.40;ReadPosRankSum=1.657;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3391,346,0 chrXIII 133436 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.632;QD=22.85;ReadPosRankSum=1.682;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3209,325,0 chrXIII 133555 . G T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3835,376,0 chrXIII 133610 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.83;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3600,370,0 chrXIII 133858 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.2250;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.99;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4759,516,0 chrXIII 134620 . C T 7469.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=12.6409;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.49;SB=-4.202e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7469,745,0 chrXIII 135169 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.343;QD=22.56;ReadPosRankSum=1.697;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2244,225,0 chrXIII 135233 . C A 1539 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.32;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1572,156,0 chrXIII 135252 . T C 980 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.85;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1013,105,0 chrXIII 135343 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=26.74;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2306,237,0 chrXIII 135387 . G A 1979 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.56;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2012,198,0 chrXIII 135401 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4948;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.02;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1745,174,0 chrXIII 135470 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.33;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2623,255,0 chrXIII 136477 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2386;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.30;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4241,439,0 chrXIII 136675 . A G 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=202;Dels=0.00;FS=11.113;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.271;QD=25.90;ReadPosRankSum=2.413;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:5231,532,0 chrXIII 136702 . T G 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.6292;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.664;QD=23.69;ReadPosRankSum=2.425;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4762,507,0 chrXIII 136948 . A G 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.733;QD=25.69;ReadPosRankSum=1.665;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5370,565,0 chrXIII 137116 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=7.236;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.996;QD=23.83;ReadPosRankSum=1.705;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3107,327,0 chrXIII 137286 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.66;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2086,207,0 chrXIII 137451 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=28.19;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3411,340,0 chrXIII 137475 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=25.98;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3047,298,0 chrXIII 137716 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.06;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2623,256,0 chrXIII 137717 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=21.50;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2656,262,0 chrXIII 137768 . C A 3052 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.21;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3085,313,0 chrXIII 137796 . C A 3102 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.27;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3135,322,0 chrXIII 137804 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=6.412;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-1.138;QD=19.94;ReadPosRankSum=2.416;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2984,318,0 chrXIII 137879 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.39;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3550,352,0 chrXIII 137883 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.654;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-1.255;QD=20.71;ReadPosRankSum=-1.068;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3458,357,0 chrXIII 138042 . A G 5531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=6.915;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.491;QD=26.34;ReadPosRankSum=2.414;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5531,559,0 chrXIII 138467 . A G 5318.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5318,541,0 chrXIII 138823 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.2160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3899,397,0 chrXIII 138914 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.92;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3581,367,0 chrXIII 139013 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4017,409,0 chrXIII 139632 . C T 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.602;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.031;QD=23.79;ReadPosRankSum=1.134;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2650,264,0 chrXIII 139664 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=3.040;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.439;QD=21.07;ReadPosRankSum=2.300;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2456,249,0 chrXIII 140137 . T A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=122;Dels=0.02;FS=3.010;HaplotypeScore=109.3455;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.279;QD=0.24;ReadPosRankSum=2.388;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:6:61,6,0 chrXIII 140171 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.15;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2025,204,0 chrXIII 140328 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.54;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3046,307,0 chrXIII 140395 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.1208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.77;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3814,391,0 chrXIII 140757 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.31;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4683,481,0 chrXIII 140935 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=196;Dels=0.00;FS=6.060;HaplotypeScore=17.7994;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.120;QD=21.92;ReadPosRankSum=2.891;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,190:196:99:4296,459,0 chrXIII 140970 . A G 4879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.5954;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.683;QD=22.91;ReadPosRankSum=1.716;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4879,493,0 chrXIII 141627 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.26;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1530,156,0 chrXIII 141877 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.0213;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.732;QD=24.17;ReadPosRankSum=1.664;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2498,255,0 chrXIII 141979 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=23.27;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3082,315,0 chrXIII 141982 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=23.91;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3094,307,0 chrXIII 142186 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-1.227;QD=21.25;ReadPosRankSum=1.640;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3241,342,0 chrXIII 142190 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=0.157;QD=22.65;ReadPosRankSum=1.687;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3510,366,0 chrXIII 142206 . T G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=6.807;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-1.133;QD=22.54;ReadPosRankSum=2.391;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3787,391,0 chrXIII 142395 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=27.62;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3949,391,0 chrXIII 142575 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.36;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3029,312,0 chrXIII 142704 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2808,282,0 chrXIII 142824 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.38;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4035,403,0 chrXIII 142984 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.38;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3754,388,0 chrXIII 143064 . A C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=215;Dels=0.00;FS=2.760;HaplotypeScore=10.0663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.646;QD=23.88;ReadPosRankSum=2.392;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5134,552,0 chrXIII 143356 . G T 2829 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.74;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2862,277,0 chrXIII 143613 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.87;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4654,466,0 chrXIII 144507 . C T 6775.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.00;SB=-3.369e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6775,688,0 chrXIII 144771 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.70;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3507,378,0 chrXIII 146198 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=128;Dels=0.00;FS=2.585;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.181;QD=26.14;ReadPosRankSum=2.945;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3346,340,0 chrXIII 147350 . T C 841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.630;QD=23.36;ReadPosRankSum=2.805;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,33:36:93:874,93,0 chrXIII 148721 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2924,289,0 chrXIII 149072 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=7.633;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.180;QD=25.39;ReadPosRankSum=2.385;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3860,397,0 chrXIII 149583 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.5608;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.567;QD=20.62;ReadPosRankSum=1.701;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4681,496,0 chrXIII 150480 . A T 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=191;Dels=0.00;FS=6.758;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.357;QD=24.64;ReadPosRankSum=2.424;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4706,484,0 chrXIII 151033 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.100;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.049;QD=23.70;ReadPosRankSum=1.685;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3531,361,0 chrXIII 151191 . A T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.61;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3646,358,0 chrXIII 151234 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=3.024;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.694;QD=23.84;ReadPosRankSum=2.349;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3552,370,0 chrXIII 151733 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=7.817;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.104;QD=28.19;ReadPosRankSum=2.378;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3862,394,0 chrXIII 154266 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4026,412,0 chrXIII 155649 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4116,409,0 chrXIII 156283 . T C 5072.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.99;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5072,541,0 chrXIII 156894 . A T 5817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=5.514;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.033;QD=27.70;ReadPosRankSum=1.716;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:5817,583,0 chrXIII 159532 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.68;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3979,417,0 chrXIII 159727 . T C 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.135;QD=19.94;ReadPosRankSum=2.131;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:2,60:63:99:1289,129,0 chrXIII 159728 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.32;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1313,132,0 chrXIII 159757 . T G 1352 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.80;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1385,147,0 chrXIII 159950 . A T 2351 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2384,243,0 chrXIII 160000 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.23;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2079,210,0 chrXIII 160037 . C A 1500 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1533,162,0 chrXIII 160146 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.43;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4397,463,0 chrXIII 160611 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.60;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3975,412,0 chrXIII 160665 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.46;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2894,292,0 chrXIII 160704 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.8389;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.33;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2856,291,0 chrXIII 160785 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.75;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4274,424,0 chrXIII 160953 . C G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.77;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4255,453,0 chrXIII 161085 . T C 6141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.5377;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.454;QD=24.66;ReadPosRankSum=1.718;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:6141,649,0 chrXIII 161370 . T A 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=203;Dels=0.00;FS=4.562;HaplotypeScore=12.7079;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.879;QD=20.74;ReadPosRankSum=1.664;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4210,427,0 chrXIII 161385 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.12;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3561,349,0 chrXIII 161406 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.82;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3252,342,0 chrXIII 161572 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6599;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.18;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3399,346,0 chrXIII 161922 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.89;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2846,285,0 chrXIII 162035 . G C 2960 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.67;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2993,312,0 chrXIII 162123 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2772,288,0 chrXIII 162309 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.44;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3613,373,0 chrXIII 162461 . A G 7143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=275;Dels=0.00;FS=11.318;HaplotypeScore=20.2321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.231;QD=25.97;ReadPosRankSum=2.431;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,270:275:99:7143,727,0 chrXIII 162681 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=20.94;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4586,466,0 chrXIII 162716 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=20.7072;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-0.680;QD=16.50;ReadPosRankSum=1.711;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2805,297,0 chrXIII 162731 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6167;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=14.98;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1980,210,0 chrXIII 162755 . A G 944 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=12.26;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:977,102,0 chrXIII 162758 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=13.31;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:965,99,0 chrXIII 162770 . C G 326 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=9.59;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:39:359,39,0 chrXIII 162775 . A T 198.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;MQRankSum=-0.863;QD=10.42;ReadPosRankSum=2.192;SB=-7.804e+01 GT:AD:DP:GQ:PL 1/1:2,17:19:24:231,24,0 chrXIII 162776 . A T 196.03 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=11.53;SB=-8.004e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:24:229,24,0 chrXIII 162833 . T C 202.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=18.37;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:235,24,0 chrXIII 162840 . G A 248 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=15.50;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:281,30,0 chrXIII 162854 . A G 424 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=10.34;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:51:457,51,0 chrXIII 162859 . T C 447 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=1.155;QD=9.31;ReadPosRankSum=1.660;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:51:480,51,0 chrXIII 162865 . A G 587 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=10.67;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:69:620,69,0 chrXIII 162867 . T C 651 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=-1.299;QD=11.62;ReadPosRankSum=1.670;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:684,72,0 chrXIII 162876 . G C 700 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=10.00;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:733,78,0 chrXIII 162878 . T C 702 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=2.906;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=1.148;QD=9.75;ReadPosRankSum=2.381;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:78:735,78,0 chrXIII 162884 . A G 754 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=8.98;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:84:787,84,0 chrXIII 162886 . T C 756 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=2.653;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;MQRankSum=-0.354;QD=8.69;ReadPosRankSum=2.365;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:84:789,84,0 chrXIII 162890 . T C 790 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=7.90;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:87:823,87,0 chrXIII 162895 . T G 873 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=8.08;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:96:906,96,0 chrXIII 162907 . G C 1289 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=9.41;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,130:137:99:1322,144,0 chrXIII 163055 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=29.18;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3794,370,0 chrXIII 163283 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=26.32;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3192,330,0 chrXIII 163376 . A C 2707 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.19;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2740,288,0 chrXIII 163496 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.32;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2587,276,0 chrXIII 163519 . G C 2381 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.05;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2414,246,0 chrXIII 164021 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4087;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.67;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4364,433,0 chrXIII 164304 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.84;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2281,225,0 chrXIII 164532 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2144,222,0 chrXIII 164705 . C A 2715 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.0644;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.46;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2748,274,0 chrXIII 165032 . G T 3016 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3049,304,0 chrXIII 165218 . A G 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.838;QD=23.48;ReadPosRankSum=1.621;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1489,156,0 chrXIII 165482 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0400;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.91;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1104,114,0 chrXIII 166349 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.24;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4508,460,0 chrXIII 166364 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.35;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4135,435,0 chrXIII 166589 . A C 4317.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.10;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4317,457,0 chrXIII 166619 . G A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.80;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4539,451,0 chrXIII 166876 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.10;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4019,394,0 chrXIII 167027 . A T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4016,403,0 chrXIII 167521 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=25.38;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4593,460,0 chrXIII 167925 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-0.733;QD=21.24;ReadPosRankSum=1.711;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3462,366,0 chrXIII 167929 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=21.91;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3418,337,0 chrXIII 167959 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=132;Dels=0.00;FS=12.814;HaplotypeScore=117.6954;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;MQRankSum=-1.466;QD=17.50;ReadPosRankSum=2.886;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2343,240,0 chrXIII 167962 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=115.5826;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=17.16;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2332,240,0 chrXIII 168084 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8508;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=22.63;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2952,300,0 chrXIII 168134 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.03;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=21.70;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2246,225,0 chrXIII 168139 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=22.35;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2179,219,0 chrXIII 168229 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=0.962;QD=25.25;ReadPosRankSum=1.614;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2987,309,0 chrXIII 168709 . T C 135.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;MQRankSum=-1.732;QD=2.82;ReadPosRankSum=1.660;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,47:48:18:168,18,0 chrXIII 168722 . C A 395 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=6.93;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:45:428,45,0 chrXIII 168744 . T C 660 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=8.25;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:72:693,72,0 chrXIII 168750 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=8.92;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:78:747,78,0 chrXIII 168773 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=0;QD=11.37;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1011,105,0 chrXIII 168774 . T G 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;MQRankSum=-1.613;QD=11.11;ReadPosRankSum=1.692;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1000,105,0 chrXIII 168838 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=24.08;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1935,189,0 chrXIII 169412 . T G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=157;Dels=0.00;FS=6.759;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.923;QD=22.42;ReadPosRankSum=2.418;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3520,372,0 chrXIII 169495 . T C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=155;Dels=0.00;FS=4.961;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.513;QD=9.82;ReadPosRankSum=2.861;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:1555,188,0 chrXIII 169765 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7185;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.159;QD=23.19;ReadPosRankSum=2.333;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1981,207,0 chrXIII 169803 . C A 1665 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=64.4004;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.08;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1698,171,0 chrXIII 170104 . G A 5120.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=27.83;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:5120,502,0 chrXIII 170221 . C T 5044.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.4663;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.72;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5044,508,0 chrXIII 170633 . A G 5203.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.01;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5203,532,0 chrXIII 170785 . T A 6373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.4888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.144;QD=25.19;ReadPosRankSum=1.705;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6373,631,0 chrXIII 172925 . C T 4560.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.98;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4560,454,0 chrXIII 173500 . T C 4784.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.57;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4784,508,0 chrXIII 179115 . T A 6643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=18.6417;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.090;QD=25.65;ReadPosRankSum=1.652;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:6643,667,0 chrXIII 179439 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.96;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3504,349,0 chrXIII 179511 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=4.812;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.784;QD=22.08;ReadPosRankSum=1.699;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2373,252,0 chrXIII 179588 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.875;QD=22.77;ReadPosRankSum=1.629;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2356,243,0 chrXIII 179677 . T A 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=3.062;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.937;QD=20.89;ReadPosRankSum=2.318;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1600,159,0 chrXIII 179713 . G C 896 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=11.49;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:96:929,96,0 chrXIII 179725 . T C 307.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=73;Dels=0.00;FS=16.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.92;MQ0=0;MQRankSum=0.582;QD=4.21;ReadPosRankSum=-3.934;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:47,26:73:99:337,0,762 chrXIII 179965 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:25:66:640,66,0 chrXIII 180101 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=27.38;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2579,256,0 chrXIII 180122 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.90;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2163,228,0 chrXIII 180733 . T G 2696 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.65;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2729,291,0 chrXIII 181019 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2822,288,0 chrXIII 181112 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.275;QD=21.13;ReadPosRankSum=1.694;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1977,201,0 chrXIII 181117 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.77;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2058,210,0 chrXIII 181539 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1539;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.01;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4249,442,0 chrXIII 181557 . A C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.004;QD=22.76;ReadPosRankSum=2.392;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3869,405,0 chrXIII 181905 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.60;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3340,331,0 chrXIII 181958 . C G 2460 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2493,264,0 chrXIII 182131 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.91;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3065,301,0 chrXIII 182493 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2169,222,0 chrXIII 182695 . A T 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.703;QD=25.85;ReadPosRankSum=1.698;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2644,264,0 chrXIII 183093 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3562,352,0 chrXIII 183207 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=19.43;ReadPosRankSum=2.263;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1568,159,0 chrXIII 183321 . T G 1361 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1394,144,0 chrXIII 183574 . A T 54.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:87,9,0 chrXIII 183601 . A G 291 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=24.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:12:33:324,33,0 chrXIII 183799 . T C 590 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=17.35;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:623,75,0 chrXIII 183800 . A T 593 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.94;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:626,75,0 chrXIII 183815 . T C 694 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=23.13;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:727,81,0 chrXIII 183816 . A C 687 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=22.90;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:720,81,0 chrXIII 183824 . G T 617 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=23.73;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:650,72,0 chrXIII 183876 . T C 318 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.20;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:36:351,36,0 chrXIII 183980 . G A 242 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=16.13;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:275,36,0 chrXIII 190087 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=1.81;SB=-1.655e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:12:105,12,0 chrXIII 190128 . G C 1476 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=19.68;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1509,156,0 chrXIII 190298 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=26.37;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4167,415,0 chrXIII 190628 . C T 5251.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.1890;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.25;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5251,526,0 chrXIII 190760 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.270;QD=24.10;ReadPosRankSum=1.655;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4362,454,0 chrXIII 190786 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=187;Dels=0.00;FS=2.940;HaplotypeScore=8.1632;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.034;QD=23.35;ReadPosRankSum=2.409;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4367,445,0 chrXIII 191033 . A C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.883;QD=22.90;ReadPosRankSum=1.710;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3549,384,0 chrXIII 191291 . A G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.144;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.297;QD=22.87;ReadPosRankSum=1.697;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2297,231,0 chrXIII 191314 . T G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.208;QD=20.77;ReadPosRankSum=1.663;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2110,213,0 chrXIII 191318 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.62;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2157,216,0 chrXIII 191452 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.43;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3347,348,0 chrXIII 191569 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.07;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2940,312,0 chrXIII 191792 . A T 1480 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.26;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1513,156,0 chrXIII 191837 . A G 801 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.65;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:834,87,0 chrXIII 191860 . G A 760 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:78:793,78,0 chrXIII 191863 . C T 718 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=24.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:78:751,78,0 chrXIII 191932 . A T 723 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.93;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:75:756,75,0 chrXIII 191956 . G C 491 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.46;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:54:524,54,0 chrXIII 192044 . C A 1110 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1143,126,0 chrXIII 192110 . T C 1002 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.676;QD=24.44;ReadPosRankSum=2.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,38:41:99:1035,108,0 chrXIII 192147 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=48.3158;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.89;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1203,123,0 chrXIII 192321 . T C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.849;QD=22.49;ReadPosRankSum=1.698;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2327,246,0 chrXIII 192372 . T C 3163 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=23.96;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3196,322,0 chrXIII 192396 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.30;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3704,373,0 chrXIII 192432 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.10;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2630,273,0 chrXIII 192436 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.60;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2620,270,0 chrXIII 192743 . G A 94.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.7702;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=6.28;SB=-3.224e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:127,15,0 chrXIII 193006 . C A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.1781;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.97;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4882,481,0 chrXIII 193083 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.061;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.571;QD=23.01;ReadPosRankSum=1.631;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3957,403,0 chrXIII 193159 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=166;Dels=0.00;FS=5.927;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.750;QD=25.77;ReadPosRankSum=2.775;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:4277,439,0 chrXIII 193709 . C A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.03;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4038,415,0 chrXIII 193723 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.35;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3805,382,0 chrXIII 193971 . A G 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.461;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.919;QD=22.98;ReadPosRankSum=1.716;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4918,523,0 chrXIII 194335 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.08;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3703,367,0 chrXIII 194436 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=171;Dels=0.00;FS=2.943;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=25.30;ReadPosRankSum=2.392;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4326,448,0 chrXIII 194614 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.298;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=25.04;ReadPosRankSum=2.398;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3606,364,0 chrXIII 195045 . C A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.26;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3624,358,0 chrXIII 195227 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=158;Dels=0.00;FS=10.928;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.671;QD=24.83;ReadPosRankSum=2.942;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3923,400,0 chrXIII 195282 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.707;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.289;QD=23.73;ReadPosRankSum=1.508;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2596,267,0 chrXIII 195330 . C A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.89;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3417,343,0 chrXIII 195360 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.57;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3955,403,0 chrXIII 195417 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=3.033;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.454;QD=20.90;ReadPosRankSum=2.345;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3449,363,0 chrXIII 195423 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.19;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3750,376,0 chrXIII 195744 . T C 2650 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.72;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2683,282,0 chrXIII 195860 . A T 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=0.067;QD=22.73;ReadPosRankSum=1.699;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2397,243,0 chrXIII 195862 . G T 2343 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=22.75;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2376,240,0 chrXIII 195938 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7123;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.85;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1534,156,0 chrXIII 195968 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=14.1753;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.11;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2439,246,0 chrXIII 195989 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.69;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3137,316,0 chrXIII 196113 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=3;QD=22.10;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2155,219,0 chrXIII 196123 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=97;Dels=0.00;FS=3.664;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=3;MQRankSum=-0.913;QD=21.70;ReadPosRankSum=1.695;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2138,219,0 chrXIII 196201 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=24.94;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3126,319,0 chrXIII 196246 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=25.68;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3115,313,0 chrXIII 202197 . T C 122.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=69;Dels=0.00;FS=5.557;HaplotypeScore=5.5631;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=-0.221;QD=1.77;ReadPosRankSum=0.868;SB=-1.441e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:18:155,18,0 chrXIII 202206 . T C 271 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.447;DP=73;Dels=0.00;FS=7.494;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=-1.115;QD=3.71;ReadPosRankSum=0.356;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:33:304,33,0 chrXIII 202207 . T A 279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.258;DP=73;Dels=0.00;FS=7.494;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=-1.020;QD=3.82;ReadPosRankSum=0.356;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:33:312,33,0 chrXIII 202222 . A C 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=5.306;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;MQRankSum=-0.492;QD=8.51;ReadPosRankSum=1.623;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,94:98:90:867,90,0 chrXIII 202482 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.58;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1630,165,0 chrXIII 202531 . T C 2051 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.42;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2084,219,0 chrXIII 203104 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4095,412,0 chrXIII 205923 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3599,370,0 chrXIII 207757 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=3.008;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.229;QD=23.30;ReadPosRankSum=2.418;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3658,382,0 chrXIII 209014 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.56;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:845,84,0 chrXIII 209233 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.41;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1709,171,0 chrXIII 209485 . A G 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=4.357;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.558;QD=26.12;ReadPosRankSum=1.694;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4754,484,0 chrXIII 212859 . T C 6651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.736;QD=25.98;ReadPosRankSum=2.411;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:6651,679,0 chrXIII 213955 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.61;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3652,379,0 chrXIII 213972 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.11;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3547,352,0 chrXIII 214086 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.91;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3931,388,0 chrXIII 214319 . T C 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=4.652;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.946;QD=23.18;ReadPosRankSum=1.684;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5076,538,0 chrXIII 214378 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=19.9706;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.45;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4737,484,0 chrXIII 215334 . T C 4801.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.7459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4801,502,0 chrXIII 215544 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4753,478,0 chrXIII 215595 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8179;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.057;QD=24.38;ReadPosRankSum=1.709;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3804,399,0 chrXIII 216027 . C T 5719.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.03;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5719,589,0 chrXIII 216492 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=196;Dels=0.00;FS=3.033;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.523;QD=23.74;ReadPosRankSum=2.374;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4653,469,0 chrXIII 217030 . T G 2566 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.21;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2599,267,0 chrXIII 218882 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=154;Dels=0.00;FS=3.185;HaplotypeScore=15.7619;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.345;QD=20.84;ReadPosRankSum=1.641;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3243,334,0 chrXIII 219326 . G A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4891;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.80;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4744,466,0 chrXIII 220290 . A G 7123.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=21.4678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-3.956e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:7123,730,0 chrXIII 220725 . A G 5562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.760;QD=23.67;ReadPosRankSum=2.366;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5562,574,0 chrXIII 220830 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:5178,511,0 chrXIII 220900 . G A 5483.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.38;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5483,583,0 chrXIII 221229 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2040,204,0 chrXIII 223396 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.131;QD=25.20;ReadPosRankSum=0.890;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3629,342,0 chrXIII 223427 . A T 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.004;DP=132;Dels=0.00;FS=7.539;HaplotypeScore=9.0046;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.278;QD=24.91;ReadPosRankSum=4.048;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:6,126:132:99:3288,325,0 chrXIII 223463 . T A 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=5.309;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.495;QD=24.66;ReadPosRankSum=1.708;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3601,358,0 chrXIII 223500 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0014;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3608,367,0 chrXIII 224221 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.81;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2843,280,0 chrXIII 224225 . T A 2801 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.15;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2834,280,0 chrXIII 224339 . A G 3075 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3108,321,0 chrXIII 224490 . G C 2490 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.49;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2523,273,0 chrXIII 225178 . T C 5717.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.19;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5717,595,0 chrXIII 225252 . A G 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.6745;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.075;QD=23.05;ReadPosRankSum=1.702;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5301,550,0 chrXIII 225259 . T C 5209.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.55;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5209,544,0 chrXIII 225309 . A T 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=225;Dels=0.00;FS=2.572;HaplotypeScore=18.5271;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.121;QD=21.12;ReadPosRankSum=2.969;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4751,496,0 chrXIII 225438 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=114;Dels=0.00;FS=8.456;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;MQRankSum=-1.034;QD=21.02;ReadPosRankSum=2.363;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2429,255,0 chrXIII 225447 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=22.27;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2460,243,0 chrXIII 225454 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=21.37;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2298,240,0 chrXIII 225572 . C T 1916 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=14.97;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1949,198,0 chrXIII 225581 . T C 809 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.513;DP=126;Dels=0.00;FS=10.264;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;MQRankSum=-2.020;QD=6.42;ReadPosRankSum=2.313;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:66:842,66,0 chrXIII 225582 . G T 866 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=6.87;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:899,117,0 chrXIII 225586 . G A 1351 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=9.72;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:1384,150,0 chrXIII 225614 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=17.47;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3091,307,0 chrXIII 225656 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=5.465;HaplotypeScore=9.1351;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.866;QD=22.62;ReadPosRankSum=1.693;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4003,415,0 chrXIII 225802 . C T 5003.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=25.02;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:5003,502,0 chrXIII 225831 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=210;Dels=0.00;FS=5.201;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=2.033;QD=22.44;ReadPosRankSum=3.377;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:4,205:210:99:4713,499,0 chrXIII 226024 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1566;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.88;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3986,394,0 chrXIII 226071 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=25.12;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3718,385,0 chrXIII 226093 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=27.57;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3557,352,0 chrXIII 226121 . C A 3163 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.27;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3196,319,0 chrXIII 226133 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.53;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3092,307,0 chrXIII 226181 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.54;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3676,367,0 chrXIII 226649 . T C 992 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=11;QD=16.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1025,108,0 chrXIII 226661 . T C 984 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=11;QD=16.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1017,111,0 chrXIII 226664 . C T 1121 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=11;QD=18.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1154,114,0 chrXIII 226822 . A T 528 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=27.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:57:561,57,0 chrXIII 226951 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.39;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1339,135,0 chrXIII 227065 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.15;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3112,324,0 chrXIII 227084 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.64;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3286,328,0 chrXIII 227257 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2337;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.79;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4358,433,0 chrXIII 227342 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.7867;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.65;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3760,382,0 chrXIII 227660 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=115;Dels=0.00;FS=4.096;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.518;QD=23.79;ReadPosRankSum=1.640;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2769,294,0 chrXIII 227957 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=24.85;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2493,252,0 chrXIII 227971 . G A 2575 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=25.25;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2608,261,0 chrXIII 227975 . T G 2438 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.778;QD=24.88;ReadPosRankSum=1.591;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2471,249,0 chrXIII 227978 . G A 2280 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=24.00;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2313,240,0 chrXIII 228065 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.73;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3198,325,0 chrXIII 228182 . A C 1491 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=16.57;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1524,183,0 chrXIII 228183 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.53;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1537,183,0 chrXIII 228217 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.46;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2565,255,0 chrXIII 228514 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4050,397,0 chrXIII 229206 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.1079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5487,541,0 chrXIII 229364 . A G 5404.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.29;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5404,553,0 chrXIII 229786 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.16;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3053,304,0 chrXIII 230652 . G A 6864.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.2863;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.52;SB=-3.620e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:6864,697,0 chrXIII 230823 . C T 4745.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.84;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4745,469,0 chrXIII 230928 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.054;QD=24.78;ReadPosRankSum=1.684;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3568,364,0 chrXIII 230942 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.14;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3525,364,0 chrXIII 230978 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.78;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3053,298,0 chrXIII 230996 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.18;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2722,273,0 chrXIII 231085 . A C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=28.02;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5071,505,0 chrXIII 231292 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4054,415,0 chrXIII 231382 . A G 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=182;Dels=0.00;FS=6.094;HaplotypeScore=8.0675;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.369;QD=21.29;ReadPosRankSum=2.950;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3874,408,0 chrXIII 231391 . A C 4257.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.64;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4257,451,0 chrXIII 231506 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.3915;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.76;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,139:145:99:3735,376,0 chrXIII 231733 . T G 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=215;Dels=0.00;FS=2.895;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=2.048;QD=24.48;ReadPosRankSum=2.358;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5263,565,0 chrXIII 232186 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.91;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3022,304,0 chrXIII 232414 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.690;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.466;QD=23.42;ReadPosRankSum=1.708;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3442,360,0 chrXIII 232427 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=2.835;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.679;QD=23.17;ReadPosRankSum=2.373;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3776,382,0 chrXIII 232662 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.85;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3840,391,0 chrXIII 232771 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=3.354;HaplotypeScore=12.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.273;QD=24.75;ReadPosRankSum=1.712;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4282,448,0 chrXIII 232832 . C T 4780.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.2056;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.43;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4780,478,0 chrXIII 232892 . A C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.661;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.482;QD=24.04;ReadPosRankSum=1.710;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3822,394,0 chrXIII 233147 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.846;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.088;QD=23.02;ReadPosRankSum=1.692;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2013,185,0 chrXIII 233569 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=3.168;HaplotypeScore=14.3404;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.031;QD=24.36;ReadPosRankSum=1.711;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4142,421,0 chrXIII 233610 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.86;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3804,370,0 chrXIII 233612 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.66;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3615,367,0 chrXIII 233723 . C A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.62;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4739,472,0 chrXIII 233936 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.8003;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.98;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3860,391,0 chrXIII 234329 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.87;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4297,424,0 chrXIII 234471 . T C 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=5.677;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.183;QD=22.79;ReadPosRankSum=1.691;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:2016,207,0 chrXIII 234542 . T A 1520 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.38;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1553,150,0 chrXIII 234544 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.65;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1437,144,0 chrXIII 234644 . A G 704 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=24.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:78:737,78,0 chrXIII 235023 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.119;QD=23.84;ReadPosRankSum=1.712;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4172,430,0 chrXIII 235111 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=206;Dels=0.00;FS=3.005;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.331;QD=23.75;ReadPosRankSum=2.413;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4893,502,0 chrXIII 235149 . T C 4910.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.9697;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.43;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4910,514,0 chrXIII 235288 . T C 6337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=254;Dels=0.00;FS=7.771;HaplotypeScore=21.3792;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.008;QD=24.95;ReadPosRankSum=3.381;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:5,249:254:99:6337,667,0 chrXIII 235377 . T C 6649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=277;Dels=0.00;FS=11.247;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.676;QD=24.00;ReadPosRankSum=2.975;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:3,274:277:99:6649,685,0 chrXIII 235419 . C T 7898.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=16.9158;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.60;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,321:321:99:7898,782,0 chrXIII 235455 . G A 5450.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=13.4081;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=16.42;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,324:331:99:5450,612,0 chrXIII 235460 . A G 5660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.527;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=25.8308;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.781;QD=17.00;ReadPosRankSum=4.366;SB=-4.090e+03 GT:AD:DP:GQ:PL 1/1:9,321:333:99:5660,618,0 chrXIII 235548 . T A 8367.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.31;SB=-3.858e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:8367,821,0 chrXIII 235740 . A G 5555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.256;QD=22.67;ReadPosRankSum=1.718;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5555,568,0 chrXIII 235798 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4806,472,0 chrXIII 236124 . G C 2349 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=27.00;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2382,249,0 chrXIII 236156 . A G 2136 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=26.70;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2169,222,0 chrXIII 236312 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=24.59;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2394,240,0 chrXIII 236318 . A C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=3.008;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.321;QD=23.23;ReadPosRankSum=2.347;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2263,231,0 chrXIII 236370 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=15.90;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1591,156,0 chrXIII 236387 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=16.14;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1566,153,0 chrXIII 236390 . C A 1519 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=15.66;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1552,156,0 chrXIII 236398 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=13.10;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1330,135,0 chrXIII 236403 . T A 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;MQRankSum=-0.601;QD=13.71;ReadPosRankSum=1.661;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1377,135,0 chrXIII 236833 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=27.30;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:3009,301,0 chrXIII 237159 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3936,423,0 chrXIII 237194 . A T 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.232;QD=24.38;ReadPosRankSum=1.688;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3827,373,0 chrXIII 237477 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.45;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3843,400,0 chrXIII 237965 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=3.120;HaplotypeScore=19.4901;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.181;QD=25.35;ReadPosRankSum=1.680;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5096,523,0 chrXIII 238236 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=22.31;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2175,231,0 chrXIII 238290 . T C 1439 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=20.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1472,150,0 chrXIII 238291 . G A 1465 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=22.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1498,153,0 chrXIII 238380 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.41;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:78:693,78,0 chrXIII 238422 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.22;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1486,150,0 chrXIII 238751 . A G 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.071;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=24.5482;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.458;QD=14.82;ReadPosRankSum=2.387;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:2,78:82:99:1248,132,0 chrXIII 238939 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.29;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:929,96,0 chrXIII 239384 . A G 443 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=4.52;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:51:476,51,0 chrXIII 239557 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=27.78;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3611,355,0 chrXIII 239731 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-2.081;QD=24.12;ReadPosRankSum=2.388;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3859,388,0 chrXIII 239887 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=173;Dels=0.00;FS=2.976;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.672;QD=24.31;ReadPosRankSum=2.421;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,168:173:99:4206,445,0 chrXIII 240460 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.83;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,102,0 chrXIII 240594 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.876;QD=25.95;ReadPosRankSum=2.388;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3147,327,0 chrXIII 241279 . A T 5971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=248;Dels=0.00;FS=6.109;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.341;QD=24.08;ReadPosRankSum=2.321;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5971,601,0 chrXIII 241545 . G C 2226 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2259,246,0 chrXIII 241597 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.79;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2277,225,0 chrXIII 241669 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.24;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:72:736,72,0 chrXIII 242258 . T A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.14;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4441,436,0 chrXIII 242460 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3051,312,0 chrXIII 242493 . G A 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.072;QD=25.11;ReadPosRankSum=0.841;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2695,248,0 chrXIII 242853 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.50;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3252,325,0 chrXIII 242871 . A C 3495.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.84;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3495,355,0 chrXIII 242910 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.19;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4080,403,0 chrXIII 243056 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.55;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3266,319,0 chrXIII 243069 . A C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.277;QD=20.81;ReadPosRankSum=1.707;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2884,294,0 chrXIII 243207 . A C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6449;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.404;QD=24.48;ReadPosRankSum=1.712;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4186,419,0 chrXIII 243473 . A G 6506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=258;Dels=0.00;FS=3.904;HaplotypeScore=14.0618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.886;QD=25.22;ReadPosRankSum=1.719;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6506,664,0 chrXIII 243623 . G A 5754.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6779;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.02;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5754,580,0 chrXIII 243777 . G T 4868.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.22;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4868,487,0 chrXIII 244001 . G C 6156.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.6471;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.22;SB=-3.727e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6156,652,0 chrXIII 244359 . C T 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DP=262;Dels=0.00;FS=3.214;HaplotypeScore=12.6393;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.071;QD=23.61;ReadPosRankSum=1.719;SB=-3.349e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6186,611,0 chrXIII 244448 . G A 5364.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.46;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5364,562,0 chrXIII 244497 . C T 6164.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.91;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6164,601,0 chrXIII 244520 . G A 5784.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=10.7544;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.16;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5784,589,0 chrXIII 244883 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.42;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4862,490,0 chrXIII 245123 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.791;QD=22.39;ReadPosRankSum=1.612;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3919,406,0 chrXIII 245142 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.60;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4317,427,0 chrXIII 245312 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.27;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4068,421,0 chrXIII 245345 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.4169;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.59;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4478,445,0 chrXIII 245459 . G A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.4679;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.90;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4780,478,0 chrXIII 245572 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.2466;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.192;QD=22.58;ReadPosRankSum=0.494;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4697,490,0 chrXIII 245624 . C T 5476.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=24.45;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5476,550,0 chrXIII 245628 . A G 5249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.106;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.613;QD=22.72;ReadPosRankSum=1.717;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5249,553,0 chrXIII 245654 . C T 5795.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=23.18;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5795,586,0 chrXIII 245675 . T G 4840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=241;Dels=0.00;FS=5.717;HaplotypeScore=17.4797;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.329;QD=20.08;ReadPosRankSum=2.920;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:3,235:241:99:4840,525,0 chrXIII 246258 . C T 7274.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=13.3118;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.52;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:7274,733,0 chrXIII 247466 . G C 1827 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.36;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1860,189,0 chrXIII 247590 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=11.8874;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.51;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5199,505,0 chrXIII 247727 . A T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.33;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3943,429,0 chrXIII 247728 . T G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.087;QD=19.31;ReadPosRankSum=2.725;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4016,444,0 chrXIII 247856 . T A 8842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=342;Dels=0.00;FS=10.875;HaplotypeScore=23.8319;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.589;QD=25.85;ReadPosRankSum=2.909;SB=-4.252e+03 GT:AD:DP:GQ:PL 1/1:3,339:342:99:8842,881,0 chrXIII 247975 . A G 7228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=299;Dels=0.00;FS=6.733;HaplotypeScore=23.9274;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.103;QD=24.17;ReadPosRankSum=2.343;SB=-3.794e+03 GT:AD:DP:GQ:PL 1/1:2,297:299:99:7228,742,0 chrXIII 248110 . A T 8150.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=3.6527;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.35;SB=-4.183e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:8150,815,0 chrXIII 248123 . A C 7511.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=366;Dels=0.00;FS=7.786;HaplotypeScore=16.0274;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.772;QD=20.52;ReadPosRankSum=2.409;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:2,360:366:99:7511,793,0 chrXIII 248171 . C T 7340.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=24.2940;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.21;SB=-4.520e+03 GT:AD:DP:GQ:PL 1/1:0,344:346:99:7340,730,0 chrXIII 248618 . G C 1615 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.94;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1648,171,0 chrXIII 248627 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7739;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.34;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1368,135,0 chrXIII 248645 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.43;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1526,159,0 chrXIII 249155 . G A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4808,505,0 chrXIII 249389 . G T 6346.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.66;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6346,643,0 chrXIII 249476 . T C 6290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=254;Dels=0.00;FS=5.706;HaplotypeScore=18.2879;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.250;QD=24.76;ReadPosRankSum=2.949;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:6290,661,0 chrXIII 250931 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.87;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2371,255,0 chrXIII 251233 . T G 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=24.45;ReadPosRankSum=1.669;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4034,415,0 chrXIII 251274 . A C 4562.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.07;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4562,466,0 chrXIII 251543 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=2.872;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.632;QD=22.98;ReadPosRankSum=2.362;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3906,397,0 chrXIII 251607 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=8.893;HaplotypeScore=6.8972;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-0.166;QD=20.66;ReadPosRankSum=2.418;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3235,331,0 chrXIII 251609 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=6.8972;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.257;QD=19.69;ReadPosRankSum=1.710;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3105,327,0 chrXIII 251736 . T G 2680 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.30;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2713,285,0 chrXIII 251941 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3458,346,0 chrXIII 252178 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5089,514,0 chrXIII 252422 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=187;Dels=0.00;FS=9.759;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.125;QD=22.94;ReadPosRankSum=2.930;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4289,442,0 chrXIII 252727 . A T 5313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=6.084;HaplotypeScore=9.3728;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.278;QD=26.70;ReadPosRankSum=2.955;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:5313,529,0 chrXIII 252757 . T C 4821.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.47;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4821,508,0 chrXIII 252877 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2281,228,0 chrXIII 253031 . T A 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=53;Dels=0.00;FS=2.458;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.690;QD=19.81;ReadPosRankSum=3.283;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:4,49:53:99:1083,111,0 chrXIII 253274 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.75;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4257,439,0 chrXIII 253290 . G C 4510.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=24.92;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4510,460,0 chrXIII 253309 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.51;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4096,415,0 chrXIII 253431 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.33;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4059,409,0 chrXIII 253440 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.44;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3867,385,0 chrXIII 253470 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.81;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3832,394,0 chrXIII 253616 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2805;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.95;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4024,418,0 chrXIII 253856 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.51;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4731,484,0 chrXIII 253877 . G A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.62;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4841,499,0 chrXIII 254427 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=188;Dels=0.00;FS=9.751;HaplotypeScore=12.3960;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.866;QD=22.68;ReadPosRankSum=2.920;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4263,456,0 chrXIII 254807 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.60;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2723,279,0 chrXIII 254816 . G T 2663 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=23.16;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2696,270,0 chrXIII 255569 . A G 5172.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.25;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5172,538,0 chrXIII 256812 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.78;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3067,313,0 chrXIII 256814 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-1.039;QD=20.48;ReadPosRankSum=3.228;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:3003,318,0 chrXIII 257082 . A C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.874;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.675;QD=25.09;ReadPosRankSum=1.704;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3119,330,0 chrXIII 257100 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.280;QD=23.68;ReadPosRankSum=1.702;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2756,294,0 chrXIII 257604 . G A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.44;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4884,487,0 chrXIII 257710 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.67;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3947,391,0 chrXIII 257756 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.12;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3793,379,0 chrXIII 257811 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3330,345,0 chrXIII 259069 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.419;QD=26.40;ReadPosRankSum=1.709;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:4092,418,0 chrXIII 259215 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=21.26;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2393,237,0 chrXIII 259244 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=16.80;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1696,174,0 chrXIII 259259 . T G 1545 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=14.86;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1578,162,0 chrXIII 259265 . C T 1459 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=14.59;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1492,147,0 chrXIII 259267 . G A 1458 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.44;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1491,147,0 chrXIII 259663 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=187;Dels=0.00;FS=2.831;HaplotypeScore=15.3319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.567;QD=24.49;ReadPosRankSum=2.410;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4579,469,0 chrXIII 260376 . T G 3033 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.66;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3066,313,0 chrXIII 260397 . T G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.9481;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.342;QD=22.42;ReadPosRankSum=1.683;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3217,336,0 chrXIII 260437 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.59;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3150,324,0 chrXIII 260462 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.072;QD=23.87;ReadPosRankSum=1.705;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3041,315,0 chrXIII 260580 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=178;Dels=0.00;FS=5.837;HaplotypeScore=12.2510;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.903;QD=24.85;ReadPosRankSum=2.949;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4424,466,0 chrXIII 260820 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7794;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.22;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3911,388,0 chrXIII 260832 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=2.905;HaplotypeScore=4.8333;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.118;QD=20.61;ReadPosRankSum=2.395;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3689,379,0 chrXIII 261191 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4300;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.612;QD=24.01;ReadPosRankSum=1.691;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4010,415,0 chrXIII 261722 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2507,261,0 chrXIII 261864 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.0111;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.19;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3678,393,0 chrXIII 262071 . G T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.45;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4428,439,0 chrXIII 262219 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4174,412,0 chrXIII 262578 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=24.71;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3830,376,0 chrXIII 262580 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.598;QD=22.66;ReadPosRankSum=1.710;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3512,355,0 chrXIII 262749 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.16;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3889,400,0 chrXIII 262788 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=157;Dels=0.00;FS=3.020;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.087;QD=23.82;ReadPosRankSum=2.339;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3740,382,0 chrXIII 262820 . G C 3804.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.38;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3804,402,0 chrXIII 262904 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=24.79;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3744,370,0 chrXIII 262915 . T A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.83;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3336,343,0 chrXIII 262958 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.67;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3158,324,0 chrXIII 263216 . A G 2717 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7786;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.09;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2750,276,0 chrXIII 263244 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.30;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2464,243,0 chrXIII 263467 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.212;QD=26.33;ReadPosRankSum=1.661;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2613,267,0 chrXIII 264400 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3424,355,0 chrXIII 264463 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.083;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.433;QD=25.04;ReadPosRankSum=1.703;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3038,312,0 chrXIII 264816 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.371;HaplotypeScore=6.6024;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.303;QD=25.90;ReadPosRankSum=1.701;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2960,303,0 chrXIII 264995 . A C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=6.954;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=23.26;ReadPosRankSum=2.357;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3150,324,0 chrXIII 265689 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=161;Dels=0.00;FS=3.066;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.417;QD=24.26;ReadPosRankSum=1.688;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3906,400,0 chrXIII 266166 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1929,201,0 chrXIII 266327 . C A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.58;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3282,325,0 chrXIII 266878 . T A 579 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.55;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:612,63,0 chrXIII 267659 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.74;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2730,279,0 chrXIII 267926 . T A 275 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:308,30,0 chrXIII 267945 . T C 244 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:277,30,0 chrXIII 268003 . A G 111.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.742;QD=15.89;ReadPosRankSum=0.742;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:15:144,15,0 chrXIII 268043 . C T 123.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.61;SB=-6.376e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:156,15,0 chrXIII 268317 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.62;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1980,204,0 chrXIII 268353 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.49;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2378,243,0 chrXIII 268453 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.338;QD=22.63;ReadPosRankSum=1.690;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1889,195,0 chrXIII 268510 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.193;QD=26.09;ReadPosRankSum=1.694;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2381,246,0 chrXIII 268600 . C G 1890 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.62;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1923,195,0 chrXIII 268621 . T A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.038;QD=23.13;ReadPosRankSum=1.619;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2161,213,0 chrXIII 268655 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.42;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2096,207,0 chrXIII 268659 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.78;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2146,222,0 chrXIII 268760 . A C 2104 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.35;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2137,219,0 chrXIII 270321 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=194;Dels=0.00;FS=7.879;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.782;QD=23.60;ReadPosRankSum=2.398;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,189:194:99:4579,492,0 chrXIII 270930 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.701;QD=23.55;ReadPosRankSum=1.703;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2882,303,0 chrXIII 271064 . T C 2894 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2927,300,0 chrXIII 271498 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.50;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2654,273,0 chrXIII 271672 . A C 3120 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3153,333,0 chrXIII 271938 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=169;Dels=0.00;FS=12.174;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.946;QD=23.65;ReadPosRankSum=2.899;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3996,409,0 chrXIII 272743 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=79.4208;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=19.64;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2095,219,0 chrXIII 272746 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.600;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=81.4249;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-1.133;QD=19.77;ReadPosRankSum=1.666;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2089,216,0 chrXIII 272852 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2153;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.55;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1917,198,0 chrXIII 272987 . G T 1560 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=26.90;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1593,159,0 chrXIII 273113 . A C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.836;QD=22.05;ReadPosRankSum=1.672;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2613,273,0 chrXIII 273116 . A C 2656 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.30;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2689,270,0 chrXIII 273179 . A G 1318 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.26;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1351,138,0 chrXIII 273245 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.08;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2745,271,0 chrXIII 273267 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.77;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2766,291,0 chrXIII 273333 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.577;QD=23.02;ReadPosRankSum=1.691;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2013,210,0 chrXIII 273468 . C G 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.93;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,210,0 chrXIII 273484 . T C 2060 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.46;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2093,213,0 chrXIII 274088 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=18.6032;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.82;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4765,475,0 chrXIII 274105 . G A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.66;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4448,436,0 chrXIII 274143 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.060;QD=21.99;ReadPosRankSum=1.697;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:4376,463,0 chrXIII 274730 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.729;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.047;QD=24.51;ReadPosRankSum=1.713;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4412,471,0 chrXIII 274880 . T C 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=196;Dels=0.00;FS=6.088;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.554;QD=25.32;ReadPosRankSum=2.954;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4963,517,0 chrXIII 274946 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3601,378,0 chrXIII 275441 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.5259;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.81;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3548,375,0 chrXIII 275717 . T A 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=89;Dels=0.00;FS=5.590;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=1.875;QD=24.47;ReadPosRankSum=2.876;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:2211,219,0 chrXIII 275773 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=18.40;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1818,186,0 chrXIII 275774 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=1.449;QD=17.89;ReadPosRankSum=1.697;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1786,183,0 chrXIII 275790 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=17.37;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2030,210,0 chrXIII 275822 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.61;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1521,153,0 chrXIII 275831 . A G 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.200;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.587;QD=10.03;ReadPosRankSum=1.703;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1247,129,0 chrXIII 275836 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=11.32;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1425,147,0 chrXIII 275847 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=5.540;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;MQRankSum=-2.750;QD=10.65;ReadPosRankSum=2.944;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:1364,141,0 chrXIII 275851 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;QD=10.47;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1373,141,0 chrXIII 275891 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=15.14;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2274,231,0 chrXIII 275910 . C G 2851 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.58;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:2884,306,0 chrXIII 275928 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=2.592;HaplotypeScore=8.0857;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.242;QD=19.80;ReadPosRankSum=2.422;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3525,367,0 chrXIII 276220 . T C 5234.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=4.0140;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.61;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5234,564,0 chrXIII 276222 . T C 5424.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.35;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5424,547,0 chrXIII 276641 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5792;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.78;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3965,406,0 chrXIII 276727 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7664;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=23.05;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3273,328,0 chrXIII 276740 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.620;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-1.541;QD=19.36;ReadPosRankSum=1.708;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2859,303,0 chrXIII 276755 . C A 3082 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.38;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3115,321,0 chrXIII 276983 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8246;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.61;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4610,495,0 chrXIII 277019 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0121;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=25.28;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4095,424,0 chrXIII 277070 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=5.379;HaplotypeScore=11.9146;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.138;QD=22.98;ReadPosRankSum=1.712;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4067,424,0 chrXIII 277164 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=157;Dels=0.00;FS=2.579;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.442;QD=22.83;ReadPosRankSum=2.904;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3585,372,0 chrXIII 277293 . T G 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8738;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.93;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,207,0 chrXIII 277367 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.95;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2550,253,0 chrXIII 277529 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=26.12;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2906,289,0 chrXIII 277591 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.16;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3027,324,0 chrXIII 277897 . T A 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=238;Dels=0.00;FS=2.907;HaplotypeScore=18.9005;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.160;QD=24.70;ReadPosRankSum=2.326;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5878,586,0 chrXIII 278376 . T C 6403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=268;Dels=0.00;FS=2.943;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.529;QD=23.89;ReadPosRankSum=2.413;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:2,265:268:99:6403,667,0 chrXIII 278550 . C G 5402.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.28;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5402,553,0 chrXIII 279103 . A G 6029.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.71;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:6029,619,0 chrXIII 279388 . T C 8044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=343;Dels=0.00;FS=4.337;HaplotypeScore=16.6974;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.587;QD=23.45;ReadPosRankSum=1.661;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:1,341:343:99:8044,841,0 chrXIII 279616 . C T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.39;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:5172,514,0 chrXIII 279667 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.12;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4521,460,0 chrXIII 279942 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=23.22;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3599,393,0 chrXIII 280278 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4179,427,0 chrXIII 280719 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=215.1757;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=10.58;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:2552,282,0 chrXIII 281241 . A G 5468.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5468,553,0 chrXIII 281820 . T C 5770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=3.439;HaplotypeScore=14.0486;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.184;QD=24.35;ReadPosRankSum=1.702;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5770,583,0 chrXIII 281850 . A G 6013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.059;QD=24.15;ReadPosRankSum=1.690;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:6013,601,0 chrXIII 281871 . A C 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=238;Dels=0.00;FS=2.723;HaplotypeScore=6.7215;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.624;QD=23.68;ReadPosRankSum=2.398;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5635,565,0 chrXIII 282019 . C A 5767.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.73;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5767,574,0 chrXIII 282022 . T C 5610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=257;Dels=0.00;FS=7.957;HaplotypeScore=9.6417;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.787;QD=21.83;ReadPosRankSum=3.745;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:5,251:257:99:5610,577,0 chrXIII 282531 . C T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.90;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4582,457,0 chrXIII 282723 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=138;Dels=0.00;FS=6.647;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.637;QD=24.60;ReadPosRankSum=2.414;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3395,346,0 chrXIII 282738 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.98;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3647,370,0 chrXIII 283144 . A G 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.534;HaplotypeScore=12.9927;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.122;QD=25.60;ReadPosRankSum=1.638;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4762,508,0 chrXIII 283179 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.31;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4763,478,0 chrXIII 283596 . C G 2038 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.40;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2071,216,0 chrXIII 283603 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=24.50;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2238,216,0 chrXIII 283621 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.24;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2218,219,0 chrXIII 283819 . G T 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.540;QD=28.51;ReadPosRankSum=-0.642;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4619,435,0 chrXIII 283900 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.55;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3682,384,0 chrXIII 284421 . C A 6240.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.3874;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=26.55;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6240,622,0 chrXIII 284443 . T C 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=220;Dels=0.00;FS=2.568;HaplotypeScore=12.5054;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.032;QD=23.20;ReadPosRankSum=1.702;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:5105,519,0 chrXIII 284491 . C T 4467.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5277;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.27;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4467,442,0 chrXIII 285831 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.78;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1864,192,0 chrXIII 285841 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.73;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2259,219,0 chrXIII 286123 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.9047;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.89;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4680,487,0 chrXIII 286312 . C G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.4343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:3548,364,0 chrXIII 286577 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2941,297,0 chrXIII 287411 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.74;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3070,304,0 chrXIII 287490 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.1951;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.07;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2103,228,0 chrXIII 288433 . T A 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.852;QD=25.10;ReadPosRankSum=1.695;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4668,469,0 chrXIII 290197 . A C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=4.023;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.523;QD=24.17;ReadPosRankSum=1.616;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3650,370,0 chrXIII 290445 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3705,385,0 chrXIII 290709 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=24.84;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2219,219,0 chrXIII 290717 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.40;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1706,174,0 chrXIII 290765 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.97;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1802,180,0 chrXIII 290769 . T C 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.268;QD=21.63;ReadPosRankSum=1.683;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1569,162,0 chrXIII 290779 . A G 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=7.618;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.662;QD=21.64;ReadPosRankSum=2.379;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1526,156,0 chrXIII 290867 . G T 1828 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.57;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1861,183,0 chrXIII 290874 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.78;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1799,192,0 chrXIII 291003 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=102;Dels=0.00;FS=16.055;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.653;QD=24.75;ReadPosRankSum=3.369;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:4,97:102:99:2558,264,0 chrXIII 291037 . T C 2834 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.25;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2867,294,0 chrXIII 291392 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.695;QD=25.94;ReadPosRankSum=1.685;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3839,397,0 chrXIII 291580 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3874,385,0 chrXIII 291815 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3837,400,0 chrXIII 291877 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.911;HaplotypeScore=9.0749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.731;QD=26.20;ReadPosRankSum=2.392;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4481,483,0 chrXIII 292060 . C T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4448,442,0 chrXIII 292852 . A T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3913,397,0 chrXIII 292953 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2860;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.97;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4675,469,0 chrXIII 293346 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.791;QD=24.39;ReadPosRankSum=1.709;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3731,382,0 chrXIII 293938 . A T 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=8.837;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.008;QD=27.26;ReadPosRankSum=2.402;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4198,415,0 chrXIII 294133 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=185;Dels=0.00;FS=6.073;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.299;QD=24.66;ReadPosRankSum=2.930;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4562,478,0 chrXIII 294166 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4112,444,0 chrXIII 295343 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.02;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2817,280,0 chrXIII 295950 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.03;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3388,340,0 chrXIII 296288 . A C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.237;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.107;QD=26.53;ReadPosRankSum=1.572;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3449,357,0 chrXIII 296799 . A C 3069 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=23.25;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3102,327,0 chrXIII 296809 . A C 3099 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=23.48;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3132,327,0 chrXIII 296838 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=7.463;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.148;QD=21.73;ReadPosRankSum=2.380;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3097,318,0 chrXIII 296848 . C G 2853 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.67;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2886,300,0 chrXIII 297132 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=27.0198;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=24.44;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2135,219,0 chrXIII 297405 . A G 2138 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2171,222,0 chrXIII 297626 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=4.260;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.029;QD=26.17;ReadPosRankSum=1.646;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3200,328,0 chrXIII 297840 . T A 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.586;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.180;QD=24.83;ReadPosRankSum=1.682;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3427,351,0 chrXIII 298131 . T A 2340 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=11.4444;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.08;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2373,237,0 chrXIII 298188 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=6.2525;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.30;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2716,279,0 chrXIII 298344 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=25.32;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2692,268,0 chrXIII 298460 . G C 2023 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2056,207,0 chrXIII 298658 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=4.698;HaplotypeScore=12.0833;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.294;QD=23.92;ReadPosRankSum=1.644;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2904,297,0 chrXIII 298799 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=165;Dels=0.00;FS=6.156;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.737;QD=24.45;ReadPosRankSum=2.389;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:4035,415,0 chrXIII 299038 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.06;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1758,180,0 chrXIII 299044 . G T 2053 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.56;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2086,204,0 chrXIII 299124 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.81;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2356,246,0 chrXIII 299304 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.82;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3131,327,0 chrXIII 299524 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.4936;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.57;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3983,415,0 chrXIII 299843 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.0687;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.23;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4182,421,0 chrXIII 300324 . G C 4053.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.2313;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.39;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4053,421,0 chrXIII 300558 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.20;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3046,309,0 chrXIII 301985 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.95;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3971,397,0 chrXIII 302512 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5512;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.10;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2574,282,0 chrXIII 302918 . A T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=15.1177;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.80;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3328,325,0 chrXIII 303266 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=10.199;HaplotypeScore=12.5145;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.426;QD=23.33;ReadPosRankSum=2.386;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4526,486,0 chrXIII 304595 . T C 6704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=272;Dels=0.00;FS=3.018;HaplotypeScore=16.5398;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.853;QD=24.65;ReadPosRankSum=2.431;SB=-3.674e+03 GT:AD:DP:GQ:PL 1/1:2,270:272:99:6704,688,0 chrXIII 307008 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.34;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3895,403,0 chrXIII 307069 . T G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=159;Dels=0.00;FS=5.757;HaplotypeScore=14.0458;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.032;QD=24.55;ReadPosRankSum=2.943;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3904,409,0 chrXIII 307219 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4455;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.59;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4180,412,0 chrXIII 307416 . T C 2419 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7186;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=23.49;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2452,246,0 chrXIII 307426 . A G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.00;FS=2.892;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.576;QD=21.22;ReadPosRankSum=2.343;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1985,210,0 chrXIII 307438 . T A 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.114;DP=88;Dels=0.00;FS=3.051;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.126;QD=19.89;ReadPosRankSum=2.394;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1783,183,0 chrXIII 307541 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.054;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.673;QD=25.65;ReadPosRankSum=1.703;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3034,312,0 chrXIII 307593 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.77;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3401,346,0 chrXIII 307796 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.16;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4397,436,0 chrXIII 308296 . T A 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.508;HaplotypeScore=9.4013;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.982;QD=26.50;ReadPosRankSum=1.688;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4160,418,0 chrXIII 308551 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.35;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3433,360,0 chrXIII 309981 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.76;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2076,213,0 chrXIII 310001 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.26;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2150,222,0 chrXIII 310028 . T A 2396 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.60;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2429,240,0 chrXIII 310152 . T A 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=82;Dels=0.05;FS=3.375;HaplotypeScore=45.1649;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=2.149;QD=12.99;ReadPosRankSum=2.166;SB=-6.722e+02 GT:AD:DP:GQ:PL 1/1:8,70:78:89:1098,89,0 chrXIII 310534 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3839,394,0 chrXIII 310687 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.81;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3405,354,0 chrXIII 310813 . C T 5288.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2329;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.31;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5288,535,0 chrXIII 311023 . A T 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.718;QD=23.33;ReadPosRankSum=2.390;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3872,388,0 chrXIII 311235 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.73;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2813,282,0 chrXIII 313064 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3404,337,0 chrXIII 314771 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4470,457,0 chrXIII 314816 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3914,382,0 chrXIII 315372 . T A 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.268;QD=27.37;ReadPosRankSum=1.708;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3887,385,0 chrXIII 317105 . A T 3084 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3117,324,0 chrXIII 319136 . A C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.359;QD=23.14;ReadPosRankSum=1.705;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3088,333,0 chrXIII 321660 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.09;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3040,298,0 chrXIII 325905 . T A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3678,361,0 chrXIII 327769 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3280,325,0 chrXIII 328866 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2789,297,0 chrXIII 329249 . T C 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=12.4419;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.700;QD=20.94;ReadPosRankSum=0.642;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2294,240,0 chrXIII 329923 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3975,394,0 chrXIII 331334 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.60;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3963,406,0 chrXIII 331755 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.5809;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.28;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2361,243,0 chrXIII 333449 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.09;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3989,415,0 chrXIII 334583 . G A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4411,454,0 chrXIII 334830 . T G 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=196;Dels=0.00;FS=5.921;HaplotypeScore=12.2920;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.155;QD=25.29;ReadPosRankSum=2.466;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4956,517,0 chrXIII 335404 . T A 5108.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.80;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5108,508,0 chrXIII 336381 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4012,421,0 chrXIII 338431 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=6.545;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.377;QD=22.84;ReadPosRankSum=2.387;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4523,489,0 chrXIII 339643 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.4888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4273,421,0 chrXIII 341020 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9901;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.309;QD=26.53;ReadPosRankSum=1.097;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3502,352,0 chrXIII 341722 . T C 2354 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.08;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2387,252,0 chrXIII 343663 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=165;Dels=0.00;FS=4.592;HaplotypeScore=12.7118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.837;QD=23.84;ReadPosRankSum=2.937;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:4,160:165:99:3934,392,0 chrXIII 345749 . G T 3099 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3132,310,0 chrXIII 346162 . C T 5035.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.56;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5035,496,0 chrXIII 349796 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2926,306,0 chrXIII 350323 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4729,493,0 chrXIII 350920 . T A 1318 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.61;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1351,135,0 chrXIII 352789 . A G 5989.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.6872;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5989,646,0 chrXIII 353259 . G A 6167.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.27;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6167,616,0 chrXIII 355100 . C T 1218 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1251,126,0 chrXIII 355589 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2512;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.666;QD=23.99;ReadPosRankSum=1.600;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3767,388,0 chrXIII 356409 . G C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3601,384,0 chrXIII 362883 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.51;MQ0=11;QD=1.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,3:13:6:57,6,0 chrXIII 362992 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=23.77;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4825,475,0 chrXIII 363033 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=25.17;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4631,463,0 chrXIII 363595 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=7.699;HaplotypeScore=11.3212;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.055;QD=23.85;ReadPosRankSum=1.589;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3744,399,0 chrXIII 363801 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=144;Dels=0.00;FS=6.113;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.281;QD=23.69;ReadPosRankSum=2.295;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3412,349,0 chrXIII 363840 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.68;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3163,330,0 chrXIII 363895 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=2.979;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.249;QD=22.67;ReadPosRankSum=2.364;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3287,351,0 chrXIII 364102 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.43;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3815,385,0 chrXIII 364252 . G T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.69;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3982,400,0 chrXIII 364264 . C A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=26.18;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4111,403,0 chrXIII 364294 . C G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.75;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3719,399,0 chrXIII 364324 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=2.855;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.933;QD=22.03;ReadPosRankSum=2.380;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3877,408,0 chrXIII 364548 . A G 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=238;Dels=0.00;FS=5.953;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.623;QD=24.70;ReadPosRankSum=2.970;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:5878,601,0 chrXIII 364627 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=181;Dels=0.00;FS=10.830;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-2.013;QD=19.64;ReadPosRankSum=3.726;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:5,176:181:99:3554,370,0 chrXIII 364636 . G T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.67;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3324,334,0 chrXIII 364639 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=19.23;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3263,328,0 chrXIII 365286 . T G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.455;QD=22.11;ReadPosRankSum=1.689;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3559,384,0 chrXIII 365359 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.4761;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.92;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3873,394,0 chrXIII 365365 . T A 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.027;QD=22.68;ReadPosRankSum=1.711;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3811,391,0 chrXIII 365505 . G C 5057.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.67;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5057,520,0 chrXIII 365551 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.63;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5766,580,0 chrXIII 365580 . G A 5577.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.6331;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=26.06;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5577,562,0 chrXIII 365788 . T A 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=19.6505;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.126;QD=21.15;ReadPosRankSum=1.622;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:3,212:218:99:4610,484,0 chrXIII 365953 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.096;DP=142;Dels=0.00;FS=13.549;HaplotypeScore=18.1068;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.644;QD=17.71;ReadPosRankSum=-0.106;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:5,137:142:99:2548,288,0 chrXIII 366043 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0493;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.19;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4088,418,0 chrXIII 366559 . T C 6426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=260;Dels=0.00;FS=6.068;HaplotypeScore=17.7465;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.615;QD=24.72;ReadPosRankSum=2.973;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:6426,676,0 chrXIII 366629 . C G 6450.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.7278;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.00;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6450,661,0 chrXIII 366707 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.7613;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.228;QD=23.68;ReadPosRankSum=1.712;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4168,424,0 chrXIII 366806 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=4.387;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.591;QD=23.89;ReadPosRankSum=1.712;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4133,418,0 chrXIII 366938 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.634;QD=25.84;ReadPosRankSum=1.690;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4264,436,0 chrXIII 367008 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3870,379,0 chrXIII 367606 . T A 7937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=18.3080;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.633;QD=24.80;ReadPosRankSum=0.326;SB=-4.072e+03 GT:AD:DP:GQ:PL 1/1:2,318:320:99:7937,826,0 chrXIII 367636 . T C 7544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=310;Dels=0.00;FS=4.036;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.398;QD=24.34;ReadPosRankSum=1.665;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:7544,766,0 chrXIII 367845 . C A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3865,385,0 chrXIII 367942 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.375;QD=26.06;ReadPosRankSum=1.705;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3283,325,0 chrXIII 368619 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3439,346,0 chrXIII 369062 . A C 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=185;Dels=0.00;FS=9.321;HaplotypeScore=13.2758;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.170;QD=23.67;ReadPosRankSum=2.896;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4379,463,0 chrXIII 369419 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3600,381,0 chrXIII 369465 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.48;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3109,307,0 chrXIII 369610 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.383;QD=24.79;ReadPosRankSum=2.378;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3471,358,0 chrXIII 371117 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.42;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3356,348,0 chrXIII 371525 . G A 3167 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.63;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3200,325,0 chrXIII 371527 . A G 3031 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=137;Dels=0.00;FS=3.023;HaplotypeScore=3.6609;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.045;QD=22.12;ReadPosRankSum=2.198;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3064,318,0 chrXIII 371533 . G A 3104 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.16;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3137,324,0 chrXIII 371651 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DP=122;Dels=0.00;FS=2.586;HaplotypeScore=7.0455;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.281;QD=21.47;ReadPosRankSum=2.893;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2652,273,0 chrXIII 371667 . C A 2760 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=24.64;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2793,274,0 chrXIII 371689 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=20.66;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2326,246,0 chrXIII 371755 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=80;Dels=0.00;FS=3.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;MQRankSum=-0.077;QD=22.92;ReadPosRankSum=2.388;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1867,195,0 chrXIII 371760 . A T 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;MQRankSum=-1.039;QD=26.13;ReadPosRankSum=1.686;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1993,195,0 chrXIII 371821 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=21.49;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1924,204,0 chrXIII 371851 . A T 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;MQRankSum=-0.958;QD=22.26;ReadPosRankSum=1.695;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2125,213,0 chrXIII 371856 . A C 1974 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=21.00;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2007,216,0 chrXIII 371874 . A T 1702 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=21.82;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1735,180,0 chrXIII 371909 . C G 804 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;QD=17.48;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:93:837,93,0 chrXIII 371910 . T C 810 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=18.84;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:843,90,0 chrXIII 371920 . A G 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=1.578;QD=18.27;ReadPosRankSum=1.655;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:1,44:45:90:855,90,0 chrXIII 371940 . C T 653 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=18.14;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:686,78,0 chrXIII 371941 . T A 664 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=18.44;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:697,78,0 chrXIII 371956 . G A 607 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=15.97;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:69:640,69,0 chrXIII 371963 . G T 679 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=15.79;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:75:712,75,0 chrXIII 371979 . T C 780 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=16.96;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:813,90,0 chrXIII 371989 . C G 736 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=14.72;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:84:769,84,0 chrXIII 371993 . C T 946 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=17.85;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:979,111,0 chrXIII 371997 . A G 1113 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=19.53;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1146,123,0 chrXIII 372077 . T C 513 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=16.55;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:546,60,0 chrXIII 372089 . C T 147.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=10.50;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,11:14:21:180,21,0 chrXIII 372090 . T G 120.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=-0.158;QD=10.92;ReadPosRankSum=1.423;SB=-2.912e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:18:153,18,0 chrXIII 372103 . G A 132.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=12.01;SB=-8.263e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:165,18,0 chrXIII 372225 . T G 1811 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.091;QD=26.63;ReadPosRankSum=2.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1844,189,0 chrXIII 372297 . A G 2132 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.51;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2165,228,0 chrXIII 372301 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.09;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2341,231,0 chrXIII 372322 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.74;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2431,240,0 chrXIII 372428 . C A 2900 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=25.22;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2933,289,0 chrXIII 372531 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;MQRankSum=-0.736;QD=22.16;ReadPosRankSum=1.689;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1806,183,0 chrXIII 378680 . T A 780 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=14.44;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:813,81,0 chrXIII 378772 . C G 1509 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=26.95;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1542,159,0 chrXIII 378811 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=23.43;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1767,189,0 chrXIII 378833 . C G 2099 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.42;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2132,231,0 chrXIII 378917 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.75;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:3176,333,0 chrXIII 378957 . C G 3916.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3916,400,0 chrXIII 379425 . A C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=24.16;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3600,373,0 chrXIII 379439 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=156;Dels=0.00;FS=3.003;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.433;QD=21.65;ReadPosRankSum=2.402;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3378,349,0 chrXIII 379450 . C G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.20;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3286,351,0 chrXIII 379507 . T A 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.549;QD=20.48;ReadPosRankSum=1.686;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3125,330,0 chrXIII 379602 . G C 3603.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.51;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,141:147:99:3603,367,0 chrXIII 379628 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7495;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.063;QD=24.93;ReadPosRankSum=1.690;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4088,418,0 chrXIII 379777 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=140;Dels=0.00;FS=2.879;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.646;QD=24.11;ReadPosRankSum=2.344;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3376,354,0 chrXIII 379795 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.35;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3185,324,0 chrXIII 379813 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.91;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3057,307,0 chrXIII 379976 . T A 2250 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.84;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2283,240,0 chrXIII 379984 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.85;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2240,219,0 chrXIII 380241 . A C 968 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.04;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1001,111,0 chrXIII 380333 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.13;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1487,159,0 chrXIII 381204 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=6.217;HaplotypeScore=11.0677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.651;QD=23.48;ReadPosRankSum=2.403;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3734,399,0 chrXIII 381248 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4219,445,0 chrXIII 381609 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.2216;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.160;QD=21.19;ReadPosRankSum=1.698;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2258,231,0 chrXIII 381619 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.98;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2278,228,0 chrXIII 381711 . A G 3095 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9709;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3128,327,0 chrXIII 382194 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.52;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4270,424,0 chrXIII 382384 . A T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.43;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4044,400,0 chrXIII 384682 . C G 5411.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.9318;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.73;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5411,577,0 chrXIII 385805 . T A 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.551;QD=24.64;ReadPosRankSum=1.652;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3212,330,0 chrXIII 387028 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2410,234,0 chrXIII 387084 . C G 697 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=17.87;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:75:730,75,0 chrXIII 387174 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1143,123,0 chrXIII 387573 . T C 6595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=279;Dels=0.00;FS=10.577;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.152;QD=23.64;ReadPosRankSum=2.953;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:3,276:279:99:6595,685,0 chrXIII 387621 . C T 5076.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.1278;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.56;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5076,535,0 chrXIII 387876 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=14.27;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:2759,285,0 chrXIII 387879 . A C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.8032;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.672;QD=13.82;ReadPosRankSum=1.714;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2755,291,0 chrXIII 388149 . A C 5526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.666;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.651;QD=25.82;ReadPosRankSum=1.716;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5526,583,0 chrXIII 388416 . T C 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=223;Dels=0.00;FS=5.214;HaplotypeScore=19.1484;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.131;QD=24.05;ReadPosRankSum=3.397;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:4,217:223:99:5364,547,0 chrXIII 388450 . A G 5355.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.38;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5355,553,0 chrXIII 388831 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3926;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=26.78;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4473,454,0 chrXIII 389020 . A G 7480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=320;Dels=0.00;FS=8.388;HaplotypeScore=11.3696;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.244;QD=23.38;ReadPosRankSum=2.411;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:2,316:320:99:7480,760,0 chrXIII 389031 . C T 7587.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=8.2725;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.18;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:0,341:342:99:7587,775,0 chrXIII 389517 . C T 7141.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=20.4672;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.21;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:7141,715,0 chrXIII 389982 . T C 7923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=304;Dels=0.00;FS=2.924;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.134;QD=26.06;ReadPosRankSum=2.393;SB=-3.637e+03 GT:AD:DP:GQ:PL 1/1:2,300:304:99:7923,814,0 chrXIII 390009 . G A 7851.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=9.9325;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.91;SB=-3.999e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:7851,770,0 chrXIII 390237 . T C 6027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=258;Dels=0.00;FS=9.764;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.348;QD=23.36;ReadPosRankSum=2.973;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:3,254:258:99:6027,628,0 chrXIII 390351 . T C 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.381;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.866;QD=22.71;ReadPosRankSum=1.716;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:5087,511,0 chrXIII 390358 . C A 5216.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.82;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5216,517,0 chrXIII 390486 . T G 5486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.885;DP=234;Dels=0.00;FS=8.705;HaplotypeScore=20.1659;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.350;QD=23.44;ReadPosRankSum=2.994;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:4,225:234:99:5486,528,0 chrXIII 390664 . C G 4151.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4151,436,0 chrXIII 391021 . A T 2588 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2948;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.65;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2621,267,0 chrXIII 391381 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.21;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3442,366,0 chrXIII 391443 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.08;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3647,376,0 chrXIII 391504 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.97;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2670,262,0 chrXIII 391574 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.64;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3007,301,0 chrXIII 391763 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2287;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.27;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3967,400,0 chrXIII 391847 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.252;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.726;QD=25.26;ReadPosRankSum=1.709;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3764,388,0 chrXIII 392147 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.94;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3580,367,0 chrXIII 392206 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=6.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.454;QD=20.05;ReadPosRankSum=2.398;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1958,201,0 chrXIII 392217 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=98;Dels=0.00;FS=3.102;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.335;QD=18.90;ReadPosRankSum=1.660;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1885,198,0 chrXIII 392476 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.19;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4685,501,0 chrXIII 393315 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.8269;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.663;QD=23.62;ReadPosRankSum=1.709;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3566,358,0 chrXIII 393588 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.9680;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.18;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4135,415,0 chrXIII 394309 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.75;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1578,156,0 chrXIII 394731 . G C 2043 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.22;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2076,216,0 chrXIII 394755 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.37;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2113,210,0 chrXIII 394852 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.36;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2089,207,0 chrXIII 394901 . G C 2016 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.00;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2049,219,0 chrXIII 395396 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.4725;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.07;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4693,504,0 chrXIII 395990 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=108;Dels=0.00;FS=2.053;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.895;QD=20.10;ReadPosRankSum=2.899;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:4,103:108:99:2204,240,0 chrXIII 396068 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=27.68;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2884,289,0 chrXIII 396104 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.46;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2386,249,0 chrXIII 396107 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.68;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2308,234,0 chrXIII 396173 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.52;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2376,246,0 chrXIII 396176 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.63;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2447,246,0 chrXIII 396424 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=165;Dels=0.00;FS=8.582;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.485;QD=25.04;ReadPosRankSum=2.404;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:4131,444,0 chrXIII 396464 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.142;QD=24.36;ReadPosRankSum=-1.278;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4482,445,0 chrXIII 396483 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=209;Dels=0.00;FS=2.987;HaplotypeScore=7.1508;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.172;QD=21.39;ReadPosRankSum=2.402;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4470,472,0 chrXIII 396594 . C A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=24.6498;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.07;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4839,472,0 chrXIII 396680 . C G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.17;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3847,397,0 chrXIII 396704 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.84;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3651,364,0 chrXIII 396921 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=139;Dels=0.00;FS=8.199;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.042;QD=24.60;ReadPosRankSum=2.414;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3420,355,0 chrXIII 397127 . G C 5135.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6011;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.05;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5135,529,0 chrXIII 397176 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.9999;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.72;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5116,529,0 chrXIII 397732 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.37;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4921,531,0 chrXIII 397824 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.453;QD=23.93;ReadPosRankSum=1.712;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4260,448,0 chrXIII 398046 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4555;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.114;QD=22.93;ReadPosRankSum=1.687;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3486,346,0 chrXIII 398054 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=156;Dels=0.00;FS=7.266;HaplotypeScore=9.7807;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.343;QD=19.74;ReadPosRankSum=2.370;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3113,316,0 chrXIII 398240 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.145;QD=25.66;ReadPosRankSum=1.692;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4388,454,0 chrXIII 398256 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=25.88;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4580,457,0 chrXIII 398295 . A G 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=2.637;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.160;QD=21.87;ReadPosRankSum=2.404;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3565,372,0 chrXIII 398377 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.00;ReadPosRankSum=1.707;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3336,343,0 chrXIII 398430 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.29;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3303,348,0 chrXIII 398491 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.21;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2733,279,0 chrXIII 398538 . A C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=116;Dels=0.00;FS=6.072;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.609;QD=23.62;ReadPosRankSum=2.835;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2773,285,0 chrXIII 398576 . A T 2904 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.70;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2937,295,0 chrXIII 398620 . A C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.732;QD=24.02;ReadPosRankSum=1.696;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2339,243,0 chrXIII 398658 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.67;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2087,207,0 chrXIII 398786 . A T 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=84;Dels=0.00;FS=2.836;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.965;QD=24.95;ReadPosRankSum=2.331;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:2129,219,0 chrXIII 398818 . T C 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.442;QD=22.24;ReadPosRankSum=1.437;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2124,216,0 chrXIII 398820 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.14;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2203,225,0 chrXIII 398916 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.917;QD=25.81;ReadPosRankSum=1.651;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2227,234,0 chrXIII 398994 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.01;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1989,204,0 chrXIII 399077 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.04;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2976,298,0 chrXIII 400173 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.76;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2955,295,0 chrXIII 400769 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.35;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3473,346,0 chrXIII 400907 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2845,294,0 chrXIII 401274 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=26.60;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3591,361,0 chrXIII 401296 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=6.755;HaplotypeScore=8.7528;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.825;QD=23.93;ReadPosRankSum=2.412;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3144,324,0 chrXIII 401346 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=27.40;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3590,355,0 chrXIII 401410 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3377,343,0 chrXIII 401494 . T G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.14;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4209,442,0 chrXIII 401933 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9650;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.45;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3349,346,0 chrXIII 401988 . T G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=110;Dels=0.00;FS=2.617;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.998;QD=24.61;ReadPosRankSum=2.405;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2740,291,0 chrXIII 402251 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.86;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2700,270,0 chrXIII 402254 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.31;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2590,255,0 chrXIII 402422 . T C 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.643;QD=23.84;ReadPosRankSum=1.703;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2846,297,0 chrXIII 402534 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=23.28;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2803,277,0 chrXIII 402537 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.428;QD=21.96;ReadPosRankSum=1.702;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2537,264,0 chrXIII 402574 . A T 2647 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.24;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2680,267,0 chrXIII 403091 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.00;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2195,228,0 chrXIII 403250 . A G 1543 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0110;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.43;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1576,165,0 chrXIII 403256 . A G 1247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.312;QD=20.44;ReadPosRankSum=1.619;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1280,132,0 chrXIII 403258 . A G 1336 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.55;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1369,138,0 chrXIII 403773 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.63;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2483,243,0 chrXIII 404476 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3524,355,0 chrXIII 405245 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.21;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2575,267,0 chrXIII 405299 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.32;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2768,274,0 chrXIII 406240 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.80;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2176,222,0 chrXIII 406315 . G T 2491 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.28;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2524,252,0 chrXIII 406355 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.022;QD=24.25;ReadPosRankSum=2.918;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,132:136:99:3298,348,0 chrXIII 406715 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5497,562,0 chrXIII 407934 . A G 6851.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-3.673e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6851,733,0 chrXIII 409456 . C A 3094 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=23.44;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3127,313,0 chrXIII 409643 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.732;QD=25.06;ReadPosRankSum=1.624;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1637,168,0 chrXIII 410660 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.87;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3255,351,0 chrXIII 411358 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.51;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2881,294,0 chrXIII 411619 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.05;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4734,475,0 chrXIII 412177 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.93;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2042,207,0 chrXIII 412249 . T A 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.758;QD=25.65;ReadPosRankSum=1.696;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2495,258,0 chrXIII 412378 . T A 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=2.778;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.196;QD=25.81;ReadPosRankSum=2.404;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2795,274,0 chrXIII 412745 . C T 4965.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.20;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4965,490,0 chrXIII 412783 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.2766;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.41;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4047,427,0 chrXIII 412789 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.71;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:3765,402,0 chrXIII 412878 . C G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.45;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3454,352,0 chrXIII 412883 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.11;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3220,325,0 chrXIII 413447 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.62;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4086,403,0 chrXIII 414299 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7571;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.21;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3970,397,0 chrXIII 414344 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2979,295,0 chrXIII 414447 . C T 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.629;QD=24.99;ReadPosRankSum=1.698;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2557,258,0 chrXIII 414548 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2594,261,0 chrXIII 415535 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.98;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2406,240,0 chrXIII 415566 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.167;QD=23.32;ReadPosRankSum=1.697;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2318,243,0 chrXIII 415772 . T G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.540;QD=26.28;ReadPosRankSum=0.314;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2608,273,0 chrXIII 415927 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2810;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.25;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3215,319,0 chrXIII 416114 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.308;QD=22.43;ReadPosRankSum=2.418;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3476,363,0 chrXIII 416124 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.22;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3333,334,0 chrXIII 416274 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.64;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4393,457,0 chrXIII 416283 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.91;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4169,418,0 chrXIII 416348 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.98;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3853,382,0 chrXIII 416746 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.62;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3175,327,0 chrXIII 416781 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.66;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2933,289,0 chrXIII 416929 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.05;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3136,313,0 chrXIII 416970 . A C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.340;QD=23.23;ReadPosRankSum=1.670;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2635,279,0 chrXIII 417054 . C A 3002 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.27;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3035,307,0 chrXIII 417062 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.54;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3022,306,0 chrXIII 417126 . A C 2638 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0810;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.14;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2671,273,0 chrXIII 417249 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.20;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2121,219,0 chrXIII 417498 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.53;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2466,246,0 chrXIII 417504 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.45;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2180,231,0 chrXIII 417524 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=22.15;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2359,234,0 chrXIII 418089 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.295;QD=25.57;ReadPosRankSum=1.658;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2462,252,0 chrXIII 418191 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.365;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.102;QD=22.76;ReadPosRankSum=1.698;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2377,249,0 chrXIII 418206 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.32;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2295,240,0 chrXIII 418776 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.18;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3377,346,0 chrXIII 418871 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2957,295,0 chrXIII 418982 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2273,234,0 chrXIII 419424 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2815,282,0 chrXIII 419667 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3632,358,0 chrXIII 419718 . C A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3930,397,0 chrXIII 419976 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2780,277,0 chrXIII 420051 . G C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.64;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3548,364,0 chrXIII 420098 . A T 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.959;QD=24.75;ReadPosRankSum=1.675;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3028,295,0 chrXIII 420348 . A T 2430 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.59;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2463,255,0 chrXIII 420356 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=24.81;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2688,273,0 chrXIII 420528 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=26.59;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:3011,292,0 chrXIII 420568 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=4.4345;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.25;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2009,198,0 chrXIII 420683 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.96;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2764,271,0 chrXIII 420689 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.37;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2510,249,0 chrXIII 420702 . G C 2097 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.76;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2130,231,0 chrXIII 420786 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=126.1451;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=24.05;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1861,183,0 chrXIII 420832 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=22.84;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1769,174,0 chrXIII 420885 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=25.16;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1794,177,0 chrXIII 420892 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=25.00;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1758,177,0 chrXIII 420966 . T G 656 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=21.87;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:689,72,0 chrXIII 420982 . G A 74.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=33;Dels=0.00;FS=4.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=1.814;QD=2.24;ReadPosRankSum=3.685;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:22,11:33:99:104,0,417 chrXIII 421039 . G A 722 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=25.79;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:75:755,75,0 chrXIII 421102 . A T 475 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;MQRankSum=0.315;QD=21.59;ReadPosRankSum=1.576;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:51:508,51,0 chrXIII 422548 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.262;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.512;QD=24.44;ReadPosRankSum=1.708;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3520,367,0 chrXIII 422992 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.769;HaplotypeScore=12.5779;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.521;QD=23.76;ReadPosRankSum=1.706;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3169,327,0 chrXIII 423169 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=167;Dels=0.00;FS=9.438;HaplotypeScore=19.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.109;QD=24.20;ReadPosRankSum=2.390;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:4042,421,0 chrXIII 423369 . T G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=4.802;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.513;QD=22.17;ReadPosRankSum=1.683;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3226,339,0 chrXIII 423516 . G T 3201 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.92;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3234,325,0 chrXIII 423520 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.23;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3154,324,0 chrXIII 423541 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7642;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.77;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3125,324,0 chrXIII 423603 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.26;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3991,406,0 chrXIII 423901 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2873,294,0 chrXIII 424537 . A G 5126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=203;Dels=0.00;FS=9.161;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.262;QD=25.25;ReadPosRankSum=2.936;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:5126,529,0 chrXIII 424856 . A T 198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=143;Dels=0.03;FS=6.373;HaplotypeScore=99.3745;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.893;QD=1.38;ReadPosRankSum=2.414;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:27:231,27,0 chrXIII 424897 . T G 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.927;QD=16.26;ReadPosRankSum=1.692;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1431,153,0 chrXIII 425123 . A T 3131 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=25.66;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3164,319,0 chrXIII 425138 . A G 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.157;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.990;QD=23.93;ReadPosRankSum=1.701;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2713,276,0 chrXIII 425150 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.21;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2543,261,0 chrXIII 425898 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3516,361,0 chrXIII 426219 . T A 674 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=25.3833;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.28;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:707,75,0 chrXIII 426255 . A C 1015 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=18.12;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1048,111,0 chrXIII 431689 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.5539;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.83;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3863,391,0 chrXIII 432625 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=26.09;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3314,325,0 chrXIII 433082 . G A 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.051;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.0711;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.704;QD=21.32;ReadPosRankSum=1.619;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2677,265,0 chrXIII 433443 . C A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3396,337,0 chrXIII 436091 . C A 2964 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=26.95;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2997,298,0 chrXIII 436269 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.81;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2113,213,0 chrXIII 436342 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.39;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1746,195,0 chrXIII 436343 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.62;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1765,195,0 chrXIII 436396 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.27;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1391,138,0 chrXIII 436456 . G C 1448 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.94;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1481,156,0 chrXIII 436595 . A C 2084 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.38;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2117,219,0 chrXIII 436769 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.41;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3381,334,0 chrXIII 437012 . A G 5502.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5502,562,0 chrXIII 437167 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.00;FS=3.161;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.709;QD=23.86;ReadPosRankSum=1.685;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,146:151:99:3603,373,0 chrXIII 437323 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=170;Dels=0.01;FS=8.923;HaplotypeScore=16.6538;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-1.019;QD=24.95;ReadPosRankSum=3.304;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:4241,430,0 chrXIII 437477 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=19.52;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3156,319,0 chrXIII 437586 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.861;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.754;QD=22.20;ReadPosRankSum=1.668;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3619,384,0 chrXIII 437607 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=165;Dels=0.00;FS=7.631;HaplotypeScore=7.4998;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.490;QD=23.03;ReadPosRankSum=2.374;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3800,388,0 chrXIII 437854 . G T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=25.63;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3793,385,0 chrXIII 437922 . T C 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=195;Dels=0.00;FS=9.168;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.141;QD=21.52;ReadPosRankSum=2.964;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4197,447,0 chrXIII 437968 . A G 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=189;Dels=0.00;FS=6.327;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.072;QD=25.22;ReadPosRankSum=2.423;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4766,490,0 chrXIII 438030 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.1414;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.47;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4307,424,0 chrXIII 438051 . A T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.18;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3963,400,0 chrXIII 438448 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.78;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4510,489,0 chrXIII 438469 . C T 4689.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.99;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4689,466,0 chrXIII 438537 . C T 5824.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.10;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5824,580,0 chrXIII 438648 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.9838;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.53;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3999,400,0 chrXIII 438807 . C T 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;DP=148;Dels=0.00;FS=4.543;HaplotypeScore=4.9614;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.257;QD=20.53;ReadPosRankSum=-0.702;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3071,287,0 chrXIII 438816 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.260;QD=22.11;ReadPosRankSum=1.667;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3560,370,0 chrXIII 438843 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.43;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4124,415,0 chrXIII 438893 . T A 4471.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=26.15;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4471,439,0 chrXIII 439132 . A G 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.695;QD=23.17;ReadPosRankSum=1.715;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4866,505,0 chrXIII 439294 . A T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.56;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3451,352,0 chrXIII 439396 . T C 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9610;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.178;QD=24.54;ReadPosRankSum=1.602;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4981,489,0 chrXIII 439535 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.240;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.268;QD=22.83;ReadPosRankSum=1.661;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4452,460,0 chrXIII 439546 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.33;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4489,454,0 chrXIII 439726 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.6416;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.33;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3868,394,0 chrXIII 439839 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=4.545;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.567;QD=23.31;ReadPosRankSum=1.670;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3916,423,0 chrXIII 439886 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=19.3057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3991,409,0 chrXIII 439978 . A T 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=8.124;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.530;QD=24.37;ReadPosRankSum=2.399;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3607,375,0 chrXIII 439990 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=4.180;HaplotypeScore=9.2284;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.107;QD=23.90;ReadPosRankSum=1.708;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3466,357,0 chrXIII 440197 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.585;QD=24.64;ReadPosRankSum=1.666;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3893,406,0 chrXIII 440668 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.1969;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.48;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3796,394,0 chrXIII 440791 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=7.110;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.388;QD=20.77;ReadPosRankSum=2.417;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3170,316,0 chrXIII 440792 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=153;Dels=0.00;FS=10.395;HaplotypeScore=3.0340;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.311;QD=20.28;ReadPosRankSum=2.927;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3136,316,0 chrXIII 440977 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.0404;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.10;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3603,364,0 chrXIII 441031 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.07;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3686,358,0 chrXIII 441110 . T G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=172;Dels=0.00;FS=5.036;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.199;QD=22.95;ReadPosRankSum=1.671;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3947,415,0 chrXIII 441184 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3874,385,0 chrXIII 441799 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3747,376,0 chrXIII 442194 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.279;QD=21.83;ReadPosRankSum=1.667;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2369,240,0 chrXIII 442338 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3101,319,0 chrXIII 442381 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2537,252,0 chrXIII 442504 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.83;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2926,289,0 chrXIII 442817 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=24.81;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3424,343,0 chrXIII 442835 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=24.35;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3506,366,0 chrXIII 442877 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.73;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4172,430,0 chrXIII 442886 . T A 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=4.508;HaplotypeScore=4.2568;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.776;QD=21.68;ReadPosRankSum=1.642;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4184,427,0 chrXIII 442916 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=182;Dels=0.00;FS=2.901;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.532;QD=20.92;ReadPosRankSum=2.423;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3807,391,0 chrXIII 442976 . A C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=9.207;HaplotypeScore=14.6566;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.449;QD=24.75;ReadPosRankSum=2.422;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4431,469,0 chrXIII 443054 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=2.808;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.821;QD=21.55;ReadPosRankSum=2.421;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3685,387,0 chrXIII 443057 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.95;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3688,370,0 chrXIII 443179 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1347;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.30;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4276,436,0 chrXIII 443272 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=24.74;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3612,373,0 chrXIII 443373 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1871,186,0 chrXIII 443864 . T A 6540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=266;Dels=0.00;FS=8.701;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.125;QD=24.59;ReadPosRankSum=2.403;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:6540,655,0 chrXIII 443942 . G A 6074.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.8152;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.89;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6074,598,0 chrXIII 443954 . G C 5298.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.08;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5298,556,0 chrXIII 443966 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=3.141;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.149;QD=24.85;ReadPosRankSum=1.715;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:5020,511,0 chrXIII 444110 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.9641;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.97;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4545,451,0 chrXIII 444158 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1411;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.81;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3722,396,0 chrXIII 444227 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.88;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3908,388,0 chrXIII 444299 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.35;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3311,328,0 chrXIII 444383 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.19;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3604,358,0 chrXIII 444677 . A G 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.4206;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.960;QD=23.69;ReadPosRankSum=1.714;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4573,484,0 chrXIII 445007 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=5.3090;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.11;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2266,225,0 chrXIII 445016 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=97;Dels=0.00;FS=6.067;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.547;QD=21.10;ReadPosRankSum=2.864;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2080,216,0 chrXIII 445293 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.90;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2949,303,0 chrXIII 446062 . T C 6655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=264;Dels=0.00;FS=3.016;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.994;QD=25.21;ReadPosRankSum=2.403;SB=-3.475e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:6655,679,0 chrXIII 446215 . T C 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.718;QD=23.22;ReadPosRankSum=1.678;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5898,616,0 chrXIII 446239 . A T 5608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-1.516;QD=23.27;ReadPosRankSum=1.689;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5608,565,0 chrXIII 446260 . T C 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=252;Dels=0.00;FS=4.014;HaplotypeScore=5.7729;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.564;QD=20.77;ReadPosRankSum=1.705;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5233,547,0 chrXIII 446284 . T C 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=235;Dels=0.00;FS=5.022;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.343;QD=18.88;ReadPosRankSum=1.702;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,231:235:99:4436,460,0 chrXIII 446311 . G T 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.3360;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.166;QD=18.24;ReadPosRankSum=-0.693;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:4214,436,0 chrXIII 446362 . A G 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=229;Dels=0.00;FS=2.491;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.676;QD=22.13;ReadPosRankSum=2.969;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5068,532,0 chrXIII 446761 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=197;Dels=0.00;FS=10.397;HaplotypeScore=22.4177;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.838;QD=21.13;ReadPosRankSum=2.859;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:3,191:197:99:4163,444,0 chrXIII 446931 . G A 4248.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.7627;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=23.87;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4248,421,0 chrXIII 446935 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=23.38;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3974,400,0 chrXIII 446980 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.154;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.358;QD=20.62;ReadPosRankSum=1.694;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3794,394,0 chrXIII 446995 . A C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.472;QD=18.35;ReadPosRankSum=1.712;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3284,345,0 chrXIII 447007 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.277;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.657;QD=18.87;ReadPosRankSum=1.695;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3491,366,0 chrXIII 447319 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=3.399;HaplotypeScore=13.6513;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.396;QD=24.05;ReadPosRankSum=1.692;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4329,462,0 chrXIII 447382 . C G 4063.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.76;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4063,424,0 chrXIII 447427 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=3.032;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.667;QD=20.49;ReadPosRankSum=2.379;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3607,384,0 chrXIII 447439 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.14;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3544,366,0 chrXIII 447488 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3267;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.622;QD=19.73;ReadPosRankSum=1.714;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3729,399,0 chrXIII 447556 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.05;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3683,384,0 chrXIII 447559 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.40;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3510,366,0 chrXIII 447610 . T A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.4534;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.94;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3335,340,0 chrXIII 447817 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.15;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3622,364,0 chrXIII 448090 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3601;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.96;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3821,414,0 chrXIII 448333 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.28;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2994,327,0 chrXIII 448334 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.32;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2980,330,0 chrXIII 448374 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.7168;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.47;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3474,343,0 chrXIII 448556 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=26.13;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4390,430,0 chrXIII 448688 . C G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=21.24;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3569,367,0 chrXIII 448690 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=21.11;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3356,357,0 chrXIII 448702 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=162;Dels=0.00;FS=16.666;HaplotypeScore=2.8741;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-1.991;QD=19.68;ReadPosRankSum=3.351;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3221,333,0 chrXIII 448755 . C T 2490 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;QD=16.17;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2523,247,0 chrXIII 448756 . G T 2464 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=16.21;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2497,249,0 chrXIII 448761 . A C 2248 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;MQRankSum=-1.538;QD=13.96;ReadPosRankSum=1.711;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2281,246,0 chrXIII 448778 . A G 2373 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=14.30;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2406,252,0 chrXIII 448794 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=15.19;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2327,231,0 chrXIII 448808 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=161;Dels=0.00;FS=9.224;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;MQRankSum=-1.259;QD=12.46;ReadPosRankSum=2.175;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2039,216,0 chrXIII 448829 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;QD=15.50;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2064,207,0 chrXIII 448851 . T A 1184 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=13.16;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1217,147,0 chrXIII 448852 . C T 1186 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=13.18;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1219,147,0 chrXIII 448855 . G C 1526 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=14.67;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1559,165,0 chrXIII 448906 . G A 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0874;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=-0.357;QD=16.92;ReadPosRankSum=1.127;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2182,234,0 chrXIII 448909 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7434;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=18.07;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2418,237,0 chrXIII 448943 . A T 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.522;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;MQRankSum=1.155;QD=21.47;ReadPosRankSum=1.684;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3124,321,0 chrXIII 449003 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=24.33;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3050,309,0 chrXIII 449012 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=25.43;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3264,322,0 chrXIII 449090 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=27.16;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4590,460,0 chrXIII 449107 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-1.278;QD=25.40;ReadPosRankSum=1.711;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4293,442,0 chrXIII 449173 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=21.98;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2824,285,0 chrXIII 449175 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.226;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;MQRankSum=-0.363;QD=21.11;ReadPosRankSum=1.704;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2672,285,0 chrXIII 449205 . G C 2778 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=18.04;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2811,294,0 chrXIII 449222 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=14.99;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:2536,270,0 chrXIII 449228 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=166;Dels=0.00;FS=6.100;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-0.739;QD=15.44;ReadPosRankSum=2.921;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:2596,270,0 chrXIII 449237 . T A 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=177;Dels=0.00;FS=3.026;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;MQRankSum=-1.375;QD=15.84;ReadPosRankSum=2.422;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:2836,297,0 chrXIII 449640 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=4.088;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.370;QD=24.92;ReadPosRankSum=1.713;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4560,469,0 chrXIII 449694 . T C 4491.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4491,463,0 chrXIII 449784 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3434,334,0 chrXIII 449844 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2966,306,0 chrXIII 449969 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2862,283,0 chrXIII 450012 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2580,255,0 chrXIII 450562 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.19;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4033,406,0 chrXIII 450621 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.261;QD=25.21;ReadPosRankSum=1.649;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3184,327,0 chrXIII 450856 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.31;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3019,304,0 chrXIII 451375 . A C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.76;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4087,421,0 chrXIII 451494 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.237;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.028;QD=22.59;ReadPosRankSum=1.673;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2721,279,0 chrXIII 451502 . T C 2727 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.47;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2760,297,0 chrXIII 451590 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=101;Dels=0.00;FS=6.423;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.012;QD=22.02;ReadPosRankSum=2.401;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2257,231,0 chrXIII 451743 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.90;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3289,328,0 chrXIII 452064 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3695,382,0 chrXIII 452181 . C T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4728,463,0 chrXIII 452639 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.0210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5254,520,0 chrXIII 453023 . A G 5827.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5827,589,0 chrXIII 453257 . T G 6354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=250;Dels=0.00;FS=2.769;HaplotypeScore=17.7177;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.283;QD=25.42;ReadPosRankSum=2.380;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,246:250:99:6354,649,0 chrXIII 453366 . T G 5208.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.5675;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.11;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5208,544,0 chrXIII 453550 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.02;FS=0.000;HaplotypeScore=31.2682;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=24.28;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4224,436,0 chrXIII 453738 . T G 2921 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=24.14;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2954,306,0 chrXIII 453792 . C G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3315,343,0 chrXIII 453833 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3377,352,0 chrXIII 453998 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.88;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2596,270,0 chrXIII 454515 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=190;Dels=0.00;FS=6.774;HaplotypeScore=15.0288;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.755;QD=23.76;ReadPosRankSum=2.423;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:2,185:190:99:4515,466,0 chrXIII 454584 . C T 5031.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.4357;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.28;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5031,499,0 chrXIII 457013 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2587,267,0 chrXIII 458460 . G A 6643.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.45;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6643,655,0 chrXIII 459995 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3406,346,0 chrXIII 460564 . G C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3456,363,0 chrXIII 461207 . A T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.7742;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.95;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3951,394,0 chrXIII 462521 . T C 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=188;Dels=0.00;FS=6.092;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.923;QD=25.65;ReadPosRankSum=2.423;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4822,502,0 chrXIII 463398 . A G 3170 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3203,331,0 chrXIII 464615 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3236,342,0 chrXIII 465080 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3891,385,0 chrXIII 465559 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2810,283,0 chrXIII 465619 . G T 2898 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.11;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2931,298,0 chrXIII 466416 . C A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3830,382,0 chrXIII 468051 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.08;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2995,301,0 chrXIII 468258 . A T 295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=33;Dels=0.00;FS=3.212;HaplotypeScore=13.8041;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.189;QD=8.94;ReadPosRankSum=0.038;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:33:328,33,0 chrXIII 468328 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:63:627,63,0 chrXIII 468499 . A T 1858 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.45;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1891,186,0 chrXIII 468937 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.85;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2158,219,0 chrXIII 469183 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.65;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4077,397,0 chrXIII 469945 . T C 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.225;QD=25.87;ReadPosRankSum=2.422;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4709,487,0 chrXIII 470079 . T G 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=4.337;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.467;QD=23.81;ReadPosRankSum=1.682;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5001,505,0 chrXIII 470271 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.99;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4423,457,0 chrXIII 470373 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.93;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5036,502,0 chrXIII 470412 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.846;QD=22.78;ReadPosRankSum=1.693;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4032,432,0 chrXIII 470916 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=167;Dels=0.00;FS=6.061;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.669;QD=24.04;ReadPosRankSum=2.958;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:4014,421,0 chrXIII 471230 . A G 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.267;QD=25.12;ReadPosRankSum=1.712;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4472,472,0 chrXIII 472273 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3656,361,0 chrXIII 472832 . C T 727 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.1194;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:81:760,81,0 chrXIII 473006 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2824,294,0 chrXIII 473172 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=137;Dels=0.00;FS=8.107;HaplotypeScore=11.4334;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-2.009;QD=21.15;ReadPosRankSum=2.413;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2931,309,0 chrXIII 473251 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.44;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4495,451,0 chrXIII 473405 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=127;Dels=0.00;FS=7.018;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.777;QD=18.98;ReadPosRankSum=2.115;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2443,276,0 chrXIII 473912 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.4771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4645,469,0 chrXIII 474399 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.12;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3398,346,0 chrXIII 474538 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.12;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3168,316,0 chrXIII 476482 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.4715;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.768;QD=24.37;ReadPosRankSum=1.696;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4753,496,0 chrXIII 476585 . C G 6564.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.8714;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.58;SB=-3.632e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6564,688,0 chrXIII 477340 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8949;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.80;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4308,433,0 chrXIII 477381 . C T 5440.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.06;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5440,556,0 chrXIII 477884 . G T 6203.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.28;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:6203,631,0 chrXIII 478297 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.004;DP=136;Dels=0.00;FS=12.372;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.876;QD=23.21;ReadPosRankSum=3.341;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:4,131:136:99:3190,325,0 chrXIII 480711 . C A 935 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=24.61;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:968,96,0 chrXIII 480735 . G T 708 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=29.7887;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=20.82;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:78:741,78,0 chrXIII 480795 . C A 483 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.15;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:51:516,51,0 chrXIII 480858 . G A 54.97 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=6.87;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:87,9,0 chrXIII 480880 . C G 80.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=8.05;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:10:12:113,12,0 chrXIII 481051 . G C 53.97 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=0.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:100:9:86,9,0 chrXIII 481063 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=19.54;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2046,213,0 chrXIII 481095 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.8784;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=18.45;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2321,228,0 chrXIII 481103 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=18.76;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2266,222,0 chrXIII 481193 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.83;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2849,288,0 chrXIII 481198 . T C 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.58;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2878,294,0 chrXIII 481254 . T A 1905 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=21.90;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1938,198,0 chrXIII 481282 . A T 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-1.030;QD=24.28;ReadPosRankSum=1.685;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1830,186,0 chrXIII 481286 . T A 1710 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=23.42;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1743,183,0 chrXIII 481297 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=0.562;QD=23.14;ReadPosRankSum=1.685;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1745,186,0 chrXIII 481413 . A T 2161 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=26.68;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2194,216,0 chrXIII 481481 . G T 2360 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=26.52;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2393,243,0 chrXIII 481531 . G T 2452 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=20.78;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2485,255,0 chrXIII 481534 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.99;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2407,240,0 chrXIII 481553 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.127;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=1.212;QD=17.51;ReadPosRankSum=1.707;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2485,264,0 chrXIII 481556 . G C 2386 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=17.42;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2419,252,0 chrXIII 481610 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=20.38;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2743,285,0 chrXIII 481632 . T A 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=6.892;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-1.677;QD=21.55;ReadPosRankSum=2.368;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2640,267,0 chrXIII 481645 . A T 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=0.268;QD=22.57;ReadPosRankSum=1.704;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2809,291,0 chrXIII 481647 . G T 2713 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=21.88;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2746,285,0 chrXIII 481735 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=25.15;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3420,355,0 chrXIII 481834 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9314;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=25.70;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2911,283,0 chrXIII 481860 . G C 2407 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.93;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2440,261,0 chrXIII 481978 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=25.84;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3721,367,0 chrXIII 482017 . A T 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=158;Dels=0.00;FS=9.060;HaplotypeScore=10.7391;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.552;QD=24.61;ReadPosRankSum=2.418;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3889,391,0 chrXIII 482208 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=2.672;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.874;QD=24.82;ReadPosRankSum=2.328;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3524,367,0 chrXIII 482260 . G C 2766 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.26;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2799,291,0 chrXIII 482549 . C T 6320.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.67;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6320,610,0 chrXIII 482798 . T A 5257.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5257,523,0 chrXIII 483530 . C G 2657 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=24.38;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2690,273,0 chrXIII 483534 . T G 2618 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=24.02;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2651,270,0 chrXIII 483985 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.69;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2885,292,0 chrXIII 484290 . C G 5367.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.46;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,235:239:99:5367,568,0 chrXIII 485130 . G A 6366.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.5762;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.36;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6366,655,0 chrXIII 485475 . G T 5640.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.65;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5640,556,0 chrXIII 485712 . G A 6554.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.84;SB=-3.511e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6554,676,0 chrXIII 486339 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1963,213,0 chrXIII 486464 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.27;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1777,204,0 chrXIII 486465 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.35;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1785,204,0 chrXIII 486520 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=144;Dels=0.00;FS=6.107;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.247;QD=21.68;ReadPosRankSum=2.909;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3155,327,0 chrXIII 487177 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=137;Dels=0.00;FS=6.092;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.356;QD=25.22;ReadPosRankSum=2.948;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:3455,363,0 chrXIII 487393 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.8753;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.69;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3876,397,0 chrXIII 487468 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.11;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4268,433,0 chrXIII 487573 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.69;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3597,355,0 chrXIII 487606 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.70;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3624,370,0 chrXIII 487633 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.66;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3739,385,0 chrXIII 487714 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.015;QD=24.21;ReadPosRankSum=1.702;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2841,297,0 chrXIII 487795 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.15;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2850,291,0 chrXIII 487831 . T C 2869 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.73;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2902,300,0 chrXIII 489701 . C A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.2904;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.38;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3876,391,0 chrXIII 489786 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=9.50;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:2122,207,0 chrXIII 489875 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.51;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4255,424,0 chrXIII 490248 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2999,309,0 chrXIII 490598 . A G 5551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=5.215;HaplotypeScore=12.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=25.35;ReadPosRankSum=1.716;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5551,580,0 chrXIII 490970 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.46;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3946,406,0 chrXIII 491108 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.437;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.785;QD=24.56;ReadPosRankSum=1.707;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3414,360,0 chrXIII 491129 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.94;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3125,319,0 chrXIII 491237 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.430;QD=26.40;ReadPosRankSum=1.705;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3326,348,0 chrXIII 491444 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.9476;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.27;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4098,409,0 chrXIII 491531 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3538;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.072;QD=23.24;ReadPosRankSum=1.685;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3417,357,0 chrXIII 491569 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.36;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3093,310,0 chrXIII 491864 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.97;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2909,297,0 chrXIII 492008 . C G 2129 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.92;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2162,219,0 chrXIII 492021 . T C 2115 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.76;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2148,225,0 chrXIII 492114 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.15;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2400,240,0 chrXIII 492116 . T A 2376 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=25.01;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2409,240,0 chrXIII 492171 . A G 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.178;QD=20.63;ReadPosRankSum=1.599;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1642,168,0 chrXIII 492202 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.91;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1976,198,0 chrXIII 492323 . T G 2460 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=24.36;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2493,258,0 chrXIII 492348 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.389;QD=22.90;ReadPosRankSum=1.697;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2323,234,0 chrXIII 492373 . T A 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=0.096;QD=18.92;ReadPosRankSum=1.700;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2076,210,0 chrXIII 492378 . G C 1961 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=17.99;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1994,207,0 chrXIII 492388 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3188;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=17.04;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1976,195,0 chrXIII 492459 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.04;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3054,315,0 chrXIII 492694 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3360,334,0 chrXIII 492749 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3151,319,0 chrXIII 492833 . C T 5164.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.22;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:5164,499,0 chrXIII 493115 . G A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.57;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5307,538,0 chrXIII 493130 . T C 5205.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.1191;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.24;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5205,561,0 chrXIII 493334 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.81;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3399,328,0 chrXIII 493442 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.85;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3903,388,0 chrXIII 493797 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5593;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=16.81;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2672,282,0 chrXIII 493832 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.24;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3333,345,0 chrXIII 494172 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=5.759;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=26.06;ReadPosRankSum=0.166;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4691,469,0 chrXIII 494247 . G A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4911,514,0 chrXIII 494333 . T G 4922.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4922,514,0 chrXIII 494475 . C T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.03;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4831,478,0 chrXIII 494582 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.21;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2236,222,0 chrXIII 494673 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.72;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1966,198,0 chrXIII 494734 . A G 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.631;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:66:553,66,0 chrXIII 494735 . G A 520 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=15.29;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:553,66,0 chrXIII 494827 . T A 907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.234;QD=24.51;ReadPosRankSum=1.545;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:90:940,90,0 chrXIII 494850 . A C 1008 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1041,108,0 chrXIII 494957 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.95;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3450,363,0 chrXIII 495304 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=27.26;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4579,454,0 chrXIII 495487 . A C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=3.470;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.164;QD=25.28;ReadPosRankSum=1.714;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4778,496,0 chrXIII 495637 . A C 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.482;QD=24.18;ReadPosRankSum=1.714;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4691,484,0 chrXIII 496111 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=3.021;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.512;QD=24.96;ReadPosRankSum=2.422;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4493,466,0 chrXIII 496303 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.81;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2884,297,0 chrXIII 496310 . T G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=9.614;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.750;QD=22.13;ReadPosRankSum=2.410;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2777,288,0 chrXIII 496501 . C T 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=5.5469;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.907;QD=20.57;ReadPosRankSum=1.336;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2234,225,0 chrXIII 496520 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.437;QD=19.38;ReadPosRankSum=1.697;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1990,210,0 chrXIII 496537 . A T 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.150;QD=20.38;ReadPosRankSum=-0.790;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2581,270,0 chrXIII 496565 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=3.529;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.368;QD=20.78;ReadPosRankSum=1.667;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3367,360,0 chrXIII 496640 . T G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.557;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4183;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.710;QD=22.63;ReadPosRankSum=1.688;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3621,367,0 chrXIII 496721 . G A 4834.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.05;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4834,493,0 chrXIII 496739 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5420;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.732;QD=22.62;ReadPosRankSum=-0.162;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4885,478,0 chrXIII 496955 . A T 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=224;Dels=0.00;FS=2.961;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.216;QD=22.43;ReadPosRankSum=2.416;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5024,505,0 chrXIII 497249 . A G 5849.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.17;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5849,619,0 chrXIII 497270 . A G 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=235;Dels=0.00;FS=4.260;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.120;QD=22.57;ReadPosRankSum=1.717;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5303,562,0 chrXIII 497366 . G C 4508.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4508,480,0 chrXIII 497568 . G T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.2105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4336,442,0 chrXIII 497778 . G C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.56;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3261,342,0 chrXIII 498101 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.02;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2600,261,0 chrXIII 498543 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.76;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:103:99:2789,277,0 chrXIII 498573 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.21;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2504,258,0 chrXIII 498745 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.55;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4113,415,0 chrXIII 499134 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.706;QD=25.99;ReadPosRankSum=2.383;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3847,394,0 chrXIII 499191 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.660;QD=24.19;ReadPosRankSum=1.708;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3484,363,0 chrXIII 499738 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=177;Dels=0.00;FS=2.962;HaplotypeScore=12.5692;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.812;QD=25.77;ReadPosRankSum=2.394;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4562,481,0 chrXIII 499915 . A T 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.559;QD=21.95;ReadPosRankSum=1.704;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2755,274,0 chrXIII 499930 . A T 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=132;Dels=0.00;FS=7.185;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.326;QD=22.35;ReadPosRankSum=2.375;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2983,306,0 chrXIII 500738 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.660;QD=25.50;ReadPosRankSum=1.708;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3748,390,0 chrXIII 500788 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.31;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3070,307,0 chrXIII 500943 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.13;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3669,379,0 chrXIII 501060 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.664;QD=20.93;ReadPosRankSum=1.708;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3110,327,0 chrXIII 501084 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=140;Dels=0.00;FS=11.200;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.234;QD=19.19;ReadPosRankSum=2.949;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:2719,279,0 chrXIII 501090 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.11;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2849,291,0 chrXIII 501121 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.68;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2817,294,0 chrXIII 501143 . T G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.13;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3341,351,0 chrXIII 501911 . T G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.620;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.514;QD=24.09;ReadPosRankSum=1.708;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3517,369,0 chrXIII 502051 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.88;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3320,334,0 chrXIII 502120 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.40;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4114,406,0 chrXIII 502616 . T A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.64;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3718,370,0 chrXIII 502640 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.40;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3107,316,0 chrXIII 502704 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.34;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2516,255,0 chrXIII 502787 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.41;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2140,216,0 chrXIII 502941 . A G 2261 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.07;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2294,234,0 chrXIII 502964 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.02;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2128,213,0 chrXIII 503125 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=123;Dels=0.00;FS=6.589;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.796;QD=23.57;ReadPosRankSum=2.346;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,117:123:99:2932,309,0 chrXIII 503212 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.27;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3166,313,0 chrXIII 503284 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.25;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2658,264,0 chrXIII 503379 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.70;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2725,282,0 chrXIII 503388 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.86;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2562,267,0 chrXIII 503456 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=25.30;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2411,246,0 chrXIII 503612 . A T 1932 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=26.83;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1965,201,0 chrXIII 503630 . C A 1455 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=28.8641;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=25.09;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1488,147,0 chrXIII 503664 . C A 1472 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=23.37;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1505,153,0 chrXIII 503711 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=25.14;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1994,198,0 chrXIII 503721 . G T 1999 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=25.30;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2032,201,0 chrXIII 504174 . A T 809 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=17.59;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:842,81,0 chrXIII 504283 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=25.40;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2090,210,0 chrXIII 504337 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=26.35;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1772,177,0 chrXIII 504435 . A T 1632 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.47;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1665,168,0 chrXIII 504447 . C G 1715 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.99;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1748,183,0 chrXIII 504619 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.252;QD=24.23;ReadPosRankSum=1.664;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2480,258,0 chrXIII 504623 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.332;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.347;QD=25.25;ReadPosRankSum=1.697;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2558,264,0 chrXIII 504746 . A C 2128 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=25.04;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2161,216,0 chrXIII 504775 . A T 1942 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.58;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1975,195,0 chrXIII 504829 . G A 1322 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=21.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1355,135,0 chrXIII 504848 . C G 1341 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=21.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1374,141,0 chrXIII 504878 . C T 1370 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=10.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:137:99:1403,138,0 chrXIII 504891 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=0.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,91:91:6:57,6,0 chrXIII 505100 . C A 3039 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=24.91;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3072,307,0 chrXIII 505362 . G C 2307 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.28;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2340,243,0 chrXIII 505690 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.44;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2751,276,0 chrXIII 505942 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=96;Dels=0.00;FS=6.088;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.819;QD=23.77;ReadPosRankSum=2.926;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:3,92:96:99:2315,237,0 chrXIII 505945 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.73;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2382,246,0 chrXIII 506148 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.554;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.509;QD=21.38;ReadPosRankSum=1.460;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2235,231,0 chrXIII 506166 . G C 2195 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.95;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2228,234,0 chrXIII 506403 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.49;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1808,192,0 chrXIII 506583 . T C 2145 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.81;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2178,228,0 chrXIII 506838 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=131;Dels=0.00;FS=6.084;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.023;QD=25.05;ReadPosRankSum=2.916;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3281,328,0 chrXIII 506964 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.36;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3667,364,0 chrXIII 506980 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.764;HaplotypeScore=5.4319;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.203;QD=22.25;ReadPosRankSum=1.600;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3493,360,0 chrXIII 507039 . G C 2806 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.90;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2839,303,0 chrXIII 507297 . C G 2493 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.9233;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.87;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2526,261,0 chrXIII 507637 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=166;Dels=0.00;FS=2.583;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.503;QD=24.07;ReadPosRankSum=2.957;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3995,412,0 chrXIII 507712 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.068;QD=24.61;ReadPosRankSum=1.693;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4430,457,0 chrXIII 508047 . G T 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.059;DP=154;Dels=0.00;FS=217.876;HaplotypeScore=31.8843;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=0.400;QD=1.94;ReadPosRankSum=-4.158;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,44:154:99:328,0,1927 chrXIII 508389 . G A 5522.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=21.0559;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5522,553,0 chrXIII 508549 . T C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=213;Dels=0.00;FS=7.373;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.446;QD=23.80;ReadPosRankSum=2.380;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5069,535,0 chrXIII 508768 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3969,403,0 chrXIII 508918 . T G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.8281;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.617;QD=23.45;ReadPosRankSum=1.708;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3470,369,0 chrXIII 510091 . G A 5847.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=26.22;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5847,577,0 chrXIII 510373 . A T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.07;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4796,478,0 chrXIII 510615 . A C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.76;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4276,451,0 chrXIII 510643 . G C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.14;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3822,402,0 chrXIII 510966 . G A 7562.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=13.5487;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.37;SB=-4.444e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:7562,802,0 chrXIII 510989 . G A 7462.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.03;SB=-4.444e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7462,751,0 chrXIII 511205 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=20.7000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.80;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3879,394,0 chrXIII 511256 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.01;FS=4.287;HaplotypeScore=11.4890;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-1.151;QD=27.33;ReadPosRankSum=1.711;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4455,457,0 chrXIII 511660 . C G 1106 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=17.84;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1139,120,0 chrXIII 511679 . A T 1165 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.57;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1198,117,0 chrXIII 511826 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.24;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1381,156,0 chrXIII 511892 . T A 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.302;QD=27.98;ReadPosRankSum=1.677;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1796,180,0 chrXIII 511911 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=27.02;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1546,153,0 chrXIII 511953 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=25.12;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1465,144,0 chrXIII 512124 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=16.49;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1534,162,0 chrXIII 512136 . T C 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;MQRankSum=-0.816;QD=15.46;ReadPosRankSum=1.573;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1378,150,0 chrXIII 512151 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=6.372;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;MQRankSum=-1.204;QD=14.82;ReadPosRankSum=2.367;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1352,147,0 chrXIII 512161 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.15;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1542,165,0 chrXIII 512189 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.55;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2008,204,0 chrXIII 512254 . C A 2461 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=24.37;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2494,246,0 chrXIII 512272 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.11;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2376,246,0 chrXIII 512330 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=21.25;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2711,294,0 chrXIII 512343 . G T 3010 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=24.47;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3043,321,0 chrXIII 512366 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.01;FS=9.963;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=-0.336;QD=20.15;ReadPosRankSum=2.940;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2411,264,0 chrXIII 512368 . A G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.371;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;MQRankSum=0.690;QD=20.25;ReadPosRankSum=1.671;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2342,258,0 chrXIII 512447 . A T 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.01;FS=4.137;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.297;QD=17.29;ReadPosRankSum=1.707;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2471,246,0 chrXIII 512449 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=16.20;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2333,246,0 chrXIII 512520 . A G 2866 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.83;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2899,318,0 chrXIII 512540 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=147.3251;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=16.71;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3175,327,0 chrXIII 512558 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=4.592;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;MQRankSum=1.604;QD=12.16;ReadPosRankSum=1.677;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:2356,249,0 chrXIII 512693 . G C 5848.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=24.57;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5848,610,0 chrXIII 512725 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=3.734;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=0.959;QD=22.43;ReadPosRankSum=1.716;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4868,502,0 chrXIII 512809 . G A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=24.04;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4616,460,0 chrXIII 512964 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=24.42;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3468,361,0 chrXIII 513020 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=4.055;HaplotypeScore=10.4333;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.270;QD=24.34;ReadPosRankSum=1.712;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4235,442,0 chrXIII 513049 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=24.35;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4529,457,0 chrXIII 513096 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=21.33;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3306,342,0 chrXIII 513097 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.74;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3164,336,0 chrXIII 513130 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.499;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.012;QD=21.94;ReadPosRankSum=1.708;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3148,333,0 chrXIII 513160 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=20.28;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2791,279,0 chrXIII 513161 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=139;Dels=0.00;FS=2.576;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-0.478;QD=19.01;ReadPosRankSum=2.802;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:2676,282,0 chrXIII 513259 . C A 3920.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.97;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3920,400,0 chrXIII 513285 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=23.42;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3054,306,0 chrXIII 513345 . T C 1953 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=20.78;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1986,210,0 chrXIII 513350 . G A 2007 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=21.58;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2040,213,0 chrXIII 513352 . G T 2041 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=21.95;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2074,213,0 chrXIII 513381 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=6.141;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=-1.490;QD=17.47;ReadPosRankSum=2.931;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1797,195,0 chrXIII 513415 . G A 1503 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=16.52;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1536,153,0 chrXIII 513420 . A T 1556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;MQRankSum=-0.689;QD=16.73;ReadPosRankSum=1.695;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1589,156,0 chrXIII 513425 . A T 1371 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=0.577;QD=15.76;ReadPosRankSum=1.692;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1404,138,0 chrXIII 513448 . G T 1528 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.56;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1561,156,0 chrXIII 513778 . C G 4649.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4649,496,0 chrXIII 514118 . G A 797 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=16.60;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:830,84,0 chrXIII 514124 . T A 828 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=16.24;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:861,84,0 chrXIII 514146 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.20;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1125,117,0 chrXIII 514194 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.41;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1380,147,0 chrXIII 514210 . G C 1253 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.88;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1286,132,0 chrXIII 514327 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-1.590;QD=18.48;ReadPosRankSum=1.685;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1382,144,0 chrXIII 514342 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.8608;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.24;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1726,177,0 chrXIII 514631 . A T 5540.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.01;FS=0.000;HaplotypeScore=23.1888;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.01;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5540,556,0 chrXIII 515831 . T C 5284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=227;Dels=0.00;FS=10.963;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.249;QD=23.28;ReadPosRankSum=2.853;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:5284,556,0 chrXIII 516109 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.61;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4226,436,0 chrXIII 516134 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.50;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4055,415,0 chrXIII 540088 . C A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.06;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4115,424,0 chrXIII 543392 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=137;Dels=0.00;FS=3.008;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.280;QD=26.03;ReadPosRankSum=2.395;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3566,361,0 chrXIII 544261 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.900;HaplotypeScore=8.8433;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.655;QD=25.05;ReadPosRankSum=1.681;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3382,354,0 chrXIII 547537 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3729,370,0 chrXIII 547627 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.113;QD=25.79;ReadPosRankSum=1.793;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3894,411,0 chrXIII 548118 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.645;QD=25.99;ReadPosRankSum=1.707;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3561,373,0 chrXIII 548999 . G C 3624.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.48;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3624,373,0 chrXIII 549287 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3219,313,0 chrXIII 552041 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.58;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3915,385,0 chrXIII 552364 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.46;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3437,343,0 chrXIII 554421 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.53;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3287,351,0 chrXIII 554664 . A G 762 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.58;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:795,87,0 chrXIII 554724 . T G 993 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1026,111,0 chrXIII 554817 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=27.17;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2804,274,0 chrXIII 554844 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.37;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2798,283,0 chrXIII 555036 . G C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.7214;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.65;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4123,433,0 chrXIII 555078 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=170;Dels=0.00;FS=6.365;HaplotypeScore=10.2144;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=2.201;QD=24.02;ReadPosRankSum=2.406;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4084,424,0 chrXIII 555522 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=3.490;HaplotypeScore=10.4330;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.886;QD=25.06;ReadPosRankSum=1.712;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4336,436,0 chrXIII 555756 . G A 3893.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.95;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3893,388,0 chrXIII 555852 . G A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.0120;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.17;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3746,370,0 chrXIII 556209 . T C 2971 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.15;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3004,318,0 chrXIII 556437 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.23;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2581,250,0 chrXIII 556842 . G A 4849.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=26.50;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4849,481,0 chrXIII 556916 . C G 4493.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.52;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4493,457,0 chrXIII 557358 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.14;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2785,285,0 chrXIII 557425 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.6417;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.23;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3345,348,0 chrXIII 558486 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6042;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.23;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4002,423,0 chrXIII 558853 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=25.30;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2032,210,0 chrXIII 558877 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=61.5789;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=24.35;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1981,195,0 chrXIII 558987 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.38;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1786,183,0 chrXIII 559132 . G T 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9069;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.257;QD=22.64;ReadPosRankSum=-0.154;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2320,234,0 chrXIII 559312 . A C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.85;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3506,372,0 chrXIII 559371 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3607,381,0 chrXIII 559878 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.49;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2531,252,0 chrXIII 560210 . A C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.24;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3307,348,0 chrXIII 560261 . G C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=26.08;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3286,337,0 chrXIII 560317 . C T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.38;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3438,346,0 chrXIII 560337 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.72;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3485,355,0 chrXIII 560911 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.26;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3629,361,0 chrXIII 560915 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=4.640;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=0.138;QD=21.62;ReadPosRankSum=1.711;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3545,367,0 chrXIII 561020 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.66;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4558,451,0 chrXIII 561132 . G C 4790.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.6880;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.60;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4790,493,0 chrXIII 561390 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.81;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3746,387,0 chrXIII 561510 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=169;Dels=0.00;FS=2.664;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.651;QD=24.00;ReadPosRankSum=2.406;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4056,421,0 chrXIII 561662 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.366;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.409;QD=23.00;ReadPosRankSum=1.693;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2080,219,0 chrXIII 561922 . A T 599 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:66:632,66,0 chrXIII 562601 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.95;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3040,318,0 chrXIII 562620 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=3.598;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.504;QD=22.04;ReadPosRankSum=1.710;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3527,366,0 chrXIII 562752 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.407;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.396;QD=25.77;ReadPosRankSum=1.665;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2687,282,0 chrXIII 562796 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.048;HaplotypeScore=10.5747;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.199;QD=24.97;ReadPosRankSum=1.673;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2979,306,0 chrXIII 562848 . T C 3000 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=123.8262;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.39;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3033,318,0 chrXIII 562900 . G T 2358 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.86;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2391,237,0 chrXIII 562933 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=6.098;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-1.664;QD=19.55;ReadPosRankSum=2.891;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2398,243,0 chrXIII 562955 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.179;QD=19.68;ReadPosRankSum=1.587;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2395,252,0 chrXIII 563052 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=26.37;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3349,343,0 chrXIII 563079 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=22.43;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3409,337,0 chrXIII 563083 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.73;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3143,327,0 chrXIII 563456 . G A 4954.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.2030;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4954,514,0 chrXIII 563599 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.08;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5041,505,0 chrXIII 563796 . G T 2895 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.44;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2928,289,0 chrXIII 563800 . G T 2666 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.35;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2699,270,0 chrXIII 563933 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7130;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.70;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3907,391,0 chrXIII 564175 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.82;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2064,213,0 chrXIII 564541 . T A 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=3.741;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.732;QD=23.56;ReadPosRankSum=1.708;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3346,340,0 chrXIII 565076 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3516,355,0 chrXIII 565181 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.40;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2558,276,0 chrXIII 565236 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.8538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.18;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3200,313,0 chrXIII 565315 . T A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3373,331,0 chrXIII 566017 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=150;Dels=0.00;FS=20.578;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.017;QD=23.75;ReadPosRankSum=3.568;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:5,145:150:99:3562,381,0 chrXIII 566147 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.0240;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.81;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3771,370,0 chrXIII 566257 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.69;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3925,409,0 chrXIII 566485 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.40;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3720,388,0 chrXIII 566498 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.83;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4122,406,0 chrXIII 566527 . T A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.26;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4073,403,0 chrXIII 566650 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.35;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3575,355,0 chrXIII 566965 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.59;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3615,373,0 chrXIII 566975 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.326;QD=21.83;ReadPosRankSum=1.711;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3537,375,0 chrXIII 567013 . A T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.92;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3622,367,0 chrXIII 567075 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3859,382,0 chrXIII 567163 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.920;QD=24.09;ReadPosRankSum=1.708;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3493,358,0 chrXIII 567577 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.65;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3697,379,0 chrXIII 567592 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.177;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.508;QD=24.22;ReadPosRankSum=1.706;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3255,331,0 chrXIII 567978 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=6.888;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.531;QD=23.47;ReadPosRankSum=2.375;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3131,327,0 chrXIII 568056 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.86;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3265,345,0 chrXIII 568072 . T A 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.261;QD=21.21;ReadPosRankSum=1.708;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3129,307,0 chrXIII 568174 . A C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.441;QD=24.16;ReadPosRankSum=1.674;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2932,295,0 chrXIII 568210 . G C 2352 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.00;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2385,246,0 chrXIII 568220 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.84;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2523,247,0 chrXIII 568443 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.04;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3163,310,0 chrXIII 568527 . G A 4628.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.9187;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.75;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4628,457,0 chrXIII 568577 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=9.085;HaplotypeScore=7.5742;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.390;QD=22.63;ReadPosRankSum=2.405;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3802,391,0 chrXIII 568585 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=9.195;HaplotypeScore=8.3082;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.164;QD=22.07;ReadPosRankSum=2.392;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3862,403,0 chrXIII 569109 . T A 5073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=3.543;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.116;QD=24.39;ReadPosRankSum=1.632;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5073,535,0 chrXIII 569786 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.5052;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.86;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2968,295,0 chrXIII 569867 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.04;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3531,352,0 chrXIII 570462 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.87;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2897,312,0 chrXIII 571024 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3968;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.89;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3415,337,0 chrXIII 571039 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.88;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3191,333,0 chrXIII 571067 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.794;QD=22.78;ReadPosRankSum=1.660;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3303,337,0 chrXIII 571144 . A G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.153;QD=23.67;ReadPosRankSum=2.417;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3693,385,0 chrXIII 571170 . G T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=24.02;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3507,352,0 chrXIII 571183 . T A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.10;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3280,328,0 chrXIII 571224 . A G 2261 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.53;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2294,240,0 chrXIII 571441 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.43;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3992,409,0 chrXIII 571835 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4211,430,0 chrXIII 572003 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.38;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4459,454,0 chrXIII 572164 . A T 5861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=3.345;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.048;QD=27.13;ReadPosRankSum=1.716;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5861,607,0 chrXIII 572364 . T G 5014.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.11;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5014,523,0 chrXIII 572476 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=181;Dels=0.00;FS=12.160;HaplotypeScore=15.3022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.084;QD=25.18;ReadPosRankSum=2.961;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:4558,475,0 chrXIII 572646 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.54;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2400,246,0 chrXIII 572799 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.590;QD=21.37;ReadPosRankSum=1.656;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1978,204,0 chrXIII 572826 . T C 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.315;QD=23.14;ReadPosRankSum=1.649;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1954,204,0 chrXIII 572957 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=23.85;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1917,195,0 chrXIII 572966 . G T 1778 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=21.42;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1811,186,0 chrXIII 572969 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.61;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1887,192,0 chrXIII 572995 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.91;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1797,177,0 chrXIII 573126 . G T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=26.05;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3361,345,0 chrXIII 573151 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8166;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=26.21;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3801,382,0 chrXIII 573263 . A G 4879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=4.432;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.697;QD=24.64;ReadPosRankSum=1.627;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4879,528,0 chrXIII 573340 . T A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.29;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5008,496,0 chrXIII 573404 . C T 6550.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.4150;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.59;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6550,652,0 chrXIII 573842 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.69;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2807,280,0 chrXIII 574079 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.15;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2275,237,0 chrXIII 574080 . C G 2197 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.73;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2230,234,0 chrXIII 574719 . A T 5306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=9.715;HaplotypeScore=8.8821;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.138;QD=26.01;ReadPosRankSum=2.377;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:5306,535,0 chrXIII 574866 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.4449;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.18;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4983,520,0 chrXIII 575028 . T C 6333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=243;Dels=0.00;FS=2.831;HaplotypeScore=12.2332;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.746;QD=26.06;ReadPosRankSum=2.409;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:6333,661,0 chrXIII 575060 . A G 6494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=258;Dels=0.00;FS=7.933;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.848;QD=25.17;ReadPosRankSum=2.421;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:6494,679,0 chrXIII 575098 . G A 6237.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=26.10;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6237,616,0 chrXIII 575128 . G T 5340.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.72;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5340,541,0 chrXIII 575668 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=93;Dels=0.00;FS=3.058;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.529;QD=24.56;ReadPosRankSum=2.369;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,89:93:99:2317,240,0 chrXIII 576343 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.71;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3706,388,0 chrXIII 577153 . A T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.36;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3727,379,0 chrXIII 577405 . C T 4944.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.78;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4944,484,0 chrXIII 577667 . G C 4263.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.10;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4263,436,0 chrXIII 577768 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=196;Dels=0.00;FS=9.647;HaplotypeScore=15.0153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.236;QD=25.28;ReadPosRankSum=2.964;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4954,505,0 chrXIII 578132 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=182;Dels=0.00;FS=10.896;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.561;QD=20.53;ReadPosRankSum=2.961;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3737,391,0 chrXIII 578498 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2237,231,0 chrXIII 578615 . T G 2370 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2403,249,0 chrXIII 579159 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=24.63;ReadPosRankSum=1.708;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3621,378,0 chrXIII 579347 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.423;QD=23.73;ReadPosRankSum=1.644;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3726,376,0 chrXIII 579452 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=3.457;HaplotypeScore=15.0077;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.148;QD=25.64;ReadPosRankSum=1.713;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4769,496,0 chrXIII 579563 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.03;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4034,415,0 chrXIII 579707 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4486;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-2.402;QD=24.50;ReadPosRankSum=2.418;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3797,391,0 chrXIII 579968 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.14;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3659,384,0 chrXIII 580121 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=8.054;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.237;QD=25.61;ReadPosRankSum=2.389;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:4149,424,0 chrXIII 581966 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2944,303,0 chrXIII 582482 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.7654;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.39;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4936,502,0 chrXIII 582716 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.60;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3256,334,0 chrXIII 582869 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9589;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.20;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2655,270,0 chrXIII 583556 . A G 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=3.560;HaplotypeScore=15.0722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.171;QD=24.35;ReadPosRankSum=1.715;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4918,508,0 chrXIII 583831 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3778,391,0 chrXIII 584026 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.62;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2602,267,0 chrXIII 584211 . A C 1993 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2026,210,0 chrXIII 584328 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2972,301,0 chrXIII 584569 . C T 5350.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.35;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5350,520,0 chrXIII 584623 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8709;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.24;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4114,430,0 chrXIII 584832 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3180,328,0 chrXIII 584970 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=26.01;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3512,349,0 chrXIII 585021 . T G 3210.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.51;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3244,336,0 chrXIII 585141 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.568;QD=24.19;ReadPosRankSum=1.624;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3153,330,0 chrXIII 585165 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=6.640;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.565;QD=23.80;ReadPosRankSum=2.370;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2984,318,0 chrXIII 585609 . A G 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.837;QD=22.24;ReadPosRankSum=1.693;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2035,216,0 chrXIII 585807 . A T 2953 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.85;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2986,304,0 chrXIII 585859 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.58;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3037,318,0 chrXIII 585987 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.12;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3246,334,0 chrXIII 586147 . C G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.44;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3343,348,0 chrXIII 586154 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=2.707;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.057;QD=21.03;ReadPosRankSum=2.400;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3209,339,0 chrXIII 586726 . T A 2867 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=26.30;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2900,289,0 chrXIII 586744 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=23.64;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2657,264,0 chrXIII 586759 . T C 2475 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.92;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2508,261,0 chrXIII 586795 . T G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.617;QD=21.05;ReadPosRankSum=1.692;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1885,192,0 chrXIII 587257 . T G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8378;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4132,433,0 chrXIII 587493 . T G 1411 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.06;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1444,144,0 chrXIII 587559 . T G 1749 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.34;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1782,180,0 chrXIII 587600 . A G 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.162;QD=22.37;ReadPosRankSum=1.678;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1465,156,0 chrXIII 587695 . T C 165.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=7.5454;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.759;QD=5.50;ReadPosRankSum=0.023;SB=-8.106e+01 GT:AD:DP:GQ:PL 1/1:8,22:30:21:198,21,0 chrXIII 587939 . A G 5281.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.4586;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.76;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5281,532,0 chrXIII 587969 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.469;QD=24.72;ReadPosRankSum=1.642;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4820,519,0 chrXIII 588112 . C T 5563.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=20.9661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.08;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:5563,553,0 chrXIII 588348 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.6447;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=23.04;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4516,469,0 chrXIII 588573 . C T 3633.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=272;Dels=0.00;FS=5.875;HaplotypeScore=15.6289;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;MQRankSum=1.429;QD=13.36;ReadPosRankSum=2.014;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:35,235:272:99:3633,370,0 chrXIII 588576 . T C 3126 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.930;DP=259;Dels=0.00;FS=2.269;HaplotypeScore=17.9949;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=0.528;QD=12.07;ReadPosRankSum=3.005;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:39,220:259:99:3159,242,0 chrXIII 588579 . A T 3374.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=253;Dels=0.00;FS=4.487;HaplotypeScore=33.3548;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-1.092;QD=13.34;ReadPosRankSum=1.716;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,221:253:99:3374,340,0 chrXIII 588585 . T C 3055 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=305;Dels=0.00;FS=2.230;HaplotypeScore=123.8370;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;MQRankSum=1.602;QD=10.02;ReadPosRankSum=7.816;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:84,219:305:99:3088,192,0 chrXIII 588609 . C T 1132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.786;DP=261;Dels=0.00;FS=1.579;HaplotypeScore=409.8596;MLEAC=1;MLEAF=0.500;MQ=30.85;MQ0=0;MQRankSum=0.889;QD=4.34;ReadPosRankSum=-1.325;SB=-7.580e+02 GT:AD:DP:GQ:PL 0/1:155,106:261:99:1162,0,460 chrXIII 588615 . C T 583.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.509;DP=252;Dels=0.00;FS=0.478;HaplotypeScore=297.5021;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=0;MQRankSum=0.559;QD=2.31;ReadPosRankSum=-1.837;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:116,136:252:99:613,0,730 chrXIII 588621 . C T 293.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.608;DP=247;Dels=0.00;FS=0.488;HaplotypeScore=186.3907;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=0.381;QD=1.19;ReadPosRankSum=-3.052;SB=-1.117e+03 GT:AD:DP:GQ:PL 0/1:109,138:247:99:323,0,954 chrXIII 588624 . T C 120.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.571;DP=244;Dels=0.00;FS=6.610;HaplotypeScore=220.2773;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=-0.909;QD=0.49;ReadPosRankSum=-2.091;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:200,44:244:99:150,0,1388 chrXIII 588627 . C T 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.875;DP=252;Dels=0.01;FS=13.962;HaplotypeScore=195.1317;MLEAC=1;MLEAF=0.500;MQ=29.19;MQ0=0;MQRankSum=-1.195;QD=0.91;ReadPosRankSum=-4.098;SB=-3.150e+02 GT:AD:DP:GQ:PL 0/1:177,72:249:99:259,0,1266 chrXIII 588645 . T C 1271.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.573;DP=238;Dels=0.00;FS=15.566;HaplotypeScore=177.0940;MLEAC=1;MLEAF=0.500;MQ=31.33;MQ0=0;MQRankSum=1.303;QD=5.34;ReadPosRankSum=-1.240;SB=-1.914e+03 GT:AD:DP:GQ:PL 0/1:66,172:238:99:1301,0,503 chrXIII 588660 . C T 600.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.392;DP=287;Dels=0.02;FS=28.289;HaplotypeScore=225.4981;MLEAC=1;MLEAF=0.500;MQ=34.43;MQ0=0;MQRankSum=2.872;QD=2.09;ReadPosRankSum=0.824;SB=-2.685e+03 GT:AD:DP:GQ:PL 0/1:49,233:282:99:630,0,541 chrXIII 588661 . T G 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.747;DP=294;Dels=0.00;FS=26.348;HaplotypeScore=225.4981;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=0;MQRankSum=-4.850;QD=1.64;ReadPosRankSum=-0.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,48:294:99:512,0,696 chrXIII 588678 . A C 3158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=275;Dels=0.00;FS=19.854;HaplotypeScore=2.9681;MLEAC=1;MLEAF=0.500;MQ=39.86;MQ0=0;MQRankSum=4.706;QD=11.48;ReadPosRankSum=8.755;SB=-2.077e+03 GT:AD:DP:GQ:PL 0/1:36,239:275:99:3188,0,121 chrXIII 588681 . C T 3447.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.358;DP=270;Dels=0.00;FS=22.993;HaplotypeScore=6.7661;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=0;MQRankSum=3.737;QD=12.77;ReadPosRankSum=7.716;SB=-2.197e+03 GT:AD:DP:GQ:PL 0/1:26,244:270:11:3447,0,11 chrXIII 588684 . G C 3845.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.3228;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-1.129;QD=14.73;ReadPosRankSum=1.536;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,246:261:99:3845,414,0 chrXIII 588927 . T A 2686 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.16;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2719,282,0 chrXIII 589273 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3932,394,0 chrXIII 589360 . A C 2702 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.91;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2735,279,0 chrXIII 589414 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2905,300,0 chrXIII 589588 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3373,351,0 chrXIII 589854 . A G 2575 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2608,267,0 chrXIII 590222 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=3.473;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.576;QD=22.27;ReadPosRankSum=1.713;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3986,426,0 chrXIII 590322 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.087;DP=202;Dels=0.00;FS=6.708;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.303;QD=23.48;ReadPosRankSum=4.144;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:6,195:202:99:4742,508,0 chrXIII 590486 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=187;Dels=0.00;FS=6.088;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.468;QD=25.09;ReadPosRankSum=2.963;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4692,475,0 chrXIII 590607 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3683;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.25;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4017,400,0 chrXIII 590621 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.42;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4063,429,0 chrXIII 590865 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.8404;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.09;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3645,387,0 chrXIII 591086 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.39;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3800,370,0 chrXIII 591144 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=3.490;HaplotypeScore=6.3880;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.439;QD=23.29;ReadPosRankSum=1.706;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3201,333,0 chrXIII 591198 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.979;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.520;QD=20.07;ReadPosRankSum=1.713;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3633,384,0 chrXIII 591204 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=179;Dels=0.00;FS=5.559;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.421;QD=19.75;ReadPosRankSum=2.927;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3535,375,0 chrXIII 591330 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.22;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4338,445,0 chrXIII 591678 . G A 6966.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.61;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6966,694,0 chrXIII 591723 . A G 7375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=283;Dels=0.00;FS=7.814;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.196;QD=26.06;ReadPosRankSum=2.432;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:2,281:283:99:7375,751,0 chrXIII 591795 . A G 6811.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.68;SB=-3.503e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6811,676,0 chrXIII 591930 . G A 6027.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.7469;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.60;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6027,613,0 chrXIII 592037 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.7594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3653,361,0 chrXIII 592096 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;DP=160;Dels=0.00;FS=3.149;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.710;QD=25.03;ReadPosRankSum=0.556;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4005,415,0 chrXIII 592200 . C T 4416.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.29;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4416,439,0 chrXIII 592335 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.08;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3488,358,0 chrXIII 592371 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.40;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3051,307,0 chrXIII 592658 . T G 6160.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.3832;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.44;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6160,640,0 chrXIII 592706 . T C 5890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=263;Dels=0.00;FS=9.746;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.130;QD=22.40;ReadPosRankSum=2.994;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:4,257:263:99:5890,598,0 chrXIII 592735 . T C 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=216;Dels=0.00;FS=14.009;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.782;QD=23.02;ReadPosRankSum=2.957;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:3,209:216:99:4972,505,0 chrXIII 594280 . T A 6152.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.5259;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.41;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6152,628,0 chrXIII 594659 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=180;Dels=0.00;FS=3.370;HaplotypeScore=16.9628;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.846;QD=25.11;ReadPosRankSum=1.712;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:4520,466,0 chrXIII 595437 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3418,349,0 chrXIII 595697 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.51;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3393,346,0 chrXIII 596239 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4595,466,0 chrXIII 596706 . A C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.266;QD=22.70;ReadPosRankSum=0.713;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2780,291,0 chrXIII 597167 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3475,352,0 chrXIII 597636 . A C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=3.752;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.873;QD=25.25;ReadPosRankSum=1.646;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:3139,322,0 chrXIII 597709 . G C 2987 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3020,312,0 chrXIII 597926 . G T 2703 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2736,274,0 chrXIII 598154 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4529,463,0 chrXIII 598391 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4209,424,0 chrXIII 599192 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.86;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3848,402,0 chrXIII 599730 . A G 3489.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=179;Dels=0.00;FS=13.690;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-2.729;QD=19.49;ReadPosRankSum=3.586;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:6,173:179:99:3489,363,0 chrXIII 599732 . C T 3509.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;MQRankSum=0.577;QD=19.49;ReadPosRankSum=0.096;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3509,363,0 chrXIII 599735 . T C 3666.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-0.178;QD=19.71;ReadPosRankSum=1.354;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3666,376,0 chrXIII 599973 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.5760;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.39;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4417,442,0 chrXIII 600354 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=2;QD=23.17;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4333,445,0 chrXIII 600543 . A T 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=1;MQRankSum=-1.646;QD=27.34;ReadPosRankSum=1.711;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4429,433,0 chrXIII 600558 . C T 3841.01 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=9;QD=25.61;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:8,141:150:99:3841,388,0 chrXIII 600564 . T A 3781.01 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=12;QD=24.88;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:10,142:152:99:3781,373,0 chrXIII 600729 . C T 2953 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=9;QD=21.09;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:7,133:140:99:2986,303,0 chrXIII 600819 . C T 1540 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DP=106;Dels=0.00;FS=4.236;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=44;MQRankSum=-0.880;QD=14.53;ReadPosRankSum=-0.710;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:17,88:106:99:1573,135,0 chrXIII 601971 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.6017;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=2;QD=24.33;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4622,478,0 chrXIII 602082 . C T 4763.01 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=4;QD=24.06;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4763,475,0 chrXIII 602255 . G A 5845.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.3951;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=24.98;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5845,589,0 chrXIII 602462 . T C 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=203;Dels=0.00;FS=10.975;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.658;QD=25.00;ReadPosRankSum=2.906;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:5074,529,0 chrXIII 603083 . T C 3596.01 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.9779;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=9;QD=22.76;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:7,150:158:99:3596,370,0 chrXIII 603086 . T C 3650.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=160;Dels=0.00;FS=3.487;HaplotypeScore=2.7792;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=6;MQRankSum=-1.192;QD=22.81;ReadPosRankSum=1.710;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:6,153:160:99:3650,370,0 chrXIII 603801 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.464;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.807;QD=25.08;ReadPosRankSum=1.706;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3286,348,0 chrXIII 605048 . C T 5246.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.2904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5246,538,0 chrXIII 605479 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2478,249,0 chrXIII 605879 . G T 2477 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.77;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2510,252,0 chrXIII 607501 . G C 6162.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.1497;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.46;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6162,649,0 chrXIII 609006 . C T 5715.01 filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=5;QD=23.71;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5715,583,0 chrXIII 609090 . T C 1316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DP=184;Dels=0.00;FS=64.624;HaplotypeScore=17.4197;MLEAC=1;MLEAF=0.500;MQ=31.28;MQ0=19;MQRankSum=-4.040;QD=7.15;ReadPosRankSum=1.655;SB=-1.085e+03 GT:AD:DP:GQ:PL 0/1:76,108:184:99:1346,0,842 chrXIII 609091 . G A 1300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.557;DP=182;Dels=0.00;FS=78.891;HaplotypeScore=14.6397;MLEAC=1;MLEAF=0.500;MQ=31.30;MQ0=19;MQRankSum=-3.381;QD=7.14;ReadPosRankSum=1.039;SB=-1.081e+03 GT:AD:DP:GQ:PL 0/1:74,108:182:99:1330,0,808 chrXIII 609102 . C T 991.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.489;DP=159;Dels=0.00;FS=124.284;HaplotypeScore=22.5963;MLEAC=1;MLEAF=0.500;MQ=31.36;MQ0=18;MQRankSum=-1.611;QD=6.23;ReadPosRankSum=-3.671;SB=-9.040e+02 GT:AD:DP:GQ:PL 0/1:70,89:159:99:1021,0,854 chrXIII 609105 . C T 819.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.346;DP=151;Dels=0.00;FS=103.405;HaplotypeScore=124.0026;MLEAC=1;MLEAF=0.500;MQ=31.69;MQ0=16;MQRankSum=-2.738;QD=5.42;ReadPosRankSum=-3.921;SB=-7.720e+02 GT:AD:DP:GQ:PL 0/1:71,80:151:99:849,0,867 chrXIII 609118 . A G 354.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.273;DP=120;Dels=0.00;FS=79.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.45;MQ0=14;MQRankSum=-2.193;QD=2.95;ReadPosRankSum=-4.455;SB=-5.080e+02 GT:AD:DP:GQ:PL 0/1:67,53:120:99:384,0,971 chrXIII 609123 . C T 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;DP=107;Dels=0.00;FS=74.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=13;MQRankSum=-3.206;QD=2.73;ReadPosRankSum=-3.898;SB=-4.670e+02 GT:AD:DP:GQ:PL 0/1:65,42:107:99:322,0,948 chrXIII 609126 . T A 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;DP=103;Dels=0.00;FS=69.846;HaplotypeScore=46.6664;MLEAC=1;MLEAF=0.500;MQ=33.22;MQ0=13;MQRankSum=-3.460;QD=1.45;ReadPosRankSum=-3.705;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:65,38:103:99:179,0,979 chrXIII 609132 . T C 905.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.974;DP=89;Dels=0.00;FS=23.320;HaplotypeScore=51.1683;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=11;MQRankSum=2.818;QD=10.17;ReadPosRankSum=2.672;SB=2.98 GT:AD:DP:GQ:PL 1/1:28,61:89:26:938,26,0 chrXIII 609147 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.034;DP=74;Dels=0.00;FS=38.420;HaplotypeScore=25.8254;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=-2.503;QD=0.26;ReadPosRankSum=-1.234;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:49,25:74:49:49,0,586 chrXIII 609150 . T A 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;DP=80;Dels=0.00;FS=57.727;HaplotypeScore=49.5203;MLEAC=1;MLEAF=0.500;MQ=34.43;MQ0=0;MQRankSum=-2.419;QD=0.91;ReadPosRankSum=-1.279;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:54,26:80:99:103,0,575 chrXIII 609153 . C T 207.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.605;DP=77;Dels=0.00;FS=59.705;HaplotypeScore=35.4837;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=-1.755;QD=2.69;ReadPosRankSum=-2.043;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:44,33:77:99:237,0,323 chrXIII 609156 . T C 286.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.601;DP=81;Dels=0.00;FS=132.375;HaplotypeScore=53.2348;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=0;MQRankSum=1.579;QD=3.53;ReadPosRankSum=0.856;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:30,51:81:99:316,0,290 chrXIII 609159 . C T 226.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;DP=81;Dels=0.00;FS=111.237;HaplotypeScore=54.8615;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=-0.748;QD=2.79;ReadPosRankSum=-0.052;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:46,35:81:99:256,0,366 chrXIII 609171 . C T 553.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.212;DP=67;Dels=0.00;FS=76.511;HaplotypeScore=28.0504;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;MQRankSum=1.142;QD=8.25;ReadPosRankSum=-1.582;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:22,45:67:29:586,29,0 chrXIII 609174 . T A 570.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.957;DP=74;Dels=0.00;FS=110.615;HaplotypeScore=28.0504;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=0.923;QD=7.71;ReadPosRankSum=-2.621;SB=-1.173e+02 GT:AD:DP:GQ:PL 1/1:26,48:74:14:603,14,0 chrXIII 609177 . C T 586.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.874;DP=80;Dels=0.00;FS=99.799;HaplotypeScore=12.2845;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=0.098;QD=7.33;ReadPosRankSum=-2.255;SB=-1.482e+02 GT:AD:DP:GQ:PL 1/1:26,54:80:17:619,17,0 chrXIII 609180 . T C 770 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.221;DP=83;Dels=0.00;FS=15.453;HaplotypeScore=8.2498;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=0.287;QD=9.28;ReadPosRankSum=3.306;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:81:803,81,0 chrXIII 609183 . C T 665.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.916;DP=85;Dels=0.00;FS=81.649;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;MQRankSum=1.000;QD=7.82;ReadPosRankSum=-3.631;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:20,65:85:28:698,28,0 chrXIII 609189 . T C 877 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.811;DP=98;Dels=0.00;FS=76.448;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=-0.172;QD=8.95;ReadPosRankSum=-2.340;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:20,78:98:55:910,55,0 chrXIII 609192 . C T 975 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=101;Dels=0.00;FS=76.504;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=1.300;QD=9.65;ReadPosRankSum=-1.479;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:20,81:101:55:1008,55,0 chrXIII 609195 . C T 1042 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.490;DP=103;Dels=0.00;FS=78.249;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;MQRankSum=0.188;QD=10.12;ReadPosRankSum=-0.471;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:20,83:103:59:1075,59,0 chrXIII 609198 . T C 1067 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=110;Dels=0.00;FS=84.592;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;MQRankSum=1.194;QD=9.70;ReadPosRankSum=0.624;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:21,89:110:63:1100,63,0 chrXIII 609207 . G T 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.579;DP=134;Dels=0.00;FS=59.104;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;MQRankSum=1.852;QD=13.06;ReadPosRankSum=1.364;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:17,117:134:99:1783,135,0 chrXIII 609276 . A T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;DP=231;Dels=0.00;FS=31.444;HaplotypeScore=28.3937;MLEAC=1;MLEAF=0.500;MQ=33.41;MQ0=28;MQRankSum=0.127;QD=0.23;ReadPosRankSum=-4.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,37:231:84:84,0,2979 chrXIII 609279 . T C 409.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.099;DP=254;Dels=0.00;FS=41.590;HaplotypeScore=27.0020;MLEAC=1;MLEAF=0.500;MQ=33.91;MQ0=28;MQRankSum=-1.147;QD=1.61;ReadPosRankSum=-5.251;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:194,60:254:99:439,0,3165 chrXIII 609303 . T C 382.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=359;Dels=0.00;FS=51.345;HaplotypeScore=36.7896;MLEAC=1;MLEAF=0.500;MQ=36.76;MQ0=28;MQRankSum=1.614;QD=1.06;ReadPosRankSum=0.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:310,48:359:99:412,0,4880 chrXIII 609315 . C T 996.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;DP=405;Dels=0.00;FS=16.338;HaplotypeScore=46.7892;MLEAC=1;MLEAF=0.500;MQ=37.90;MQ0=29;MQRankSum=2.588;QD=2.46;ReadPosRankSum=-4.416;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:310,94:404:99:1026,0,4812 chrXIII 609317 . G A 1194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.333;DP=413;Dels=0.00;FS=22.304;HaplotypeScore=47.6325;MLEAC=1;MLEAF=0.500;MQ=37.87;MQ0=29;MQRankSum=2.126;QD=2.89;ReadPosRankSum=-3.074;SB=-5.310e+02 GT:AD:DP:GQ:PL 0/1:315,93:412:99:1224,0,4738 chrXIII 609370 . A G 810.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.751;DP=575;Dels=0.00;FS=13.938;HaplotypeScore=158.9794;MLEAC=1;MLEAF=0.500;MQ=42.47;MQ0=0;MQRankSum=-1.077;QD=1.41;ReadPosRankSum=-3.873;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:465,109:575:99:840,0,8842 chrXIII 609384 . C T 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.226;DP=485;Dels=0.00;FS=23.936;HaplotypeScore=125.5745;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=5;MQRankSum=-1.967;QD=0.12;ReadPosRankSum=-6.378;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:416,67:485:90:90,0,7853 chrXIII 609414 . C A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=346;Dels=0.00;FS=1.177;HaplotypeScore=85.3956;MLEAC=1;MLEAF=0.500;MQ=39.45;MQ0=25;MQRankSum=3.396;QD=0.27;ReadPosRankSum=-2.591;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:292,52:346:99:122,0,4640 chrXIII 609420 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.279;DP=307;Dels=0.00;FS=13.770;HaplotypeScore=82.1506;MLEAC=1;MLEAF=0.500;MQ=38.95;MQ0=26;MQRankSum=-2.347;QD=0.05;ReadPosRankSum=-3.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,41:307:45:45,0,4727 chrXIII 609489 . T C 3950.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=261;Dels=0.00;FS=5.727;HaplotypeScore=71.9162;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=18;MQRankSum=-0.577;QD=15.13;ReadPosRankSum=1.675;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:3950,414,0 chrXIII 609533 . G A 2648.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;DP=383;Dels=0.00;FS=7.976;HaplotypeScore=23.8944;MLEAC=1;MLEAF=0.500;MQ=43.91;MQ0=1;MQRankSum=-2.629;QD=6.91;ReadPosRankSum=0.501;SB=-1.066e+03 GT:AD:DP:GQ:PL 0/1:217,162:383:99:2678,0,3874 chrXIII 609557 . A T 4078.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DP=416;Dels=0.00;FS=3.111;HaplotypeScore=22.6822;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=0;MQRankSum=0.264;QD=9.80;ReadPosRankSum=0.759;SB=-2.152e+03 GT:AD:DP:GQ:PL 0/1:207,208:416:99:4078,0,3913 chrXIII 609576 . C T 2955.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=358;Dels=0.00;FS=1.249;HaplotypeScore=25.7294;MLEAC=1;MLEAF=0.500;MQ=42.32;MQ0=0;MQRankSum=-1.918;QD=8.25;ReadPosRankSum=0.523;SB=-1.739e+03 GT:AD:DP:GQ:PL 0/1:190,167:358:99:2985,0,3620 chrXIII 609618 . T C 1434.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=146;Dels=0.00;FS=5.259;HaplotypeScore=30.9096;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=0;MQRankSum=3.053;QD=9.82;ReadPosRankSum=1.888;SB=-5.870e+02 GT:AD:DP:GQ:PL 0/1:59,84:146:99:1464,0,864 chrXIII 609630 . C T 1059.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;DP=101;Dels=0.00;FS=9.493;HaplotypeScore=27.4886;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=5;MQRankSum=3.624;QD=10.49;ReadPosRankSum=1.148;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:43,57:101:99:1089,0,444 chrXIII 609632 . A G 266.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.216;DP=94;Dels=0.00;FS=4.718;HaplotypeScore=26.6999;MLEAC=1;MLEAF=0.500;MQ=38.31;MQ0=7;MQRankSum=-2.408;QD=2.83;ReadPosRankSum=-0.592;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:66,27:94:99:296,0,1044 chrXIII 609636 . T C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=76;Dels=0.03;FS=4.548;HaplotypeScore=29.1617;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=11;MQRankSum=-2.296;QD=0.86;ReadPosRankSum=0.598;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:54,20:74:95:95,0,848 chrXIII 609637 . G A 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DP=75;Dels=0.03;FS=4.537;HaplotypeScore=29.1617;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=13;MQRankSum=-1.690;QD=1.07;ReadPosRankSum=-0.771;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:55,17:73:99:110,0,677 chrXIII 609645 . T G 658 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.341;DP=63;Dels=0.00;FS=7.061;HaplotypeScore=20.2934;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=21;MQRankSum=1.114;QD=10.44;ReadPosRankSum=-3.307;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:28,35:63:48:691,48,0 chrXIII 609648 . T C 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;DP=61;Dels=0.00;FS=33.920;HaplotypeScore=18.2971;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=21;MQRankSum=1.258;QD=3.00;ReadPosRankSum=-0.392;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:41,20:61:99:213,0,353 chrXIII 609651 . C T 266.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;DP=61;Dels=0.00;FS=10.605;HaplotypeScore=20.0819;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=24;MQRankSum=-0.572;QD=4.36;ReadPosRankSum=0.201;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:45,16:61:99:296,0,179 chrXIII 609660 . T C 302.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;DP=55;Dels=0.00;FS=9.915;HaplotypeScore=11.9471;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=25;MQRankSum=1.712;QD=5.49;ReadPosRankSum=-3.025;SB=-4.810e+01 GT:AD:DP:GQ:PL 0/1:33,22:55:13:332,0,13 chrXIII 609699 . T A 436.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;DP=73;Dels=0.00;FS=14.960;HaplotypeScore=3.9780;MLEAC=1;MLEAF=0.500;MQ=22.92;MQ0=25;MQRankSum=0.819;QD=5.97;ReadPosRankSum=1.136;SB=-6.382e-03 GT:AD:DP:GQ:PL 0/1:34,39:73:76:466,0,76 chrXIII 609708 . C T 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;DP=83;Dels=0.00;FS=8.092;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=25;MQRankSum=2.233;QD=6.06;ReadPosRankSum=1.289;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:34,49:83:84:533,0,84 chrXIII 609710 . G A 531.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;DP=84;Dels=0.00;FS=7.709;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=25;MQRankSum=1.040;QD=6.32;ReadPosRankSum=1.808;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:35,49:84:99:561,0,114 chrXIII 609723 . G C 662.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=21;MQRankSum=0.342;QD=7.12;ReadPosRankSum=0.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,60:92:99:692,0,130 chrXIII 609726 . T C 608.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DP=96;Dels=0.00;FS=5.389;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=19;MQRankSum=-0.779;QD=6.33;ReadPosRankSum=0.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,65:96:99:638,0,129 chrXIII 609729 . T C 680.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DP=105;Dels=0.00;FS=34.796;HaplotypeScore=14.3197;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=16;MQRankSum=-1.066;QD=6.48;ReadPosRankSum=1.174;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:32,72:105:99:710,0,129 chrXIII 609747 . C A 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=45.6001;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=0.417;QD=0.55;ReadPosRankSum=2.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,9:112:92:92,0,791 chrXIII 609750 . C T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.122;DP=111;Dels=0.00;FS=9.614;HaplotypeScore=54.5204;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=1.167;QD=0.35;ReadPosRankSum=3.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,9:111:69:69,0,855 chrXIII 609759 . T C 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.120;DP=106;Dels=0.00;FS=9.688;HaplotypeScore=70.2550;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;MQRankSum=-0.979;QD=8.13;ReadPosRankSum=-1.803;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:10,96:106:96:895,96,0 chrXIII 609770 . A T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;DP=115;Dels=0.00;FS=15.656;HaplotypeScore=53.6464;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=0.390;QD=0.43;ReadPosRankSum=-0.651;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,9:115:79:79,0,845 chrXIII 609777 . T A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=122;Dels=0.00;FS=19.655;HaplotypeScore=45.9478;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=0;MQRankSum=0.157;QD=0.39;ReadPosRankSum=-1.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,9:122:77:77,0,919 chrXIII 609786 . C T 240.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=134;Dels=0.00;FS=129.125;HaplotypeScore=36.7765;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=-0.778;QD=1.79;ReadPosRankSum=1.053;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:78,56:134:99:270,0,719 chrXIII 609792 . C T 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.680;DP=136;Dels=0.00;FS=180.687;HaplotypeScore=58.3317;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=0;MQRankSum=-1.343;QD=0.59;ReadPosRankSum=3.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,53:136:99:110,0,824 chrXIII 609793 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;DP=136;Dels=0.00;FS=1.805;HaplotypeScore=57.3485;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=0;MQRankSum=1.865;QD=0.26;ReadPosRankSum=-5.995;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:111,25:136:65:65,0,822 chrXIII 609795 . T C 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;DP=140;Dels=0.00;FS=117.814;HaplotypeScore=63.5557;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=0;MQRankSum=-0.899;QD=1.33;ReadPosRankSum=2.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,59:140:99:216,0,722 chrXIII 609801 . A G,T 871.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=5.133;HaplotypeScore=56.5854;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.54;MQ0=0;MQRankSum=0.388;QD=6.31;ReadPosRankSum=1.318;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/2:1,59,74:138:99:931,669,636,262,0,184 chrXIII 609819 . C T 165.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.242;DP=126;Dels=0.00;FS=90.383;HaplotypeScore=79.6404;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=3.085;QD=1.31;ReadPosRankSum=-2.421;SB=-5.276e+02 GT:AD:DP:GQ:PL 0/1:61,65:126:99:195,0,242 chrXIII 609820 . A G 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DP=129;Dels=0.00;FS=102.015;HaplotypeScore=79.6404;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=2.392;QD=1.27;ReadPosRankSum=-2.416;SB=-4.792e+02 GT:AD:DP:GQ:PL 0/1:62,67:129:99:194,0,248 chrXIII 609834 . T C 720.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=133;Dels=0.00;FS=39.309;HaplotypeScore=6.5801;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=0;MQRankSum=0.544;QD=5.41;ReadPosRankSum=5.594;SB=-1.146e+03 GT:AD:DP:GQ:PL 0/1:15,118:133:99:750,0,122 chrXIII 609846 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=17.5038;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=8.36;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:1179,120,0 chrXIII 612355 . A T 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=4.141;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.469;QD=23.85;ReadPosRankSum=1.696;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2323,234,0 chrXIII 613251 . T A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.51;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4056,391,0 chrXIII 614530 . C A 2867 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.09;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2900,297,0 chrXIII 614778 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.335;QD=24.91;ReadPosRankSum=1.620;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3147,325,0 chrXIII 615554 . T G 4841.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.75;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4841,505,0 chrXIII 616055 . T A 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=2.843;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.744;QD=25.86;ReadPosRankSum=2.406;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4396,451,0 chrXIII 618249 . T G 1235 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=17.64;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1268,132,0 chrXIII 618430 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.1831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2316,237,0 chrXIII 624214 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.298;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.155;QD=24.87;ReadPosRankSum=1.710;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3904,420,0 chrXIII 625729 . A T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=25;Dels=0.04;FS=12.852;HaplotypeScore=6.3451;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=-2.167;QD=1.32;ReadPosRankSum=0.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,6:24:63:63,0,162 chrXIII 626195 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.56;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3684,367,0 chrXIII 626430 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1990;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.693;QD=22.99;ReadPosRankSum=1.614;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2079,213,0 chrXIII 628415 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1153;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.91;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4334,433,0 chrXIII 628699 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1400,144,0 chrXIII 628821 . C T 351 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.07;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:384,39,0 chrXIII 628982 . T A 1940 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.22;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1973,213,0 chrXIII 629793 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.12;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4556,451,0 chrXIII 630246 . T A 1840 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.91;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1873,186,0 chrXIII 630249 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.52;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1948,195,0 chrXIII 632363 . T G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.027;DP=106;Dels=0.00;FS=123.004;HaplotypeScore=21.0071;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=1.388;QD=0.95;ReadPosRankSum=-2.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,40:106:99:131,0,1204 chrXIII 634784 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3651,361,0 chrXIII 635063 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.557;QD=25.84;ReadPosRankSum=1.645;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3108,327,0 chrXIII 635124 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7952;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.64;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3033,312,0 chrXIII 635402 . A G 5435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=220;Dels=0.00;FS=2.556;HaplotypeScore=16.0900;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.807;QD=24.70;ReadPosRankSum=2.949;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:5435,559,0 chrXIII 635511 . A G 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=2.901;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.055;QD=25.10;ReadPosRankSum=2.425;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:5045,529,0 chrXIII 636196 . C G 2630 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.35;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2663,273,0 chrXIII 636208 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=25.89;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2622,258,0 chrXIII 636639 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=8.901;HaplotypeScore=9.4035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.674;QD=21.51;ReadPosRankSum=2.415;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3174,345,0 chrXIII 637100 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4494,445,0 chrXIII 637150 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.16;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4403,445,0 chrXIII 637295 . C T 5275.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5275,523,0 chrXIII 637712 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.8315;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.53;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4955,499,0 chrXIII 637889 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.583;QD=24.20;ReadPosRankSum=1.613;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2840,303,0 chrXIII 638009 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3018,304,0 chrXIII 639027 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2568,255,0 chrXIII 639437 . A G 5438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.605;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.026;QD=25.41;ReadPosRankSum=1.716;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5438,547,0 chrXIII 639623 . T G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=20.4863;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.588;QD=21.03;ReadPosRankSum=1.686;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,225:230:99:4836,534,0 chrXIII 640720 . G C 2156 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2189,228,0 chrXIII 641090 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.41;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3013,312,0 chrXIII 641091 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.802;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.496;QD=22.49;ReadPosRankSum=1.680;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3024,312,0 chrXIII 641245 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=7.9319;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.385;QD=23.38;ReadPosRankSum=1.677;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3002,304,0 chrXIII 641335 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=11.3717;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.41;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3159,316,0 chrXIII 641548 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.0646;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.90;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4030,432,0 chrXIII 641634 . C A 4940.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8744;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.33;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4940,478,0 chrXIII 642868 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.03;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2836,282,0 chrXIII 643985 . C T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4686,469,0 chrXIII 644704 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=184;Dels=0.00;FS=9.776;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.450;QD=23.53;ReadPosRankSum=2.817;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:3,178:184:99:4329,454,0 chrXIII 644973 . T G 7363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=301;Dels=0.00;FS=6.452;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.010;QD=24.46;ReadPosRankSum=2.425;SB=-4.019e+03 GT:AD:DP:GQ:PL 1/1:2,298:301:99:7363,742,0 chrXIII 645420 . A T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=15.8154;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=28.19;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3919,385,0 chrXIII 645478 . T G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3595,367,0 chrXIII 645592 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.10;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4596,472,0 chrXIII 645786 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.70;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4150,421,0 chrXIII 645817 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=174;Dels=0.00;FS=5.956;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.740;QD=23.91;ReadPosRankSum=2.960;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4160,430,0 chrXIII 645859 . G T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.08;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4238,424,0 chrXIII 645900 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.251;QD=22.93;ReadPosRankSum=1.660;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3370,354,0 chrXIII 645914 . C G 3333.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.47;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3333,348,0 chrXIII 646241 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.35;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3287,351,0 chrXIII 646699 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.21;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2010,198,0 chrXIII 647474 . A G 3008 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.26;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3041,318,0 chrXIII 648168 . T A 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=193;Dels=0.00;FS=9.445;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.068;QD=24.93;ReadPosRankSum=2.932;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4812,478,0 chrXIII 649250 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:2011,195,0 chrXIII 649473 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.45;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2378,246,0 chrXIII 649487 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.4241;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.03;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2652,256,0 chrXIII 649552 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.504;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.587;QD=21.94;ReadPosRankSum=1.675;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2710,288,0 chrXIII 649796 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2411,237,0 chrXIII 649905 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.299;QD=23.72;ReadPosRankSum=1.699;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2500,258,0 chrXIII 650714 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.1734;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=26.12;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3317,348,0 chrXIII 650971 . A C 2719 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2504;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.24;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2752,291,0 chrXIII 650986 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.71;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2833,283,0 chrXIII 651148 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3925;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.181;QD=24.42;ReadPosRankSum=1.666;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2597,267,0 chrXIII 651277 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.478;QD=24.32;ReadPosRankSum=1.700;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2732,282,0 chrXIII 651340 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.52;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3330,343,0 chrXIII 651388 . C A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.52;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3853,376,0 chrXIII 651497 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=119.8470;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.99;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3448,349,0 chrXIII 651579 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=3.338;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.635;QD=22.28;ReadPosRankSum=1.674;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3989,409,0 chrXIII 651613 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.16;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4227,424,0 chrXIII 652003 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.16;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1353,147,0 chrXIII 652277 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.622;QD=23.34;ReadPosRankSum=1.643;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,77:82:99:1947,201,0 chrXIII 652690 . A C 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.193;QD=26.01;ReadPosRankSum=1.711;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4344,445,0 chrXIII 653186 . A G 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.0427;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.887;QD=23.22;ReadPosRankSum=1.666;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4922,511,0 chrXIII 654902 . T C 304 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.48;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:36:337,36,0 chrXIII 655922 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.54;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3672,385,0 chrXIII 655948 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.86;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3282,337,0 chrXIII 656131 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.28;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2930,292,0 chrXIII 656137 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.06;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2768,294,0 chrXIII 657020 . T C 4080.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=26.15;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4080,415,0 chrXIII 657059 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=164;Dels=0.00;FS=10.306;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.068;QD=22.49;ReadPosRankSum=2.895;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3688,385,0 chrXIII 657064 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.59;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3798,385,0 chrXIII 657211 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=6.522;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.817;QD=24.92;ReadPosRankSum=2.385;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3812,388,0 chrXIII 657240 . G C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.28;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3468,366,0 chrXIII 657241 . C A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.89;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3546,367,0 chrXIII 657406 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.6243;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.83;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3186,316,0 chrXIII 658438 . T G 2590 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2623,267,0 chrXIII 659142 . G C 6007.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=22.6529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.92;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:6007,651,0 chrXIII 659245 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.53;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4877,499,0 chrXIII 659323 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.131;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.691;QD=23.39;ReadPosRankSum=1.713;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4280,454,0 chrXIII 659437 . C T 4747.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.9158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4747,466,0 chrXIII 659982 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:4097,424,0 chrXIII 660071 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=166;Dels=0.00;FS=9.129;HaplotypeScore=12.4898;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.205;QD=24.19;ReadPosRankSum=3.375;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:4016,418,0 chrXIII 660769 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=206;Dels=0.00;FS=6.300;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.152;QD=25.63;ReadPosRankSum=2.414;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:5279,541,0 chrXIII 661308 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.56;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4319,430,0 chrXIII 661676 . T C 6247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=254;Dels=0.00;FS=3.802;HaplotypeScore=12.2303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.251;QD=24.59;ReadPosRankSum=1.705;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:6247,667,0 chrXIII 661764 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5092,517,0 chrXIII 662637 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.97;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4415,454,0 chrXIII 662664 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3948,403,0 chrXIII 663000 . C T 5084.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.48;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5084,532,0 chrXIII 664080 . T C 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=3.488;HaplotypeScore=11.9142;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.089;QD=23.51;ReadPosRankSum=1.701;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,220:225:99:5290,556,0 chrXIII 664122 . A C 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.310;QD=23.47;ReadPosRankSum=1.715;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4906,520,0 chrXIII 664518 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=3.358;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.459;QD=25.00;ReadPosRankSum=1.703;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:3008,309,0 chrXIII 664741 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.68;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2641,282,0 chrXIII 664811 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=154;Dels=0.00;FS=11.476;HaplotypeScore=5.4185;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.230;QD=19.42;ReadPosRankSum=2.783;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3024,333,0 chrXIII 664814 . G A 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=4.094;HaplotypeScore=5.8228;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.202;QD=19.18;ReadPosRankSum=1.665;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2987,327,0 chrXIII 665727 . C A 1479 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.43;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1512,150,0 chrXIII 665729 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.70;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1432,150,0 chrXIII 665980 . T C 2807 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.29;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2840,286,0 chrXIII 666112 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3883,391,0 chrXIII 667187 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5568;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.18;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3385,334,0 chrXIII 667334 . A G 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.442;QD=24.96;ReadPosRankSum=2.425;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:5066,529,0 chrXIII 667427 . A T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.12;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4438,442,0 chrXIII 667524 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1294;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.45;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5305,535,0 chrXIII 667766 . G A 8127.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=17.1699;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.13;SB=-3.498e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:8127,800,0 chrXIII 671242 . T G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3252,336,0 chrXIII 672129 . T C 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=227;Dels=0.00;FS=8.487;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.540;QD=20.94;ReadPosRankSum=1.926;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4753,510,0 chrXIII 673803 . A G 6406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=273;Dels=0.00;FS=6.069;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.893;QD=23.47;ReadPosRankSum=2.879;SB=-3.647e+03 GT:AD:DP:GQ:PL 1/1:3,270:273:99:6406,664,0 chrXIII 673846 . A G 6389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=274;Dels=0.00;FS=7.951;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.088;QD=23.32;ReadPosRankSum=2.414;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:2,272:274:99:6389,682,0 chrXIII 673975 . G A 7656.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=14.7205;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.30;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:7656,802,0 chrXIII 674192 . A G 7514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=326;Dels=0.00;FS=5.557;HaplotypeScore=31.6413;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.525;QD=23.05;ReadPosRankSum=2.935;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:3,322:326:99:7514,799,0 chrXIII 674833 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=6.3190;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.68;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1440,144,0 chrXIII 675083 . A C 2804 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=8.5434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.49;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2837,306,0 chrXIII 680018 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=0.766;QD=24.83;ReadPosRankSum=1.699;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2615,261,0 chrXIII 680380 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=7.332;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.769;QD=26.55;ReadPosRankSum=2.402;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2794,282,0 chrXIII 680399 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.350;QD=22.74;ReadPosRankSum=1.585;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2739,282,0 chrXIII 680762 . C A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6731;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.93;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3422,340,0 chrXIII 680769 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.098;QD=24.49;ReadPosRankSum=1.708;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3478,352,0 chrXIII 680903 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4453;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=25.65;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3617,364,0 chrXIII 680936 . T C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0884;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.358;QD=19.80;ReadPosRankSum=3.762;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:8,124:134:99:2686,282,0 chrXIII 680940 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=10.6348;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.65;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2646,276,0 chrXIII 681615 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=3.059;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.323;QD=22.68;ReadPosRankSum=1.635;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,177:182:99:4128,427,0 chrXIII 681836 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6595;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.419;QD=24.75;ReadPosRankSum=1.687;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3812,397,0 chrXIII 682932 . C T 6668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=273;Dels=0.00;FS=3.173;HaplotypeScore=19.8203;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.280;QD=24.42;ReadPosRankSum=-0.318;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:1,271:273:99:6668,656,0 chrXIII 682985 . C G 6298.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=20.9335;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.04;SB=-3.543e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6298,655,0 chrXIII 683334 . G A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.4257;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.16;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5141,532,0 chrXIII 683373 . T C 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=234;Dels=0.00;FS=9.807;HaplotypeScore=14.4317;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.110;QD=21.19;ReadPosRankSum=2.334;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4958,526,0 chrXIII 683802 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4256,433,0 chrXIII 683958 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4435,436,0 chrXIII 684197 . T A 5568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=219;Dels=0.00;FS=3.023;HaplotypeScore=14.7086;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.140;QD=25.42;ReadPosRankSum=2.371;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5568,559,0 chrXIII 684262 . C T 5094.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.69;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5094,526,0 chrXIII 684406 . A T 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=218;Dels=0.00;FS=5.785;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.329;QD=19.27;ReadPosRankSum=1.458;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4200,439,0 chrXIII 684407 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.79;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4274,468,0 chrXIII 685138 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4552,457,0 chrXIII 685330 . T A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.29;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4350,439,0 chrXIII 685585 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.62;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2657,265,0 chrXIII 685689 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.62;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2277,234,0 chrXIII 686772 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.68;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2550,250,0 chrXIII 687028 . G T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3598,361,0 chrXIII 687199 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.35;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2785,280,0 chrXIII 687551 . T C 3106 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3139,330,0 chrXIII 689878 . T A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3396,334,0 chrXIII 690710 . A T 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=120;Dels=0.00;FS=6.039;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.286;QD=24.32;ReadPosRankSum=2.942;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2951,297,0 chrXIII 691064 . A T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3321,334,0 chrXIII 692065 . C G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4291,439,0 chrXIII 693754 . C T 4879.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4513;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.11;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4879,490,0 chrXIII 695197 . A G 5501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=228;Dels=0.00;FS=5.650;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.643;QD=24.13;ReadPosRankSum=2.899;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:5501,559,0 chrXIII 695300 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4282,436,0 chrXIII 697086 . C T 5276.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.12;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5276,517,0 chrXIII 697107 . T C 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.126;QD=24.52;ReadPosRankSum=1.715;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4904,517,0 chrXIII 697269 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.0748;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.61;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4683,466,0 chrXIII 697520 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=160;Dels=0.00;FS=2.886;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.023;QD=23.65;ReadPosRankSum=2.357;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3784,394,0 chrXIII 697993 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.23;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4337,448,0 chrXIII 698336 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.64;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2242,234,0 chrXIII 698372 . C A 2464 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=95.0001;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.43;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2497,252,0 chrXIII 698549 . G T 1455 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=25.09;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1488,150,0 chrXIII 698569 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=24.25;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1488,156,0 chrXIII 698595 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.64;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1428,144,0 chrXIII 698611 . A G 1067 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.52;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1100,114,0 chrXIII 698642 . T A 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.600;QD=18.15;ReadPosRankSum=1.666;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:977,102,0 chrXIII 698828 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.90;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2777,277,0 chrXIII 698988 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.38;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2769,277,0 chrXIII 698994 . A G 2627 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.71;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2660,273,0 chrXIII 699056 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.62;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2152,216,0 chrXIII 699129 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.71;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2424,255,0 chrXIII 699315 . C A 2787 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.23;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2820,291,0 chrXIII 699378 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.452;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.391;QD=25.12;ReadPosRankSum=1.704;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3148,322,0 chrXIII 699619 . T G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=158;Dels=0.00;FS=2.992;HaplotypeScore=8.6903;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.536;QD=23.47;ReadPosRankSum=1.441;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3708,368,0 chrXIII 699801 . A G 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=183;Dels=0.00;FS=6.485;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.020;QD=25.90;ReadPosRankSum=2.342;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4739,490,0 chrXIII 699964 . C T 5212.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=26.32;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5212,517,0 chrXIII 699987 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=212;Dels=0.00;FS=2.875;HaplotypeScore=12.8584;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-1.163;QD=24.03;ReadPosRankSum=2.414;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:5095,532,0 chrXIII 700035 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=218;Dels=0.00;FS=7.770;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.114;QD=21.63;ReadPosRankSum=2.427;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4715,502,0 chrXIII 700050 . G A 5093.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.9526;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.74;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:5093,505,0 chrXIII 700356 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.8248;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.46;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3796,397,0 chrXIII 700452 . T A 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4138;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.350;QD=21.83;ReadPosRankSum=1.656;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3994,397,0 chrXIII 700469 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.11;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3891,388,0 chrXIII 700735 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=3.401;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.814;QD=22.12;ReadPosRankSum=1.686;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3384,351,0 chrXIII 700956 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.994;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=2.420;QD=22.60;ReadPosRankSum=0.419;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3797,367,0 chrXIII 701095 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.86;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4009,406,0 chrXIII 701167 . A C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.640;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.341;QD=22.21;ReadPosRankSum=2.408;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2676,273,0 chrXIII 701244 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=10.229;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.775;QD=22.46;ReadPosRankSum=2.408;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2706,276,0 chrXIII 701442 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.80;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1968,204,0 chrXIII 701468 . A T 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.141;QD=23.83;ReadPosRankSum=1.690;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:2011,216,0 chrXIII 701606 . T A 2207 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2240,222,0 chrXIII 703483 . A G 958 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.55;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:991,99,0 chrXIII 703487 . T C 911 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=1.450;QD=18.22;ReadPosRankSum=1.591;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:1,48:50:96:944,96,0 chrXIII 703489 . A G 923 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.84;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:96:956,96,0 chrXIII 703549 . T C 432 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.47;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:48:465,48,0 chrXIII 703558 . A G 342 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=39.6268;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.12;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:42:375,42,0 chrXIII 703588 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=10.08;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:66:658,66,0 chrXIII 703828 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=25.93;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:4045,418,0 chrXIII 703858 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.848;HaplotypeScore=6.6689;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.712;QD=19.72;ReadPosRankSum=1.590;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3391,369,0 chrXIII 703860 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=176;Dels=0.00;FS=14.466;HaplotypeScore=8.2463;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.202;QD=18.98;ReadPosRankSum=2.902;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:3,171:176:99:3340,366,0 chrXIII 703913 . T G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=162;Dels=0.00;FS=3.009;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.889;QD=20.87;ReadPosRankSum=2.388;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,157:162:99:3381,349,0 chrXIII 703969 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3285;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.15;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3450,363,0 chrXIII 703990 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.92;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3493,349,0 chrXIII 704140 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.56;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2379,243,0 chrXIII 704425 . A T 2760 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.19;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2793,279,0 chrXIII 704551 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.76;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1720,171,0 chrXIII 704563 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.34;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2064,216,0 chrXIII 704692 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.05;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1738,180,0 chrXIII 704704 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.41;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1566,159,0 chrXIII 704707 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=19.50;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1554,159,0 chrXIII 704739 . T G 2153 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.40;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2186,237,0 chrXIII 704858 . T G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.866;QD=25.23;ReadPosRankSum=1.668;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2758,291,0 chrXIII 705104 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.46;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3440,343,0 chrXIII 706623 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3913,391,0 chrXIII 708242 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3943,397,0 chrXIII 711470 . A T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4030,406,0 chrXIII 711575 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3559,358,0 chrXIII 712539 . G C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4103,424,0 chrXIII 712889 . G T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3452,340,0 chrXIII 714847 . G A 6690.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=26.65;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6690,667,0 chrXIII 715098 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.584;QD=26.26;ReadPosRankSum=1.713;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4726,478,0 chrXIII 715145 . A G 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=3.012;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.201;QD=25.91;ReadPosRankSum=2.408;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4638,463,0 chrXIII 715457 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.38;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3851,376,0 chrXIII 715643 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.22;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4111,427,0 chrXIII 716541 . G T 1396 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.66;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1429,144,0 chrXIII 716978 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.5680;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.04;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5130,505,0 chrXIII 717074 . C T 5190.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.69;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5190,520,0 chrXIII 717629 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.632;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.201;QD=25.11;ReadPosRankSum=1.709;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3767,379,0 chrXIII 718072 . A C 2190 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2223,231,0 chrXIII 718189 . A C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.544;QD=21.69;ReadPosRankSum=1.699;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2310,240,0 chrXIII 718198 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.736;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.899;QD=19.58;ReadPosRankSum=1.699;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2069,222,0 chrXIII 718210 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.51;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1945,210,0 chrXIII 718241 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.91;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1754,174,0 chrXIII 718396 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=0.025;QD=18.44;ReadPosRankSum=1.682;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1324,141,0 chrXIII 718423 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.42;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,141,0 chrXIII 718456 . A C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.048;QD=22.78;ReadPosRankSum=1.299;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1696,174,0 chrXIII 718505 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.11;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1470,156,0 chrXIII 718511 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.59;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1458,153,0 chrXIII 718535 . T A 1140 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.00;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1173,117,0 chrXIII 718679 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.29;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3945,394,0 chrXIII 718763 . T C 5000.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.25;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5000,514,0 chrXIII 718938 . T A 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=24.13;ReadPosRankSum=1.698;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4922,517,0 chrXIII 718973 . G A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4432,436,0 chrXIII 719516 . G A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.69;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4371,433,0 chrXIII 719517 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.80;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4365,433,0 chrXIII 721333 . A G 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=231;Dels=0.00;FS=5.237;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.472;QD=24.32;ReadPosRankSum=3.423;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:4,227:231:99:5619,586,0 chrXIII 723720 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.72;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3863,394,0 chrXIII 723721 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.507;QD=23.19;ReadPosRankSum=-0.133;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3943,370,0 chrXIII 724434 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3374,348,0 chrXIII 726276 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.680;QD=22.82;ReadPosRankSum=1.706;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3137,319,0 chrXIII 727057 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.821;QD=20.07;ReadPosRankSum=2.415;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4316,454,0 chrXIII 727303 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.92;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3680,364,0 chrXIII 727470 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3714,376,0 chrXIII 727646 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3466,343,0 chrXIII 727861 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6771;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.49;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3569,349,0 chrXIII 729284 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2817,288,0 chrXIII 729328 . T A 2755 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.28;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2788,274,0 chrXIII 729976 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=10.5505;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.486;QD=25.42;ReadPosRankSum=2.292;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:3236,333,0 chrXIII 730384 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2851,300,0 chrXIII 730533 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=163;Dels=0.00;FS=10.128;HaplotypeScore=14.3363;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.186;QD=22.66;ReadPosRankSum=2.895;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3694,387,0 chrXIII 731422 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.75;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3168,330,0 chrXIII 731433 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.17;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2999,309,0 chrXIII 732485 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.71;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3685,364,0 chrXIII 733869 . C T 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.617;QD=25.55;ReadPosRankSum=1.294;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2256,225,0 chrXIII 733977 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.84;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3180,313,0 chrXIII 734142 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7963;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.64;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2571,258,0 chrXIII 734392 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=26.10;ReadPosRankSum=1.700;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2904,309,0 chrXIII 738970 . T C 2153 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.94;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2186,225,0 chrXIII 740218 . G T 2405 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2438,237,0 chrXIII 740819 . A C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.387;QD=25.94;ReadPosRankSum=2.371;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:3294,337,0 chrXIII 743500 . C A 5176.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5176,532,0 chrXIII 744435 . T A 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=177;Dels=0.00;FS=4.998;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.458;QD=21.80;ReadPosRankSum=1.654;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3859,411,0 chrXIII 745110 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3856,379,0 chrXIII 747051 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9791;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.08;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3912,409,0 chrXIII 747135 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6927;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.45;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4938,508,0 chrXIII 749557 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=124;Dels=0.00;FS=6.579;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.518;QD=23.48;ReadPosRankSum=2.409;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,119:124:99:2945,301,0 chrXIII 752227 . T G 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=24.12;ReadPosRankSum=1.717;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5669,601,0 chrXIII 752521 . T G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.137;QD=25.78;ReadPosRankSum=1.680;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3480,352,0 chrXIII 754594 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.57;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2613,267,0 chrXIII 754796 . A T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=27.60;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3422,343,0 chrXIII 754826 . T A 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=134;Dels=0.00;FS=2.592;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.477;QD=26.38;ReadPosRankSum=2.395;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3535,352,0 chrXIII 755756 . G A 5195.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.47;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5195,523,0 chrXIII 755780 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.56;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4500,466,0 chrXIII 755942 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3297;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.40;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3607,375,0 chrXIII 757003 . A T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.462;QD=0.58;ReadPosRankSum=-3.129;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,10:38:52:52,0,447 chrXIII 757200 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4906;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.500;QD=25.35;ReadPosRankSum=1.629;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3422,352,0 chrXIII 757281 . T C 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=228;Dels=0.00;FS=2.562;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.792;QD=25.25;ReadPosRankSum=2.889;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:5758,595,0 chrXIII 757815 . G C 9245.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=29.0130;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.20;SB=-4.829e+03 GT:AD:DP:GQ:PL 1/1:0,377:382:99:9245,935,0 chrXIII 757882 . T C 8857.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=387;Dels=0.00;FS=12.093;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.531;QD=22.89;ReadPosRankSum=2.950;SB=-4.227e+03 GT:AD:DP:GQ:PL 1/1:3,380:386:99:8857,940,0 chrXIII 757906 . C T 8681.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=12.2899;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.59;SB=-4.058e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:8681,863,0 chrXIII 757948 . T C 7530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=324;Dels=0.00;FS=12.712;HaplotypeScore=28.5978;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.389;QD=23.24;ReadPosRankSum=2.885;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:3,319:324:99:7530,766,0 chrXIII 758017 . A T 7371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=320;Dels=0.00;FS=2.986;HaplotypeScore=26.2568;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.242;QD=23.03;ReadPosRankSum=2.427;SB=-3.993e+03 GT:AD:DP:GQ:PL 1/1:2,318:320:99:7371,733,0 chrXIII 758053 . A G 8374.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=23.72;SB=-4.611e+03 GT:AD:DP:GQ:PL 1/1:0,353:353:99:8374,856,0 chrXIII 758185 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=20.61;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4163,433,0 chrXIII 758197 . T G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=18.95;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:3904,403,0 chrXIII 758200 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=5.378;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-1.397;QD=18.14;ReadPosRankSum=1.715;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3756,408,0 chrXIII 758254 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=19.58;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4171,415,0 chrXIII 758256 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=209;Dels=0.00;FS=7.383;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;MQRankSum=1.232;QD=19.45;ReadPosRankSum=1.615;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4066,412,0 chrXIII 758281 . C G 3928.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=20.46;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3928,414,0 chrXIII 758293 . A C 3373.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-1.626;QD=20.57;ReadPosRankSum=1.690;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3373,369,0 chrXIII 758299 . C T 3230.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;MQRankSum=-1.732;QD=20.97;ReadPosRankSum=1.710;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3264,309,0 chrXIII 758302 . C T 2844 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.251;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=-1.684;QD=19.61;ReadPosRankSum=1.469;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2877,284,0 chrXIII 758308 . C G 2806 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=21.26;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2839,297,0 chrXIII 758318 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=20.27;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2465,252,0 chrXIII 758437 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=26.23;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2735,268,0 chrXIII 758475 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.54;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2293,240,0 chrXIII 758494 . T C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.342;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.953;QD=22.70;ReadPosRankSum=-0.606;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1894,178,0 chrXIII 758527 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=16.84;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1768,177,0 chrXIII 758529 . T C 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-1.303;QD=16.38;ReadPosRankSum=1.633;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1769,183,0 chrXIII 758570 . G C 2321 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.28;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2354,243,0 chrXIII 758927 . A G 6112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.804;DP=280;Dels=0.02;FS=25.537;HaplotypeScore=98.9389;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.533;QD=21.83;ReadPosRankSum=3.787;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:5,267:275:99:6112,643,0 chrXIII 759082 . A G 241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.623;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=471.9611;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=2.001;QD=0.92;ReadPosRankSum=-6.820;SB=-2.300e+01 GT:AD:DP:GQ:PL 1/1:228,24:261:30:274,30,0 chrXIII 759145 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.01;FS=0.000;HaplotypeScore=44.6922;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.76;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4485,460,0 chrXIII 759220 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.1007;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.21;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3130,316,0 chrXIII 759350 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.95;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3621,387,0 chrXIII 759582 . G A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.20;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4404,436,0 chrXIII 759615 . A T 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.102;QD=23.16;ReadPosRankSum=1.693;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4076,403,0 chrXIII 759891 . C A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3805,385,0 chrXIII 759962 . G A 6561.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.2803;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.67;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6561,649,0 chrXIII 760211 . T A 8162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=314;Dels=0.00;FS=6.317;HaplotypeScore=17.8962;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.488;QD=25.99;ReadPosRankSum=2.410;SB=-4.311e+03 GT:AD:DP:GQ:PL 1/1:2,312:314:99:8162,812,0 chrXIII 760322 . A G 7089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=308;Dels=0.00;FS=8.436;HaplotypeScore=24.5679;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.122;QD=23.02;ReadPosRankSum=3.365;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:4,303:308:99:7089,739,0 chrXIII 760637 . A G 7251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=308;Dels=0.00;FS=3.024;HaplotypeScore=23.5397;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.036;QD=23.54;ReadPosRankSum=2.425;SB=-3.884e+03 GT:AD:DP:GQ:PL 1/1:2,302:308:99:7251,781,0 chrXIII 760816 . A C 6899.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.55;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6899,703,0 chrXIII 760892 . G A 5002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=228;Dels=0.00;FS=4.085;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.896;QD=21.94;ReadPosRankSum=1.671;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5002,503,0 chrXIII 760898 . C T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.6949;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.75;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4982,508,0 chrXIII 761015 . T C 4965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=21.9942;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.520;QD=22.99;ReadPosRankSum=0.702;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4965,507,0 chrXIII 761300 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=162;Dels=0.00;FS=6.667;HaplotypeScore=13.1055;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.817;QD=19.56;ReadPosRankSum=2.419;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3202,325,0 chrXIII 761318 . T A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=11.4383;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.210;QD=18.28;ReadPosRankSum=1.710;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2903,300,0 chrXIII 761436 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0692;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=25.71;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4217,418,0 chrXIII 761468 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.95;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3688,387,0 chrXIII 761480 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.674;QD=19.94;ReadPosRankSum=1.694;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3609,378,0 chrXIII 761798 . T C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=3.782;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.121;QD=22.03;ReadPosRankSum=1.705;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2919,312,0 chrXIII 761801 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.15;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3221,319,0 chrXIII 761973 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.32;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2590,252,0 chrXIII 762006 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.07;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2615,261,0 chrXIII 762151 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.313;QD=26.92;ReadPosRankSum=1.704;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3338,346,0 chrXIII 762262 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.5723;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.181;QD=23.83;ReadPosRankSum=1.714;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4670,481,0 chrXIII 762346 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.55;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3438,337,0 chrXIII 762356 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.614;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.045;QD=21.52;ReadPosRankSum=1.706;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2852,303,0 chrXIII 762442 . C A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.71;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3459,358,0 chrXIII 762467 . G C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.63;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3485,349,0 chrXIII 762774 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=24.13;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3499,349,0 chrXIII 762779 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=22.59;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3366,337,0 chrXIII 762794 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=20.38;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3363,337,0 chrXIII 762822 . C T 2560 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=16.84;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2593,255,0 chrXIII 762840 . A C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;MQRankSum=-0.719;QD=16.05;ReadPosRankSum=1.709;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2393,243,0 chrXIII 762915 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.508;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.371;QD=20.51;ReadPosRankSum=1.588;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3028,330,0 chrXIII 763157 . A T 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.666;QD=23.24;ReadPosRankSum=1.643;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1846,189,0 chrXIII 763184 . T G 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=63.8667;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.855;QD=21.70;ReadPosRankSum=1.688;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1769,186,0 chrXIII 763289 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=0.604;QD=24.40;ReadPosRankSum=1.692;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2156,222,0 chrXIII 763672 . A C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DP=107;Dels=0.00;FS=2.603;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.651;QD=22.22;ReadPosRankSum=0.391;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,102:107:99:2411,229,0 chrXIII 763864 . G C 2489 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.40;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2522,267,0 chrXIII 763944 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.65;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2325,234,0 chrXIII 764392 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.57;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1876,183,0 chrXIII 764401 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.129;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.281;QD=21.76;ReadPosRankSum=1.685;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1665,177,0 chrXIII 764512 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.51;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2754,273,0 chrXIII 764629 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=26.08;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2954,309,0 chrXIII 764668 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.05;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2503,270,0 chrXIII 764669 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.41;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2678,267,0 chrXIII 764686 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.95;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2952,300,0 chrXIII 764881 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=25.81;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4311,448,0 chrXIII 765034 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.55;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4121,421,0 chrXIII 765055 . T G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=7.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.321;QD=21.64;ReadPosRankSum=2.422;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3896,409,0 chrXIII 765059 . T G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.498;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=0.435;QD=21.91;ReadPosRankSum=1.713;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3921,406,0 chrXIII 765109 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.98;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3150,310,0 chrXIII 765121 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=142;Dels=0.00;FS=11.133;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-1.007;QD=19.04;ReadPosRankSum=2.951;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2736,285,0 chrXIII 765291 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=23.86;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2658,267,0 chrXIII 765334 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.646;QD=25.36;ReadPosRankSum=1.588;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3076,321,0 chrXIII 765393 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.6500;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.94;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3933,391,0 chrXIII 765542 . T C 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=3.024;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.758;QD=25.71;ReadPosRankSum=2.405;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4294,442,0 chrXIII 765648 . G T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=26.86;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4136,412,0 chrXIII 765682 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.837;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.506;QD=26.53;ReadPosRankSum=2.417;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:4006,412,0 chrXIII 765773 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.72;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3584,358,0 chrXIII 765790 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.93;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3216,322,0 chrXIII 765853 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.46;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2304,243,0 chrXIII 765865 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.32;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2645,259,0 chrXIII 765900 . G T 3069 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.98;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3102,310,0 chrXIII 766029 . A G 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=2.611;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-1.140;QD=24.49;ReadPosRankSum=2.912;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1992,201,0 chrXIII 766042 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=24.67;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2179,219,0 chrXIII 766186 . T A 1799 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=20.68;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1832,186,0 chrXIII 766215 . T C 1760 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=17.96;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1793,189,0 chrXIII 766216 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=19.15;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1891,192,0 chrXIII 766244 . A T 1703 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=18.12;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1736,177,0 chrXIII 766245 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-1.696;QD=17.44;ReadPosRankSum=1.696;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1690,177,0 chrXIII 766258 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=17.87;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1641,162,0 chrXIII 766444 . T G 2562 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.47;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2595,273,0 chrXIII 766566 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.3283;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.12;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2759,294,0 chrXIII 766609 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=14.6932;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.64;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2433,258,0 chrXIII 766746 . A T 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.366;QD=23.73;ReadPosRankSum=-1.599;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2501,261,0 chrXIII 766771 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=109;Dels=0.00;FS=5.826;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.046;QD=22.84;ReadPosRankSum=2.880;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2523,267,0 chrXIII 766803 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=25.25;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3384,343,0 chrXIII 766878 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=27.25;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3433,337,0 chrXIII 766972 . A T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.78;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3454,346,0 chrXIII 767001 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.32;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3060,307,0 chrXIII 767075 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.549;QD=22.48;ReadPosRankSum=1.704;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2821,288,0 chrXIII 767080 . C T 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.572;QD=22.70;ReadPosRankSum=1.679;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2984,309,0 chrXIII 768019 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.293;QD=24.58;ReadPosRankSum=1.705;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3253,339,0 chrXIII 769127 . G C 3035 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.53;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3068,324,0 chrXIII 769653 . A T 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.528;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.482;QD=26.18;ReadPosRankSum=1.691;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4450,439,0 chrXIII 770320 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.02;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3338,345,0 chrXIII 770362 . A C 2989 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1735;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.30;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3022,307,0 chrXIII 771631 . T C 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=20.5418;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.077;QD=23.97;ReadPosRankSum=1.715;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4842,514,0 chrXIII 772345 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.45;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5089,502,0 chrXIII 772660 . T G 666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.854;DP=89;Dels=0.00;FS=5.113;HaplotypeScore=31.5710;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.082;QD=7.48;ReadPosRankSum=0.193;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:19,67:89:81:699,81,0 chrXIII 772662 . G C 691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=84;Dels=0.04;FS=0.000;HaplotypeScore=30.6842;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-0.478;QD=8.23;ReadPosRankSum=0.309;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:11,66:81:84:724,84,0 chrXIII 772718 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.662;QD=21.30;ReadPosRankSum=1.681;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1503,153,0 chrXIII 773437 . G A 6147.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.51;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:6147,616,0 chrXIII 775628 . A T 6758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=4.104;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.540;QD=27.36;ReadPosRankSum=1.718;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:6758,676,0 chrXIII 776467 . A T 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.8370;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.569;QD=23.79;ReadPosRankSum=1.712;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4044,394,0 chrXIII 777456 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.201;HaplotypeScore=7.9304;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.080;QD=23.97;ReadPosRankSum=1.713;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4459,460,0 chrXIII 778647 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.041;QD=25.13;ReadPosRankSum=2.396;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2320,237,0 chrXIII 780034 . T A 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=3.219;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=26.53;ReadPosRankSum=1.709;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3953,403,0 chrXIII 781016 . C G 3617.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3617,372,0 chrXIII 781362 . T G 3657.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.75;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3657,373,0 chrXIII 782449 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2583,255,0 chrXIII 783031 . G A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.1744;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.90;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4817,475,0 chrXIII 783097 . C T 4941.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8228;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.01;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4941,484,0 chrXIII 784558 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2421,243,0 chrXIII 785591 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.65;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3544,355,0 chrXIII 788656 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.61;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3008,318,0 chrXIII 788971 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.76;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2150,219,0 chrXIII 789071 . G T 949 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.60;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:982,102,0 chrXIII 789101 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:505,51,0 chrXIII 789347 . G A 1345 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1378,135,0 chrXIII 789456 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.22;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1801,183,0 chrXIII 789474 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.94;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1613,165,0 chrXIII 790664 . A T 6264.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.4227;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.36;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6264,625,0 chrXIII 797770 . G A 5819.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.09;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5819,583,0 chrXIII 798603 . G C 3058 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.14;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3091,315,0 chrXIII 801997 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2615;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.24;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4540,448,0 chrXIII 809198 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=145;Dels=0.00;FS=10.384;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.458;QD=24.32;ReadPosRankSum=2.923;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3526,361,0 chrXIII 809235 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=8.901;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.811;QD=25.52;ReadPosRankSum=2.415;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3675,382,0 chrXIII 812699 . G T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.53;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4748,472,0 chrXIII 814591 . G T 5091.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.38;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5091,508,0 chrXIII 817301 . C A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3527,355,0 chrXIII 819018 . C T 7257.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.2325;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.11;SB=-3.560e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:7257,721,0 chrXIII 819141 . A C 6135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=298;Dels=0.00;FS=6.153;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.399;QD=20.59;ReadPosRankSum=2.384;SB=-3.742e+03 GT:AD:DP:GQ:PL 1/1:2,296:298:99:6135,637,0 chrXIII 819989 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.90;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3297,325,0 chrXIII 820241 . C T 5301.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.6983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5301,535,0 chrXIII 821488 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3589,370,0 chrXIII 822465 . G T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.9981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.90;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3752,364,0 chrXIII 824795 . C A 2630 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.87;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2663,282,0 chrXIII 824813 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.29;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2779,300,0 chrXIII 825013 . A C 4617.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.09;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,204:209:99:4617,481,0 chrXIII 825605 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.82;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3491,369,0 chrXIII 826533 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=3.042;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.273;QD=23.40;ReadPosRankSum=2.379;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3300,340,0 chrXIII 826657 . C A 3144 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.9801;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.77;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3177,313,0 chrXIII 826818 . T G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.464;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.577;QD=25.25;ReadPosRankSum=1.701;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2836,294,0 chrXIII 826968 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3473,358,0 chrXIII 827669 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.76;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4508,448,0 chrXIII 828055 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4469,463,0 chrXIII 829049 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4491;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.82;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4108,409,0 chrXIII 830235 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=2.906;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.771;QD=24.15;ReadPosRankSum=2.381;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1796,186,0 chrXIII 830265 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.93;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1730,180,0 chrXIII 830275 . C A 1819 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.93;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1852,180,0 chrXIII 830543 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=26.26;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4517,460,0 chrXIII 830562 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=187;Dels=0.00;FS=7.406;HaplotypeScore=5.7893;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.650;QD=24.40;ReadPosRankSum=2.147;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4562,457,0 chrXIII 830589 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.36;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4775,475,0 chrXIII 830715 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4821;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.07;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3995,418,0 chrXIII 831458 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1844,189,0 chrXIII 831576 . T C 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=81;Dels=0.00;FS=6.168;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.738;QD=16.00;ReadPosRankSum=2.813;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1329,132,0 chrXIII 832164 . A T 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=2.867;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.582;QD=22.68;ReadPosRankSum=2.417;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3402,349,0 chrXIII 833534 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.62;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3721,361,0 chrXIII 835134 . G C 2669 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.85;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,123:128:99:2702,282,0 chrXIII 835135 . A T 2759 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;DP=128;Dels=0.00;FS=8.231;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.568;QD=21.55;ReadPosRankSum=3.184;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2792,282,0 chrXIII 835136 . G C 2702 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=127;Dels=0.00;FS=8.081;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.998;QD=21.28;ReadPosRankSum=3.639;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:5,122:127:99:2735,282,0 chrXIII 835137 . A T 2759 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.116;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.410;QD=21.39;ReadPosRankSum=-0.685;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2792,280,0 chrXIII 835138 . G C 2766 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.11;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2799,288,0 chrXIII 838567 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3605,355,0 chrXIII 840462 . T A 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.093;QD=26.28;ReadPosRankSum=1.706;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3443,349,0 chrXIII 843285 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.302;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=-0.292;QD=22.14;ReadPosRankSum=1.665;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3409,354,0 chrXIII 843287 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.679;QD=22.19;ReadPosRankSum=1.709;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3329,340,0 chrXIII 843320 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=18.68;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2816,291,0 chrXIII 843329 . T A 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=7.380;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-1.584;QD=16.78;ReadPosRankSum=2.380;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2416,243,0 chrXIII 843332 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=17.47;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2479,252,0 chrXIII 843360 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.82;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2729,282,0 chrXIII 843513 . G A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=27.02;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4567,448,0 chrXIII 843581 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=160;Dels=0.00;FS=6.849;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.820;QD=23.42;ReadPosRankSum=2.281;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3747,376,0 chrXIII 843585 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.310;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.647;QD=23.69;ReadPosRankSum=1.709;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3577,378,0 chrXIII 843714 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.26;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4706,472,0 chrXIII 844047 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.64;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2917,286,0 chrXIII 844074 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.35;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3248,322,0 chrXIII 844487 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.35;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2444,252,0 chrXIII 844571 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.668;DP=132;Dels=0.00;FS=8.071;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.024;QD=26.18;ReadPosRankSum=3.777;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:5,126:132:99:3456,352,0 chrXIII 844681 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=151;Dels=0.00;FS=2.872;HaplotypeScore=11.6205;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.811;QD=25.48;ReadPosRankSum=2.416;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3848,405,0 chrXIII 844923 . T A 2733 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.36;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2766,285,0 chrXIII 845058 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.34;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,144:149:99:3775,391,0 chrXIII 845148 . C T 4952.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.91;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4952,502,0 chrXIII 845325 . T C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.69;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5310,565,0 chrXIII 845352 . T C 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=227;Dels=0.00;FS=11.008;HaplotypeScore=11.1472;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.504;QD=21.27;ReadPosRankSum=2.395;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4828,490,0 chrXIII 845605 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=156;Dels=0.00;FS=3.391;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.570;QD=25.22;ReadPosRankSum=1.687;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3935,397,0 chrXIII 845646 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.74;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3912,382,0 chrXIII 845686 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3835,379,0 chrXIII 846009 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.81;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3085,307,0 chrXIII 846119 . T C 2491 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.9724;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.42;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2524,255,0 chrXIII 846242 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.26;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3890,400,0 chrXIII 846261 . C A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.39;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3707,367,0 chrXIII 846356 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.37;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4090,406,0 chrXIII 846359 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.15;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4051,397,0 chrXIII 846405 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7430;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.08;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4246,421,0 chrXIII 846746 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=196;Dels=0.00;FS=8.527;HaplotypeScore=16.1403;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.374;QD=22.84;ReadPosRankSum=2.424;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4476,469,0 chrXIII 847205 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=6.873;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.415;QD=24.90;ReadPosRankSum=2.382;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3636,384,0 chrXIII 848304 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=25.49;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5097,508,0 chrXIII 848315 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.49;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4604,469,0 chrXIII 848515 . A C 2625 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.69;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2658,273,0 chrXIII 848523 . G T 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.84;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2632,270,0 chrXIII 848560 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.53;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2692,270,0 chrXIII 848621 . G C 3188 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.94;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3221,339,0 chrXIII 848759 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.48;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4554,457,0 chrXIII 848921 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4740,469,0 chrXIII 849171 . T G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=122;Dels=0.00;FS=6.072;HaplotypeScore=12.8022;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.537;QD=23.57;ReadPosRankSum=2.943;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2909,306,0 chrXIII 849201 . A T 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=13.3159;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.873;QD=23.98;ReadPosRankSum=1.678;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3126,315,0 chrXIII 849252 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=25.90;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3988,394,0 chrXIII 849836 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.645;QD=24.28;ReadPosRankSum=1.687;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3739,385,0 chrXIII 849902 . C A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4365,436,0 chrXIII 849970 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.33;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3394,349,0 chrXIII 850032 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.270;QD=24.48;ReadPosRankSum=1.703;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2971,309,0 chrXIII 850191 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2882,286,0 chrXIII 850515 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.20;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3233,319,0 chrXIII 851620 . T A 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.01;FS=8.177;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.657;QD=21.94;ReadPosRankSum=1.506;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2073,213,0 chrXIII 851744 . A G 476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=49;Dels=0.00;FS=10.476;HaplotypeScore=20.4924;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=3.724;QD=9.71;ReadPosRankSum=0.106;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:9,40:49:57:509,57,0 chrXIII 851795 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.86;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1688,174,0 chrXIII 851822 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.304;QD=23.12;ReadPosRankSum=2.386;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1813,183,0 chrXIII 851845 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.66;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1614,162,0 chrXIII 851869 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.19;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1487,153,0 chrXIII 851894 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.24;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1803,183,0 chrXIII 851914 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.53;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2332,237,0 chrXIII 852052 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=10.3876;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-1.344;QD=25.80;ReadPosRankSum=1.708;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3715,388,0 chrXIII 852220 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.48;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2259,228,0 chrXIII 852243 . G A 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=88.1629;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.927;QD=20.86;ReadPosRankSum=-0.857;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2098,186,0 chrXIII 854556 . A T 720 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.36;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:75:753,75,0 chrXIII 855635 . G T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.45;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3447,346,0 chrXIII 858420 . C A 5413.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.8397;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.53;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:5413,556,0 chrXIII 858792 . T C 6931.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.49;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6931,742,0 chrXIII 858913 . A C 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.3659;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.159;QD=20.59;ReadPosRankSum=1.700;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4509,454,0 chrXIII 858941 . G T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.3066;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.29;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4435,436,0 chrXIII 859063 . A G 581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.990;QD=20.75;ReadPosRankSum=1.609;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:63:614,63,0 chrXIII 859067 . A G 578 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.27;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:611,63,0 chrXIII 859155 . T G 634 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.38;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:667,72,0 chrXIII 859329 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.32;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2514,273,0 chrXIII 859500 . C T 5745.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5745,577,0 chrXIII 859746 . A G 8377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=346;Dels=0.00;FS=9.496;HaplotypeScore=32.1058;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.997;QD=24.21;ReadPosRankSum=2.956;SB=-4.570e+03 GT:AD:DP:GQ:PL 1/1:3,340:346:99:8377,865,0 chrXIII 859824 . G A 7422.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=25.5978;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.98;SB=-4.455e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:7422,748,0 chrXIII 859977 . C T 6195.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.88;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6195,607,0 chrXIII 860181 . C T 6345.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.00;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6345,634,0 chrXIII 861460 . A G 2964 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.9847;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=13.98;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:2997,312,0 chrXIII 861462 . G A 2930 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.8135;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=14.29;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:2963,300,0 chrXIII 861471 . T C 1566 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.436;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.9676;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-1.297;QD=7.87;ReadPosRankSum=1.541;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:1599,192,0 chrXIII 861472 . T G 1503 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.145;DP=201;Dels=0.00;FS=5.414;HaplotypeScore=7.5450;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=-2.615;QD=7.48;ReadPosRankSum=2.865;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:1536,189,0 chrXIII 861474 . C T 1509 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=-1.318;QD=7.51;ReadPosRankSum=1.525;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:1542,189,0 chrXIII 861480 . C T 2423 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=11.71;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2456,252,0 chrXIII 861520 . T C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-0.461;QD=16.94;ReadPosRankSum=1.712;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2896,300,0 chrXIII 861780 . C A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.8491;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.95;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3377,337,0 chrXIII 862051 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=20.42;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3431,351,0 chrXIII 862056 . C A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=19.57;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3308,351,0 chrXIII 862065 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=3.083;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-1.388;QD=19.80;ReadPosRankSum=1.694;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3584,364,0 chrXIII 862092 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.66;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3598,378,0 chrXIII 862215 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3536;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=22.41;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4012,421,0 chrXIII 862224 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.8537;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=23.58;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3867,385,0 chrXIII 862695 . C T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.2596;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.44;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5377,535,0 chrXIII 863526 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.74;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4866,493,0 chrXIII 868184 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.54;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3424,337,0 chrXIII 868389 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.90;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3436,355,0 chrXIII 868542 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.49;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2800,297,0 chrXIII 868833 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8726;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.244;QD=25.42;ReadPosRankSum=1.610;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3635,381,0 chrXIII 869058 . C T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.9075;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.98;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4796,490,0 chrXIII 869127 . G A 5494.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.2287;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.32;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5494,547,0 chrXIII 869313 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=138;Dels=0.00;FS=2.929;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.166;QD=24.80;ReadPosRankSum=2.395;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3422,357,0 chrXIII 869412 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.60;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2889,292,0 chrXIII 869428 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.592;QD=21.57;ReadPosRankSum=1.620;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2729,279,0 chrXIII 869543 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.38;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4144,406,0 chrXIII 869798 . G C 4974.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.62;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4974,520,0 chrXIII 869900 . T A 2916 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.39;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2949,300,0 chrXIII 869902 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.030;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.146;QD=21.41;ReadPosRankSum=2.415;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3095,310,0 chrXIII 870074 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.86;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2765,291,0 chrXIII 870128 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9712;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.63;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2514,252,0 chrXIII 870328 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.69;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3523,355,0 chrXIII 870588 . C A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3364,334,0 chrXIII 870784 . A T 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=9.9405;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.627;QD=24.13;ReadPosRankSum=1.702;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2856,286,0 chrXIII 870868 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=19.10;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2058,204,0 chrXIII 870888 . G A 2010 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=17.63;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2043,201,0 chrXIII 870889 . G A 1991 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=17.62;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2024,198,0 chrXIII 870894 . G A 2047 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=15.99;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2080,207,0 chrXIII 870922 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=18.05;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2488,255,0 chrXIII 871099 . T C 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=203;Dels=0.00;FS=9.017;HaplotypeScore=12.1019;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.563;QD=25.23;ReadPosRankSum=3.305;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:4,199:203:99:5122,538,0 chrXIII 871217 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.76;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3896,388,0 chrXIII 871306 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.59;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3967,414,0 chrXIII 871355 . A T 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.202;QD=26.16;ReadPosRankSum=1.617;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3172,319,0 chrXIII 871699 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4393,442,0 chrXIII 871808 . C A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.64;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3277,339,0 chrXIII 871880 . A G 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.108;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.135;QD=26.52;ReadPosRankSum=1.694;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4801,493,0 chrXIII 872287 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.34;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3361,337,0 chrXIII 872370 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.11;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4200,427,0 chrXIII 872374 . A C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.67;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4010,426,0 chrXIII 872669 . T G 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=200;Dels=0.00;FS=7.904;HaplotypeScore=19.9676;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.738;QD=24.31;ReadPosRankSum=2.388;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4862,505,0 chrXIII 872702 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=187;Dels=0.00;FS=10.133;HaplotypeScore=17.3860;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.973;QD=23.92;ReadPosRankSum=2.897;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4473,454,0 chrXIII 872820 . C A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.82;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3361,351,0 chrXIII 872821 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.798;QD=22.26;ReadPosRankSum=1.709;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3383,354,0 chrXIII 872837 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.682;QD=22.05;ReadPosRankSum=1.687;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3417,354,0 chrXIII 872926 . A C 5811.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.60;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5811,601,0 chrXIII 873141 . C T 4770.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.50;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4770,516,0 chrXIII 873246 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.8994;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.017;QD=24.17;ReadPosRankSum=1.713;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4447,469,0 chrXIII 873817 . G A 6248.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=15.4760;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=25.40;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:6248,628,0 chrXIII 873861 . T G 5539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=245;Dels=0.00;FS=3.710;HaplotypeScore=9.6728;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=1;MQRankSum=1.603;QD=22.61;ReadPosRankSum=1.718;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5539,580,0 chrXIII 873882 . G A 4955.01 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=1;QD=22.22;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4955,511,0 chrXIII 873884 . T C 4985.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=226;Dels=0.00;FS=12.721;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=2;MQRankSum=-1.435;QD=22.06;ReadPosRankSum=2.960;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:4,222:226:99:4985,523,0 chrXIII 873888 . C G 4897.01 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.2270;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=3;QD=21.96;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4897,499,0 chrXIII 874157 . A G 145.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=93;Dels=0.00;FS=25.646;HaplotypeScore=3.9093;MLEAC=2;MLEAF=1.00;MQ=16.32;MQ0=36;MQRankSum=-3.102;QD=1.56;ReadPosRankSum=3.197;SB=-7.356e+01 GT:AD:DP:GQ:PL 1/1:4,88:93:21:178,21,0 chrXIII 874247 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=0;QD=0.72;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:50,6,0 chrXIII 874266 . G A 80.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=0;MQRankSum=-1.379;QD=1.64;ReadPosRankSum=1.662;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,48:49:12:113,12,0 chrXIII 874272 . C T 107.26 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=0;QD=2.02;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,53:53:15:140,15,0 chrXIII 874275 . A G 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=2.15;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:18:151,18,0 chrXIII 874277 . G A 113.13 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=0;QD=1.85;SB=-5.914e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:18:146,18,0 chrXIII 874278 . C T 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=0;QD=1.85;SB=-5.914e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:18:151,18,0 chrXIII 874287 . G A 254 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=2.85;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:30:287,30,0 chrXIII 874296 . T C 385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=0.784;QD=3.63;ReadPosRankSum=-0.882;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:45:418,45,0 chrXIII 874942 . T A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DP=109;Dels=0.00;FS=2.787;HaplotypeScore=8.2480;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=2.201;QD=22.06;ReadPosRankSum=0.282;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2437,240,0 chrXIII 876109 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.029;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.703;QD=25.25;ReadPosRankSum=1.145;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:3038,289,0 chrXIII 876530 . G A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.42;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4271,421,0 chrXIII 876747 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.62;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3791,388,0 chrXIII 877786 . A T 2903 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.39;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2936,289,0 chrXIII 878991 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=7.114;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.202;QD=24.60;ReadPosRankSum=2.415;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3469,352,0 chrXIII 879141 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=4.054;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.229;QD=24.32;ReadPosRankSum=1.703;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2903,315,0 chrXIII 879271 . T A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4404,442,0 chrXIII 879414 . A G 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=224;Dels=0.00;FS=3.590;HaplotypeScore=10.5451;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.619;QD=24.89;ReadPosRankSum=1.717;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5576,592,0 chrXIII 880104 . G A 6036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=249;Dels=0.00;FS=4.650;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.000;QD=24.24;ReadPosRankSum=0.223;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:6036,604,0 chrXIII 880179 . T A 5686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=228;Dels=0.00;FS=7.047;HaplotypeScore=15.3764;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.076;QD=24.94;ReadPosRankSum=1.717;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5686,571,0 chrXIII 880236 . G T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3627;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=24.09;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3927,394,0 chrXIII 880244 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=23.37;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3576,372,0 chrXIII 880373 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.09;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2567,255,0 chrXIII 880430 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=26.95;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3477,343,0 chrXIII 880480 . A T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.5190;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.89;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3415,343,0 chrXIII 880820 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3471,346,0 chrXIII 880903 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.86;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3868,388,0 chrXIII 881269 . G C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9917;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.29;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3493,358,0 chrXIII 881283 . T A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.43;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3342,348,0 chrXIII 881617 . T C 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=186;Dels=0.00;FS=11.182;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.114;QD=23.87;ReadPosRankSum=2.919;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4439,451,0 chrXIII 881716 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.6866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3701,387,0 chrXIII 882115 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.94;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2465,240,0 chrXIII 882391 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4921;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.41;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2972,298,0 chrXIII 882406 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.09;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2944,298,0 chrXIII 882454 . G C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.91;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3660,387,0 chrXIII 882943 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.46;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4159,424,0 chrXIII 883123 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=6.597;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-2.165;QD=25.35;ReadPosRankSum=2.405;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4157,427,0 chrXIII 883144 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.194;QD=24.12;ReadPosRankSum=3.337;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3811,391,0 chrXIII 883273 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.3342;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.551;QD=24.25;ReadPosRankSum=1.712;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4195,433,0 chrXIII 883606 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.673;QD=24.83;ReadPosRankSum=1.594;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4370,451,0 chrXIII 883726 . C T 5404.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5404,538,0 chrXIII 885067 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4488,454,0 chrXIII 885211 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3940,409,0 chrXIII 885661 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3258,339,0 chrXIII 885848 . G A 5628.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=27.45;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5628,547,0 chrXIII 886989 . G T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=15.6200;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=28.94;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4138,406,0 chrXIII 887158 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4444,439,0 chrXIII 887633 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.57;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3938,406,0 chrXIII 888010 . A C 5976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=283;Dels=0.00;FS=7.380;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.294;QD=21.12;ReadPosRankSum=2.423;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:2,281:283:99:5976,610,0 chrXIII 888020 . A T 5525.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.24;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5525,547,0 chrXIII 888021 . G C 5421.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.78;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5421,559,0 chrXIII 888298 . T C 6498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=19.4409;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.657;QD=24.61;ReadPosRankSum=-0.776;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:1,260:264:99:6498,667,0 chrXIII 888449 . T C 5930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=256;Dels=0.00;FS=11.161;HaplotypeScore=17.2225;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.599;QD=23.16;ReadPosRankSum=2.964;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:3,250:256:99:5930,616,0 chrXIII 888637 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2471,264,0 chrXIII 889053 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3396,328,0 chrXIII 889102 . C T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.48;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4000,409,0 chrXIII 889183 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=153;Dels=0.00;FS=3.458;HaplotypeScore=11.0583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.053;QD=24.29;ReadPosRankSum=1.709;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3717,382,0 chrXIII 889638 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4360,442,0 chrXIII 889679 . G A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.26;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4525,451,0 chrXIII 890311 . G A 5684.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.4947;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.60;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5684,571,0 chrXIII 890524 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.2570;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.150;QD=23.39;ReadPosRankSum=1.711;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3812,405,0 chrXIII 890590 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.27;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2260,225,0 chrXIII 890848 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=116;Dels=0.00;FS=2.930;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.032;QD=25.64;ReadPosRankSum=2.407;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:3007,309,0 chrXIII 890947 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.99;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4185,412,0 chrXIII 892255 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.69;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3255,328,0 chrXIII 892535 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=23.10;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1396,144,0 chrXIII 892536 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=24.53;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1480,147,0 chrXIII 892597 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.62;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1222,132,0 chrXIII 892643 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.75;MQ0=0;QD=23.13;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1444,147,0 chrXIII 893659 . G T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4450,451,0 chrXIII 893699 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3585,375,0 chrXIII 894039 . A T 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.502;QD=24.74;ReadPosRankSum=1.667;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2680,273,0 chrXIII 896227 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.8352;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.94;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4190,436,0 chrXIII 897605 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=3.344;HaplotypeScore=11.3295;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.742;QD=23.07;ReadPosRankSum=1.715;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4729,490,0 chrXIII 897943 . T A 2091 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.73;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2124,216,0 chrXIII 898024 . T C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.077;QD=24.28;ReadPosRankSum=1.694;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2218,231,0 chrXIII 898408 . G A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4652,460,0 chrXIII 899812 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2423,255,0 chrXIII 900561 . C T 4527.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.77;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4527,460,0 chrXIII 901428 . A T 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6804;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.554;QD=23.40;ReadPosRankSum=1.696;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2326,231,0 chrXIII 901535 . A T 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.757;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.732;QD=25.41;ReadPosRankSum=1.696;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2447,246,0 chrXIII 901630 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=27.45;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3569,349,0 chrXIII 903826 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.07;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2637,279,0 chrXIII 904006 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=27.12;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2609,261,0 chrXIII 904067 . G C 1883 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.69;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1916,204,0 chrXIII 904069 . A C 1871 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.02;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1904,195,0 chrXIII 904131 . G A 1978 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.20;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2011,213,0 chrXIII 904245 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.48;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3169,327,0 chrXIII 904263 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.86;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3230,325,0 chrXIII 904370 . C T 5931.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.35;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5931,595,0 chrXIII 904506 . T C 5961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=245;Dels=0.00;FS=6.018;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.284;QD=24.33;ReadPosRankSum=2.856;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5961,610,0 chrXIII 904533 . T A 6189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=244;Dels=0.00;FS=3.307;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.673;QD=25.36;ReadPosRankSum=1.703;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:6189,625,0 chrXIII 904635 . C T 4767.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.95;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4767,496,0 chrXIII 904791 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.37;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2641,262,0 chrXIII 904920 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9872;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.69;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2499,249,0 chrXIII 905085 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3069,301,0 chrXIII 905531 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.356;QD=27.67;ReadPosRankSum=1.685;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:4095,415,0 chrXIII 905868 . G T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=27.09;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3955,385,0 chrXIII 905893 . A T 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=3.015;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.696;QD=27.27;ReadPosRankSum=2.398;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3899,388,0 chrXIII 905924 . C A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8403;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=27.16;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3504,346,0 chrXIII 905943 . A G 2676 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0756;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.93;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2709,285,0 chrXIII 906040 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2036;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.77;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3052,304,0 chrXIII 906187 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=26.57;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3427,337,0 chrXIII 906221 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.746;QD=25.93;ReadPosRankSum=1.705;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3397,354,0 chrXIII 906242 . G C 2981 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.43;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3014,315,0 chrXIII 906340 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=4.2350;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.094;QD=25.77;ReadPosRankSum=-0.604;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3324,314,0 chrXIII 906443 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.90;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3927,388,0 chrXIII 906537 . G C 2811 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.04;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2844,288,0 chrXIII 906551 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.76;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2601,258,0 chrXIII 906678 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3777,376,0 chrXIII 906784 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=2.975;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.324;QD=25.28;ReadPosRankSum=2.400;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3741,382,0 chrXIII 906926 . T G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.64;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3452,363,0 chrXIII 907438 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.13;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4175,447,0 chrXIII 907448 . A C 4436.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.47;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4436,442,0 chrXIII 907585 . T C 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=236;Dels=0.00;FS=7.446;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.256;QD=22.55;ReadPosRankSum=2.418;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5321,559,0 chrXIII 907700 . T C 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.818;DP=226;Dels=0.00;FS=7.743;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-1.094;QD=24.79;ReadPosRankSum=3.769;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:5,220:226:99:5602,562,0 chrXIII 907728 . T C 5522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.538;QD=23.50;ReadPosRankSum=1.673;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5522,550,0 chrXIII 907830 . G A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.90;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5927,586,0 chrXIII 907951 . T A 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=3.499;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.582;QD=23.40;ReadPosRankSum=1.688;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5499,547,0 chrXIII 907958 . A G 5561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=244;Dels=0.00;FS=5.890;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.459;QD=22.79;ReadPosRankSum=2.913;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:5561,562,0 chrXIII 907995 . C G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6011;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=21.38;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4233,442,0 chrXIII 908047 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=202;Dels=0.00;FS=13.279;HaplotypeScore=21.4344;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=1.424;QD=22.30;ReadPosRankSum=3.407;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:4,194:202:99:4505,463,0 chrXIII 908105 . T C 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.8357;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;MQRankSum=1.715;QD=24.15;ReadPosRankSum=1.715;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5047,520,0 chrXIII 908138 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=22.58;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4177,424,0 chrXIII 908167 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=20.60;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2526,258,0 chrXIII 908179 . T G 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;MQRankSum=-1.275;QD=16.21;ReadPosRankSum=1.351;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1524,165,0 chrXIII 908190 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=15.33;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1091,117,0 chrXIII 908196 . G C 867 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=14.95;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:900,105,0 chrXIII 908203 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=14.30;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:705,72,0 chrXIII 908215 . G A 171.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.671;DP=51;Dels=0.00;FS=19.723;HaplotypeScore=5.2953;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=1.293;QD=3.35;ReadPosRankSum=2.633;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,24:51:99:201,0,307 chrXIII 908218 . C T 537 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=43;Dels=0.00;FS=9.345;HaplotypeScore=7.2785;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.410;QD=12.49;ReadPosRankSum=-0.201;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:36:570,36,0 chrXIII 908221 . G A 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.271;DP=43;Dels=0.00;FS=20.506;HaplotypeScore=6.5446;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.194;QD=4.26;ReadPosRankSum=3.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,25:43:99:213,0,212 chrXIII 908223 . A C 195.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;DP=35;Dels=0.00;FS=9.700;HaplotypeScore=10.6926;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=0.520;QD=5.58;ReadPosRankSum=2.154;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/1:3,25:35:1:224,0,1 chrXIII 908226 . C T 276.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.752;DP=53;Dels=0.00;FS=5.482;HaplotypeScore=11.2195;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-1.013;QD=5.23;ReadPosRankSum=-0.556;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,52:53:9:309,9,0 chrXIII 908274 . C A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.293;DP=170;Dels=0.00;FS=45.074;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;MQRankSum=-2.524;QD=15.35;ReadPosRankSum=5.781;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:17,153:170:99:2642,119,0 chrXIII 908285 . G A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.146;DP=179;Dels=0.00;FS=59.439;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=1;MQRankSum=3.083;QD=0.32;ReadPosRankSum=-4.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,23:179:88:88,0,2470 chrXIII 908287 . G A 2464.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;DP=182;Dels=0.00;FS=75.173;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=1;MQRankSum=-1.506;QD=13.54;ReadPosRankSum=5.664;SB=-1.758e+03 GT:AD:DP:GQ:PL 0/1:29,153:182:61:2494,0,61 chrXIII 908298 . C T 278.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.396;DP=191;Dels=0.00;FS=99.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=1;MQRankSum=3.789;QD=1.46;ReadPosRankSum=-2.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,39:191:99:308,0,2316 chrXIII 908300 . C T 294.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.458;DP=188;Dels=0.00;FS=101.735;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=1;MQRankSum=4.381;QD=1.56;ReadPosRankSum=-2.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,39:188:99:324,0,2297 chrXIII 908306 . T G 326.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;DP=185;Dels=0.00;FS=123.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=1;MQRankSum=4.998;QD=1.76;ReadPosRankSum=-0.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,46:185:99:356,0,2248 chrXIII 908314 . T C 2155.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;DP=186;Dels=0.00;FS=149.153;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=2;MQRankSum=-4.765;QD=11.59;ReadPosRankSum=-2.664;SB=-1.145e+03 GT:AD:DP:GQ:PL 0/1:54,132:186:99:2185,0,400 chrXIII 908320 . A G 1545.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.614;DP=179;Dels=0.00;FS=163.275;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=2;MQRankSum=-4.727;QD=8.63;ReadPosRankSum=-3.252;SB=-7.880e+02 GT:AD:DP:GQ:PL 0/1:65,114:179:99:1575,0,681 chrXIII 908329 . C G 904.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.505;DP=152;Dels=0.00;FS=143.955;HaplotypeScore=5.5141;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=2;MQRankSum=5.912;QD=5.95;ReadPosRankSum=4.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,71:152:99:934,0,1069 chrXIII 908331 . A G 847.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.706;DP=149;Dels=0.00;FS=141.071;HaplotypeScore=7.8801;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=2;MQRankSum=5.502;QD=5.68;ReadPosRankSum=5.090;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,68:149:99:877,0,1146 chrXIII 908341 . A G 1122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;DP=138;Dels=0.00;FS=72.778;HaplotypeScore=10.9367;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=2;MQRankSum=3.332;QD=8.13;ReadPosRankSum=5.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,94:138:99:1152,0,320 chrXIII 908350 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=108;Dels=0.00;FS=7.002;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;MQRankSum=1.753;QD=11.34;ReadPosRankSum=1.407;SB=-1.601e+01 GT:AD:DP:GQ:PL 1/1:11,94:108:77:1258,77,0 chrXIII 908367 . A C 847.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;DP=95;Dels=0.00;FS=1.697;HaplotypeScore=33.2364;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=4.627;QD=8.92;ReadPosRankSum=-0.057;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:22,73:95:22:877,0,22 chrXIII 908370 . C T 1091 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=9.271;HaplotypeScore=20.5032;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;MQRankSum=1.136;QD=11.73;ReadPosRankSum=0.242;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1124,114,0 chrXIII 908376 . T C 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;DP=94;Dels=0.00;FS=76.997;HaplotypeScore=52.5070;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=0;MQRankSum=-3.513;QD=0.13;ReadPosRankSum=0.216;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:60,34:94:42:42,0,779 chrXIII 908414 . T G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DP=62;Dels=0.00;FS=3.716;HaplotypeScore=32.8134;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=1;MQRankSum=-3.146;QD=0.34;ReadPosRankSum=0.903;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,17:62:51:51,0,255 chrXIII 908418 . C A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;DP=52;Dels=0.00;FS=32.123;HaplotypeScore=35.7717;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=1;MQRankSum=3.786;QD=2.21;ReadPosRankSum=-1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,12:52:86:145,0,86 chrXIII 908419 . A G 180.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;DP=50;Dels=0.00;FS=94.251;HaplotypeScore=32.1875;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=1;MQRankSum=-0.110;QD=3.60;ReadPosRankSum=-5.030;SB=-5.639e-02 GT:AD:DP:GQ:PL 0/1:26,24:50:16:210,0,16 chrXIII 908437 . C G 61.05 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=31;Dels=0.00;FS=61.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=1;MQRankSum=-2.172;QD=1.97;ReadPosRankSum=-1.493;SB=-1.864e+00 GT:AD:DP:GQ:PL 0/1:22,9:31:17:91,0,17 chrXIII 908439 . A G 56.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DP=31;Dels=0.00;FS=61.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=1;MQRankSum=-0.815;QD=1.81;ReadPosRankSum=-0.498;SB=-1.855e+00 GT:AD:DP:GQ:PL 0/1:22,9:31:18:86,0,18 chrXIII 908449 . A G 56.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.038;DP=28;Dels=0.00;FS=69.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=1;MQRankSum=-1.582;QD=2.00;ReadPosRankSum=2.285;SB=-3.042e+00 GT:AD:DP:GQ:PL 0/1:18,10:28:18:86,0,18 chrXIII 908458 . T C 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;DP=42;Dels=0.00;FS=17.652;HaplotypeScore=30.4477;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=1;MQRankSum=0.653;QD=1.29;ReadPosRankSum=4.387;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:32,10:42:31:84,0,31 chrXIII 908467 . A G 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;DP=41;Dels=0.00;FS=7.839;HaplotypeScore=20.8148;MLEAC=1;MLEAF=0.500;MQ=22.46;MQ0=0;MQRankSum=-1.412;QD=2.49;ReadPosRankSum=-4.690;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:10,31:41:66:132,0,66 chrXIII 908470 . T C 104.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DP=43;Dels=0.00;FS=3.938;HaplotypeScore=20.8102;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=0;MQRankSum=-1.646;QD=2.42;ReadPosRankSum=-3.590;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:14,29:43:68:134,0,68 chrXIII 908473 . G A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;DP=44;Dels=0.00;FS=3.627;HaplotypeScore=15.9240;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=0;MQRankSum=1.021;QD=0.91;ReadPosRankSum=2.810;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:30,14:44:70:70,0,131 chrXIII 908478 . C T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9841;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=0;MQRankSum=1.225;QD=0.55;ReadPosRankSum=2.675;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:32,12:44:54:54,0,179 chrXIII 908479 . T C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DP=44;Dels=0.00;FS=7.784;HaplotypeScore=3.9841;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=0;MQRankSum=0.994;QD=0.55;ReadPosRankSum=3.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,10:44:54:54,0,185 chrXIII 908484 . T C 282 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9904;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=0;QD=6.41;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:39:315,39,0 chrXIII 908498 . G T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;DP=57;Dels=0.00;FS=17.101;HaplotypeScore=10.7850;MLEAC=1;MLEAF=0.500;MQ=23.87;MQ0=0;MQRankSum=-0.736;QD=0.58;ReadPosRankSum=-1.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,9:57:63:63,0,199 chrXIII 908499 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DP=61;Dels=0.00;FS=21.084;HaplotypeScore=33.2100;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=-0.763;QD=0.41;ReadPosRankSum=-1.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,9:61:55:55,0,252 chrXIII 908506 . T C 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.822;DP=72;Dels=0.00;FS=16.669;HaplotypeScore=70.0138;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=0;MQRankSum=-0.869;QD=0.22;ReadPosRankSum=-1.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,8:72:46:46,0,328 chrXIII 908511 . A C 158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.337;DP=72;Dels=0.00;FS=4.672;HaplotypeScore=54.3026;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=0;MQRankSum=-1.400;QD=2.19;ReadPosRankSum=5.887;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:32,40:72:99:188,0,164 chrXIII 908514 . C T 267.52 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DP=70;Dels=0.00;FS=11.236;HaplotypeScore=42.8348;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=0;MQRankSum=-0.598;QD=3.82;ReadPosRankSum=3.766;SB=-7.265e+02 GT:AD:DP:GQ:PL 0/1:6,64:70:6:297,0,6 chrXIII 908516 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.133;DP=70;Dels=0.00;FS=69.838;HaplotypeScore=42.8348;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=0;MQRankSum=4.045;QD=0.20;ReadPosRankSum=0.418;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,14:70:44:44,0,267 chrXIII 908522 . T G 342 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=24.4489;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=0;QD=5.26;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:45:375,45,0 chrXIII 908534 . T G 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.343;DP=63;Dels=0.00;FS=5.257;HaplotypeScore=40.0637;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=-0.219;QD=2.37;ReadPosRankSum=0.842;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:39,24:63:99:179,0,198 chrXIII 908535 . C T 152.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DP=63;Dels=0.00;FS=5.257;HaplotypeScore=53.7376;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=0.814;QD=2.41;ReadPosRankSum=0.573;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:39,24:63:99:182,0,199 chrXIII 908537 . G A 156.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=63;Dels=0.00;FS=5.257;HaplotypeScore=53.7376;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=2.158;QD=2.48;ReadPosRankSum=0.035;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:39,24:63:99:186,0,199 chrXIII 908539 . G T 166.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;DP=63;Dels=0.00;FS=1.101;HaplotypeScore=67.4006;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=-1.610;QD=2.64;ReadPosRankSum=-2.930;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:25,24:63:79:196,0,79 chrXIII 908545 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.573;DP=62;Dels=0.00;FS=14.010;HaplotypeScore=130.9226;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=1.693;QD=0.56;ReadPosRankSum=6.199;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:37,25:62:65:65,0,288 chrXIII 908550 . C T 95.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;DP=59;Dels=0.00;FS=3.586;HaplotypeScore=94.7771;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=0;MQRankSum=1.584;QD=1.61;ReadPosRankSum=0.523;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:30,29:59:99:125,0,168 chrXIII 908551 . T C 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=59;Dels=0.00;FS=44.323;HaplotypeScore=94.7771;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=0;MQRankSum=-3.198;QD=0.21;ReadPosRankSum=-2.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,14:59:42:42,0,242 chrXIII 908552 . C T 158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;DP=57;Dels=0.00;FS=94.433;HaplotypeScore=94.7771;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=0;MQRankSum=4.485;QD=2.77;ReadPosRankSum=-1.576;SB=-5.902e+01 GT:AD:DP:GQ:PL 0/1:24,33:57:99:188,0,122 chrXIII 908554 . A G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.927;DP=57;Dels=0.00;FS=64.556;HaplotypeScore=108.4523;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=0;MQRankSum=3.072;QD=0.18;ReadPosRankSum=2.311;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,15:57:40:40,0,216 chrXIII 908558 . T A,G 240.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=11.139;HaplotypeScore=23.2992;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.52;MQ0=0;MQRankSum=-0.466;QD=4.53;ReadPosRankSum=1.666;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/2:1,26,25:53:99:300,170,155,130,0,103 chrXIII 908563 . A G 98.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;DP=53;Dels=0.00;FS=123.798;HaplotypeScore=53.7548;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=0;MQRankSum=-4.262;QD=1.85;ReadPosRankSum=5.638;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:29,24:53:99:128,0,151 chrXIII 908566 . T C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.263;DP=56;Dels=0.00;FS=62.908;HaplotypeScore=70.6641;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=3.535;QD=1.16;ReadPosRankSum=-2.889;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:32,24:56:95:95,0,203 chrXIII 908570 . T G 116.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.167;DP=56;Dels=0.00;FS=3.989;HaplotypeScore=82.3537;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=-0.746;QD=2.07;ReadPosRankSum=-1.728;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:38,18:56:99:146,0,197 chrXIII 908571 . C T 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;DP=55;Dels=0.00;FS=4.097;HaplotypeScore=96.1147;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=0.673;QD=2.27;ReadPosRankSum=-1.552;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:37,18:55:99:155,0,191 chrXIII 908573 . G A 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DP=54;Dels=0.00;FS=21.984;HaplotypeScore=105.8935;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=0;MQRankSum=2.618;QD=1.57;ReadPosRankSum=-2.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,8:54:99:115,0,242 chrXIII 908575 . G T 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DP=55;Dels=0.00;FS=37.764;HaplotypeScore=106.7239;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=3.533;QD=1.80;ReadPosRankSum=-1.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,8:55:99:129,0,154 chrXIII 908578 . T C 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DP=67;Dels=0.00;FS=76.981;HaplotypeScore=138.3325;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=-3.740;QD=0.69;ReadPosRankSum=5.714;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,14:67:76:76,0,286 chrXIII 908581 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=67;Dels=0.00;FS=71.710;HaplotypeScore=126.2150;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=0;MQRankSum=-3.729;QD=0.73;ReadPosRankSum=5.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,14:67:79:79,0,267 chrXIII 908586 . C T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=64;Dels=0.00;FS=0.996;HaplotypeScore=66.2576;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=0;MQRankSum=0.110;QD=0.25;ReadPosRankSum=-4.224;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:39,25:64:46:46,0,297 chrXIII 908588 . C T 188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.388;DP=64;Dels=0.00;FS=116.254;HaplotypeScore=66.2576;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=0;MQRankSum=4.796;QD=2.94;ReadPosRankSum=0.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,34:64:99:218,0,147 chrXIII 908594 . T A,G 317.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7579;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.23;MQ0=0;MQRankSum=-1.636;QD=4.40;ReadPosRankSum=1.684;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/2:1,29,42:72:99:377,159,135,218,0,194 chrXIII 908599 . G A 296.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.331;DP=84;Dels=0.00;FS=155.016;HaplotypeScore=35.9609;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=4.423;QD=3.52;ReadPosRankSum=-0.414;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,70:84:73:326,0,73 chrXIII 908602 . T C 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=93;Dels=0.00;FS=40.423;HaplotypeScore=35.9609;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=0;MQRankSum=2.320;QD=1.87;ReadPosRankSum=2.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,42:93:99:204,0,192 chrXIII 908606 . T G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;DP=102;Dels=0.00;FS=142.508;HaplotypeScore=33.0407;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-3.733;QD=0.39;ReadPosRankSum=-2.384;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:91,11:102:70:70,0,355 chrXIII 908607 . C T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=102;Dels=0.00;FS=142.508;HaplotypeScore=33.8294;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-3.808;QD=0.39;ReadPosRankSum=-2.924;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:91,11:102:70:70,0,351 chrXIII 908608 . A G 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.989;DP=103;Dels=0.00;FS=36.220;HaplotypeScore=33.8294;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=2.147;QD=1.48;ReadPosRankSum=1.633;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,52:103:99:182,0,215 chrXIII 908617 . G C 258.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.122;DP=109;Dels=0.00;FS=2.884;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=0;MQRankSum=-1.407;QD=2.37;ReadPosRankSum=-0.473;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:44,64:109:99:288,0,156 chrXIII 908629 . A G 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.570;DP=128;Dels=0.00;FS=2.821;HaplotypeScore=1.8255;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.498;QD=0.99;ReadPosRankSum=3.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,49:128:99:157,0,409 chrXIII 908634 . A C 761 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.85;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:81:794,81,0 chrXIII 908638 . T C 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=1.8255;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.324;QD=1.17;ReadPosRankSum=3.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,52:131:99:183,0,458 chrXIII 908642 . G T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.355;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.272;QD=0.13;ReadPosRankSum=3.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,52:131:47:47,0,426 chrXIII 908643 . T C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=-1.509;QD=0.13;ReadPosRankSum=2.864;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:79,53:132:47:47,0,464 chrXIII 908645 . A G 96.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=0;MQRankSum=-0.570;QD=0.72;ReadPosRankSum=2.192;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:79,54:133:99:126,0,462 chrXIII 908647 . G A 127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=136;Dels=0.00;FS=8.870;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-0.767;QD=0.93;ReadPosRankSum=1.045;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:79,57:136:99:157,0,436 chrXIII 908659 . T C 630.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;DP=161;Dels=0.00;FS=34.585;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=-0.346;QD=3.91;ReadPosRankSum=-3.350;SB=-5.400e+02 GT:AD:DP:GQ:PL 0/1:70,91:161:99:660,0,236 chrXIII 908660 . T C 638.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;DP=164;Dels=0.00;FS=49.610;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=29.74;MQ0=0;MQRankSum=-1.085;QD=3.89;ReadPosRankSum=-3.848;SB=-6.600e+02 GT:AD:DP:GQ:PL 0/1:69,95:164:99:668,0,238 chrXIII 908671 . G A 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.497;DP=171;Dels=0.00;FS=69.080;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=0;MQRankSum=-1.659;QD=0.75;ReadPosRankSum=2.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,56:171:99:158,0,1183 chrXIII 908678 . C T 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;DP=166;Dels=0.00;FS=75.369;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=32.15;MQ0=0;MQRankSum=-1.492;QD=0.35;ReadPosRankSum=0.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,46:166:88:88,0,1589 chrXIII 908679 . T C 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=165;Dels=0.00;FS=79.257;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=0.194;QD=0.33;ReadPosRankSum=-0.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,46:165:84:84,0,1525 chrXIII 908906 . A T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.09;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3943,394,0 chrXIII 908913 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.55;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4224,412,0 chrXIII 909175 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=20.6878;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.16;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4942,514,0 chrXIII 909413 . G A 4029.01 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.43;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4029,415,0 chrXIII 909416 . T C 4168.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.706;QD=22.05;ReadPosRankSum=1.659;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4168,421,0 chrXIII 909421 . C A 4105.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.73;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4105,421,0 chrXIII 909483 . G C 4498.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.32;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4498,460,0 chrXIII 909590 . C T 6196.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.4514;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=26.25;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6196,619,0 chrXIII 909664 . T C 6299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.0605;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.336;QD=25.71;ReadPosRankSum=1.647;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:6299,634,0 chrXIII 909772 . A C 5269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.564;QD=20.27;ReadPosRankSum=1.691;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:1,254:260:99:5269,547,0 chrXIII 909786 . G C 5351.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.27;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5351,559,0 chrXIII 909807 . G C 5657.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.20;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:5657,583,0 chrXIII 909879 . A G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=250;Dels=0.00;FS=3.007;HaplotypeScore=24.1755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.685;QD=23.57;ReadPosRankSum=2.410;SB=-3.158e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5892,607,0 chrXIII 909920 . G A 6474.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.1371;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.25;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6474,667,0 chrXIII 909953 . C G 6373.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.7445;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.51;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6373,694,0 chrXIII 909982 . A G 6212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=4.139;HaplotypeScore=13.2067;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.077;QD=24.95;ReadPosRankSum=1.704;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:6212,652,0 chrXIII 910076 . A G 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.025;QD=23.46;ReadPosRankSum=1.715;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4856,505,0 chrXIII 910262 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.05;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4409,436,0 chrXIII 910346 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=19.76;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3715,396,0 chrXIII 910352 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=19.60;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3880,403,0 chrXIII 910375 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=16.41;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:3118,318,0 chrXIII 910380 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.5636;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=16.51;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3104,312,0 chrXIII 910439 . G A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.6513;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.60;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4474,448,0 chrXIII 910543 . T C 6177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.062;QD=24.22;ReadPosRankSum=1.705;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:1,252:255:99:6177,652,0 chrXIII 910574 . A G 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=234;Dels=0.00;FS=2.214;HaplotypeScore=12.9618;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=1.297;QD=23.90;ReadPosRankSum=2.841;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5592,568,0 chrXIII 910606 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=229;Dels=0.00;FS=3.028;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.974;QD=23.10;ReadPosRankSum=2.428;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5291,553,0 chrXIII 910733 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.11;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5111,505,0 chrXIII 910814 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.4541;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.28;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3933,400,0 chrXIII 910955 . A T 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.170;QD=24.53;ReadPosRankSum=1.664;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2535,252,0 chrXIII 911382 . A T 6270.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.49;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6270,649,0 chrXIII 911502 . T C 6571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=281;Dels=0.00;FS=3.019;HaplotypeScore=14.6019;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.403;QD=23.38;ReadPosRankSum=2.432;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:6571,679,0 chrXIII 912021 . T C 6290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=298;Dels=0.00;FS=4.984;HaplotypeScore=26.6672;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.727;QD=21.11;ReadPosRankSum=1.661;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,293:298:99:6290,640,0 chrXIII 912213 . C G 4683.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.91;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:4683,478,0 chrXIII 912216 . T G 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=230;Dels=0.00;FS=2.993;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.498;QD=21.69;ReadPosRankSum=2.407;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4988,508,0 chrXIII 912263 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.5427;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.36;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4528,463,0 chrXIII 912411 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.316;QD=24.77;ReadPosRankSum=1.663;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4954,514,0 chrXIII 912463 . C G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.19;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3652,387,0 chrXIII 912626 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.16;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1990,195,0 chrXIII 912804 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.40;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2863,294,0 chrXIII 912820 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.261;QD=24.49;ReadPosRankSum=1.699;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2629,273,0 chrXIII 912879 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.27;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2994,301,0 chrXIII 913190 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.0828;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.05;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3391,334,0 chrXIII 913429 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.18;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3979,412,0 chrXIII 913447 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.33;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3391,357,0 chrXIII 913525 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0469;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.55;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3695,376,0 chrXIII 913531 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=183;Dels=0.00;FS=2.706;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.161;QD=19.20;ReadPosRankSum=2.409;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3514,361,0 chrXIII 913648 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=118;Dels=0.00;FS=9.836;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.351;QD=24.24;ReadPosRankSum=2.941;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2893,300,0 chrXIII 914143 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=2.664;HaplotypeScore=8.0042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.031;QD=24.15;ReadPosRankSum=2.409;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4395,448,0 chrXIII 914575 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.680;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.200;QD=22.59;ReadPosRankSum=1.638;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3321,342,0 chrXIII 914895 . A T 2408 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.12;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2441,249,0 chrXIII 914897 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.536;QD=21.49;ReadPosRankSum=1.701;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2461,249,0 chrXIII 915182 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=4.260;HaplotypeScore=9.1982;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.567;QD=25.46;ReadPosRankSum=1.711;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4277,436,0 chrXIII 915420 . A C 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=3.066;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.730;QD=23.87;ReadPosRankSum=1.673;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5609,598,0 chrXIII 915435 . A T 5763.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.33;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5763,589,0 chrXIII 916916 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3279,325,0 chrXIII 917195 . G C 2794 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.48;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2827,303,0 chrXIII 917437 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=25.26;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3266,345,0 chrXIII 917493 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=25.29;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2815,283,0 chrXIII 917789 . C T 1230 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=11;QD=15.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1263,132,0 chrXIII 918158 . T C 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.28;MQ0=22;MQRankSum=-1.683;QD=1.81;ReadPosRankSum=-0.248;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,9:31:62:86,0,62 chrXIII 918178 . T C 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.04;MQ0=34;MQRankSum=-2.083;QD=2.13;ReadPosRankSum=-0.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,16:47:55:130,0,55 chrXIII 918219 . C T 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=40;MQRankSum=0.670;QD=4.69;ReadPosRankSum=0.765;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:29,33:62:28:321,0,28 chrXIII 918260 . T C 319 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=11;MQRankSum=0.248;QD=9.97;ReadPosRankSum=1.569;SB=-3.000e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:36:352,36,0 chrXIII 918263 . G A 310 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=11;QD=9.69;SB=-3.000e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:36:343,36,0 chrXIII 918312 . A G 47.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;DP=23;Dels=0.00;FS=6.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.49;MQ0=6;MQRankSum=0.522;QD=2.05;ReadPosRankSum=0.373;SB=-4.913e+01 GT:AD:DP:GQ:PL 0/1:3,20:23:14:77,0,14 chrXIII 918313 . G A 47.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;DP=23;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.34;MQ0=7;MQRankSum=0.397;QD=2.05;ReadPosRankSum=0.397;SB=-5.036e+01 GT:AD:DP:GQ:PL 0/1:3,20:23:13:77,0,13 chrXIII 918322 . G A 56.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=13.33;MQ0=7;QD=2.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:9:89,9,0 chrXIII 918325 . C A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=29;Dels=0.00;FS=3.090;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=11.12;MQ0=18;MQRankSum=-0.382;QD=0.56;ReadPosRankSum=0.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,16:29:43:46,0,43 chrXIII 918497 . T C 647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=42;Dels=0.00;FS=5.099;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=3;MQRankSum=-0.162;QD=15.40;ReadPosRankSum=2.986;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:4,38:42:81:680,81,0 chrXIII 918509 . C A 526.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.74;MQ0=33;MQRankSum=0.490;QD=7.97;ReadPosRankSum=0.490;SB=-1.229e+02 GT:AD:DP:GQ:PL 1/1:28,38:66:29:559,29,0 chrXIII 918585 . G A 470.08 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;DP=238;Dels=0.00;FS=24.551;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=10.41;MQ0=179;MQRankSum=-0.942;QD=1.98;ReadPosRankSum=1.780;SB=-3.709e+01 GT:AD:DP:GQ:PL 1/1:143,95:238:20:503,20,0 chrXIII 918675 . G A 145.13 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=14;QD=4.84;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:178,18,0 chrXIII 919945 . T C 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.69;MQ0=4;QD=0.76;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:6:58,6,0 chrXIII 919972 . A T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=21.0651;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=1;QD=0.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:6:56,6,0 chrXIII 920069 . G A 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.688;DP=333;Dels=0.00;FS=26.977;HaplotypeScore=28.3135;MLEAC=1;MLEAF=0.500;MQ=13.78;MQ0=178;MQRankSum=0.508;QD=0.98;ReadPosRankSum=-0.383;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:241,88:333:99:355,0,1893 chrXIII 920085 . A G 2096.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.684;DP=345;Dels=0.00;FS=29.431;HaplotypeScore=26.1657;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=131;MQRankSum=1.345;QD=6.08;ReadPosRankSum=1.732;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:170,172:345:99:2126,0,1258 chrXIII 920153 . T C 2543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.842;DP=284;Dels=0.00;FS=38.799;HaplotypeScore=8.2695;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=32;MQRankSum=4.020;QD=8.95;ReadPosRankSum=-1.123;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:132,152:284:99:2573,0,1509 chrXIII 920330 . C A 471 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.47;MQ0=140;QD=2.93;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,158:161:48:504,48,0 chrXIII 921206 . A G 649 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=32;Dels=0.00;FS=14.771;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=1;MQRankSum=1.617;QD=20.28;ReadPosRankSum=1.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,29:32:75:682,75,0 chrXIII 921911 . C T 239.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=3;QD=9.19;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,25:26:27:272,27,0 chrXIII 921949 . A C 368 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=1;QD=6.94;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:42:401,42,0 chrXIII 921982 . G A 439 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.54;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:51:472,51,0 chrXIII 922002 . A G 319 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.18;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:352,36,0 chrXIII 922056 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=4.36;SB=-3.080e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:53,6,0 chrXIII 922111 . G A 1541 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=25.26;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1574,156,0 chrXIII 922118 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.973;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;MQRankSum=-1.575;QD=23.32;ReadPosRankSum=1.470;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1572,159,0 chrXIII 922258 . C T 166.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:199,21,0 chrXIII 922267 . T A 217.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.69;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:250,24,0 chrXIII 922282 . A C 349 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.81;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:382,42,0 chrXIII 922667 . C T 1137 filter AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=12.6654;MLEAC=2;MLEAF=1.00;MQ=9.98;MQ0=141;QD=3.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:1170,158,0 chrXIII 922946 . C T 278 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;QD=11.58;SB=-2.502e+01 GT:AD:DP:GQ:PL 1/1:0,22:24:30:311,30,0 chrXIII 922949 . T C 239.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=4;MQRankSum=1.576;QD=9.19;ReadPosRankSum=1.576;SB=-2.402e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:27:272,27,0 chrXIII 922967 . T C 215.01 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=49;QD=2.95;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:27:248,27,0 chrXIII 923132 . G T 2316 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.5636;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=14.30;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2349,243,0 chrXIII 923175 . C A 1813 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=9.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:1846,198,0 chrXIII 923178 . A G 1678 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.392;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=2.468;QD=9.07;ReadPosRankSum=2.688;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:5,180:185:75:1711,75,0 chrXIII 923183 . A G 1558 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=9.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:1591,177,0 chrXIII 923197 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=8.36;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1321,141,0 chrXIII 923206 . C T 1284 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=9.17;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1317,129,0 chrXIII 923213 . T C 1042 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=8.47;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1075,108,0 chrXIII 923214 . A G 1008 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=8.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1041,108,0 chrXIII 923238 . G A 183.06 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=42.3745;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=4.16;SB=-3.107e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:21:216,21,0 chrXIII 923239 . C T 214.03 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=42.3745;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=4.86;SB=-2.904e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:24:247,24,0 chrXIII 923241 . G A 217.03 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=42.3745;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=4.93;SB=-3.104e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:24:250,24,0 chrXIII 923244 . A T 223.03 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=4.55;SB=-3.104e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:24:256,24,0 chrXIII 923260 . G A 200.03 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=24.3811;MLEAC=2;MLEAF=1.00;MQ=21.91;MQ0=0;QD=3.39;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:24:233,24,0 chrXIII 923270 . G A 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;DP=70;Dels=0.00;FS=15.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.38;MQ0=0;MQRankSum=1.178;QD=0.26;ReadPosRankSum=-0.097;SB=0.163 GT:AD:DP:GQ:PL 0/1:59,11:70:48:48,0,72 chrXIII 923271 . T C 108.26 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=0;QD=1.57;SB=-1.653e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:15:141,15,0 chrXIII 923276 . C A 24.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.011;DP=73;Dels=0.00;FS=12.335;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=17.45;MQ0=0;MQRankSum=2.285;QD=0.33;ReadPosRankSum=0.296;SB=0.490 GT:AD:DP:GQ:PL 0/1:60,13:73:21:54,0,21 chrXIII 923281 . C A 32.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.742;DP=71;Dels=0.00;FS=9.786;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=1;MQRankSum=2.477;QD=0.46;ReadPosRankSum=0.559;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:58,13:71:6:64,6,0 chrXIII 923299 . T C 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=11.263;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=2;MQRankSum=-1.117;QD=9.16;ReadPosRankSum=1.700;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1031,111,0 chrXIII 923430 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=96;Dels=0.00;FS=2.593;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=1;MQRankSum=1.117;QD=22.69;ReadPosRankSum=2.926;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2211,231,0 chrXIII 923455 . G A 251 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=1;QD=13.21;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:284,33,0 chrXIII 923469 . T A 98.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=16.42;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:131,12,0 chrXIII 923473 . C T 220.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=14.67;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:253,24,0 chrXIII 923478 . G T 353 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=16.05;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:36:386,36,0 chrXIII 923486 . T C 462 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=14.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;MQRankSum=-1.509;QD=14.90;ReadPosRankSum=1.621;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:51:495,51,0 chrXIII 923489 . A G 486 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=15.19;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:51:519,51,0 chrXIII 923490 . C T 501 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=14.74;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:51:534,51,0 chrXIII 923508 . A C 1009 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=16.54;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1042,108,0 chrXIII 923556 . T C 1637 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=18.19;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1670,183,0 chrXIII 923566 . A G 394.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=88;Dels=0.00;FS=1.307;HaplotypeScore=78.1913;MLEAC=1;MLEAF=0.500;MQ=31.55;MQ0=0;MQRankSum=-0.515;QD=4.48;ReadPosRankSum=1.939;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:57,31:88:99:424,0,946 chrXIII 923585 . T C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.408;DP=59;Dels=0.00;FS=19.110;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;MQRankSum=0.314;QD=19.80;ReadPosRankSum=1.236;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1201,126,0 chrXIII 923589 . G A 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.023;DP=54;Dels=0.00;FS=21.556;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;MQRankSum=1.580;QD=20.28;ReadPosRankSum=1.397;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1128,114,0 chrXIII 923602 . T G 735 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.7885;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.37;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:81:768,81,0 chrXIII 923606 . A T 540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.770;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.7885;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.269;QD=14.21;ReadPosRankSum=0.125;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:8,30:38:57:573,57,0 chrXIII 923615 . A T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.756;QD=1.11;ReadPosRankSum=-0.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,6:28:61:61,0,369 chrXIII 923621 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=6.9710;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.325;QD=0.49;ReadPosRankSum=0.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,5:25:42:42,0,319 chrXIII 923629 . A T 228.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=7.7597;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.25;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:261,27,0 chrXIII 923636 . C A 119.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.04;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:152,15,0 chrXIII 923654 . T C 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=18.195;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=1;MQRankSum=1.932;QD=4.25;ReadPosRankSum=2.637;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:7,5:12:9:83,9,0 chrXIII 923659 . T A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=15;Dels=0.00;FS=13.877;HaplotypeScore=3.6962;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=1;MQRankSum=-2.899;QD=3.13;ReadPosRankSum=-1.485;SB=-2.004e+01 GT:AD:DP:GQ:PL 0/1:4,11:15:37:77,0,37 chrXIII 923707 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=1;QD=22.60;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:711,78,0 chrXIII 923712 . T C 657 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=3;QD=20.53;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:78:690,78,0 chrXIII 923718 . A G 669 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=4;QD=20.27;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:78:702,78,0 chrXIII 923767 . A C 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.46;MQ0=3;QD=3.66;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrXIII 923782 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.82;MQ0=3;QD=1.72;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXIII 923809 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=0;QD=1.34;SB=-4.426e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrXIII 923830 . T G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=0;MQRankSum=0.791;QD=1.71;ReadPosRankSum=1.423;SB=-7.351e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:6:50,6,0 chrXIII 923831 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=0;MQRankSum=0.791;QD=1.80;ReadPosRankSum=1.423;SB=-7.451e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:6:51,6,0 chrXIII 923847 . G A 116.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=1;QD=6.84;SB=-1.082e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:15:149,15,0 chrXIII 923857 . A G 139.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=1;QD=6.63;SB=-1.301e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:18:172,18,0 chrXIII 923863 . G A 155.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.73;MQ0=1;QD=6.46;SB=-1.301e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:21:188,21,0 chrXIII 923915 . C A 212.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.684;DP=36;Dels=0.00;FS=20.338;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;MQRankSum=0.589;QD=5.90;ReadPosRankSum=-0.306;SB=-8.055e+01 GT:AD:DP:GQ:PL 1/1:6,30:36:4:243,4,0 chrXIII 923948 . A T 149.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=31.0351;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;MQRankSum=0.308;QD=5.32;ReadPosRankSum=-1.876;SB=-1.987e+02 GT:AD:DP:GQ:PL 1/1:6,22:28:21:182,21,0 chrXIII 923952 . G A 31.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.178;DP=27;Dels=0.00;FS=17.374;HaplotypeScore=52.5712;MLEAC=1;MLEAF=0.500;MQ=22.46;MQ0=0;MQRankSum=-0.752;QD=1.15;ReadPosRankSum=-3.615;SB=-7.092e+00 GT:AD:DP:GQ:PL 0/1:13,14:27:13:61,0,13 chrXIII 924014 . A G 249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.594;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=1;MQRankSum=-2.293;QD=15.56;ReadPosRankSum=2.123;SB=-8.399e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:39:282,39,0 chrXIII 924033 . A G 249 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.38;MQ0=1;QD=17.79;SB=-8.699e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:39:282,39,0 chrXIII 924037 . G C 249 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=2;QD=16.60;SB=-8.699e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:282,39,0 chrXIII 924039 . A G 335 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=2;QD=16.75;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:51:368,51,0 chrXIII 924046 . G A 446 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=5;QD=12.05;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,35:37:66:479,66,0 chrXIII 924092 . T C 247.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=33;Dels=0.00;FS=3.917;HaplotypeScore=14.7371;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=4;MQRankSum=-1.000;QD=7.49;ReadPosRankSum=4.074;SB=-1.281e+02 GT:AD:DP:GQ:PL 0/1:8,25:33:14:277,0,14 chrXIII 924096 . G A 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=18.6722;MLEAC=1;MLEAF=0.500;MQ=19.67;MQ0=4;MQRankSum=0.923;QD=2.00;ReadPosRankSum=-4.614;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:28,12:40:99:110,0,264 chrXIII 924098 . A G 210.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=20.3796;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=4;MQRankSum=-1.837;QD=5.12;ReadPosRankSum=4.532;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:15,24:40:99:240,0,162 chrXIII 924106 . A T 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DP=44;Dels=0.00;FS=2.909;HaplotypeScore=17.2239;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=4;MQRankSum=1.996;QD=4.05;ReadPosRankSum=-4.775;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:26,16:44:99:208,0,249 chrXIII 924136 . C G 372 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=19.4275;MLEAC=2;MLEAF=1.00;MQ=19.95;MQ0=4;QD=11.62;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:31:51:405,51,0 chrXIII 924155 . C T 208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DP=22;Dels=0.05;FS=6.767;HaplotypeScore=14.4579;MLEAC=2;MLEAF=1.00;MQ=20.26;MQ0=1;MQRankSum=0.000;QD=9.45;ReadPosRankSum=1.799;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:3,18:21:30:241,30,0 chrXIII 924183 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=30.6170;MLEAC=2;MLEAF=1.00;MQ=20.87;MQ0=0;QD=2.60;SB=-1.145e+02 GT:AD:DP:GQ:PL 1/1:0,19:21:12:87,12,0 chrXIII 924224 . C G 178.01 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.9262;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=0;QD=7.42;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:211,27,0 chrXIV 6415 . C A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=11.87;MQ0=82;MQRankSum=0.996;QD=1.28;ReadPosRankSum=0.725;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,32:100:99:158,0,213 chrXIV 6602 . C A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;DP=52;Dels=0.00;FS=19.632;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=18;MQRankSum=1.969;QD=0.81;ReadPosRankSum=2.578;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,8:52:72:72,0,480 chrXIV 6603 . A G 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DP=50;Dels=0.00;FS=19.632;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=16;MQRankSum=1.522;QD=0.84;ReadPosRankSum=2.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,8:50:72:72,0,489 chrXIV 6652 . C A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DP=256;Dels=0.02;FS=0.000;HaplotypeScore=332.7706;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=17;MQRankSum=0.193;QD=0.16;ReadPosRankSum=1.217;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:234,17:252:71:71,0,1014 chrXIV 6705 . C A 85.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.159;DP=362;Dels=0.00;FS=16.255;HaplotypeScore=866.7413;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=0;MQRankSum=0.969;QD=0.24;ReadPosRankSum=-3.361;SB=-1.775e+02 GT:AD:DP:GQ:PL 1/1:16,344:361:12:118,12,0 chrXIV 6717 . T C 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.664;DP=380;Dels=0.04;FS=26.400;HaplotypeScore=1202.3562;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;MQRankSum=4.765;QD=0.42;ReadPosRankSum=-0.721;SB=-7.406e+01 GT:AD:DP:GQ:PL 1/1:126,240:366:21:194,21,0 chrXIV 6726 . T C 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.975;DP=398;Dels=0.02;FS=14.668;HaplotypeScore=822.0836;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=0;MQRankSum=11.496;QD=0.55;ReadPosRankSum=0.011;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:207,182:389:59:250,0,59 chrXIV 6727 . G C 218.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;DP=396;Dels=0.02;FS=17.411;HaplotypeScore=510.8675;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=6.907;QD=0.55;ReadPosRankSum=3.997;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:87,285:387:58:248,0,58 chrXIV 6729 . A T 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DP=408;Dels=0.02;FS=71.789;HaplotypeScore=446.4178;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=0;MQRankSum=9.046;QD=0.55;ReadPosRankSum=1.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,174:399:99:255,0,134 chrXIV 6731 . G C 513 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=406;Dels=0.02;FS=0.000;HaplotypeScore=593.2871;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;QD=1.26;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,397:397:60:546,60,0 chrXIV 6734 . T C 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350;DP=425;Dels=0.00;FS=42.898;HaplotypeScore=442.9497;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=0;MQRankSum=-1.715;QD=0.12;ReadPosRankSum=-4.329;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:390,35:425:83:83,0,389 chrXIV 6738 . T C 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.417;DP=418;Dels=0.00;FS=47.798;HaplotypeScore=166.3386;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=0;MQRankSum=-6.112;QD=0.50;ReadPosRankSum=-1.729;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:189,226:417:99:238,0,237 chrXIV 6739 . C A,T 548.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.054;DP=415;Dels=0.00;FS=148.444;HaplotypeScore=71.4506;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.29;MQ0=0;MQRankSum=0.988;QD=1.32;ReadPosRankSum=1.237;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/2:9,223,180:415:99:608,283,238,325,0,295 chrXIV 6743 . T G 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;DP=433;Dels=0.00;FS=167.088;HaplotypeScore=148.3218;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=3;MQRankSum=4.798;QD=0.43;ReadPosRankSum=5.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,174:433:99:216,0,268 chrXIV 6765 . C T 343.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.525;DP=385;Dels=0.00;FS=67.413;HaplotypeScore=65.5905;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=11;MQRankSum=5.306;QD=0.89;ReadPosRankSum=2.121;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:92,291:385:99:373,0,587 chrXIV 6781 . C T 341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.522;DP=317;Dels=0.00;FS=96.436;HaplotypeScore=47.3292;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=12;MQRankSum=6.232;QD=1.08;ReadPosRankSum=-4.262;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:94,223:317:99:371,0,585 chrXIV 6818 . A T 527.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.886;DP=234;Dels=0.00;FS=73.950;HaplotypeScore=72.5212;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=17;MQRankSum=-2.114;QD=2.25;ReadPosRankSum=5.646;SB=-3.510e+02 GT:AD:DP:GQ:PL 0/1:100,132:234:99:557,0,305 chrXIV 6844 . C T 1133 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.653;DP=204;Dels=0.00;FS=168.948;HaplotypeScore=28.2386;MLEAC=2;MLEAF=1.00;MQ=21.98;MQ0=12;MQRankSum=7.594;QD=5.55;ReadPosRankSum=4.299;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:60,142:204:99:1166,120,0 chrXIV 6848 . T C 1254 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.677;DP=227;Dels=0.00;FS=182.808;HaplotypeScore=23.1296;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=10;MQRankSum=7.298;QD=5.52;ReadPosRankSum=4.409;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:54,173:227:99:1287,129,0 chrXIV 6906 . G C 2909.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;DP=523;Dels=0.00;FS=37.663;HaplotypeScore=67.8414;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=0;MQRankSum=-10.453;QD=5.56;ReadPosRankSum=6.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:258,261:523:99:2939,0,2606 chrXIV 6912 . C G 2522.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.997;DP=537;Dels=0.00;FS=7.434;HaplotypeScore=64.9859;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=2;MQRankSum=-9.983;QD=4.70;ReadPosRankSum=12.352;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:305,227:537:99:2552,0,3400 chrXIV 6914 . G C 2599.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.366;DP=540;Dels=0.00;FS=9.624;HaplotypeScore=84.2354;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=3;MQRankSum=-9.231;QD=4.81;ReadPosRankSum=12.849;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:308,227:540:99:2629,0,3222 chrXIV 6924 . A G 2851.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.024;DP=537;Dels=0.00;FS=18.663;HaplotypeScore=59.5518;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=6;MQRankSum=-7.726;QD=5.31;ReadPosRankSum=7.019;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:270,266:537:99:2881,0,2961 chrXIV 6942 . C A 1734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.621;DP=568;Dels=0.00;FS=28.441;HaplotypeScore=85.1583;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=9;MQRankSum=12.544;QD=3.05;ReadPosRankSum=3.182;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:398,168:568:99:1764,0,3557 chrXIV 6952 . A G 1310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.052;DP=532;Dels=0.00;FS=43.928;HaplotypeScore=40.8929;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=15;MQRankSum=11.557;QD=2.46;ReadPosRankSum=5.781;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:403,127:532:99:1340,0,2830 chrXIV 6990 . C T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;DP=333;Dels=0.00;FS=64.753;HaplotypeScore=57.8919;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=20;MQRankSum=-3.447;QD=0.23;ReadPosRankSum=3.965;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:270,62:333:99:108,0,1337 chrXIV 7001 . T C 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DP=281;Dels=0.00;FS=113.916;HaplotypeScore=267.5820;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=19;MQRankSum=5.329;QD=0.52;ReadPosRankSum=-3.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,53:281:99:176,0,925 chrXIV 7004 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=269;Dels=0.00;FS=119.278;HaplotypeScore=343.8662;MLEAC=1;MLEAF=0.500;MQ=18.67;MQ0=18;MQRankSum=1.197;QD=0.16;ReadPosRankSum=4.336;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:170,98:268:74:74,0,645 chrXIV 7014 . A G 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043;DP=254;Dels=0.00;FS=17.544;HaplotypeScore=191.7446;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=15;MQRankSum=-2.377;QD=0.36;ReadPosRankSum=2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,44:254:99:122,0,557 chrXIV 7021 . A G 212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=230;Dels=0.00;FS=191.227;HaplotypeScore=185.1226;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=13;MQRankSum=5.330;QD=0.92;ReadPosRankSum=4.250;SB=-5.655e-03 GT:AD:DP:GQ:PL 0/1:176,54:230:99:242,0,720 chrXIV 7024 . C T 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.075;DP=213;Dels=0.00;FS=233.368;HaplotypeScore=172.2202;MLEAC=1;MLEAF=0.500;MQ=19.68;MQ0=13;MQRankSum=4.456;QD=0.62;ReadPosRankSum=4.606;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:151,54:213:99:161,0,805 chrXIV 7025 . T C 246.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;DP=212;Dels=0.00;FS=96.448;HaplotypeScore=141.9117;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=13;MQRankSum=2.693;QD=1.16;ReadPosRankSum=1.341;SB=-4.006e+00 GT:AD:DP:GQ:PL 0/1:121,89:212:99:276,0,718 chrXIV 7030 . T C 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;DP=201;Dels=0.00;FS=121.771;HaplotypeScore=88.4740;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=13;MQRankSum=2.995;QD=1.45;ReadPosRankSum=1.642;SB=0.128 GT:AD:DP:GQ:PL 0/1:113,88:201:99:322,0,788 chrXIV 7041 . T A 268.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DP=157;Dels=0.00;FS=44.247;HaplotypeScore=56.4704;MLEAC=1;MLEAF=0.500;MQ=20.88;MQ0=8;MQRankSum=1.334;QD=1.71;ReadPosRankSum=3.952;SB=-1.800e+01 GT:AD:DP:GQ:PL 0/1:64,92:157:99:298,0,583 chrXIV 7047 . C A 217.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;DP=128;Dels=0.00;FS=54.038;HaplotypeScore=72.5193;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=3;MQRankSum=-0.523;QD=1.70;ReadPosRankSum=2.423;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:40,88:128:99:247,0,489 chrXIV 7048 . G T 215.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.895;DP=124;Dels=0.00;FS=50.737;HaplotypeScore=70.9277;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=2;MQRankSum=-0.158;QD=1.73;ReadPosRankSum=2.900;SB=-7.017e+00 GT:AD:DP:GQ:PL 0/1:40,84:124:99:245,0,433 chrXIV 7050 . T C 135.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.402;DP=122;Dels=0.00;FS=121.871;HaplotypeScore=69.9445;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=2;MQRankSum=1.016;QD=1.11;ReadPosRankSum=2.441;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:36,49:122:99:165,0,407 chrXIV 7057 . T C 469.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DP=118;Dels=0.00;FS=3.814;HaplotypeScore=102.5090;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=0;MQRankSum=2.633;QD=3.98;ReadPosRankSum=4.418;SB=-2.892e+02 GT:AD:DP:GQ:PL 0/1:16,101:118:10:499,0,10 chrXIV 7080 . C T 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.557;DP=77;Dels=0.00;FS=37.445;HaplotypeScore=99.2871;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=0;MQRankSum=1.777;QD=1.92;ReadPosRankSum=1.847;SB=1.75 GT:AD:DP:GQ:PL 0/1:65,12:77:99:178,0,149 chrXIV 7088 . C G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DP=83;Dels=0.00;FS=28.816;HaplotypeScore=132.5312;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=0;MQRankSum=-5.410;QD=0.25;ReadPosRankSum=3.074;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:37,46:83:51:51,0,297 chrXIV 7114 . A G 802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.244;DP=145;Dels=0.00;FS=47.718;HaplotypeScore=91.1605;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=3;MQRankSum=-0.415;QD=5.53;ReadPosRankSum=3.538;SB=-4.579e+02 GT:AD:DP:GQ:PL 1/1:23,118:145:68:835,68,0 chrXIV 7155 . C T 1432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DP=263;Dels=0.00;FS=5.300;HaplotypeScore=100.3679;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=36;MQRankSum=1.191;QD=5.44;ReadPosRankSum=2.724;SB=-8.720e+02 GT:AD:DP:GQ:PL 0/1:66,196:263:99:1462,0,217 chrXIV 7161 . C T 357.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DP=298;Dels=0.00;FS=27.046;HaplotypeScore=133.9611;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=49;MQRankSum=3.190;QD=1.20;ReadPosRankSum=-0.136;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:247,51:298:99:387,0,1363 chrXIV 7209 . C G 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.229;DP=304;Dels=0.00;FS=3.796;HaplotypeScore=81.9562;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=90;MQRankSum=-0.197;QD=0.66;ReadPosRankSum=1.013;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:223,79:304:99:231,0,1837 chrXIV 7298 . C T 711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.624;DP=152;Dels=0.00;FS=89.827;HaplotypeScore=19.0171;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=5;MQRankSum=4.595;QD=4.68;ReadPosRankSum=-1.646;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:101,50:152:99:741,0,779 chrXIV 7345 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DP=219;Dels=0.00;FS=65.618;HaplotypeScore=14.7891;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=83;MQRankSum=2.974;QD=0.12;ReadPosRankSum=-2.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:205,12:219:56:56,0,1170 chrXIV 7346 . C T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=220;Dels=0.00;FS=25.731;HaplotypeScore=14.0551;MLEAC=1;MLEAF=0.500;MQ=16.02;MQ0=83;MQRankSum=2.101;QD=0.24;ReadPosRankSum=-1.545;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,25:220:83:83,0,1180 chrXIV 7522 . T C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=23;MQRankSum=1.012;QD=3.38;ReadPosRankSum=-3.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,17:50:88:199,0,88 chrXIV 7523 . A G 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=23;MQRankSum=0.814;QD=3.58;ReadPosRankSum=-3.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,17:50:88:209,0,88 chrXIV 7536 . A G 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=16.66;MQ0=29;MQRankSum=2.246;QD=4.06;ReadPosRankSum=-3.976;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:39,24:64:79:290,0,79 chrXIV 7541 . C T 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=17.53;MQ0=28;MQRankSum=3.122;QD=5.26;ReadPosRankSum=-3.830;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:39,27:66:70:377,0,70 chrXIV 7547 . T C 315.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.90;MQ0=34;MQRankSum=1.986;QD=4.20;ReadPosRankSum=-2.486;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:45,30:75:70:345,0,70 chrXIV 7553 . A G 325.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.54;MQ0=36;MQRankSum=2.277;QD=4.06;ReadPosRankSum=-0.678;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:46,33:80:70:355,0,70 chrXIV 7557 . C T 313.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.75;MQ0=40;MQRankSum=2.500;QD=3.60;ReadPosRankSum=0.188;SB=-6.302e-03 GT:AD:DP:GQ:PL 0/1:50,37:87:70:343,0,70 chrXIV 7564 . T C 446.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.00;MQ0=46;MQRankSum=2.083;QD=4.46;ReadPosRankSum=0.816;SB=3.386e-04 GT:AD:DP:GQ:PL 0/1:55,45:100:58:476,0,58 chrXIV 7567 . T C 414.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=17.02;MQ0=49;MQRankSum=2.598;QD=3.87;ReadPosRankSum=0.992;SB=7.157e-03 GT:AD:DP:GQ:PL 0/1:58,49:107:58:444,0,58 chrXIV 7611 . T A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DP=110;Dels=0.00;FS=83.653;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=17.09;MQ0=54;MQRankSum=2.750;QD=0.60;ReadPosRankSum=-2.552;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:87,23:110:96:96,0,346 chrXIV 7622 . G A 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.932;DP=111;Dels=0.00;FS=156.317;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=48;MQRankSum=-4.382;QD=1.81;ReadPosRankSum=4.168;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:57,54:111:99:231,0,324 chrXIV 7628 . G C 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;DP=112;Dels=0.00;FS=178.140;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=46;MQRankSum=-5.427;QD=1.36;ReadPosRankSum=3.580;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:59,52:112:99:182,0,517 chrXIV 7631 . G C 116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.882;DP=121;Dels=0.00;FS=202.725;HaplotypeScore=11.9657;MLEAC=1;MLEAF=0.500;MQ=20.23;MQ0=47;MQRankSum=-5.782;QD=0.96;ReadPosRankSum=4.248;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:66,52:121:99:146,0,623 chrXIV 7639 . C T 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;DP=118;Dels=0.00;FS=183.384;HaplotypeScore=9.7989;MLEAC=1;MLEAF=0.500;MQ=20.92;MQ0=44;MQRankSum=-5.218;QD=0.56;ReadPosRankSum=1.184;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:68,50:118:96:96,0,938 chrXIV 7686 . A G 2992 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=132;Dels=0.00;FS=118.030;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=16;MQRankSum=3.917;QD=22.67;ReadPosRankSum=3.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:20,112:132:99:3025,249,0 chrXIV 7722 . A G 2325 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=3;QD=24.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2358,258,0 chrXIV 7870 . A T 5438.01 filter AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=16;QD=23.85;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:13,215:228:99:5438,538,0 chrXIV 7967 . A G 479 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=11.51;MQ0=155;MQRankSum=-1.595;QD=2.66;ReadPosRankSum=1.595;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:64,114:180:51:512,51,0 chrXIV 8013 . C G 1517 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.57;MQ0=151;QD=7.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:89,124:215:99:1550,153,0 chrXIV 8027 . A G 1789 filter AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=128;QD=8.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:79,129:208:99:1822,189,0 chrXIV 8054 . T C 1863 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.700;DP=219;Dels=0.00;FS=19.731;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=123;MQRankSum=1.658;QD=8.51;ReadPosRankSum=-0.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:93,124:219:99:1896,210,0 chrXIV 8078 . T G 1626 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.147;DP=224;Dels=0.00;FS=18.865;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=145;MQRankSum=1.642;QD=7.26;ReadPosRankSum=1.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:139,83:224:99:1659,171,0 chrXIV 8088 . G A 1463 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=158;QD=6.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:154,69:224:99:1496,147,0 chrXIV 8090 . T C 1433 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=226;Dels=0.00;FS=17.993;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=163;MQRankSum=1.677;QD=6.34;ReadPosRankSum=1.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:161,65:226:99:1466,147,0 chrXIV 8099 . T G 928 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=224;Dels=0.00;FS=54.325;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.43;MQ0=172;MQRankSum=3.279;QD=4.14;ReadPosRankSum=3.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:175,49:224:99:961,108,0 chrXIV 8100 . G A 931 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.073;DP=224;Dels=0.00;FS=54.325;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.43;MQ0=172;MQRankSum=3.279;QD=4.16;ReadPosRankSum=2.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:176,48:224:99:964,108,0 chrXIV 8102 . C T 1097 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.073;DP=224;Dels=0.00;FS=54.325;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.43;MQ0=172;MQRankSum=3.279;QD=4.90;ReadPosRankSum=1.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:173,51:224:99:1130,111,0 chrXIV 8108 . A C 922 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DP=235;Dels=0.00;FS=64.148;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.98;MQ0=183;MQRankSum=3.632;QD=3.92;ReadPosRankSum=1.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:188,47:235:99:955,102,0 chrXIV 8112 . A G 684 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=227;Dels=0.00;FS=58.078;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.40;MQ0=186;MQRankSum=3.344;QD=3.01;ReadPosRankSum=2.131;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:192,34:227:72:717,72,0 chrXIV 8114 . C T 687 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DP=229;Dels=0.00;FS=65.841;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.18;MQ0=189;MQRankSum=3.845;QD=3.00;ReadPosRankSum=1.080;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:195,34:229:72:720,72,0 chrXIV 8131 . G A 331 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.019;DP=240;Dels=0.00;FS=59.484;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.39;MQ0=213;MQRankSum=3.845;QD=1.38;ReadPosRankSum=-2.351;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:217,23:240:39:364,39,0 chrXIV 8147 . T A 144.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.694;DP=239;Dels=0.00;FS=40.584;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.65;MQ0=223;MQRankSum=3.281;QD=0.60;ReadPosRankSum=-2.223;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:219,20:239:18:177,18,0 chrXIV 8154 . C T 86.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=236;Dels=0.00;FS=32.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.65;MQ0=223;MQRankSum=3.016;QD=0.37;ReadPosRankSum=-2.074;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:216,19:236:12:119,12,0 chrXIV 8156 . T C 84.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.555;DP=234;Dels=0.00;FS=32.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.67;MQ0=221;MQRankSum=3.016;QD=0.36;ReadPosRankSum=-2.074;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:216,17:234:12:117,12,0 chrXIV 8754 . A G 671 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=20.22;MQ0=11;MQRankSum=-1.509;QD=7.46;ReadPosRankSum=3.343;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,86:90:75:704,75,0 chrXIV 8815 . A C 231.01 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=12;QD=10.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:27:264,27,0 chrXIV 8818 . T C 225.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=12;MQRankSum=0.869;QD=9.00;ReadPosRankSum=1.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,22:25:27:258,27,0 chrXIV 8941 . G A 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=0;QD=3.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:60,6,0 chrXIV 8986 . A G 208.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=1;QD=13.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:24:241,24,0 chrXIV 9650 . C T 92.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=26;MQRankSum=2.041;QD=2.43;ReadPosRankSum=1.611;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:24,14:38:12:125,12,0 chrXIV 9655 . A T 85.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.93;MQ0=20;QD=2.44;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:118,12,0 chrXIV 9656 . G A 83.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=20;MQRankSum=2.807;QD=2.32;ReadPosRankSum=2.285;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:21,15:36:12:116,12,0 chrXIV 9662 . G A 85.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=31;QD=1.55;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,54:55:12:118,12,0 chrXIV 9739 . A G 1366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.324;DP=227;Dels=0.00;FS=47.289;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=75;MQRankSum=4.072;QD=6.02;ReadPosRankSum=-0.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,76:227:99:1396,0,808 chrXIV 9913 . T C 5345.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=257;Dels=0.00;FS=4.061;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=15;MQRankSum=-1.689;QD=20.80;ReadPosRankSum=1.703;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5345,547,0 chrXIV 9970 . C T 4093.01 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=23;QD=21.32;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,185:192:99:4093,421,0 chrXIV 10004 . C T 2293 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=44;QD=14.99;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2326,243,0 chrXIV 10105 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.658;DP=131;Dels=0.00;FS=2.280;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.234;QD=22.62;ReadPosRankSum=3.670;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:5,126:131:99:2996,312,0 chrXIV 11195 . C T 1148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;DP=175;Dels=0.00;FS=13.217;HaplotypeScore=10.1434;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=16;MQRankSum=1.175;QD=6.56;ReadPosRankSum=-0.848;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:79,94:175:99:1178,0,867 chrXIV 11518 . C T 266 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.10;MQ0=107;QD=2.24;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:70,49:119:33:299,33,0 chrXIV 13008 . G A 540.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;DP=136;Dels=0.00;FS=13.329;HaplotypeScore=8.6186;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=30;MQRankSum=0.066;QD=3.97;ReadPosRankSum=-0.541;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:65,71:136:99:570,0,579 chrXIV 14398 . A T 47.97 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.14;MQ0=57;QD=0.74;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,65:65:9:80,9,0 chrXIV 15955 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=2;QD=19.44;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1141,111,0 chrXIV 15990 . T C 2304 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=20.57;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2337,225,0 chrXIV 15992 . G C 2308 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=20.07;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2341,231,0 chrXIV 16090 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=21.92;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2313,234,0 chrXIV 16112 . C A 1993 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=21.66;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2026,201,0 chrXIV 16225 . G T 2437 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=24.37;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2470,255,0 chrXIV 16321 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=1;MQRankSum=0.723;QD=25.64;ReadPosRankSum=1.712;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4513,448,0 chrXIV 16385 . T A 2250 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=1;QD=15.52;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2283,225,0 chrXIV 16410 . G T 1713 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=14.39;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1746,168,0 chrXIV 16421 . G A 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=114;Dels=0.00;FS=3.049;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;MQRankSum=0.751;QD=14.52;ReadPosRankSum=-1.732;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1688,171,0 chrXIV 16445 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=131;Dels=0.00;FS=10.294;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=0.146;QD=18.81;ReadPosRankSum=2.916;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2497,249,0 chrXIV 16538 . G A 3345.01 filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.1993;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=5;QD=15.27;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:3345,354,0 chrXIV 16550 . G A 2550 filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0237;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=5;QD=13.21;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2583,255,0 chrXIV 16553 . T A 2446 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.4453;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=5;QD=13.08;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2479,252,0 chrXIV 16586 . A G 610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.00;FS=3.027;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=3;MQRankSum=-2.073;QD=4.80;ReadPosRankSum=2.410;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:72:643,72,0 chrXIV 16595 . C T 127.13 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.99;MQ0=3;QD=1.34;SB=-2.914e+01 GT:AD:DP:GQ:PL 1/1:0,94:95:18:160,18,0 chrXIV 16636 . C T 752 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=1;QD=12.75;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:84:785,84,0 chrXIV 16637 . G A 807 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=1;QD=13.45;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:87:840,87,0 chrXIV 16643 . A G 948 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DP=75;Dels=0.00;FS=7.995;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=1;MQRankSum=1.504;QD=12.64;ReadPosRankSum=1.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,72:75:96:981,96,0 chrXIV 16664 . A G 1811 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.746;DP=109;Dels=0.00;FS=21.725;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=5;MQRankSum=1.550;QD=16.61;ReadPosRankSum=0.201;SB=-1.401e+01 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1844,189,0 chrXIV 16724 . G A 1915 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.026;DP=159;Dels=0.00;FS=6.172;HaplotypeScore=9.8146;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=19;MQRankSum=-0.711;QD=12.04;ReadPosRankSum=1.519;SB=-1.701e+01 GT:AD:DP:GQ:PL 1/1:2,157:159:99:1948,213,0 chrXIV 16733 . C T 1910 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=147;Dels=0.00;FS=8.416;HaplotypeScore=5.0647;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=21;MQRankSum=0.568;QD=12.99;ReadPosRankSum=1.289;SB=-1.701e+01 GT:AD:DP:GQ:PL 1/1:1,145:147:99:1943,198,0 chrXIV 16801 . T C 183.03 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=8;QD=6.54;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:216,24,0 chrXIV 16886 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.71;MQ0=16;QD=0.63;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:6:52,6,0 chrXIV 17165 . C T 190.03 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=10;QD=2.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:24:223,24,0 chrXIV 17207 . T C 797 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0751;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=10;MQRankSum=-0.692;QD=10.35;ReadPosRankSum=2.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,74:77:87:830,87,0 chrXIV 17244 . G T 1239 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=98.9738;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=6;QD=10.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1272,123,0 chrXIV 17342 . A G 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=7.7306;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;MQRankSum=0.725;QD=13.32;ReadPosRankSum=1.703;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1592,162,0 chrXIV 17370 . T A 1376 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=16.78;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1409,138,0 chrXIV 17387 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.367;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-0.274;QD=15.91;ReadPosRankSum=1.687;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1258,129,0 chrXIV 17474 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=24.30;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2828,285,0 chrXIV 17552 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3436;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.058;QD=25.02;ReadPosRankSum=1.693;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2260,225,0 chrXIV 17591 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4920;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=20.62;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1703,174,0 chrXIV 17598 . G C 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=19.68;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:77:99:1548,162,0 chrXIV 17628 . T A 1498 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.04;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.72;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1531,162,0 chrXIV 17657 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=19.74;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1652,168,0 chrXIV 17694 . G A 114.26 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=113.4448;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=1.63;SB=-9.803e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:15:147,15,0 chrXIV 17773 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7759;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.18;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2024,213,0 chrXIV 17835 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=26.37;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2538,252,0 chrXIV 17899 . C A 1843 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=22.20;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1876,183,0 chrXIV 17901 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=22.69;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1871,183,0 chrXIV 17924 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.88;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2121,210,0 chrXIV 18046 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.461;QD=25.61;ReadPosRankSum=2.376;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4302,433,0 chrXIV 18355 . T C 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=222;Dels=0.00;FS=5.639;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.179;QD=25.76;ReadPosRankSum=2.950;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:5719,574,0 chrXIV 18574 . G A 5450.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.3154;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.35;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:5450,538,0 chrXIV 18787 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3833,379,0 chrXIV 18838 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.0258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3160,316,0 chrXIV 19036 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3797,402,0 chrXIV 19321 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.31;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3389,340,0 chrXIV 19440 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9731;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.887;QD=26.82;ReadPosRankSum=1.704;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3326,343,0 chrXIV 19517 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.64;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2392,234,0 chrXIV 19520 . T A 2396 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=21.98;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2429,240,0 chrXIV 19703 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.363;QD=24.25;ReadPosRankSum=1.691;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4122,415,0 chrXIV 19713 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.72;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4090,409,0 chrXIV 19742 . T C 4294.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.99;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4294,433,0 chrXIV 19886 . A C 4359.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8668;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.49;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4359,448,0 chrXIV 19934 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.21;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4265,445,0 chrXIV 19955 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.86;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3852,385,0 chrXIV 19960 . G T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.92;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3925,388,0 chrXIV 20018 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.76;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3972,412,0 chrXIV 20045 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.61;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3710,382,0 chrXIV 20114 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.91;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3247,331,0 chrXIV 20228 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.60;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3800,391,0 chrXIV 20303 . A T 2760 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.04;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2793,277,0 chrXIV 20559 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3486;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.25;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4049,409,0 chrXIV 20711 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.196;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.359;QD=25.72;ReadPosRankSum=1.691;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4296,436,0 chrXIV 20915 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.14;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2930,289,0 chrXIV 20936 . G T 3053 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.81;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3086,313,0 chrXIV 21401 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.39;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3853,394,0 chrXIV 21526 . C G 2971 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.2431;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.58;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3004,309,0 chrXIV 21612 . T C 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=6.335;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.485;QD=23.05;ReadPosRankSum=2.400;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2338,234,0 chrXIV 21635 . T G 2542 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.50;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2575,270,0 chrXIV 21701 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=154;Dels=0.00;FS=5.564;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.268;QD=25.74;ReadPosRankSum=2.876;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3964,397,0 chrXIV 21836 . A C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.68;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4002,418,0 chrXIV 21949 . T C 3170 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=20.99;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3203,336,0 chrXIV 21953 . A G 3195 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.88;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3228,328,0 chrXIV 21965 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1658;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.755;QD=21.47;ReadPosRankSum=1.710;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3349,334,0 chrXIV 22021 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=180;Dels=0.00;FS=10.942;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.926;QD=21.74;ReadPosRankSum=2.938;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:3914,394,0 chrXIV 22090 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.84;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3252,339,0 chrXIV 22825 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.08;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3486,358,0 chrXIV 22855 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.242;HaplotypeScore=11.3294;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.360;QD=23.88;ReadPosRankSum=1.710;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3749,393,0 chrXIV 22918 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.56;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3856,394,0 chrXIV 23134 . C G 3074 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.12;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3107,327,0 chrXIV 23219 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=26.90;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4196,418,0 chrXIV 23451 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=24.56;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3905,385,0 chrXIV 23459 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.92;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3755,367,0 chrXIV 23495 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.00;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3404,340,0 chrXIV 23592 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.81;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2934,295,0 chrXIV 23613 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=14.0047;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.28;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3283,325,0 chrXIV 23884 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=0.175;QD=24.32;ReadPosRankSum=1.652;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3170,313,0 chrXIV 23905 . T A 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=136;Dels=0.00;FS=6.862;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.353;QD=22.00;ReadPosRankSum=2.377;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3025,318,0 chrXIV 24043 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=18.18;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2196,216,0 chrXIV 24081 . A T 3065 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=24.52;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3098,307,0 chrXIV 24221 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=27.35;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3719,373,0 chrXIV 24263 . T A 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.705;QD=25.11;ReadPosRankSum=1.684;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3641,361,0 chrXIV 24285 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=20.21;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2963,298,0 chrXIV 24290 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=19.56;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2987,298,0 chrXIV 24336 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.21;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2692,265,0 chrXIV 24346 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.56;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2492,246,0 chrXIV 24416 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=6.712;HaplotypeScore=10.8127;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.041;QD=23.92;ReadPosRankSum=2.390;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3971,412,0 chrXIV 24447 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=25.91;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3939,391,0 chrXIV 24467 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=24.54;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3976,400,0 chrXIV 24509 . T A 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=168;Dels=0.00;FS=2.980;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.302;QD=23.40;ReadPosRankSum=2.317;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3931,406,0 chrXIV 24575 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.228;QD=24.26;ReadPosRankSum=1.710;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3955,412,0 chrXIV 24616 . G T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.35;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3620,364,0 chrXIV 24641 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.21;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3576,355,0 chrXIV 24809 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=182;Dels=0.00;FS=5.255;HaplotypeScore=22.2235;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.848;QD=25.06;ReadPosRankSum=3.402;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:4561,475,0 chrXIV 24857 . G T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.95;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5267,517,0 chrXIV 24910 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=24.19;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4451,448,0 chrXIV 25123 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=22.48;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4113,409,0 chrXIV 25137 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=19.74;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3632,381,0 chrXIV 25142 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=4.926;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=-0.942;QD=19.55;ReadPosRankSum=1.712;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3343,348,0 chrXIV 25157 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=18.17;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2940,300,0 chrXIV 25167 . A T 2925 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=18.51;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2958,295,0 chrXIV 25197 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.869;QD=19.33;ReadPosRankSum=2.418;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3087,313,0 chrXIV 25340 . C T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=25.79;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4874,490,0 chrXIV 25369 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.808;DP=191;Dels=0.00;FS=4.873;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.406;QD=20.73;ReadPosRankSum=3.783;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:5,186:191:99:3960,409,0 chrXIV 25389 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.57;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3913,408,0 chrXIV 25410 . A C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=226;Dels=0.00;FS=9.127;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.584;QD=17.92;ReadPosRankSum=2.406;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4049,418,0 chrXIV 25427 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=263;Dels=0.00;FS=4.013;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=1.462;QD=15.51;ReadPosRankSum=1.719;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:1,257:263:99:4080,418,0 chrXIV 25436 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=16.68;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:4421,457,0 chrXIV 25528 . T C 6216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=259;Dels=0.00;FS=3.018;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.099;QD=24.00;ReadPosRankSum=2.392;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:6216,631,0 chrXIV 25651 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.9051;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.61;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:4054,427,0 chrXIV 25739 . G T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.5445;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.90;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5055,496,0 chrXIV 25764 . G T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.4839;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.96;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4744,466,0 chrXIV 25800 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.49;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4360,430,0 chrXIV 25936 . C T 6340.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.2853;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.56;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6340,640,0 chrXIV 26041 . A T 7136.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.7925;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.86;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:7136,694,0 chrXIV 26085 . T C 6698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.751;QD=23.26;ReadPosRankSum=1.720;SB=-3.767e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6698,670,0 chrXIV 26102 . C T 6974.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.79;SB=-4.159e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:6974,703,0 chrXIV 26378 . T C 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=242;Dels=0.00;FS=10.165;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=2.779;QD=23.79;ReadPosRankSum=2.929;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:5758,598,0 chrXIV 26408 . G A 6374.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.02;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6374,634,0 chrXIV 26480 . C T 5929.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.5009;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.30;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5929,595,0 chrXIV 26624 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.7989;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.23;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4567,469,0 chrXIV 26669 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=110;Dels=0.00;FS=6.071;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-1.193;QD=20.28;ReadPosRankSum=2.936;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2264,234,0 chrXIV 26675 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=19.35;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2065,216,0 chrXIV 26681 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.86;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1972,204,0 chrXIV 26744 . G T 3833.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;DP=255;Dels=0.00;FS=6.366;HaplotypeScore=16.5076;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=-2.630;QD=15.03;ReadPosRankSum=5.895;SB=-2.421e+03 GT:AD:DP:GQ:PL 0/1:56,199:255:99:3833,0,716 chrXIV 26783 . G A 4270.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.663;DP=324;Dels=0.00;FS=4.660;HaplotypeScore=10.0887;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-3.080;QD=13.18;ReadPosRankSum=-6.266;SB=-2.315e+03 GT:AD:DP:GQ:PL 0/1:105,219:324:99:4270,0,1797 chrXIV 26789 . T C 1812.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=330;Dels=0.00;FS=3.927;HaplotypeScore=13.2434;MLEAC=1;MLEAF=0.500;MQ=56.33;MQ0=0;MQRankSum=1.976;QD=5.49;ReadPosRankSum=7.356;SB=-7.810e+02 GT:AD:DP:GQ:PL 0/1:225,105:330:99:1842,0,4256 chrXIV 26953 . T C 5828.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=22.3194;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.01;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5828,592,0 chrXIV 27283 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.04;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1309,132,0 chrXIV 27309 . G T 1723 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=29.20;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1756,171,0 chrXIV 27347 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.080;QD=26.00;ReadPosRankSum=1.682;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1827,186,0 chrXIV 27364 . C A 1634 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.94;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1667,162,0 chrXIV 27513 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=170;Dels=0.00;FS=9.543;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.684;QD=25.12;ReadPosRankSum=2.405;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:4271,445,0 chrXIV 27622 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=177;Dels=0.00;FS=11.125;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.873;QD=20.80;ReadPosRankSum=3.740;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:5,171:177:99:3682,381,0 chrXIV 27635 . T A 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=183;Dels=0.00;FS=5.771;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.929;QD=21.83;ReadPosRankSum=2.940;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3994,403,0 chrXIV 27814 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=183;Dels=0.00;FS=7.990;HaplotypeScore=9.5221;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.234;QD=23.36;ReadPosRankSum=3.317;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:4275,442,0 chrXIV 27917 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.11;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3942,385,0 chrXIV 28026 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.68;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3724,367,0 chrXIV 28085 . T G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.37;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3680,376,0 chrXIV 28335 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.5291;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.79;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2909,297,0 chrXIV 28353 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.83;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2429,243,0 chrXIV 28602 . T A 1756 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=26.21;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1789,177,0 chrXIV 28617 . T C 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.713;QD=26.04;ReadPosRankSum=1.681;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1804,180,0 chrXIV 28660 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=19.60;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1268,129,0 chrXIV 28675 . T A 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=18.02;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1096,111,0 chrXIV 28680 . A T 837 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=15.50;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:870,90,0 chrXIV 28682 . C A 796 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=14.47;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:829,84,0 chrXIV 28686 . T C 914 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=3.409;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;MQRankSum=-1.550;QD=15.76;ReadPosRankSum=1.672;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:96:947,96,0 chrXIV 28703 . C A 1081 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=17.16;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1114,111,0 chrXIV 28799 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.53;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4272,445,0 chrXIV 28847 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=27.33;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4454,469,0 chrXIV 29291 . C A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.77;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4161,412,0 chrXIV 29320 . A C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.213;QD=23.71;ReadPosRankSum=1.608;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3960,406,0 chrXIV 29515 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=26.42;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3672,370,0 chrXIV 29547 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.440;QD=25.15;ReadPosRankSum=1.705;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3202,325,0 chrXIV 29555 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.44;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3080,307,0 chrXIV 29633 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.010;QD=26.03;ReadPosRankSum=1.712;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4503,442,0 chrXIV 29975 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=173;Dels=0.00;FS=8.570;HaplotypeScore=8.1125;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.015;QD=20.66;ReadPosRankSum=3.227;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:3575,370,0 chrXIV 29984 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.70;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3117,330,0 chrXIV 30413 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.70;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3855,385,0 chrXIV 30527 . A T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.63;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3844,385,0 chrXIV 30578 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3341,328,0 chrXIV 30802 . G T 2599 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2632,259,0 chrXIV 31190 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=186;Dels=0.00;FS=2.921;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.720;QD=25.23;ReadPosRankSum=2.410;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4693,484,0 chrXIV 31429 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.14;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3022,310,0 chrXIV 31443 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=11.265;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.835;QD=20.45;ReadPosRankSum=2.340;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2794,282,0 chrXIV 31516 . G T 2042 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=19.26;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2075,219,0 chrXIV 31519 . C T 2123 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=20.22;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2156,222,0 chrXIV 31526 . A G 1824 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;MQRankSum=-1.732;QD=19.61;ReadPosRankSum=1.695;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1857,201,0 chrXIV 31527 . C A 1873 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=20.36;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1906,201,0 chrXIV 31542 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=2.602;HaplotypeScore=41.6483;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=-1.422;QD=15.21;ReadPosRankSum=2.244;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1128,123,0 chrXIV 31657 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.57;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3098,333,0 chrXIV 31666 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=12.5654;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=0.401;QD=19.45;ReadPosRankSum=2.301;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2620,270,0 chrXIV 31693 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=12.79;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1261,135,0 chrXIV 31702 . A G 907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.873;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.652;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:940,102,0 chrXIV 31722 . A T 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.191;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.072;QD=9.95;ReadPosRankSum=1.691;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:96:869,96,0 chrXIV 31748 . T C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=7.440;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-2.002;QD=17.26;ReadPosRankSum=2.383;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1932,198,0 chrXIV 31770 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.54;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2950,297,0 chrXIV 31774 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=21.27;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3159,310,0 chrXIV 31994 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.07;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2801,282,0 chrXIV 32015 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=24.54;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3051,301,0 chrXIV 32112 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4602,481,0 chrXIV 32285 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.270;QD=23.52;ReadPosRankSum=1.648;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3928,414,0 chrXIV 32330 . A C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.931;QD=23.02;ReadPosRankSum=1.710;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3683,373,0 chrXIV 33086 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.481;QD=19.80;ReadPosRankSum=1.682;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1399,141,0 chrXIV 33272 . G A 661 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.32;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:72:694,72,0 chrXIV 33359 . G A 2803 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2836,277,0 chrXIV 33540 . A G 8712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=335;Dels=0.00;FS=4.771;HaplotypeScore=14.9077;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.442;QD=26.01;ReadPosRankSum=1.680;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:1,333:335:99:8712,895,0 chrXIV 33602 . T C 9062.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=363;Dels=0.00;FS=5.841;HaplotypeScore=20.8488;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.124;QD=24.96;ReadPosRankSum=2.953;SB=-4.325e+03 GT:AD:DP:GQ:PL 1/1:3,360:363:99:9062,937,0 chrXIV 33651 . T C 8375.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=20.6466;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.93;SB=-4.528e+03 GT:AD:DP:GQ:PL 1/1:0,334:336:99:8375,856,0 chrXIV 33735 . G C 9793.01 filter AC=2;AF=1.00;AN=2;DP=419;Dels=0.00;FS=0.000;HaplotypeScore=19.5806;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.37;SB=-5.171e+03 GT:AD:DP:GQ:PL 1/1:0,414:419:99:9793,1012,0 chrXIV 33946 . G C 8519.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=31.7979;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.06;SB=-4.087e+03 GT:AD:DP:GQ:PL 1/1:0,352:354:99:8519,862,0 chrXIV 34054 . G A 7241.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=21.9253;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.95;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:7241,709,0 chrXIV 34134 . C T 4626.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.0241;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.03;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4626,475,0 chrXIV 34193 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7168;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.44;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3519,346,0 chrXIV 34497 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.93;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:33:326,33,0 chrXIV 34590 . G A 1228 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1261,123,0 chrXIV 34650 . T A 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.731;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2353;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.577;QD=17.82;ReadPosRankSum=3.731;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:5,83:88:99:1601,165,0 chrXIV 34651 . A G 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2353;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.170;QD=18.01;ReadPosRankSum=3.335;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1618,168,0 chrXIV 35550 . A G 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=3.026;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.700;QD=25.40;ReadPosRankSum=2.372;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4826,487,0 chrXIV 35786 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.9721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.78;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3964,412,0 chrXIV 36225 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.0931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3517,364,0 chrXIV 36273 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.85;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3839,397,0 chrXIV 36441 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.28;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:4330,451,0 chrXIV 36607 . A G 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=204;Dels=0.00;FS=8.412;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.760;QD=24.44;ReadPosRankSum=2.401;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4985,514,0 chrXIV 36738 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=259;Dels=0.00;FS=2.939;HaplotypeScore=6.2329;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.331;QD=20.43;ReadPosRankSum=2.393;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:2,257:259:99:5291,532,0 chrXIV 36744 . T C 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=270;Dels=0.00;FS=2.906;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.388;QD=18.38;ReadPosRankSum=2.413;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:2,267:270:99:4963,520,0 chrXIV 36849 . T A 6889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=3.627;HaplotypeScore=19.2232;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.446;QD=25.33;ReadPosRankSum=1.694;SB=-3.310e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:6889,697,0 chrXIV 37063 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=177;Dels=0.00;FS=2.739;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.868;QD=23.58;ReadPosRankSum=2.421;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:4173,418,0 chrXIV 37484 . G C 1839 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.43;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1872,189,0 chrXIV 37492 . T A 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.57;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1780,183,0 chrXIV 37528 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.92;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2090,216,0 chrXIV 37676 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=161;Dels=0.00;FS=5.679;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.163;QD=25.49;ReadPosRankSum=1.710;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:4104,427,0 chrXIV 37855 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4535,442,0 chrXIV 37986 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=6.985;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.346;QD=24.54;ReadPosRankSum=2.361;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:4122,421,0 chrXIV 38125 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.31;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3304,328,0 chrXIV 38446 . G C 2099 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.60;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2132,216,0 chrXIV 38764 . A T 3132 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.00;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3165,322,0 chrXIV 38851 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.230;QD=26.22;ReadPosRankSum=0.160;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:3075,316,0 chrXIV 39122 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=117;Dels=0.00;FS=2.863;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.792;QD=25.84;ReadPosRankSum=2.407;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:3056,321,0 chrXIV 39235 . C A 2450 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.16;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2483,246,0 chrXIV 39282 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3160,313,0 chrXIV 39538 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2707;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.603;QD=25.66;ReadPosRankSum=1.706;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3438,352,0 chrXIV 39847 . G T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3957,388,0 chrXIV 40035 . T G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.98;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:4101,412,0 chrXIV 40397 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.43;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2142,219,0 chrXIV 40439 . G A 1979 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.28;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2012,204,0 chrXIV 40607 . C A 2448 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.48;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2481,249,0 chrXIV 40627 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.14;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2899,289,0 chrXIV 40663 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.141;QD=25.28;ReadPosRankSum=1.629;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3438,346,0 chrXIV 40774 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.49;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4308,424,0 chrXIV 40852 . A C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=200;Dels=0.00;FS=6.595;HaplotypeScore=7.4672;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.507;QD=23.85;ReadPosRankSum=2.111;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:2,194:200:99:4769,479,0 chrXIV 40912 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.09;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4529,460,0 chrXIV 40918 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.247;HaplotypeScore=6.7184;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.778;QD=21.41;ReadPosRankSum=1.682;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4454,442,0 chrXIV 41218 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4565,448,0 chrXIV 41680 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.80;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4365,433,0 chrXIV 42031 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2183,216,0 chrXIV 42185 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.30;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2453,246,0 chrXIV 42360 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.428;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.614;QD=25.42;ReadPosRankSum=1.688;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4016,421,0 chrXIV 42594 . A T 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=186;Dels=0.00;FS=2.983;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.614;QD=22.98;ReadPosRankSum=2.357;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4275,418,0 chrXIV 42611 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.7778;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.030;QD=22.21;ReadPosRankSum=1.592;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3865,388,0 chrXIV 42639 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.40;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3830,391,0 chrXIV 43068 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=21.01;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1924,216,0 chrXIV 43069 . T G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=-0.955;QD=20.97;ReadPosRankSum=1.592;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1920,216,0 chrXIV 43099 . A T 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=-0.228;QD=24.11;ReadPosRankSum=1.687;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1865,189,0 chrXIV 43100 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=23.01;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1759,186,0 chrXIV 43141 . G A 1154 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1187,120,0 chrXIV 43155 . T C 1002 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1035,102,0 chrXIV 43402 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.15;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3048,292,0 chrXIV 43654 . T C 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=230;Dels=0.00;FS=2.999;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.102;QD=24.28;ReadPosRankSum=2.417;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5584,562,0 chrXIV 43810 . A G 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=209;Dels=0.00;FS=2.577;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.293;QD=25.00;ReadPosRankSum=2.918;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:5224,538,0 chrXIV 43912 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3365,345,0 chrXIV 44216 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3410;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.60;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2813,280,0 chrXIV 44253 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=17.71;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2123,216,0 chrXIV 44256 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=18.29;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2210,225,0 chrXIV 44273 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.34;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2173,216,0 chrXIV 44284 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.732;QD=16.28;ReadPosRankSum=1.707;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2312,243,0 chrXIV 44757 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.665;HaplotypeScore=18.0713;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.156;QD=22.39;ReadPosRankSum=1.663;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4501,472,0 chrXIV 44956 . G A 4356.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.20;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4356,430,0 chrXIV 45224 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.586;QD=24.28;ReadPosRankSum=1.659;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:3520,355,0 chrXIV 45301 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=26.91;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3848,382,0 chrXIV 45407 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=142;Dels=0.00;FS=3.201;HaplotypeScore=11.2243;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.990;QD=24.38;ReadPosRankSum=1.633;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3462,346,0 chrXIV 45479 . G T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.61;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4500,445,0 chrXIV 45497 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.44;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3967,418,0 chrXIV 45634 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.50;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3901,382,0 chrXIV 46130 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.10;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3288,322,0 chrXIV 46179 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.92;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3247,334,0 chrXIV 46489 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.64;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3033,304,0 chrXIV 46554 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.21;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3825,382,0 chrXIV 46706 . G C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=26.34;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4135,418,0 chrXIV 46872 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=188;Dels=0.00;FS=3.013;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.913;QD=25.14;ReadPosRankSum=2.384;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4726,493,0 chrXIV 46932 . T G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.031;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.426;QD=22.20;ReadPosRankSum=2.406;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3819,397,0 chrXIV 46935 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.012;DP=176;Dels=0.00;FS=3.021;HaplotypeScore=6.5387;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=1.207;QD=22.17;ReadPosRankSum=2.365;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3902,391,0 chrXIV 47132 . C T 4416.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.8001;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=26.76;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4416,439,0 chrXIV 47216 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.08;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4643,463,0 chrXIV 47294 . A G 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=6.742;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.996;QD=24.94;ReadPosRankSum=2.349;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4913,499,0 chrXIV 47497 . T C 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=171;Dels=0.00;FS=8.703;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.952;QD=25.65;ReadPosRankSum=2.420;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,166:171:99:4386,436,0 chrXIV 47746 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3639,358,0 chrXIV 47799 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.034;QD=25.64;ReadPosRankSum=1.710;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:4000,403,0 chrXIV 48057 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.30;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3472,352,0 chrXIV 48148 . A C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.008;QD=23.69;ReadPosRankSum=2.249;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3483,348,0 chrXIV 48157 . C A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=23.97;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3595,355,0 chrXIV 48338 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=-0.664;QD=20.50;ReadPosRankSum=1.654;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:2821,280,0 chrXIV 48348 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=18.27;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2572,273,0 chrXIV 48359 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=19.49;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2703,273,0 chrXIV 48383 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=14.84;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2304,243,0 chrXIV 48389 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=13.60;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2060,204,0 chrXIV 48399 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=14.32;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2095,219,0 chrXIV 48463 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.07;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3634,361,0 chrXIV 48523 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=24.83;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3236,319,0 chrXIV 48883 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.58;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4733,484,0 chrXIV 49610 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.568;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.553;QD=25.63;ReadPosRankSum=1.683;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3614,373,0 chrXIV 49660 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.22;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3022,306,0 chrXIV 49898 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.275;QD=23.28;ReadPosRankSum=1.711;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3841,394,0 chrXIV 50094 . T G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.930;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.150;QD=23.56;ReadPosRankSum=1.706;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3120,313,0 chrXIV 50288 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.60;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3643,361,0 chrXIV 50444 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.42;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4245,439,0 chrXIV 50593 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.70;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3603,355,0 chrXIV 50736 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.976;QD=24.00;ReadPosRankSum=1.701;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2673,270,0 chrXIV 50745 . T A 2232 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.32;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2265,234,0 chrXIV 51041 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.90;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2566,247,0 chrXIV 51050 . C A 2260 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.12;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2293,228,0 chrXIV 51708 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=176;Dels=0.00;FS=3.110;HaplotypeScore=8.3862;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.492;QD=25.60;ReadPosRankSum=1.712;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4505,441,0 chrXIV 52095 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.85;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5687,559,0 chrXIV 52243 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=19.1996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5143,502,0 chrXIV 52327 . T C 7230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=283;Dels=0.00;FS=2.934;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.904;QD=25.55;ReadPosRankSum=2.380;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:2,279:283:99:7230,751,0 chrXIV 52659 . G T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.4792;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.55;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5071,511,0 chrXIV 52709 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.04;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4332,436,0 chrXIV 52856 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.1752;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.434;QD=19.55;ReadPosRankSum=1.713;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3637,381,0 chrXIV 53238 . T C 5334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.3294;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.259;QD=24.93;ReadPosRankSum=1.635;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5334,532,0 chrXIV 53465 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=26.17;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:5024,493,0 chrXIV 53489 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=197;Dels=0.00;FS=7.197;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.956;QD=23.10;ReadPosRankSum=2.424;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:4550,475,0 chrXIV 53556 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.793;DP=234;Dels=0.00;FS=23.579;HaplotypeScore=21.5071;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.070;QD=18.58;ReadPosRankSum=3.800;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:5,228:234:99:4348,448,0 chrXIV 53756 . G A 7947.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.16;SB=-4.520e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7947,829,0 chrXIV 54162 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3100,304,0 chrXIV 54428 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2567;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.26;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3299,331,0 chrXIV 54509 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=6.220;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.149;QD=23.12;ReadPosRankSum=2.386;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3584,364,0 chrXIV 54536 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.658;QD=23.12;ReadPosRankSum=1.712;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3953,409,0 chrXIV 54694 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4731;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.86;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3794,382,0 chrXIV 54722 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5084;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.40;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3446,349,0 chrXIV 54935 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.97;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2146,216,0 chrXIV 54995 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.887;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.695;QD=23.87;ReadPosRankSum=1.658;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2277,237,0 chrXIV 55037 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2714,279,0 chrXIV 55235 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=6.4092;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.690;QD=22.29;ReadPosRankSum=1.680;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3020,312,0 chrXIV 55287 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.12;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2387,240,0 chrXIV 55368 . C T 4359.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4359,433,0 chrXIV 55664 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.82;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4747,475,0 chrXIV 55900 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.044;QD=24.01;ReadPosRankSum=1.656;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3289,336,0 chrXIV 55925 . T G 2946 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5193;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.55;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2979,309,0 chrXIV 56021 . G T 1362 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.89;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1395,141,0 chrXIV 56281 . A G 293 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;QD=24.42;SB=-8.398e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:326,33,0 chrXIV 56359 . T A 568 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;QD=25.82;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:60:601,60,0 chrXIV 56917 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.40;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3403,337,0 chrXIV 57579 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.63;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3940,385,0 chrXIV 57838 . A G 6613.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=26.04;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6613,649,0 chrXIV 57896 . C T 5815.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.85;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5815,571,0 chrXIV 57930 . G A 5311.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.0444;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.40;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5311,532,0 chrXIV 58009 . G T 5778.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.75;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5778,580,0 chrXIV 58013 . G A 5481.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.10;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5481,562,0 chrXIV 58106 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=184;Dels=0.00;FS=13.698;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.644;QD=22.05;ReadPosRankSum=3.355;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:4058,409,0 chrXIV 58117 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.7154;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.130;QD=21.03;ReadPosRankSum=1.648;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4375,445,0 chrXIV 58193 . G A 5682.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.37;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5682,568,0 chrXIV 58317 . T C 6349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.312;QD=26.56;ReadPosRankSum=1.703;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:6349,634,0 chrXIV 58511 . C T 5776.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5776,568,0 chrXIV 58721 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.28;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3423,355,0 chrXIV 58958 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.9276;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=25.09;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3019,318,0 chrXIV 59033 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.7830;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.03;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3161,333,0 chrXIV 59823 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.28;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4444,448,0 chrXIV 59912 . G T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=25.60;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3277,331,0 chrXIV 59960 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=24.91;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4036,397,0 chrXIV 59998 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1939;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=26.38;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4431,439,0 chrXIV 60029 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=24.34;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3554,349,0 chrXIV 60034 . A T 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=151;Dels=0.00;FS=9.150;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.377;QD=23.54;ReadPosRankSum=3.355;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3555,355,0 chrXIV 60098 . G C 2931 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.50;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,137:143:99:2964,309,0 chrXIV 60302 . C T 7167.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=8.9137;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.84;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:7167,715,0 chrXIV 60667 . C T 5559.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5559,568,0 chrXIV 61469 . C T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4796,466,0 chrXIV 63207 . T G 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=6.362;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.170;QD=24.53;ReadPosRankSum=2.424;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4783,502,0 chrXIV 63403 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=16.31;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2169,216,0 chrXIV 64081 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=26.02;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3825,385,0 chrXIV 64617 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.06;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1624,165,0 chrXIV 64664 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.36;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1884,195,0 chrXIV 64820 . C A 1645 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.92;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1678,165,0 chrXIV 65061 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=2.973;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.724;QD=23.98;ReadPosRankSum=2.291;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3007,307,0 chrXIV 65101 . C G 3041 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.21;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3074,304,0 chrXIV 65107 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.8580;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.25;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3104,307,0 chrXIV 65258 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.51;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3644,358,0 chrXIV 65294 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.67;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4928,511,0 chrXIV 65331 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.9226;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.90;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5029,532,0 chrXIV 65647 . A T 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=6.804;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=25.11;ReadPosRankSum=2.418;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3942,400,0 chrXIV 65938 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=247;Dels=0.00;FS=7.722;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.045;QD=17.53;ReadPosRankSum=2.339;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:4330,454,0 chrXIV 66215 . C T 4467.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6599;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.68;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4467,439,0 chrXIV 66654 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7993;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.56;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3709,385,0 chrXIV 66973 . G A 4931.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=27.09;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4931,496,0 chrXIV 67383 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.89;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3144,316,0 chrXIV 69768 . A T 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=4.027;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.885;QD=23.58;ReadPosRankSum=1.657;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3277,322,0 chrXIV 76856 . A T 6567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=4.753;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.517;QD=27.14;ReadPosRankSum=1.675;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:6567,667,0 chrXIV 77017 . A T 6586.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6586,670,0 chrXIV 77260 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.6866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.165;QD=22.77;ReadPosRankSum=1.690;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3757,388,0 chrXIV 78583 . T C 6343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=249;Dels=0.00;FS=9.350;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.706;QD=25.47;ReadPosRankSum=2.948;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:6343,652,0 chrXIV 80433 . C G 3812.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.9858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.78;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3812,391,0 chrXIV 82802 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.78;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3936,388,0 chrXIV 83543 . G T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4510,445,0 chrXIV 84710 . C G 4708.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4708,487,0 chrXIV 85056 . A G 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.794;QD=25.34;ReadPosRankSum=1.713;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4611,484,0 chrXIV 86042 . G T 2206 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4883;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.21;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2239,222,0 chrXIV 86730 . A G 6608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=268;Dels=0.00;FS=3.142;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.633;QD=24.66;ReadPosRankSum=1.680;SB=-3.772e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:6608,664,0 chrXIV 86766 . G A 5876.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.9450;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.04;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5876,616,0 chrXIV 86790 . T G 6238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=269;Dels=0.00;FS=14.414;HaplotypeScore=13.6183;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.142;QD=23.19;ReadPosRankSum=3.421;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:4,262:269:99:6238,640,0 chrXIV 86934 . C T 7185.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=19.6856;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.69;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:7185,730,0 chrXIV 87195 . C T 6424.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.70;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6424,667,0 chrXIV 87229 . G T 5897.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.3140;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.67;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5897,577,0 chrXIV 87310 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=-1.141;QD=17.92;ReadPosRankSum=1.681;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:3674,379,0 chrXIV 87319 . A G 3100 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=131.1376;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=16.85;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3133,324,0 chrXIV 87321 . G A 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DP=190;Dels=0.00;FS=3.956;HaplotypeScore=136.9367;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=1;MQRankSum=-0.431;QD=16.09;ReadPosRankSum=-1.402;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3090,304,0 chrXIV 87334 . T C 289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.465;HaplotypeScore=152.1573;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=1;MQRankSum=-1.550;QD=1.68;ReadPosRankSum=1.692;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:36:322,36,0 chrXIV 87439 . G C 3964.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=26.60;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3964,400,0 chrXIV 87852 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.82;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2987,298,0 chrXIV 88100 . C A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.90;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4971,517,0 chrXIV 88106 . A T 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=229;Dels=0.00;FS=4.203;HaplotypeScore=6.4481;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.626;QD=22.40;ReadPosRankSum=1.672;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5130,508,0 chrXIV 88950 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=27.51;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1326,129,0 chrXIV 88974 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.874;QD=23.61;ReadPosRankSum=2.322;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1426,144,0 chrXIV 89169 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=25.87;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2879,297,0 chrXIV 89448 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=21.68;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2808,277,0 chrXIV 89451 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.792;QD=21.21;ReadPosRankSum=1.678;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2790,285,0 chrXIV 89494 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.426;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=-1.289;QD=17.37;ReadPosRankSum=1.680;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2361,237,0 chrXIV 89495 . T G 2306 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=17.34;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2339,234,0 chrXIV 89543 . T G 2985 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.03;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3018,304,0 chrXIV 89675 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.791;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.548;QD=24.46;ReadPosRankSum=1.710;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3865,394,0 chrXIV 89776 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.50;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2812,282,0 chrXIV 89837 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.1181;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.34;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4452,436,0 chrXIV 90029 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=24.38;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3462,343,0 chrXIV 90031 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=24.26;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3445,340,0 chrXIV 90137 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.61;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4430,433,0 chrXIV 90251 . T G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.66;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4486,457,0 chrXIV 90358 . G A 5941.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.1667;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.00;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5941,592,0 chrXIV 90414 . T C 5987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=245;Dels=0.00;FS=3.021;HaplotypeScore=20.6252;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.257;QD=24.44;ReadPosRankSum=2.369;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5987,601,0 chrXIV 90752 . G A 7172.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.48;SB=-3.877e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:7172,742,0 chrXIV 93163 . T C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.031;QD=23.37;ReadPosRankSum=1.670;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2697,279,0 chrXIV 94896 . A C 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6233;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.621;QD=23.24;ReadPosRankSum=2.359;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2566,267,0 chrXIV 95089 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.149;QD=25.32;ReadPosRankSum=1.659;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2489,246,0 chrXIV 95393 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.32;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3764,391,0 chrXIV 95510 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.50;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3243,319,0 chrXIV 95519 . T A 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.840;QD=24.33;ReadPosRankSum=1.627;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3244,322,0 chrXIV 95586 . C A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.33;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3732,367,0 chrXIV 95692 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.31;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3721,367,0 chrXIV 96083 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.59;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3369,334,0 chrXIV 96132 . T C 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=183;Dels=0.00;FS=15.662;HaplotypeScore=16.9939;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.287;QD=23.61;ReadPosRankSum=3.805;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:5,178:183:99:4321,448,0 chrXIV 96181 . C A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.01;FS=0.000;HaplotypeScore=11.8423;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.13;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4658,472,0 chrXIV 96218 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=9.8772;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.24;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3169,330,0 chrXIV 96228 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=18.2607;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.07;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3180,316,0 chrXIV 96324 . G A 5384.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=25.28;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5384,550,0 chrXIV 96482 . T C 4262.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=5.047;HaplotypeScore=10.2369;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=7;MQRankSum=1.693;QD=22.91;ReadPosRankSum=1.713;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4262,439,0 chrXIV 96610 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=6;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=1;MQRankSum=0.731;QD=3.14;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:6:50,6,0 chrXIV 102628 . C A 1771 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=23.30;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1804,183,0 chrXIV 102646 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=23.65;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2138,207,0 chrXIV 102681 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=25.50;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2863,283,0 chrXIV 102817 . T A 1495 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=18.69;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1528,159,0 chrXIV 102825 . A G 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=0.064;QD=17.63;ReadPosRankSum=1.647;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1461,153,0 chrXIV 102846 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=103;Dels=0.00;FS=13.572;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;MQRankSum=-1.912;QD=18.38;ReadPosRankSum=2.814;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1926,201,0 chrXIV 102872 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.22;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2388,240,0 chrXIV 102906 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.91;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3197,322,0 chrXIV 103108 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.217;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.450;QD=25.32;ReadPosRankSum=1.692;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:2236,222,0 chrXIV 103662 . A T 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.672;QD=24.06;ReadPosRankSum=1.592;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4162,430,0 chrXIV 103902 . T G 3742.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.68;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3742,379,0 chrXIV 104034 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.11;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3568,369,0 chrXIV 104153 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9250;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.503;QD=23.42;ReadPosRankSum=1.686;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3536,358,0 chrXIV 104189 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=133;Dels=0.00;FS=9.539;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.718;QD=24.89;ReadPosRankSum=2.916;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3310,331,0 chrXIV 104278 . C T 4709.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=27.54;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4709,475,0 chrXIV 104301 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=26.15;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4237,415,0 chrXIV 104374 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.28;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3609,364,0 chrXIV 104378 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.135;DP=158;Dels=0.00;FS=13.877;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.341;QD=22.66;ReadPosRankSum=4.144;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:6,152:158:99:3581,364,0 chrXIV 104504 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.80;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3736,382,0 chrXIV 104516 . C A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.71;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3706,379,0 chrXIV 104554 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.96;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2926,297,0 chrXIV 104770 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=18.38;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2036,201,0 chrXIV 104779 . G A 1760 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=17.43;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1793,183,0 chrXIV 104781 . A T 1849 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=18.13;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1882,186,0 chrXIV 104785 . C T 1903 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.62;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1936,189,0 chrXIV 104803 . G C 1646 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=16.30;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1679,177,0 chrXIV 104993 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=25.88;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2543,252,0 chrXIV 105051 . A T 2107 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=74.7306;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.41;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2140,213,0 chrXIV 105255 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.53;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4415,448,0 chrXIV 105274 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.53;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4415,463,0 chrXIV 105379 . T C 5911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=253;Dels=0.00;FS=3.098;HaplotypeScore=20.4293;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.490;QD=23.36;ReadPosRankSum=1.704;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5911,625,0 chrXIV 105689 . G C 8411.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=32.7850;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.67;SB=-4.018e+03 GT:AD:DP:GQ:PL 1/1:0,336:341:99:8411,862,0 chrXIV 105739 . A G 9401.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=396;Dels=0.00;FS=7.638;HaplotypeScore=25.3224;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.053;QD=23.74;ReadPosRankSum=2.437;SB=-4.560e+03 GT:AD:DP:GQ:PL 1/1:2,392:396:99:9401,970,0 chrXIV 105839 . G A 11627.01 filter AC=2;AF=1.00;AN=2;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=26.0747;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.55;SB=-4.955e+03 GT:AD:DP:GQ:PL 1/1:0,433:438:99:11627,1157,0 chrXIV 105923 . A G 9895.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=431;Dels=0.00;FS=3.016;HaplotypeScore=35.9846;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.335;QD=22.96;ReadPosRankSum=2.421;SB=-5.445e+03 GT:AD:DP:GQ:PL 1/1:2,426:431:99:9895,1027,0 chrXIV 106004 . T G 9443.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=20.9114;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.20;SB=-4.270e+03 GT:AD:DP:GQ:PL 1/1:0,404:407:99:9443,962,0 chrXIV 106690 . G C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4037,409,0 chrXIV 107444 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.2083;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.36;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3808,391,0 chrXIV 109881 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.90;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5090,520,0 chrXIV 110716 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.80;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3174,330,0 chrXIV 110738 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=125;Dels=0.00;FS=13.103;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.553;QD=23.34;ReadPosRankSum=2.895;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2950,292,0 chrXIV 110765 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1085;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.64;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2822,277,0 chrXIV 111323 . T C 6410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=3.539;HaplotypeScore=15.4084;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.513;QD=25.34;ReadPosRankSum=1.718;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6410,646,0 chrXIV 112640 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3571,361,0 chrXIV 116678 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.42;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2219,225,0 chrXIV 116881 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3612,378,0 chrXIV 118249 . G C 6428.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.5859;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.01;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:6428,658,0 chrXIV 118398 . C T 6810.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.5325;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-3.624e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6810,721,0 chrXIV 119900 . C A 2925 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2958,312,0 chrXIV 121033 . A T 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.379;QD=21.36;ReadPosRankSum=1.624;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1400,144,0 chrXIV 121619 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=17.9471;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.58;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3419,337,0 chrXIV 122856 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.751;QD=25.53;ReadPosRankSum=1.674;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4596,472,0 chrXIV 123423 . A C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5524;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.021;QD=23.13;ReadPosRankSum=1.710;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3632,378,0 chrXIV 123935 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3383,337,0 chrXIV 126633 . G T 1969 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2002,198,0 chrXIV 126744 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1249,126,0 chrXIV 128908 . G A 3146 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.58;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3179,324,0 chrXIV 129960 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.31;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2994,309,0 chrXIV 135401 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.5746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3485,343,0 chrXIV 137285 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.077;QD=23.88;ReadPosRankSum=1.698;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4848,496,0 chrXIV 137678 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.43;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3263,322,0 chrXIV 140943 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=9.114;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.817;QD=24.36;ReadPosRankSum=2.346;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2932,295,0 chrXIV 141630 . C A 3112 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3145,316,0 chrXIV 142083 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3889,385,0 chrXIV 145164 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3045,318,0 chrXIV 148037 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.0517;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.89;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4061,406,0 chrXIV 148908 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3327,328,0 chrXIV 149150 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.159;QD=22.27;ReadPosRankSum=1.705;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2861,291,0 chrXIV 149537 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=7.610;HaplotypeScore=12.1079;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.329;QD=23.19;ReadPosRankSum=2.401;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3548,367,0 chrXIV 150779 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3637,370,0 chrXIV 151127 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3825,391,0 chrXIV 151394 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3575,361,0 chrXIV 153222 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.962;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.074;QD=25.96;ReadPosRankSum=2.417;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3894,403,0 chrXIV 156755 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3183,316,0 chrXIV 158956 . C G 4188.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:4188,439,0 chrXIV 159166 . A T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.962;QD=23.39;ReadPosRankSum=1.681;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3190,325,0 chrXIV 159230 . T A 3092 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.97;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3125,316,0 chrXIV 159352 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.644;DP=123;Dels=0.00;FS=12.380;HaplotypeScore=14.5557;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.109;QD=21.54;ReadPosRankSum=3.733;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:5,118:123:99:2682,276,0 chrXIV 162494 . C A 3146 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=28.09;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3179,313,0 chrXIV 163967 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.33;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3172,316,0 chrXIV 165144 . T G 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.407;QD=24.92;ReadPosRankSum=1.645;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:4087,424,0 chrXIV 166587 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2894,297,0 chrXIV 168133 . T C 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.00;FS=6.980;HaplotypeScore=8.9410;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.256;QD=23.47;ReadPosRankSum=2.292;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4436,442,0 chrXIV 168178 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=4.663;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.575;QD=22.12;ReadPosRankSum=1.680;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4423,442,0 chrXIV 168578 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=171;Dels=0.00;FS=14.050;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=24.01;ReadPosRankSum=3.408;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:4106,421,0 chrXIV 168984 . T A 3104 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3137,324,0 chrXIV 169290 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=149;Dels=0.00;FS=2.797;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.898;QD=24.75;ReadPosRankSum=2.416;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3687,370,0 chrXIV 169452 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.52;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3496,352,0 chrXIV 169938 . T G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5429;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.561;QD=25.35;ReadPosRankSum=1.683;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3599,378,0 chrXIV 170778 . G A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4371,430,0 chrXIV 171097 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.55;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3636,370,0 chrXIV 178214 . C A 2954 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2987,295,0 chrXIV 178487 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.51;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3991,397,0 chrXIV 184703 . A G 5998.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5998,598,0 chrXIV 185261 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1387,135,0 chrXIV 185411 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=18.195;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.443;QD=21.92;ReadPosRankSum=1.706;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2948,289,0 chrXIV 185417 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.60;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2464,252,0 chrXIV 185626 . A G 5671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=225;Dels=0.00;FS=2.925;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.736;QD=25.20;ReadPosRankSum=2.417;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5671,574,0 chrXIV 185846 . T C 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.154;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.904;QD=24.51;ReadPosRankSum=1.694;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4535,472,0 chrXIV 186675 . A C 4170.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.10;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4170,427,0 chrXIV 186892 . G T 1528 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=20.65;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1561,159,0 chrXIV 186916 . C A 1426 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=22.28;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1459,147,0 chrXIV 186921 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-1.639;QD=23.39;ReadPosRankSum=1.639;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1764,183,0 chrXIV 186964 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=23.47;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2028,201,0 chrXIV 186987 . T A 1852 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=25.03;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1885,189,0 chrXIV 187320 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3938,388,0 chrXIV 187353 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1983;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.971;QD=25.41;ReadPosRankSum=1.706;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3354,334,0 chrXIV 187884 . A C 1831 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1864,189,0 chrXIV 188086 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=17.7652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.545;QD=26.04;ReadPosRankSum=3.322;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:5,160:165:99:4297,450,0 chrXIV 191108 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.59;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1777,174,0 chrXIV 191137 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.30;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1399,141,0 chrXIV 191184 . C A 1504 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.87;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1537,153,0 chrXIV 191241 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2661,267,0 chrXIV 191365 . T G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.339;QD=22.57;ReadPosRankSum=1.696;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2245,237,0 chrXIV 191560 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2754,282,0 chrXIV 191890 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.17;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4593,466,0 chrXIV 191917 . T C 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5484;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.242;QD=23.71;ReadPosRankSum=0.274;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:4197,416,0 chrXIV 192641 . G T 3011 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3044,298,0 chrXIV 193237 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.53;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2152,216,0 chrXIV 193276 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.19;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2809,279,0 chrXIV 193417 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2579,258,0 chrXIV 193473 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.55;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3053,298,0 chrXIV 193628 . T G 3046 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.03;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3079,321,0 chrXIV 193668 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=27.86;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3098,304,0 chrXIV 194047 . A G 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=4.117;HaplotypeScore=5.0726;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.299;QD=25.69;ReadPosRankSum=1.689;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:2088,210,0 chrXIV 194260 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=125;Dels=0.00;FS=7.125;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.433;QD=23.63;ReadPosRankSum=2.409;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2987,298,0 chrXIV 194299 . A G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.917;QD=23.30;ReadPosRankSum=1.645;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2875,291,0 chrXIV 194351 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.47;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3116,307,0 chrXIV 194419 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8483;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2967,303,0 chrXIV 194533 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.11;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2461,252,0 chrXIV 194614 . A C 2732 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.61;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:2765,282,0 chrXIV 194656 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.42;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3150,307,0 chrXIV 194713 . C G 2924 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.99;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2957,309,0 chrXIV 195206 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.591;QD=24.15;ReadPosRankSum=2.353;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2496,249,0 chrXIV 195358 . A C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.17;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3716,376,0 chrXIV 195766 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.049;QD=24.74;ReadPosRankSum=1.716;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5443,544,0 chrXIV 196115 . A G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.3835;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.105;QD=19.81;ReadPosRankSum=2.386;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1578,165,0 chrXIV 197519 . C T 4996.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=26.57;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4996,493,0 chrXIV 198392 . C T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2561;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.56;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4908,499,0 chrXIV 199105 . G A 4980.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.4049;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4980,508,0 chrXIV 199813 . G C 6905.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=13.8015;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.39;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6905,712,0 chrXIV 200256 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.93;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3540,355,0 chrXIV 201973 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2189,222,0 chrXIV 202394 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.81;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3944,394,0 chrXIV 202414 . T A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.77;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3423,340,0 chrXIV 203039 . T A 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=3.189;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.262;QD=26.43;ReadPosRankSum=1.697;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:5233,526,0 chrXIV 205138 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.42;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3813,391,0 chrXIV 205199 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.704;QD=18.61;ReadPosRankSum=1.714;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3611,370,0 chrXIV 205208 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.631;QD=18.30;ReadPosRankSum=1.714;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:3623,370,0 chrXIV 205874 . C T 5565.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.8714;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.30;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5565,544,0 chrXIV 206187 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3862,391,0 chrXIV 206336 . G A 5537.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=18.3359;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.14;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5537,547,0 chrXIV 206575 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3209,319,0 chrXIV 206709 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.33;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2262,231,0 chrXIV 206756 . G C 2334 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=26.22;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2367,237,0 chrXIV 206786 . G A 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;DP=102;Dels=0.00;FS=4.645;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.679;QD=24.12;ReadPosRankSum=-0.442;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2493,225,0 chrXIV 206848 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=106;Dels=0.00;FS=4.260;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.033;QD=22.56;ReadPosRankSum=1.699;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2424,252,0 chrXIV 206892 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=4.014;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.705;QD=21.84;ReadPosRankSum=1.705;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2785,277,0 chrXIV 206906 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=19.14;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2617,273,0 chrXIV 206920 . A G 2557 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=17.28;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2590,273,0 chrXIV 206936 . C A 2861 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=18.82;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2894,286,0 chrXIV 206968 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=146;Dels=0.00;FS=5.671;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.368;QD=16.71;ReadPosRankSum=2.952;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:2472,252,0 chrXIV 206986 . T C 2601 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.12;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2634,276,0 chrXIV 207040 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4717;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.49;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3284,334,0 chrXIV 207094 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=24.32;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4062,421,0 chrXIV 207129 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=6.827;HaplotypeScore=10.0086;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.142;QD=24.40;ReadPosRankSum=2.390;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4026,415,0 chrXIV 207220 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.119;HaplotypeScore=15.7442;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.787;QD=22.70;ReadPosRankSum=1.646;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2802,283,0 chrXIV 207283 . T G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.23;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3335,334,0 chrXIV 207292 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.3762;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.99;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3519,361,0 chrXIV 207346 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=3.027;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.752;QD=18.76;ReadPosRankSum=2.369;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2885,300,0 chrXIV 207358 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.83;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2730,282,0 chrXIV 207451 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.317;QD=27.02;ReadPosRankSum=1.276;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4513,457,0 chrXIV 207631 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.18;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3748,391,0 chrXIV 207736 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2686,282,0 chrXIV 207991 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.40;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3095,307,0 chrXIV 208195 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.05;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3544,361,0 chrXIV 208275 . C G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.78;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4022,397,0 chrXIV 208418 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7007;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.647;QD=24.16;ReadPosRankSum=1.711;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4059,421,0 chrXIV 208468 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=172;Dels=0.00;FS=6.096;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.047;QD=24.54;ReadPosRankSum=2.936;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:4221,439,0 chrXIV 208804 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.98;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3028,304,0 chrXIV 208843 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.81;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2691,273,0 chrXIV 208921 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.69;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2705,273,0 chrXIV 209095 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=3.052;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.531;QD=24.08;ReadPosRankSum=2.398;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2345,243,0 chrXIV 209155 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2249,225,0 chrXIV 209209 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2469,246,0 chrXIV 209482 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.594;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.855;QD=24.59;ReadPosRankSum=2.411;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3180,328,0 chrXIV 209761 . A T 2715 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2748,282,0 chrXIV 209853 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4430,454,0 chrXIV 212326 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=23.40;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3814,382,0 chrXIV 212344 . T G 3845.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.040;QD=22.23;ReadPosRankSum=1.672;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3845,388,0 chrXIV 212349 . C T 3884.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=22.85;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3884,385,0 chrXIV 212353 . G A 3847.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=22.50;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3847,382,0 chrXIV 212449 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.09;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3614,367,0 chrXIV 212482 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.70;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3531,364,0 chrXIV 212538 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.30;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4077,409,0 chrXIV 212579 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.7047;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=24.43;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:4006,406,0 chrXIV 212631 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1458;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.00;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3208,339,0 chrXIV 212937 . A T 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=98;Dels=0.00;FS=7.632;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.339;QD=25.57;ReadPosRankSum=2.400;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2539,255,0 chrXIV 213031 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2135;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.61;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3534,364,0 chrXIV 213061 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.92;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3758,373,0 chrXIV 213126 . T A 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.122;QD=26.38;ReadPosRankSum=1.712;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4485,448,0 chrXIV 213146 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.33;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3896,391,0 chrXIV 213493 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=7.410;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.646;QD=24.91;ReadPosRankSum=2.407;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4334,451,0 chrXIV 213556 . T A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.68;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3775,370,0 chrXIV 213580 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=3.353;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.398;QD=23.99;ReadPosRankSum=1.374;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3478,334,0 chrXIV 213646 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=25.82;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4621,463,0 chrXIV 213670 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=25.76;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4508,457,0 chrXIV 213772 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=28.49;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3960,391,0 chrXIV 213828 . C G 4315.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=26.31;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4315,445,0 chrXIV 213856 . C T 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.209;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.672;QD=21.32;ReadPosRankSum=-1.396;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2911,303,0 chrXIV 213861 . T A 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.106;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.948;QD=20.80;ReadPosRankSum=1.682;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2882,300,0 chrXIV 214071 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.62;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3638,361,0 chrXIV 214622 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.56;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3253,316,0 chrXIV 214714 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.84;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2565,255,0 chrXIV 214795 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.04;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2246,219,0 chrXIV 214833 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.45;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2196,228,0 chrXIV 214888 . G C 2300 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=26.74;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2333,240,0 chrXIV 214918 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.155;QD=25.64;ReadPosRankSum=1.660;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2494,252,0 chrXIV 215120 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=131;Dels=0.00;FS=6.059;HaplotypeScore=11.3845;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.477;QD=24.09;ReadPosRankSum=2.821;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3189,336,0 chrXIV 215180 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.13;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:4124,406,0 chrXIV 215285 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.91;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4483,451,0 chrXIV 215462 . T C 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=172;Dels=0.00;FS=6.411;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.358;QD=24.78;ReadPosRankSum=2.421;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4263,445,0 chrXIV 217012 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:922,90,0 chrXIV 218831 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.2725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2492,244,0 chrXIV 218903 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.78;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1793,180,0 chrXIV 218959 . T A 1613 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.20;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1646,162,0 chrXIV 220550 . T G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.392;QD=21.89;ReadPosRankSum=1.667;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2353,234,0 chrXIV 220551 . T A 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=6.061;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.695;QD=21.99;ReadPosRankSum=2.267;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2408,237,0 chrXIV 220663 . A T 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=143;Dels=0.00;FS=14.133;HaplotypeScore=13.3258;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.542;QD=24.84;ReadPosRankSum=2.951;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3552,349,0 chrXIV 220950 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.48;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4161,427,0 chrXIV 223382 . T A 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=4.228;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=22.41;ReadPosRankSum=1.655;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2050,207,0 chrXIV 223831 . G A 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.738;QD=20.64;ReadPosRankSum=0.227;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2572,258,0 chrXIV 225841 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.215;QD=26.80;ReadPosRankSum=1.706;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3618,358,0 chrXIV 226114 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.82;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4693,472,0 chrXIV 226580 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.6017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4863,499,0 chrXIV 226779 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=192;Dels=0.00;FS=5.237;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=23.49;ReadPosRankSum=3.387;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4510,463,0 chrXIV 229890 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=81.0089;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.41;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2514,255,0 chrXIV 229970 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.16;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2021,204,0 chrXIV 230942 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=3.015;HaplotypeScore=13.6734;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.335;QD=24.96;ReadPosRankSum=2.346;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3594,361,0 chrXIV 231034 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=26.51;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3367,328,0 chrXIV 231112 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.907;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.484;QD=21.90;ReadPosRankSum=2.196;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3395,357,0 chrXIV 231426 . A G 5531.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=24.05;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5531,544,0 chrXIV 231435 . G T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.13;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5310,565,0 chrXIV 231454 . C A 5313.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.80;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5313,517,0 chrXIV 232438 . C T 4603.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4603,451,0 chrXIV 232508 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=2.733;HaplotypeScore=9.0479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.648;QD=24.47;ReadPosRankSum=2.381;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4429,442,0 chrXIV 232598 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3469,358,0 chrXIV 232914 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=162;Dels=0.00;FS=2.552;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.870;QD=24.90;ReadPosRankSum=2.919;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:4034,424,0 chrXIV 233507 . A G 5203.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5203,538,0 chrXIV 233585 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.47;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3685,384,0 chrXIV 234325 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=28.36;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3517,346,0 chrXIV 234545 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.72;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4821,478,0 chrXIV 234916 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.138;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.231;QD=25.07;ReadPosRankSum=1.672;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4388,457,0 chrXIV 236058 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1972,189,0 chrXIV 237780 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.95;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3227,333,0 chrXIV 237838 . T G 4396.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.98;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4396,454,0 chrXIV 238429 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=181;Dels=0.00;FS=9.172;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.825;QD=25.34;ReadPosRankSum=3.411;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:4,175:181:99:4586,463,0 chrXIV 239611 . G C 7674.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-3.832e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:7674,778,0 chrXIV 240005 . A C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.696;QD=24.67;ReadPosRankSum=1.673;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2944,306,0 chrXIV 242111 . C T 6526.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.10;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6526,640,0 chrXIV 242246 . A G 5688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.648;QD=24.41;ReadPosRankSum=0.532;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5688,604,0 chrXIV 242307 . T C 6079.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.20;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:6079,613,0 chrXIV 243194 . G T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.92;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4329,430,0 chrXIV 243291 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7074;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.913;QD=25.11;ReadPosRankSum=-1.117;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4671,466,0 chrXIV 243530 . A T 2908 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2941,297,0 chrXIV 244572 . T G 5694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.030;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.033;QD=25.42;ReadPosRankSum=1.670;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5694,574,0 chrXIV 245680 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.560;QD=25.67;ReadPosRankSum=1.683;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3697,373,0 chrXIV 245895 . G C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3586,361,0 chrXIV 246138 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2293,225,0 chrXIV 246275 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3119,321,0 chrXIV 247567 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.0552;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.39;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4634,463,0 chrXIV 249918 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.96;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2263,222,0 chrXIV 250138 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2860,286,0 chrXIV 250455 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.47;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:3082,301,0 chrXIV 250504 . G T 3050 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.85;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3083,310,0 chrXIV 250840 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=3.004;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.151;QD=22.90;ReadPosRankSum=2.369;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2827,288,0 chrXIV 250896 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.6036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2980,292,0 chrXIV 252203 . C G 5560.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5560,562,0 chrXIV 252919 . T G 976 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=12.05;MQ0=114;QD=5.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:62,133:195:99:1009,114,0 chrXIV 254148 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3372,349,0 chrXIV 254474 . C T 5316.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.73;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5316,535,0 chrXIV 254495 . T C 5408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.257;DP=250;Dels=0.00;FS=4.483;HaplotypeScore=18.3111;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.270;QD=21.63;ReadPosRankSum=4.368;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:7,243:250:99:5408,547,0 chrXIV 254579 . C T 8220.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=17.0747;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.43;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:8220,812,0 chrXIV 254632 . T C 8526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.267;QD=25.22;ReadPosRankSum=1.649;SB=-4.016e+03 GT:AD:DP:GQ:PL 1/1:1,334:338:99:8526,877,0 chrXIV 254872 . A G 1418.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;DP=301;Dels=0.00;FS=67.961;HaplotypeScore=4.8333;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=0;MQRankSum=-5.346;QD=4.71;ReadPosRankSum=-4.272;SB=-1.191e+03 GT:AD:DP:GQ:PL 0/1:165,136:301:99:1448,0,1739 chrXIV 254873 . G A 1391.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DP=296;Dels=0.00;FS=60.882;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=0;MQRankSum=-4.968;QD=4.70;ReadPosRankSum=-5.099;SB=-1.208e+03 GT:AD:DP:GQ:PL 0/1:162,133:296:99:1421,0,1702 chrXIV 254879 . T A 1386.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.930;DP=290;Dels=0.00;FS=59.431;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=42.67;MQ0=0;MQRankSum=-5.829;QD=4.78;ReadPosRankSum=-8.175;SB=-9.290e+02 GT:AD:DP:GQ:PL 0/1:172,118:290:99:1416,0,1930 chrXIV 254882 . T G 1934.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;DP=283;Dels=0.00;FS=56.423;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=42.38;MQ0=0;MQRankSum=2.975;QD=6.83;ReadPosRankSum=9.092;SB=-1.023e+03 GT:AD:DP:GQ:PL 0/1:110,173:283:99:1964,0,1161 chrXIV 254885 . A T 740.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;DP=277;Dels=0.00;FS=48.772;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=41.80;MQ0=0;MQRankSum=-6.116;QD=2.67;ReadPosRankSum=-7.622;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:188,89:277:99:770,0,2250 chrXIV 254896 . G A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.237;DP=238;Dels=0.00;FS=23.962;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=43.67;MQ0=0;MQRankSum=-4.769;QD=0.08;ReadPosRankSum=-4.056;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:198,39:238:50:50,0,2569 chrXIV 254897 . A G 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;DP=239;Dels=0.00;FS=23.771;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=43.62;MQ0=0;MQRankSum=-5.012;QD=0.05;ReadPosRankSum=-4.966;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:200,39:239:42:42,0,2886 chrXIV 254900 . C T 95.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.376;DP=235;Dels=0.00;FS=24.140;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=-5.699;QD=0.40;ReadPosRankSum=-6.222;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:196,39:235:99:125,0,2811 chrXIV 254961 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.16;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3249,322,0 chrXIV 254966 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=21.81;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3337,325,0 chrXIV 255028 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=22.75;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3218,331,0 chrXIV 255086 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=59.6452;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.18;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1378,153,0 chrXIV 255178 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=24.34;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2297,237,0 chrXIV 255189 . A T 1957 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=22.24;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1990,207,0 chrXIV 255192 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=22.53;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2061,201,0 chrXIV 255215 . G A 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.428;QD=20.62;ReadPosRankSum=1.651;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1806,174,0 chrXIV 255330 . C A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.76;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4457,445,0 chrXIV 255358 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=173;Dels=0.00;FS=8.494;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.650;QD=24.77;ReadPosRankSum=2.335;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4286,430,0 chrXIV 255754 . C A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.73;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3911,391,0 chrXIV 258590 . G C 2840 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.67;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2873,289,0 chrXIV 258883 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4035,397,0 chrXIV 259198 . T A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3754,364,0 chrXIV 259415 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.95;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3268,334,0 chrXIV 259493 . A T 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=125;Dels=0.00;FS=5.827;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.895;QD=23.59;ReadPosRankSum=2.863;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2982,306,0 chrXIV 259694 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=2.999;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.692;QD=23.94;ReadPosRankSum=2.295;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3806,405,0 chrXIV 260357 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.70;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1940,189,0 chrXIV 260586 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.27;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2149,216,0 chrXIV 260605 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.97;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1950,192,0 chrXIV 260618 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.970;QD=19.20;ReadPosRankSum=1.663;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1953,195,0 chrXIV 261045 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.40;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3582,346,0 chrXIV 261149 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3382,340,0 chrXIV 261362 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.96;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2993,309,0 chrXIV 261635 . G T 2805 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.82;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2838,288,0 chrXIV 261659 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.39;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3054,318,0 chrXIV 261740 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.406;DP=163;Dels=0.00;FS=8.841;HaplotypeScore=9.4965;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.692;QD=24.69;ReadPosRankSum=3.395;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:4024,412,0 chrXIV 261861 . G C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.52;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3751,376,0 chrXIV 262265 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.14;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2519,252,0 chrXIV 262301 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.23;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2611,258,0 chrXIV 262310 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.11;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2397,237,0 chrXIV 262400 . T C 2625 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2658,267,0 chrXIV 262513 . T G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=6.524;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.626;QD=24.26;ReadPosRankSum=2.365;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2847,294,0 chrXIV 263036 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.76;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4061,427,0 chrXIV 263487 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.07;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2392,234,0 chrXIV 263592 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.0406;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.56;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:89:99:1596,162,0 chrXIV 263625 . T A 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=12.4940;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.605;QD=22.99;ReadPosRankSum=1.690;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1941,195,0 chrXIV 263896 . A C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=169;Dels=0.00;FS=3.535;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.442;QD=23.55;ReadPosRankSum=1.608;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3980,415,0 chrXIV 263968 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8250;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.10;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3580,358,0 chrXIV 264232 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=187;Dels=0.00;FS=9.496;HaplotypeScore=15.8278;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.556;QD=21.26;ReadPosRankSum=2.423;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3976,406,0 chrXIV 264468 . G T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.2612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4003,412,0 chrXIV 264537 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=2.763;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.975;QD=25.07;ReadPosRankSum=2.399;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3635,364,0 chrXIV 265092 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4319,439,0 chrXIV 265258 . G C 5439.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.6257;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,226:231:99:5439,550,0 chrXIV 265328 . C T 5761.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.41;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5761,559,0 chrXIV 265514 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.98;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3789,373,0 chrXIV 265583 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.476;QD=21.66;ReadPosRankSum=2.396;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3022,315,0 chrXIV 265690 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.68;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2378,237,0 chrXIV 266015 . C A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.76;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3849,394,0 chrXIV 266760 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.38;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3032,309,0 chrXIV 266800 . A G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.311;QD=23.73;ReadPosRankSum=1.703;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2833,283,0 chrXIV 266808 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.14;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2856,288,0 chrXIV 266839 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.47;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2008,207,0 chrXIV 266907 . T C 1936 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.20;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1969,201,0 chrXIV 266924 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.25;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2264,222,0 chrXIV 267161 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.74;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2556,252,0 chrXIV 267267 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1727,180,0 chrXIV 268096 . T A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4894,487,0 chrXIV 268265 . A G 6679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=252;Dels=0.00;FS=11.013;HaplotypeScore=17.6771;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.152;QD=26.50;ReadPosRankSum=2.362;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:6679,676,0 chrXIV 268398 . T G 7583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=22.8931;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.213;QD=24.46;ReadPosRankSum=1.709;SB=-3.675e+03 GT:AD:DP:GQ:PL 1/1:1,307:310:99:7583,763,0 chrXIV 268643 . G A 4876.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.67;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4876,481,0 chrXIV 268898 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3277;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.94;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4046,400,0 chrXIV 269266 . C G 5502.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5502,541,0 chrXIV 269607 . G C 5178.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.0556;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.31;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5178,535,0 chrXIV 271098 . T G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=104;Dels=0.00;FS=3.012;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.178;QD=25.21;ReadPosRankSum=2.402;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2655,270,0 chrXIV 272165 . C T 5790.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.8007;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.73;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5790,580,0 chrXIV 275245 . C A 3050 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3083,310,0 chrXIV 277334 . A T 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=208;Dels=0.00;FS=8.293;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.274;QD=25.95;ReadPosRankSum=3.393;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:5398,544,0 chrXIV 277361 . G A 5472.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=27.36;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5472,541,0 chrXIV 277454 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.09;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4014,406,0 chrXIV 279996 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:637,63,0 chrXIV 281196 . G A 4949.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4949,490,0 chrXIV 281634 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.52;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3457,355,0 chrXIV 282032 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.24;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2867,283,0 chrXIV 282550 . T C 6154.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.92;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6154,631,0 chrXIV 283358 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1498,150,0 chrXIV 283562 . A G 622 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,26:28:66:655,66,0 chrXIV 285036 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.4188;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.36;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:4215,442,0 chrXIV 286277 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2537,252,0 chrXIV 287504 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2835,294,0 chrXIV 295050 . T C 4997.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.2860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4997,511,0 chrXIV 295870 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.07;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3520,367,0 chrXIV 296367 . G C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5871;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.77;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4087,421,0 chrXIV 296394 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.1314;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.204;QD=24.67;ReadPosRankSum=1.712;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4218,427,0 chrXIV 296683 . C A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.89;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4297,424,0 chrXIV 297016 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.63;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3694,376,0 chrXIV 297187 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.41;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2969,306,0 chrXIV 297196 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.16;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3137,310,0 chrXIV 297253 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3549;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.18;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3282,339,0 chrXIV 297334 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0842;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.10;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2774,294,0 chrXIV 297366 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.03;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3157,319,0 chrXIV 297636 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.50;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2411,240,0 chrXIV 297638 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.59;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2494,246,0 chrXIV 297762 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=76.1763;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.59;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2365,240,0 chrXIV 297810 . A G 2892 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=18.2859;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.74;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2925,303,0 chrXIV 298016 . T C 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.074;HaplotypeScore=6.2667;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.577;QD=22.83;ReadPosRankSum=1.699;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4748,484,0 chrXIV 298031 . C A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.56;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4669,466,0 chrXIV 298096 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.128;DP=139;Dels=0.00;FS=13.981;HaplotypeScore=11.9288;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.090;QD=21.23;ReadPosRankSum=4.128;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:6,131:139:99:2984,309,0 chrXIV 298110 . C A 3108 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.5082;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.86;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3141,310,0 chrXIV 298243 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=25.49;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2990,295,0 chrXIV 298397 . A C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=6.048;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.666;QD=27.27;ReadPosRankSum=1.710;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:4309,433,0 chrXIV 298460 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.63;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3489,349,0 chrXIV 299003 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.47;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3621,367,0 chrXIV 299018 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.99;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3288,322,0 chrXIV 299515 . A G 2664 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2697,276,0 chrXIV 300017 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.109;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.915;QD=23.27;ReadPosRankSum=1.654;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4189,424,0 chrXIV 300265 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.96;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2669,262,0 chrXIV 300788 . T C 781 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.36;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:84:814,84,0 chrXIV 301067 . T A 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.602;QD=28.57;ReadPosRankSum=1.667;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1547,153,0 chrXIV 301290 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.191;QD=23.77;ReadPosRankSum=1.696;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2315,237,0 chrXIV 301407 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.274;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.143;QD=24.79;ReadPosRankSum=1.691;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2165,231,0 chrXIV 303860 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.07;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4693,472,0 chrXIV 304122 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.68;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3629,364,0 chrXIV 304693 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.59;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2227,222,0 chrXIV 306250 . A G 5853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=244;Dels=0.00;FS=2.912;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.287;QD=23.99;ReadPosRankSum=2.419;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5853,601,0 chrXIV 306707 . T C 10480.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.984;DP=453;Dels=0.00;FS=26.941;HaplotypeScore=32.0406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.704;QD=23.13;ReadPosRankSum=4.192;SB=-4.356e+03 GT:AD:DP:GQ:PL 1/1:6,445:453:99:10480,1090,0 chrXIV 307339 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3212,328,0 chrXIV 309212 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=147;Dels=0.00;FS=4.132;HaplotypeScore=17.3742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=21.77;ReadPosRankSum=1.684;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3233,328,0 chrXIV 310181 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2475,249,0 chrXIV 312454 . C T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.99;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5459,535,0 chrXIV 313182 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2926,292,0 chrXIV 314163 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.25;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4489,460,0 chrXIV 314885 . C T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.14;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4651,475,0 chrXIV 318991 . A T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4309,433,0 chrXIV 319557 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3867,411,0 chrXIV 319699 . C T 5210.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.67;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5210,520,0 chrXIV 322037 . A C 545 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.14;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:57:578,57,0 chrXIV 322462 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=25.35;ReadPosRankSum=1.691;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4309,448,0 chrXIV 322844 . C A 2987 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3020,312,0 chrXIV 323367 . C G 4652.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.5253;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.74;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4652,484,0 chrXIV 323874 . C G 4904.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.8654;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.02;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4904,505,0 chrXIV 324247 . G C 3171 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4281;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.39;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3204,328,0 chrXIV 324447 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.32;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2590,255,0 chrXIV 328472 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=7.588;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.103;QD=24.31;ReadPosRankSum=2.402;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3792,399,0 chrXIV 328483 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.4907;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.64;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3795,373,0 chrXIV 328670 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.160;DP=160;Dels=0.00;FS=5.018;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.293;QD=23.71;ReadPosRankSum=3.404;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:4,154:160:99:3794,388,0 chrXIV 329212 . T G 3172 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.58;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3205,328,0 chrXIV 329339 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.31;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3468,349,0 chrXIV 329474 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.146;QD=25.03;ReadPosRankSum=1.711;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4155,424,0 chrXIV 330243 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.94;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2502,247,0 chrXIV 330284 . A T 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.49;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2754,282,0 chrXIV 330285 . T G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=125;Dels=0.00;FS=8.585;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.148;QD=21.04;ReadPosRankSum=3.387;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:2663,282,0 chrXIV 330365 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=3.146;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.226;QD=25.11;ReadPosRankSum=1.705;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:3339,331,0 chrXIV 330395 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.41;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3512,349,0 chrXIV 330503 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4943;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.207;QD=27.32;ReadPosRankSum=1.667;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4344,436,0 chrXIV 330713 . G T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.23;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4433,439,0 chrXIV 330944 . G T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.6940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3308,340,0 chrXIV 331023 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.095;QD=24.54;ReadPosRankSum=2.408;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2904,297,0 chrXIV 331067 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3750,399,0 chrXIV 331401 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9731;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.70;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3269,334,0 chrXIV 331411 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.10;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3419,343,0 chrXIV 331752 . T A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.46;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3547,355,0 chrXIV 331884 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.94;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4168,433,0 chrXIV 332417 . T G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=162;Dels=0.00;FS=5.423;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.323;QD=25.33;ReadPosRankSum=2.808;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:4104,415,0 chrXIV 332827 . C T 5844.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.6953;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.09;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5844,580,0 chrXIV 332894 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.7407;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.96;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3612,381,0 chrXIV 332987 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.87;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4604,460,0 chrXIV 333265 . G A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.899;DP=409;Dels=0.00;FS=100.373;HaplotypeScore=29.9780;MLEAC=1;MLEAF=0.500;MQ=35.55;MQ0=0;MQRankSum=-7.291;QD=0.04;ReadPosRankSum=2.171;SB=-1.381e+03 GT:AD:DP:GQ:PL 0/1:223,186:409:48:48,0,3157 chrXIV 333268 . G A 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DP=405;Dels=0.00;FS=91.299;HaplotypeScore=21.6078;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=0;MQRankSum=-6.342;QD=0.29;ReadPosRankSum=3.376;SB=-1.530e+03 GT:AD:DP:GQ:PL 0/1:211,194:405:99:148,0,2776 chrXIV 333289 . G A 2029 filter AC=2;AF=1.00;AN=2;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=494.8681;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=5.05;SB=-5.431e+03 GT:AD:DP:GQ:PL 1/1:0,402:402:99:2062,210,0 chrXIV 333310 . A G 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.891;DP=463;Dels=0.00;FS=10.720;HaplotypeScore=268.1888;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=-0.294;QD=0.32;ReadPosRankSum=-8.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:407,55:463:99:179,0,1054 chrXIV 333313 . A G 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;DP=457;Dels=0.00;FS=27.727;HaplotypeScore=172.2098;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=1.643;QD=0.72;ReadPosRankSum=-8.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:387,70:457:99:361,0,1038 chrXIV 333328 . A G 1331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DP=405;Dels=0.00;FS=37.200;HaplotypeScore=294.5342;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=0;MQRankSum=-0.334;QD=3.29;ReadPosRankSum=-3.228;SB=-1.233e+03 GT:AD:DP:GQ:PL 0/1:219,186:405:26:1361,0,26 chrXIV 333334 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;DP=347;Dels=0.00;FS=39.106;HaplotypeScore=291.0290;MLEAC=1;MLEAF=0.500;MQ=34.09;MQ0=0;MQRankSum=-1.909;QD=0.04;ReadPosRankSum=-13.372;SB=-4.420e+02 GT:AD:DP:GQ:PL 0/1:243,103:347:42:42,0,1437 chrXIV 333367 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;QD=12.42;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:3089,327,0 chrXIV 333373 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=14.45;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3339,351,0 chrXIV 333469 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=25.20;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4561,454,0 chrXIV 333748 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.234;QD=26.12;ReadPosRankSum=1.707;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3630,376,0 chrXIV 333895 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.81;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2496,247,0 chrXIV 333907 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.29;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2596,264,0 chrXIV 336941 . G A 5789.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.43;SB=-3.717e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:5789,604,0 chrXIV 336952 . A G 5643.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=10.0379;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.26;SB=-3.573e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:5643,574,0 chrXIV 337016 . A G 5382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.241;DP=255;Dels=0.00;FS=22.204;HaplotypeScore=18.1279;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.239;QD=21.11;ReadPosRankSum=4.506;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:7,244:255:99:5382,553,0 chrXIV 337051 . C T 6051.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.2297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.00;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6051,610,0 chrXIV 337166 . A G 5709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.450;QD=21.71;ReadPosRankSum=1.679;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5709,586,0 chrXIV 337563 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.75;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4607,463,0 chrXIV 338243 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.130;QD=25.87;ReadPosRankSum=1.614;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3855,388,0 chrXIV 338424 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.58;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4519,445,0 chrXIV 340079 . A G 5779.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.57;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5779,598,0 chrXIV 340447 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3002;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.73;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3602,364,0 chrXIV 341764 . G C 4497.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.45;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4497,469,0 chrXIV 345125 . T C 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.133;QD=25.95;ReadPosRankSum=1.665;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5424,556,0 chrXIV 346115 . A T 4881.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.9289;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.92;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4881,499,0 chrXIV 347475 . C G 1497 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.12;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1530,156,0 chrXIV 347576 . A C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.732;QD=23.76;ReadPosRankSum=1.669;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1340,135,0 chrXIV 347728 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2222,219,0 chrXIV 348697 . G C 3646.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.42;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3646,364,0 chrXIV 350305 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.775;DP=223;Dels=0.00;FS=12.012;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.331;QD=22.72;ReadPosRankSum=3.803;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:5,217:223:99:5067,523,0 chrXIV 350676 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=127;Dels=0.00;FS=7.527;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.230;QD=24.66;ReadPosRankSum=2.410;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:3165,319,0 chrXIV 350778 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=22.7612;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.44;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3816,376,0 chrXIV 354062 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3411,337,0 chrXIV 354131 . G C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.51;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3469,358,0 chrXIV 356361 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.07;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3686,364,0 chrXIV 356370 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.86;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3887,382,0 chrXIV 356409 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.185;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.934;QD=22.63;ReadPosRankSum=1.709;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3485,355,0 chrXIV 356637 . G T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.61;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3970,409,0 chrXIV 357346 . C T 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.074;QD=16.06;ReadPosRankSum=2.219;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2426,305,0 chrXIV 357348 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.483;QD=15.79;ReadPosRankSum=2.302;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2402,302,0 chrXIV 358507 . G C 6640.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.71;SB=-3.634e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:6640,679,0 chrXIV 358519 . C G 6062.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.05;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:6062,631,0 chrXIV 358643 . A G 5751.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.0851;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.37;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5751,592,0 chrXIV 361529 . C A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=24.28;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3739,370,0 chrXIV 361584 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.380;QD=19.31;ReadPosRankSum=1.703;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2331,243,0 chrXIV 361589 . A G 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.557;QD=20.42;ReadPosRankSum=1.672;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2402,252,0 chrXIV 361814 . C A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3062;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=27.19;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3779,370,0 chrXIV 362413 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2941,292,0 chrXIV 362544 . C A 2515 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2548,261,0 chrXIV 362826 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.61;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2907,292,0 chrXIV 363496 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;DP=115;Dels=0.00;FS=3.032;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=2.000;QD=25.97;ReadPosRankSum=2.386;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3020,280,0 chrXIV 363861 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=25.63;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3460,346,0 chrXIV 363907 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.7002;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=27.04;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3197,325,0 chrXIV 364966 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=26.02;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3279,322,0 chrXIV 365714 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.41;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4727,472,0 chrXIV 366158 . G T 6396.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.2306;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.08;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:6396,652,0 chrXIV 366458 . C A 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;DP=110;Dels=0.00;FS=6.552;HaplotypeScore=13.7516;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.861;QD=21.02;ReadPosRankSum=1.175;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2345,218,0 chrXIV 366581 . G T 2998 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.06;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3031,307,0 chrXIV 366593 . A C 3015 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.69;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3048,310,0 chrXIV 366896 . C A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.18;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4111,409,0 chrXIV 367094 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.7991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.48;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3148,330,0 chrXIV 367520 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=5.428;HaplotypeScore=15.3810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.097;QD=24.94;ReadPosRankSum=1.713;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4465,463,0 chrXIV 367843 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3957,385,0 chrXIV 368183 . C T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.6254;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.96;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4553,445,0 chrXIV 369029 . T A 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=3.337;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.828;QD=26.43;ReadPosRankSum=1.682;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3647,364,0 chrXIV 370084 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.808;QD=24.84;ReadPosRankSum=1.706;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3378,340,0 chrXIV 370870 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.7609;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.35;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4532,448,0 chrXIV 371209 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.56;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4192,433,0 chrXIV 371336 . C G 4912.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.29;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4912,499,0 chrXIV 371753 . A T 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.953;QD=25.92;ReadPosRankSum=1.705;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3344,334,0 chrXIV 372259 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3392,331,0 chrXIV 372376 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.38;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3608,361,0 chrXIV 373134 . A G 5011.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5011,499,0 chrXIV 373632 . T A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.557;DP=180;Dels=0.00;FS=1.425;HaplotypeScore=157.1993;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=2.690;QD=0.07;ReadPosRankSum=-4.252;SB=-1.718e+02 GT:AD:DP:GQ:PL 1/1:172,8:180:6:44,6,0 chrXIV 373766 . C A 5954.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.11;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:5954,589,0 chrXIV 373799 . A G 6488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=254;Dels=0.00;FS=5.287;HaplotypeScore=12.4263;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.513;QD=25.54;ReadPosRankSum=1.677;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,249:254:99:6488,679,0 chrXIV 374054 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.9490;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.798;QD=22.06;ReadPosRankSum=1.390;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3375,337,0 chrXIV 374078 . G C 2427 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.68;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2460,246,0 chrXIV 374659 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=17.7798;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3754,382,0 chrXIV 376313 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3388,334,0 chrXIV 376490 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.772;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.538;QD=25.17;ReadPosRankSum=1.712;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4405,451,0 chrXIV 377887 . G T 5363.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.91;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5363,532,0 chrXIV 380619 . T A 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=111;Dels=0.00;FS=7.334;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.474;QD=23.53;ReadPosRankSum=2.405;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2645,262,0 chrXIV 383213 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.76;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3889,391,0 chrXIV 383709 . A T 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=120;Dels=0.00;FS=2.813;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.154;QD=23.27;ReadPosRankSum=2.409;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2826,288,0 chrXIV 385702 . A T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.58;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3987,406,0 chrXIV 388136 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2440,243,0 chrXIV 389873 . A T 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=6.849;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.431;QD=26.78;ReadPosRankSum=2.361;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2256,219,0 chrXIV 389979 . G T 2714 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2747,274,0 chrXIV 390263 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.61;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3790,382,0 chrXIV 390357 . A T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.87;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4004,394,0 chrXIV 390377 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.16;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3659,367,0 chrXIV 390590 . G A 5463.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=25.53;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5463,547,0 chrXIV 390614 . G C 5666.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.74;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5666,589,0 chrXIV 390788 . C T 4930.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.70;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4930,514,0 chrXIV 390845 . G A 5784.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=27.03;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5784,571,0 chrXIV 390893 . C T 5438.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.2662;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.41;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5438,544,0 chrXIV 390954 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.748;QD=24.49;ReadPosRankSum=1.714;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4654,484,0 chrXIV 391118 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.27;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4732,475,0 chrXIV 391299 . G A 7180.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.6481;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=26.40;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:7180,715,0 chrXIV 391358 . G C 7088.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=7.5692;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.71;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,295:299:99:7088,724,0 chrXIV 391364 . T C 6901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=300;Dels=0.00;FS=8.498;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.888;QD=23.00;ReadPosRankSum=3.379;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:4,295:300:99:6901,709,0 chrXIV 391568 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.3068;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=14.93;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3523,366,0 chrXIV 391590 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=233;Dels=0.00;FS=4.752;HaplotypeScore=16.5601;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.786;QD=17.50;ReadPosRankSum=1.717;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,226:233:99:4077,421,0 chrXIV 391634 . G A 5500.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.3851;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.09;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5500,547,0 chrXIV 391752 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=26.43;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4256,433,0 chrXIV 391796 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.69;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3449,369,0 chrXIV 391817 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.72;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2972,309,0 chrXIV 391829 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.58;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3087,307,0 chrXIV 391871 . A G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.579;QD=18.49;ReadPosRankSum=1.710;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2954,312,0 chrXIV 391904 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.88;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3610,364,0 chrXIV 391916 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.54;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3899,391,0 chrXIV 391961 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.21;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3107,313,0 chrXIV 391970 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.011;QD=17.66;ReadPosRankSum=1.709;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2753,285,0 chrXIV 392063 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.044;QD=22.98;ReadPosRankSum=1.703;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2722,276,0 chrXIV 392076 . G C 3087 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.75;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3120,321,0 chrXIV 392155 . A T 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=15.2931;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.084;QD=23.78;ReadPosRankSum=1.704;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2958,300,0 chrXIV 392533 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.06;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3144,330,0 chrXIV 392559 . A G 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=165;Dels=0.00;FS=15.140;HaplotypeScore=6.6376;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.749;QD=26.97;ReadPosRankSum=1.939;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:4450,439,0 chrXIV 392589 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8413;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.89;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4206,427,0 chrXIV 392734 . A G 6380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.426;DP=249;Dels=0.00;FS=14.417;HaplotypeScore=13.1978;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.123;QD=25.62;ReadPosRankSum=3.419;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:4,244:249:99:6380,658,0 chrXIV 393022 . T C 4997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=215;Dels=0.00;FS=6.059;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.910;QD=23.24;ReadPosRankSum=2.920;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:3,210:215:99:4997,514,0 chrXIV 393050 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.37;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3390,360,0 chrXIV 393053 . A C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=167;Dels=0.00;FS=6.095;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.006;QD=18.58;ReadPosRankSum=2.934;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3136,321,0 chrXIV 393101 . T G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0036;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.090;QD=19.19;ReadPosRankSum=1.592;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3358,346,0 chrXIV 393110 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.29;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3833,379,0 chrXIV 393350 . T C 2968 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.01;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3001,301,0 chrXIV 393398 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.513;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.352;QD=22.27;ReadPosRankSum=1.705;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2883,294,0 chrXIV 393425 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.71;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2962,295,0 chrXIV 393483 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7372;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.75;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2860,289,0 chrXIV 393703 . G A 7171.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=17.5358;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.36;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:7171,718,0 chrXIV 393812 . G A 7698.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=23.5656;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.27;SB=-3.843e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7698,760,0 chrXIV 393863 . C T 7990.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=17.5415;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.46;SB=-4.185e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:7990,796,0 chrXIV 393905 . T C 8983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=354;Dels=0.00;FS=10.236;HaplotypeScore=18.7426;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.413;QD=25.38;ReadPosRankSum=2.935;SB=-4.493e+03 GT:AD:DP:GQ:PL 1/1:3,349:353:99:8983,887,0 chrXIV 394023 . C G 9603.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=32.8998;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.59;SB=-4.105e+03 GT:AD:DP:GQ:PL 1/1:0,395:407:99:9603,1006,0 chrXIV 394076 . G A 9868.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=20.4504;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.92;SB=-4.657e+03 GT:AD:DP:GQ:PL 1/1:0,395:396:99:9868,989,0 chrXIV 394139 . G A 6936.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=8.7326;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.47;SB=-3.598e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:6936,709,0 chrXIV 394161 . C T 5558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=4.8024;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.948;QD=16.95;ReadPosRankSum=-0.026;SB=-4.332e+03 GT:AD:DP:GQ:PL 1/1:1,326:328:99:5558,559,0 chrXIV 394167 . A G 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=329;Dels=0.00;FS=12.175;HaplotypeScore=7.3334;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.769;QD=16.11;ReadPosRankSum=3.408;SB=-3.980e+03 GT:AD:DP:GQ:PL 1/1:4,323:329:99:5301,544,0 chrXIV 394187 . T C 5106.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=9.2277;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=14.26;SB=-4.144e+03 GT:AD:DP:GQ:PL 1/1:0,358:358:99:5106,514,0 chrXIV 394241 . G A 5711.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=10.2144;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=17.31;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:5711,598,0 chrXIV 394392 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.63;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2635,270,0 chrXIV 394440 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.81;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2046,201,0 chrXIV 394558 . A T 835 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:868,90,0 chrXIV 394591 . G A 742 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:78:775,78,0 chrXIV 395169 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=185;Dels=0.00;FS=2.558;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.483;QD=23.65;ReadPosRankSum=2.961;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:3,178:185:99:4375,448,0 chrXIV 395338 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.974;QD=24.41;ReadPosRankSum=1.656;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3393,351,0 chrXIV 395542 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3790,379,0 chrXIV 395701 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3947,394,0 chrXIV 395734 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.00;FS=3.119;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.732;QD=24.48;ReadPosRankSum=1.711;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:4039,409,0 chrXIV 395841 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3630,358,0 chrXIV 396544 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.74;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4368,436,0 chrXIV 396569 . T C 4295.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.54;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4295,442,0 chrXIV 396664 . A G 4969.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.88;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4969,496,0 chrXIV 396730 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4524;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.61;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3944,391,0 chrXIV 396880 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=16.5266;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.707;QD=24.04;ReadPosRankSum=1.248;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3293,345,0 chrXIV 398211 . A G 2990 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.65;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3023,304,0 chrXIV 398280 . A G 2359 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.83;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2392,246,0 chrXIV 398341 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=26.12;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2384,234,0 chrXIV 398440 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.12;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1287,129,0 chrXIV 398505 . A G 558 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=12.7344;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.93;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:60:591,60,0 chrXIV 398753 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=26.23;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2945,289,0 chrXIV 398966 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3294,345,0 chrXIV 399956 . T G 3877.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3877,397,0 chrXIV 400003 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3185,322,0 chrXIV 400049 . T C 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.030;DP=111;Dels=0.00;FS=15.260;HaplotypeScore=11.7102;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.115;QD=20.27;ReadPosRankSum=3.378;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2283,234,0 chrXIV 400328 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=9.669;HaplotypeScore=10.1941;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.310;QD=27.00;ReadPosRankSum=2.379;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3753,370,0 chrXIV 400486 . C T 5685.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.15;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5685,583,0 chrXIV 400788 . G T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2742;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.05;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3367,340,0 chrXIV 401015 . T A 2748 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.90;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2781,282,0 chrXIV 401035 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.532;QD=21.58;ReadPosRankSum=1.698;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2256,234,0 chrXIV 401251 . A T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.96;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3297,322,0 chrXIV 401891 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.57;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2539,255,0 chrXIV 402079 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=2.932;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.458;QD=22.80;ReadPosRankSum=2.410;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2883,294,0 chrXIV 402101 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.62;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3160,319,0 chrXIV 402194 . A T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.36;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3693,361,0 chrXIV 402308 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=26.18;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4451,454,0 chrXIV 402455 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=25.15;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3202,327,0 chrXIV 402461 . A C 3105 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.88;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3138,324,0 chrXIV 402769 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.204;QD=24.43;ReadPosRankSum=1.711;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:4080,415,0 chrXIV 402781 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.56;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4052,412,0 chrXIV 402971 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=161;Dels=0.00;FS=7.270;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.588;QD=24.93;ReadPosRankSum=2.404;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:4014,418,0 chrXIV 403003 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.94;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3326,337,0 chrXIV 403093 . A T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.93;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3411,337,0 chrXIV 403098 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.11;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3483,352,0 chrXIV 403146 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=2.948;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-1.187;QD=20.67;ReadPosRankSum=2.422;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3679,379,0 chrXIV 403153 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=186;Dels=0.00;FS=5.909;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.573;QD=19.21;ReadPosRankSum=2.930;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3573,358,0 chrXIV 403294 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.23;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3926,406,0 chrXIV 403450 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.22;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3214,331,0 chrXIV 403835 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.79;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3356,337,0 chrXIV 403844 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.22;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3127,318,0 chrXIV 403864 . A T 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.194;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.625;QD=18.41;ReadPosRankSum=1.671;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3144,313,0 chrXIV 404000 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.11;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3906,385,0 chrXIV 404051 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=20.3264;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.21;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4285,451,0 chrXIV 404479 . C T 5274.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.36;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5274,523,0 chrXIV 404620 . C T 5266.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.69;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5266,517,0 chrXIV 404770 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.6238;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.24;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2988,301,0 chrXIV 404941 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.88;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1932,195,0 chrXIV 404995 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.686;QD=25.95;ReadPosRankSum=1.686;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1979,198,0 chrXIV 405028 . T A 1400 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.95;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1433,141,0 chrXIV 405043 . A C 1551 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.16;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1584,159,0 chrXIV 405756 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.561;QD=25.46;ReadPosRankSum=1.708;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3615,361,0 chrXIV 405795 . A C 2497 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=20.47;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2530,255,0 chrXIV 405802 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=19.29;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2367,246,0 chrXIV 405841 . T A 1909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=3.005;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-1.498;QD=15.40;ReadPosRankSum=2.331;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:1942,201,0 chrXIV 405847 . T C 1976 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7763;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=16.61;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2009,213,0 chrXIV 405849 . T C 2074 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.461;HaplotypeScore=7.3005;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.643;QD=15.71;ReadPosRankSum=2.319;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2107,210,0 chrXIV 405961 . A T 2661 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.12;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2694,273,0 chrXIV 406068 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=22.77;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3062,307,0 chrXIV 406074 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.75;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3036,301,0 chrXIV 406133 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9033;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.42;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3261,328,0 chrXIV 406202 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.63;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3435,346,0 chrXIV 406273 . C T 733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.229;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.490;QD=4.21;ReadPosRankSum=1.430;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:96:766,96,0 chrXIV 406274 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.273;QD=4.92;ReadPosRankSum=1.712;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:884,108,0 chrXIV 406753 . A T 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=5.315;HaplotypeScore=7.1825;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.304;QD=27.15;ReadPosRankSum=1.712;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4642,454,0 chrXIV 406783 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.55;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4114,409,0 chrXIV 407114 . A T 3145 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3178,327,0 chrXIV 407152 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.225;QD=25.40;ReadPosRankSum=1.706;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3353,340,0 chrXIV 407285 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.77;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4303,433,0 chrXIV 408124 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3965,403,0 chrXIV 408377 . A G 6654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=270;Dels=0.00;FS=4.548;HaplotypeScore=20.8851;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.386;QD=24.64;ReadPosRankSum=1.719;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,266:270:99:6654,685,0 chrXIV 408505 . G A 5388.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.66;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5388,532,0 chrXIV 408508 . G A 5355.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.54;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5355,532,0 chrXIV 408672 . G A 6176.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=24.5209;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.85;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6176,616,0 chrXIV 408786 . C T 6916.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.03;SB=-4.040e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6916,703,0 chrXIV 408945 . T C 5601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=243;Dels=0.00;FS=4.718;HaplotypeScore=11.8489;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.133;QD=23.05;ReadPosRankSum=1.675;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5601,562,0 chrXIV 409114 . G A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.1860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4580,454,0 chrXIV 409315 . T G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.454;QD=25.21;ReadPosRankSum=1.714;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4764,496,0 chrXIV 409622 . A G 5014.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.45;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5014,529,0 chrXIV 409919 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.068;QD=23.54;ReadPosRankSum=2.412;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3070,310,0 chrXIV 410245 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.51;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4031,412,0 chrXIV 410737 . A G 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=253;Dels=0.00;FS=2.992;HaplotypeScore=14.3828;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.150;QD=21.59;ReadPosRankSum=2.430;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5461,559,0 chrXIV 410746 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.851;QD=21.26;ReadPosRankSum=0.851;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:1,235:238:99:5060,483,0 chrXIV 410941 . A G 5854.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.5618;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=26.25;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5854,586,0 chrXIV 411040 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.83;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4262,436,0 chrXIV 411353 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2793,294,0 chrXIV 411544 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3566,367,0 chrXIV 411667 . T A 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=5.103;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.070;QD=25.18;ReadPosRankSum=1.707;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3425,337,0 chrXIV 411928 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=25.33;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4230,421,0 chrXIV 411943 . G C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1026;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.38;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3858,403,0 chrXIV 412014 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5584;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.26;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3517,346,0 chrXIV 412273 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0922;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.28;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3067,301,0 chrXIV 412369 . A T 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.977;QD=19.67;ReadPosRankSum=1.654;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2649,276,0 chrXIV 412406 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=19.48;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2449,243,0 chrXIV 412417 . G A 2326 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=19.38;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2359,234,0 chrXIV 412424 . G A 2030 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=17.96;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2063,219,0 chrXIV 412425 . G A 2151 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.21;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2184,219,0 chrXIV 412570 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=24.95;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2503,264,0 chrXIV 412585 . C G 2126 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=20.25;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2159,237,0 chrXIV 412586 . A G 1938 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=-1.532;QD=18.63;ReadPosRankSum=1.699;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1971,228,0 chrXIV 412587 . T A 1940 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=6.751;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=-0.639;QD=18.30;ReadPosRankSum=2.310;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1973,228,0 chrXIV 412736 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8572;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.91;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3826,391,0 chrXIV 412763 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.42;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4245,421,0 chrXIV 413103 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.76;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2884,297,0 chrXIV 413294 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.45;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1323,129,0 chrXIV 413314 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.63;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1309,135,0 chrXIV 413686 . G T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=28.06;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3260,319,0 chrXIV 414010 . T C 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=227;Dels=0.00;FS=5.474;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.578;QD=24.17;ReadPosRankSum=2.862;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5487,565,0 chrXIV 414025 . G A 5345.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.9925;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.86;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5345,526,0 chrXIV 414277 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=26.32;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3922,397,0 chrXIV 414427 . C T 4950.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.78;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4950,487,0 chrXIV 414682 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.9763;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.24;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4752,487,0 chrXIV 414951 . T A 774 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.20;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:78:807,78,0 chrXIV 414981 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.58;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:84:824,84,0 chrXIV 415006 . T A 499 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=13.13;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:63:532,63,0 chrXIV 415008 . A T 507 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=13.70;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:63:540,63,0 chrXIV 415101 . T C 89.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.452;DP=21;Dels=0.00;FS=13.835;HaplotypeScore=6.7906;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;MQRankSum=2.060;QD=4.25;ReadPosRankSum=-0.352;SB=-1.830e+01 GT:AD:DP:GQ:PL 1/1:3,18:21:15:122,15,0 chrXIV 415125 . C A 1066 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.17;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1099,117,0 chrXIV 415134 . A G 1102 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.04;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1135,120,0 chrXIV 415261 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.53;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2098,207,0 chrXIV 416309 . C A 667 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.52;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:72:700,72,0 chrXIV 416379 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.87;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1348,141,0 chrXIV 417421 . C T 686 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:719,72,0 chrXIV 418267 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.03;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2937,292,0 chrXIV 418300 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.029;QD=23.78;ReadPosRankSum=1.406;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3281,337,0 chrXIV 418767 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.31;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2767,277,0 chrXIV 418815 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2332,240,0 chrXIV 420063 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.439;QD=25.30;ReadPosRankSum=1.666;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3998,415,0 chrXIV 420940 . C A 3107 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.0953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3140,310,0 chrXIV 422746 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.486;QD=24.18;ReadPosRankSum=1.691;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4087,418,0 chrXIV 425654 . A G 6542.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.38;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6542,658,0 chrXIV 427278 . A G 5216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=239;Dels=0.00;FS=2.565;HaplotypeScore=14.9193;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.843;QD=21.82;ReadPosRankSum=2.945;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:3,234:239:99:5216,541,0 chrXIV 427451 . A G 6183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=254;Dels=0.00;FS=10.148;HaplotypeScore=18.8239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.461;QD=24.34;ReadPosRankSum=2.411;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:6183,643,0 chrXIV 428693 . C T 5359.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.7102;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5359,544,0 chrXIV 431063 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0375;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.23;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4344,442,0 chrXIV 433148 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3572,352,0 chrXIV 434120 . G T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.07;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4838,502,0 chrXIV 435739 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=136;Dels=0.00;FS=4.337;HaplotypeScore=10.3978;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.341;QD=25.56;ReadPosRankSum=1.706;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:3476,360,0 chrXIV 437914 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:4045,397,0 chrXIV 439626 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3242,325,0 chrXIV 442265 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.48;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4528,442,0 chrXIV 442390 . C A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=25.74;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3423,331,0 chrXIV 442392 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=25.16;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3296,331,0 chrXIV 442518 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0758;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.86;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2870,300,0 chrXIV 442648 . T A 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=0.859;QD=20.60;ReadPosRankSum=1.704;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2567,258,0 chrXIV 442653 . A G 2468 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=20.23;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2501,252,0 chrXIV 442660 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=20.18;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2414,237,0 chrXIV 442665 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=18.44;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2393,237,0 chrXIV 442716 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=17.53;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2557,258,0 chrXIV 442736 . C A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.59;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3562,358,0 chrXIV 442993 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.952;DP=194;Dels=0.00;FS=5.205;HaplotypeScore=11.7325;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=1.449;QD=21.36;ReadPosRankSum=3.058;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:4,187:194:99:4143,389,0 chrXIV 443003 . A T 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.405;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.9392;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=2;MQRankSum=0.327;QD=24.03;ReadPosRankSum=0.385;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4374,406,0 chrXIV 443566 . A G 2914 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2947,306,0 chrXIV 444667 . G T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.969;DP=127;Dels=0.02;FS=107.992;HaplotypeScore=26.6639;MLEAC=1;MLEAF=0.500;MQ=55.54;MQ0=0;MQRankSum=0.804;QD=0.77;ReadPosRankSum=-1.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,33:125:99:128,0,834 chrXIV 444670 . A T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.159;DP=126;Dels=0.01;FS=158.848;HaplotypeScore=28.1177;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=0;MQRankSum=-1.004;QD=0.78;ReadPosRankSum=-2.502;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,42:125:99:128,0,776 chrXIV 447382 . G T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.3958;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.00;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4737,475,0 chrXIV 448975 . C G 5274.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.25;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5274,550,0 chrXIV 448992 . C G 4967.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.70;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4967,523,0 chrXIV 449114 . G A 6416.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.40;SB=-3.592e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6416,670,0 chrXIV 449640 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2360,243,0 chrXIV 450995 . C A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.8633;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.47;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3296,322,0 chrXIV 452401 . G A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.81;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3746,388,0 chrXIV 453937 . C T 6086.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.7429;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.46;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6086,592,0 chrXIV 456179 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3328,331,0 chrXIV 456295 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4148;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.08;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3010,298,0 chrXIV 456306 . A G 2738 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.22;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2771,285,0 chrXIV 456437 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.87;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3932,388,0 chrXIV 457243 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=4.992;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.355;QD=24.77;ReadPosRankSum=1.698;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2535,261,0 chrXIV 457485 . G A 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.170;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.014;QD=23.54;ReadPosRankSum=-0.765;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2646,242,0 chrXIV 458514 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.49;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2640,288,0 chrXIV 462234 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2705,279,0 chrXIV 463554 . A T 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=114;Dels=0.00;FS=6.697;HaplotypeScore=7.1816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.723;QD=24.53;ReadPosRankSum=2.363;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2829,256,0 chrXIV 463775 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.77;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3246,328,0 chrXIV 463940 . T A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3247,319,0 chrXIV 463992 . C G 2825 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2328;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.97;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2858,297,0 chrXIV 465005 . C T 5036.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9732;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.83;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5036,493,0 chrXIV 465187 . A T 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.5959;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.204;QD=24.50;ReadPosRankSum=2.613;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3528,343,0 chrXIV 466588 . T G 7966.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=17.3255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:0,316:322:99:7966,829,0 chrXIV 467028 . A G 2193 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2226,222,0 chrXIV 467219 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2283,225,0 chrXIV 468488 . A G 3059 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3092,307,0 chrXIV 469224 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.346;QD=23.29;ReadPosRankSum=1.701;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2641,270,0 chrXIV 469870 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=2.748;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.164;QD=23.87;ReadPosRankSum=2.307;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1704,177,0 chrXIV 470301 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.95;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:4023,397,0 chrXIV 470330 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=27.34;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4566,457,0 chrXIV 470440 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.94;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3002,306,0 chrXIV 470844 . A G 2401 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.27;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2434,246,0 chrXIV 472579 . G T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.092;DP=157;Dels=0.00;FS=22.091;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=1;MQRankSum=-0.625;QD=0.09;ReadPosRankSum=-3.827;SB=-1.338e+02 GT:AD:DP:GQ:PL 1/1:150,7:157:6:45,6,0 chrXIV 472584 . G C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=1;QD=0.08;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:6:44,6,0 chrXIV 473303 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.287;QD=25.71;ReadPosRankSum=2.340;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:3,88:92:99:2398,240,0 chrXIV 473648 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.83;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3590,370,0 chrXIV 477541 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.6403;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.74;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5057,508,0 chrXIV 478701 . A G 5519.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.4583;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.42;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5519,559,0 chrXIV 481081 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.19;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3664,361,0 chrXIV 481755 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.16;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4159,406,0 chrXIV 485704 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.338;QD=24.68;ReadPosRankSum=1.516;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4368,445,0 chrXIV 486859 . T A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.26;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4661,463,0 chrXIV 487250 . G C 5322.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.15;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:5322,535,0 chrXIV 487818 . C T 8331.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=22.0174;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-4.403e+03 GT:AD:DP:GQ:PL 1/1:0,331:333:99:8331,818,0 chrXIV 487935 . C T 5992.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.76;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5992,604,0 chrXIV 488598 . G C 5406.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.0497;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.10;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5406,550,0 chrXIV 492375 . A G 7087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=289;Dels=0.00;FS=10.236;HaplotypeScore=29.3712;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.484;QD=24.52;ReadPosRankSum=2.919;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:3,281:289:99:7087,730,0 chrXIV 493333 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.65;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3405,346,0 chrXIV 495918 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5919;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.69;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4618,457,0 chrXIV 497303 . C G 4827.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.27;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4827,496,0 chrXIV 497844 . A C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=24.04;ReadPosRankSum=1.710;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3846,397,0 chrXIV 498514 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.25;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2749,282,0 chrXIV 499188 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.3926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3987,412,0 chrXIV 499614 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.76;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3611,381,0 chrXIV 500387 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.63;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2742,279,0 chrXIV 500621 . T G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.922;QD=22.80;ReadPosRankSum=1.676;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2883,297,0 chrXIV 500627 . T G 2770 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.34;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2803,288,0 chrXIV 500652 . T A 2425 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.66;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2458,249,0 chrXIV 500701 . T C 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=106;Dels=0.00;FS=8.756;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.862;QD=19.69;ReadPosRankSum=3.340;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:4,101:106:99:2120,216,0 chrXIV 500721 . T C 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.365;QD=20.23;ReadPosRankSum=1.637;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2278,240,0 chrXIV 500742 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.609;QD=20.93;ReadPosRankSum=1.701;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2356,234,0 chrXIV 500767 . A G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=97.2617;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.535;QD=19.75;ReadPosRankSum=1.701;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2225,234,0 chrXIV 501214 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2886,297,0 chrXIV 501247 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.63;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2680,265,0 chrXIV 501338 . C G 2726 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.70;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2759,282,0 chrXIV 501452 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4261;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.990;QD=22.91;ReadPosRankSum=1.701;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2599,273,0 chrXIV 501463 . C A 2659 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.53;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2692,267,0 chrXIV 501546 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.57;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3792,382,0 chrXIV 501563 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=176;Dels=0.00;FS=10.994;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.258;QD=21.64;ReadPosRankSum=2.394;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3809,394,0 chrXIV 501765 . C T 5885.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.3973;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.12;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5885,577,0 chrXIV 501824 . C A 6389.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=19.5963;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.15;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6389,628,0 chrXIV 501883 . T C 5834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.1305;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.166;QD=23.06;ReadPosRankSum=1.718;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5834,601,0 chrXIV 502079 . G A 7281.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=21.5278;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.35;SB=-3.770e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:7281,766,0 chrXIV 502292 . G C 6899.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=16.4234;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.47;SB=-3.967e+03 GT:AD:DP:GQ:PL 1/1:0,304:307:99:6899,733,0 chrXIV 502322 . A G 7502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=335;Dels=0.00;FS=8.808;HaplotypeScore=18.4600;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.008;QD=22.39;ReadPosRankSum=2.848;SB=-4.176e+03 GT:AD:DP:GQ:PL 1/1:4,328:335:99:7502,784,0 chrXIV 502486 . C T 5869.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.7503;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.98;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5869,580,0 chrXIV 502498 . C T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.53;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5533,547,0 chrXIV 502729 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=4.330;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.046;QD=23.16;ReadPosRankSum=1.639;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4354,465,0 chrXIV 502885 . A G 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=100;Dels=0.00;FS=4.911;HaplotypeScore=9.1070;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.712;QD=19.10;ReadPosRankSum=3.685;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1943,201,0 chrXIV 502975 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=11.8978;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.59;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1267,129,0 chrXIV 503187 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=27.54;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2374,234,0 chrXIV 503261 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.98;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2813,283,0 chrXIV 503520 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.18;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2828,280,0 chrXIV 503659 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=25.55;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3073,315,0 chrXIV 503888 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=16.86;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2343,246,0 chrXIV 504614 . A G 4566.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4566,448,0 chrXIV 504677 . G A 5315.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.12;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5315,520,0 chrXIV 504830 . G A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4432,448,0 chrXIV 505410 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.34;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3345,343,0 chrXIV 505441 . C A 2996 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.24;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3029,304,0 chrXIV 506144 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5193;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.55;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4496,451,0 chrXIV 506920 . G A 3106 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.35;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3139,310,0 chrXIV 507053 . T G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.183;QD=21.88;ReadPosRankSum=1.698;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2243,231,0 chrXIV 507058 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.87;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2307,222,0 chrXIV 507430 . G T 1477 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=18.01;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1510,147,0 chrXIV 507431 . A T 1459 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=-0.169;QD=17.79;ReadPosRankSum=1.690;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1492,147,0 chrXIV 507432 . A T 1463 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=6.085;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-1.338;QD=18.06;ReadPosRankSum=2.913;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1496,147,0 chrXIV 507433 . A C 1435 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=17.72;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1468,150,0 chrXIV 507696 . C G 4911.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.40;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4911,499,0 chrXIV 508757 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2254,225,0 chrXIV 509173 . C A 2908 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1278;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.72;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2941,295,0 chrXIV 509580 . G T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3302,340,0 chrXIV 510030 . G C 4203.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.60;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4203,418,0 chrXIV 510823 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.1250;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=27.31;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:4069,412,0 chrXIV 511616 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3781,388,0 chrXIV 511916 . C T 6134.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.56;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:6134,619,0 chrXIV 513243 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=7.274;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.952;QD=25.09;ReadPosRankSum=2.333;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4266,424,0 chrXIV 513525 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=129;Dels=0.00;FS=3.040;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.471;QD=23.95;ReadPosRankSum=2.392;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3123,310,0 chrXIV 513783 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3407,334,0 chrXIV 513927 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=8.472;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.185;QD=25.74;ReadPosRankSum=2.401;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3964,397,0 chrXIV 514134 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=18.2857;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.60;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4206,415,0 chrXIV 515028 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4781;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.11;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4218,424,0 chrXIV 515081 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=24.32;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4062,400,0 chrXIV 515089 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.70;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3792,382,0 chrXIV 515393 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4206;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.50;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3206,327,0 chrXIV 515478 . C A 2911 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.76;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2944,292,0 chrXIV 515537 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2078,213,0 chrXIV 515602 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.55;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2788,276,0 chrXIV 516034 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;MQRankSum=-0.726;QD=22.46;ReadPosRankSum=1.713;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4020,412,0 chrXIV 516909 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=27.53;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1547,153,0 chrXIV 517269 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.541;HaplotypeScore=5.5413;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.487;QD=24.49;ReadPosRankSum=1.671;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2800,291,0 chrXIV 517634 . G A 5004.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4393;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.40;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5004,520,0 chrXIV 517970 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.80;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:1009,102,0 chrXIV 518602 . G T 5729.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.8847;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.69;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5729,574,0 chrXIV 518686 . G A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.5487;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.08;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5441,532,0 chrXIV 523665 . C T 87.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=1;MQRankSum=1.470;QD=6.25;ReadPosRankSum=1.470;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:2,12:14:12:120,12,0 chrXIV 523677 . C T 114.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=1;MQRankSum=1.519;QD=6.72;ReadPosRankSum=0.868;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:2,15:17:15:147,15,0 chrXIV 523680 . A T 100.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=1;MQRankSum=1.531;QD=5.57;ReadPosRankSum=0.714;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:2,16:18:15:133,15,0 chrXIV 523685 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.964;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;MQRankSum=1.542;QD=0.99;ReadPosRankSum=0.578;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,17:19:6:50,6,0 chrXIV 523686 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;MQRankSum=1.542;QD=0.99;ReadPosRankSum=0.578;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,17:19:6:50,6,0 chrXIV 523704 . T A 117.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;MQRankSum=1.542;QD=6.17;ReadPosRankSum=-0.385;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:15:150,15,0 chrXIV 523707 . C T 118.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;MQRankSum=1.542;QD=6.22;ReadPosRankSum=-1.542;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:15:151,15,0 chrXIV 523713 . C T 125.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=1;MQRankSum=1.561;QD=5.96;ReadPosRankSum=-1.561;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,19:21:15:158,15,0 chrXIV 523719 . T C 111.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.273;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=1;MQRankSum=1.146;QD=4.64;ReadPosRankSum=0.491;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,21:24:15:144,15,0 chrXIV 523722 . T C 118.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=1;MQRankSum=1.445;QD=4.73;ReadPosRankSum=-1.011;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,23:25:15:151,15,0 chrXIV 523728 . A T 139.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=1;MQRankSum=1.445;QD=5.57;ReadPosRankSum=-1.011;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,23:25:18:172,18,0 chrXIV 523731 . G A 142.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=1;MQRankSum=1.467;QD=5.26;ReadPosRankSum=-1.067;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,25:27:18:175,18,0 chrXIV 523734 . C T 179.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=1;MQRankSum=1.476;QD=6.40;ReadPosRankSum=-0.835;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:2,26:28:21:212,21,0 chrXIV 523878 . C T 906 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=11;QD=10.92;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:96:939,96,0 chrXIV 523953 . A G 2562 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=17;QD=22.28;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2595,258,0 chrXIV 525219 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=24.59;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4426,463,0 chrXIV 525453 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=3.584;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=-1.402;QD=20.08;ReadPosRankSum=1.716;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4216,430,0 chrXIV 525472 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=170.6190;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=17.58;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3640,358,0 chrXIV 525484 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=15.85;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3376,331,0 chrXIV 525522 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=15.60;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2935,292,0 chrXIV 525575 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=17.12;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3287,334,0 chrXIV 525960 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.67;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3355,334,0 chrXIV 527014 . A T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.68;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4788,472,0 chrXIV 527071 . C T 5989.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.2258;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.74;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5989,589,0 chrXIV 527275 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.2410;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.00;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4808,472,0 chrXIV 527794 . C T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.86;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4557,457,0 chrXIV 528047 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.712;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.189;QD=22.96;ReadPosRankSum=1.706;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3133,324,0 chrXIV 528195 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3268,328,0 chrXIV 528514 . C T 5974.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.67;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5974,592,0 chrXIV 529082 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3512,358,0 chrXIV 529136 . A G 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=4.267;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.528;QD=25.29;ReadPosRankSum=1.714;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4755,499,0 chrXIV 529937 . T A 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.284;QD=26.28;ReadPosRankSum=1.706;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3521,346,0 chrXIV 532649 . A C 2352 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.76;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2385,249,0 chrXIV 532790 . T A 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=157;Dels=0.00;FS=2.980;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.087;QD=24.80;ReadPosRankSum=2.339;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3893,400,0 chrXIV 533282 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.00;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3058,309,0 chrXIV 533533 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=135;Dels=0.00;FS=11.040;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.105;QD=27.39;ReadPosRankSum=2.918;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3697,376,0 chrXIV 534210 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3400,352,0 chrXIV 534949 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2501,246,0 chrXIV 536942 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.783;QD=22.16;ReadPosRankSum=1.706;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3025,312,0 chrXIV 537552 . T G 5541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.484;QD=24.96;ReadPosRankSum=1.716;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5541,565,0 chrXIV 537637 . A G 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=225;Dels=0.00;FS=2.923;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.391;QD=24.76;ReadPosRankSum=2.417;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5571,556,0 chrXIV 538397 . T G 3623.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3623,361,0 chrXIV 538530 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.49;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3682,370,0 chrXIV 539903 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=27.16;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2749,274,0 chrXIV 540184 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.96;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4129,424,0 chrXIV 540188 . T A 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=193;Dels=0.00;FS=3.411;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.476;QD=21.74;ReadPosRankSum=1.696;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4196,421,0 chrXIV 540589 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.16;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2832,297,0 chrXIV 540811 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.15;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2517,249,0 chrXIV 540838 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.19;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2030,204,0 chrXIV 540985 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.33;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2221,231,0 chrXIV 541056 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.603;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.497;QD=25.99;ReadPosRankSum=1.698;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2684,270,0 chrXIV 541168 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.483;QD=25.25;ReadPosRankSum=1.685;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3737,376,0 chrXIV 541405 . C G 2689 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2722,276,0 chrXIV 541561 . T A 2228 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.45;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2261,228,0 chrXIV 541746 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.70;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4470,433,0 chrXIV 541750 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.11;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4384,445,0 chrXIV 541912 . A G 5929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=230;Dels=0.00;FS=2.899;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.080;QD=25.78;ReadPosRankSum=2.364;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5929,589,0 chrXIV 541942 . A G 5673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.111;DP=229;Dels=0.00;FS=13.588;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.241;QD=24.77;ReadPosRankSum=4.143;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:6,222:229:99:5673,580,0 chrXIV 542034 . A G 4278.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.77;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4278,445,0 chrXIV 542052 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8828;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.09;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4086,427,0 chrXIV 542117 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8732;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.51;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3614,375,0 chrXIV 542157 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.54;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3828,388,0 chrXIV 542570 . G A 5785.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.7797;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.71;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5785,568,0 chrXIV 542627 . T C 6117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=9.4930;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.190;QD=22.16;ReadPosRankSum=1.644;SB=-3.384e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6117,637,0 chrXIV 542645 . C G 5502.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.76;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5502,580,0 chrXIV 542690 . G C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.00;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3999,409,0 chrXIV 542931 . T C 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=2.959;HaplotypeScore=13.3811;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.817;QD=24.17;ReadPosRankSum=2.398;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4664,472,0 chrXIV 543016 . G A 4833.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.6580;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4833,493,0 chrXIV 543829 . A T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.47;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4235,421,0 chrXIV 544303 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=137;Dels=0.00;FS=7.510;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.027;QD=24.45;ReadPosRankSum=2.378;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3349,343,0 chrXIV 544324 . A G 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=126;Dels=0.00;FS=5.963;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.032;QD=23.02;ReadPosRankSum=2.944;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2934,298,0 chrXIV 544644 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=25.86;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3269,322,0 chrXIV 544661 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=26.20;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3125,304,0 chrXIV 544744 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3475,346,0 chrXIV 544998 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=146;Dels=0.00;FS=8.841;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.212;QD=23.52;ReadPosRankSum=2.346;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3434,357,0 chrXIV 545184 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=6.392;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.536;QD=24.06;ReadPosRankSum=2.404;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2655,265,0 chrXIV 545273 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=24.64;ReadPosRankSum=1.693;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2226,222,0 chrXIV 545517 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.82;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3010,304,0 chrXIV 545697 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.74;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4867,490,0 chrXIV 545945 . T A 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.580;DP=132;Dels=0.00;FS=6.012;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.061;QD=23.73;ReadPosRankSum=2.916;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3166,327,0 chrXIV 546100 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=6.286;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.254;QD=25.11;ReadPosRankSum=2.400;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3791,394,0 chrXIV 546148 . A T 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=146;Dels=0.00;FS=9.304;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.248;QD=26.13;ReadPosRankSum=2.883;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3815,370,0 chrXIV 546186 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2267;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.26;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3493,355,0 chrXIV 546237 . T C 4703.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=15.9087;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.98;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4703,481,0 chrXIV 546598 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=0.762;QD=27.12;ReadPosRankSum=1.686;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:4122,421,0 chrXIV 546706 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;QD=23.43;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2189,219,0 chrXIV 547142 . T A 1987 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=7;MQRankSum=1.484;QD=17.43;ReadPosRankSum=0.955;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2020,186,0 chrXIV 547200 . A T 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.660;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=1.684;QD=23.94;ReadPosRankSum=1.636;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3448,352,0 chrXIV 547250 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=173;Dels=0.00;FS=9.035;HaplotypeScore=10.2811;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=-2.389;QD=24.83;ReadPosRankSum=3.389;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:4296,442,0 chrXIV 547365 . C G 2505 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.05;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2538,264,0 chrXIV 547408 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.09;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3006,304,0 chrXIV 547464 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=161;Dels=0.00;FS=10.143;HaplotypeScore=9.6053;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.314;QD=22.39;ReadPosRankSum=2.742;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3605,364,0 chrXIV 547721 . A C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.187;QD=26.37;ReadPosRankSum=1.710;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4193,421,0 chrXIV 547766 . A T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.91;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3323,328,0 chrXIV 548403 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.637;HaplotypeScore=10.2789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.584;QD=24.37;ReadPosRankSum=2.313;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3973,403,0 chrXIV 548516 . T C 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=206;Dels=0.00;FS=2.900;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.030;QD=24.93;ReadPosRankSum=2.426;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:5135,529,0 chrXIV 548771 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.3266;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.007;QD=24.11;ReadPosRankSum=1.700;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5184,520,0 chrXIV 549170 . A G 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.443;QD=23.64;ReadPosRankSum=1.678;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4563,463,0 chrXIV 549239 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4342;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.007;QD=25.11;ReadPosRankSum=2.421;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4293,439,0 chrXIV 549291 . G C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3628,364,0 chrXIV 549415 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3042,318,0 chrXIV 549448 . A C 3029 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3062,315,0 chrXIV 549560 . T C 3047 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3080,307,0 chrXIV 549689 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2652,259,0 chrXIV 549786 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.245;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=26.41;ReadPosRankSum=1.706;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3513,352,0 chrXIV 550173 . A T 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.717;QD=23.62;ReadPosRankSum=1.662;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2371,237,0 chrXIV 550193 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.462;QD=23.91;ReadPosRankSum=1.655;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2185,203,0 chrXIV 550908 . G C 1802 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.40;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1835,189,0 chrXIV 551939 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.09;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3903,406,0 chrXIV 552035 . C G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.58;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4247,430,0 chrXIV 552067 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=2.936;HaplotypeScore=8.2248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.542;QD=24.44;ReadPosRankSum=2.384;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3641,379,0 chrXIV 552144 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8721;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.67;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3725,382,0 chrXIV 552287 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=25.50;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3340,343,0 chrXIV 552334 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=27.93;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3854,379,0 chrXIV 552417 . C A 2480 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=19.68;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2513,255,0 chrXIV 552548 . T C 3187 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=24.14;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3220,336,0 chrXIV 552682 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=25.51;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3852,394,0 chrXIV 552709 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.50;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3455,343,0 chrXIV 552787 . C G 4686.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4686,475,0 chrXIV 552957 . A G 5415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.114;QD=25.42;ReadPosRankSum=1.716;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5415,556,0 chrXIV 553147 . G C 2261 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=15.70;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2294,225,0 chrXIV 553207 . T A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.64;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3984,400,0 chrXIV 553370 . G C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8373;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=25.68;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3801,382,0 chrXIV 553539 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.0565;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.83;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4597,448,0 chrXIV 553652 . C T 5579.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.3001;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=27.08;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5579,559,0 chrXIV 553832 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.94;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4669,481,0 chrXIV 554140 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=25.02;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3010,301,0 chrXIV 554151 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.567;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.091;QD=24.41;ReadPosRankSum=2.328;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2987,298,0 chrXIV 554217 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=8.271;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.661;QD=24.17;ReadPosRankSum=2.409;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2957,303,0 chrXIV 554609 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.92;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4329,445,0 chrXIV 555245 . T C 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=189;Dels=0.00;FS=2.868;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.214;QD=25.42;ReadPosRankSum=2.411;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4804,481,0 chrXIV 555416 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.9625;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.13;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4725,466,0 chrXIV 555441 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.9135;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.18;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4498,448,0 chrXIV 555551 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.947;QD=24.79;ReadPosRankSum=1.692;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4363,448,0 chrXIV 555641 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.227;QD=25.58;ReadPosRankSum=1.709;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3914,397,0 chrXIV 555698 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.291;QD=25.25;ReadPosRankSum=1.682;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3485,346,0 chrXIV 555821 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3507,355,0 chrXIV 556301 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.50;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4161,406,0 chrXIV 556380 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=2.801;HaplotypeScore=8.2594;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.370;QD=22.72;ReadPosRankSum=2.371;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3589,370,0 chrXIV 556391 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.570;QD=20.02;ReadPosRankSum=1.709;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3116,316,0 chrXIV 556412 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.78;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3690,367,0 chrXIV 556547 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4663;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.94;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4428,436,0 chrXIV 556862 . A C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=141;Dels=0.00;FS=6.091;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.791;QD=24.13;ReadPosRankSum=2.936;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3403,349,0 chrXIV 556914 . A T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.28;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3837,379,0 chrXIV 559885 . C T 5138.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5138,517,0 chrXIV 560313 . A T 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.548;QD=25.71;ReadPosRankSum=1.658;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4833,475,0 chrXIV 560592 . A G 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=3.436;HaplotypeScore=106.0382;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-0.577;QD=17.76;ReadPosRankSum=1.686;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1365,153,0 chrXIV 560615 . T C 1072 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=19.14;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1105,111,0 chrXIV 560631 . A G 637 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;QD=17.22;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:670,69,0 chrXIV 560653 . C T 578 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=15.21;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:611,66,0 chrXIV 560654 . T A 578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=4.150;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;MQRankSum=-0.844;QD=14.82;ReadPosRankSum=1.644;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:66:611,66,0 chrXIV 560671 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;QD=15.90;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:844,87,0 chrXIV 560870 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=6.448;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-1.491;QD=19.20;ReadPosRankSum=2.377;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2644,264,0 chrXIV 560881 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=19.96;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3147,324,0 chrXIV 560883 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=4.075;HaplotypeScore=3.6158;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-0.118;QD=19.49;ReadPosRankSum=1.711;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3171,333,0 chrXIV 560972 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=158;Dels=0.03;FS=2.938;HaplotypeScore=16.6829;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=-0.220;QD=23.58;ReadPosRankSum=2.417;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3725,385,0 chrXIV 561038 . T A 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.104;DP=106;Dels=0.00;FS=16.797;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;MQRankSum=-0.104;QD=24.25;ReadPosRankSum=3.562;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:5,101:106:99:2604,261,0 chrXIV 561043 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=1.214;QD=25.10;ReadPosRankSum=1.700;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2719,273,0 chrXIV 561076 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=0.061;QD=22.85;ReadPosRankSum=1.702;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2638,276,0 chrXIV 561110 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=22.56;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1951,198,0 chrXIV 561164 . A T 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;MQRankSum=-1.335;QD=21.84;ReadPosRankSum=1.675;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1365,138,0 chrXIV 561180 . A G 1117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=28.8400;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;MQRankSum=-2.401;QD=21.90;ReadPosRankSum=2.253;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:2,48:51:99:1150,117,0 chrXIV 561281 . G T 423 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=16.7059;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=15.67;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:45:456,45,0 chrXIV 561317 . C T 210.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=16.16;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:243,24,0 chrXIV 561323 . G A 172.06 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=13.24;SB=-1.169e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:205,21,0 chrXIV 561328 . C T 120.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.93;SB=-5.920e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:153,15,0 chrXIV 561332 . G A 120.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.02;SB=-6.224e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:153,15,0 chrXIV 561350 . A T 90.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.96;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:123,12,0 chrXIV 561364 . G A 96.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.03;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:129,12,0 chrXIV 561370 . T C 90.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=5.32;SB=-3.152e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:123,12,0 chrXIV 561394 . T A 267 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=11.13;SB=-6.402e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:30:300,30,0 chrXIV 561473 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=28.24;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1106,111,0 chrXIV 561486 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=27.53;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1024,102,0 chrXIV 561496 . T C 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;MQRankSum=-1.024;QD=24.30;ReadPosRankSum=2.203;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:99:1005,102,0 chrXIV 561600 . A G 282 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=15.67;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:315,33,0 chrXIV 561711 . G A 468 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=4;QD=16.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:501,57,0 chrXIV 561783 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=2;QD=18.31;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1663,209,0 chrXIV 563215 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.20;MQ0=15;QD=1.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,7:21:6:53,6,0 chrXIV 563266 . G T 233.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;QD=21.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:27:266,27,0 chrXIV 563408 . T C 201.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=0;MQRankSum=0.992;QD=14.36;ReadPosRankSum=1.488;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:24:234,24,0 chrXIV 563413 . T A 260 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=15;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=1;MQRankSum=0.992;QD=17.33;ReadPosRankSum=1.488;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:2,13:15:30:293,30,0 chrXIV 563416 . G A 260 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=16;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=2;MQRankSum=0.992;QD=16.25;ReadPosRankSum=1.488;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:2,13:16:30:293,30,0 chrXIV 563428 . G A 260 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=16;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=2;MQRankSum=1.240;QD=16.25;ReadPosRankSum=1.488;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:2,14:16:30:293,30,0 chrXIV 568008 . G A 419 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=8.73;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:48:452,48,0 chrXIV 568045 . T A 984 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=19.68;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1017,102,0 chrXIV 568046 . T C 974 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=19.48;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1007,102,0 chrXIV 568113 . T G 2196 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=7;QD=20.91;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:7,97:105:99:2229,231,0 chrXIV 568114 . C T 2151 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=7;QD=20.49;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:7,97:105:99:2184,231,0 chrXIV 568362 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.54;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1572,165,0 chrXIV 568368 . T G 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-1.260;QD=19.56;ReadPosRankSum=1.693;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1754,177,0 chrXIV 568547 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.095;QD=22.10;ReadPosRankSum=2.292;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2442,252,0 chrXIV 568618 . A C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=91;Dels=0.00;FS=2.802;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.096;QD=22.01;ReadPosRankSum=2.368;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:2036,213,0 chrXIV 568753 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.124;QD=25.34;ReadPosRankSum=1.702;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2922,295,0 chrXIV 568837 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.44;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4376,463,0 chrXIV 568887 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=4.288;HaplotypeScore=7.3778;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.351;QD=24.53;ReadPosRankSum=1.687;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3827,394,0 chrXIV 568902 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4046;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.80;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4116,421,0 chrXIV 568967 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=222;Dels=0.00;FS=6.240;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.617;QD=23.01;ReadPosRankSum=2.405;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5109,520,0 chrXIV 569371 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.71;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4149,403,0 chrXIV 569942 . C T 1925 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=15;QD=19.64;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1958,192,0 chrXIV 569961 . G C 2094 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=16;QD=18.37;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2127,219,0 chrXIV 570002 . G A 3185 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2496;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=23;QD=19.30;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3218,328,0 chrXIV 570020 . C T 2581 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=25;QD=17.68;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2614,255,0 chrXIV 570034 . C A 2449 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=34;QD=16.44;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2482,246,0 chrXIV 570117 . A G 346 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=20.0999;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=13;QD=7.21;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:42:379,42,0 chrXIV 570162 . G C 1245 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=20;QD=17.54;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1278,126,0 chrXIV 570167 . T C 1218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=83;Dels=0.00;FS=23.410;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=22;MQRankSum=3.307;QD=14.67;ReadPosRankSum=3.074;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:99:1251,132,0 chrXIV 570253 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;DP=71;Dels=0.00;FS=2.218;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=18.07;MQ0=43;MQRankSum=-0.092;QD=1.11;ReadPosRankSum=-0.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,27:71:99:109,0,227 chrXIV 570461 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.76;MQ0=26;QD=0.76;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,66:66:9:82,9,0 chrXIV 570475 . T C 50.97 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.49;MQ0=41;QD=0.60;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,85:85:9:83,9,0 chrXIV 570509 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.18;MQ0=27;MQRankSum=-2.203;QD=0.37;ReadPosRankSum=2.327;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:2,65:67:6:56,6,0 chrXIV 570569 . C T 415 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=8;QD=10.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:45:448,45,0 chrXIV 570574 . G A 409 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=6;QD=9.30;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:442,45,0 chrXIV 570597 . G A 568 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=17;QD=6.38;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:60:601,60,0 chrXIV 570599 . C T 604 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=19.32;MQ0=18;QD=6.49;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:63:637,63,0 chrXIV 570609 . A G 629 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=23;QD=5.29;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,114:119:69:662,69,0 chrXIV 570750 . A G 5119.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=238;Dels=0.00;FS=23.664;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=28;MQRankSum=0.067;QD=21.51;ReadPosRankSum=2.967;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:3,235:238:99:5119,532,0 chrXIV 570761 . C T 4429.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=42;MQRankSum=-1.012;QD=17.72;ReadPosRankSum=0.795;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,248:250:99:4429,451,0 chrXIV 570777 . G A 4978.01 filter AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=4.0816;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=43;QD=17.22;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,289:289:99:4978,487,0 chrXIV 570806 . A G 5075.01 filter AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=33.6143;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=42;QD=14.58;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,345:348:99:5075,538,0 chrXIV 570955 . T C 14646.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.830;DP=605;Dels=0.00;FS=7.648;HaplotypeScore=35.5862;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=28;MQRankSum=-0.620;QD=24.21;ReadPosRankSum=3.808;SB=-5.214e+03 GT:AD:DP:GQ:PL 1/1:5,597:605:99:14646,1520,0 chrXIV 570986 . T C 12385.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=590;Dels=0.00;FS=2.659;HaplotypeScore=33.7987;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=38;MQRankSum=1.967;QD=20.99;ReadPosRankSum=2.423;SB=-4.168e+03 GT:AD:DP:GQ:PL 1/1:2,586:590:99:12385,1259,0 chrXIV 571020 . G A 10704.01 filter AC=2;AF=1.00;AN=2;DP=534;Dels=0.00;FS=0.000;HaplotypeScore=16.2305;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=48;QD=20.04;SB=-5.078e+03 GT:AD:DP:GQ:PL 1/1:0,531:534:99:10704,1085,0 chrXIV 571049 . G A 8056.01 filter AC=2;AF=1.00;AN=2;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=2.9392;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=39;QD=17.55;SB=-3.620e+03 GT:AD:DP:GQ:PL 1/1:0,459:459:99:8056,799,0 chrXIV 571056 . A C 7538.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=38;MQRankSum=-0.725;QD=16.42;ReadPosRankSum=2.403;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:3,454:459:99:7538,799,0 chrXIV 571166 . T C 8600.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=460;Dels=0.00;FS=11.973;HaplotypeScore=8.5509;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=14;MQRankSum=2.272;QD=18.70;ReadPosRankSum=2.400;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,455:460:99:8600,874,0 chrXIV 571170 . G A 8400.01 filter AC=2;AF=1.00;AN=2;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=15;QD=18.67;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,450:450:99:8400,868,0 chrXIV 571312 . A G 2536 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=205;Dels=0.00;FS=5.254;HaplotypeScore=4.9610;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=56;MQRankSum=-2.224;QD=12.37;ReadPosRankSum=3.315;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:4,198:205:99:2569,276,0 chrXIV 571323 . C G 3210.99 filter AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=48;QD=13.78;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3244,348,0 chrXIV 571380 . G A 2999 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=31;QD=13.95;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3032,324,0 chrXIV 571440 . C A 690 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=63;QD=4.96;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,138:139:81:723,81,0 chrXIV 571502 . T C 1529 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=16.43;MQ0=94;QD=7.11;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:1,213:215:99:1562,171,0 chrXIV 571535 . C G 1949 filter AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.1494;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=77;QD=8.90;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,219:219:99:1982,213,0 chrXIV 571707 . T C 1207 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=16.85;MQ0=93;MQRankSum=0.699;QD=8.05;ReadPosRankSum=1.672;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:1240,129,0 chrXIV 571751 . G A 2512 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1413;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=33;QD=16.31;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2545,270,0 chrXIV 571793 . A G 1817 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=120;Dels=0.00;FS=7.118;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=17;MQRankSum=0.151;QD=15.14;ReadPosRankSum=1.698;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1850,195,0 chrXIV 571841 . C T 771 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=50;QD=8.38;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:84:804,84,0 chrXIV 571889 . T C 1343 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1201;MLEAC=2;MLEAF=1.00;MQ=18.39;MQ0=66;MQRankSum=-1.279;QD=8.95;ReadPosRankSum=1.650;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:1376,147,0 chrXIV 571968 . T C 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;DP=230;Dels=0.00;FS=57.429;HaplotypeScore=11.0535;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=33;MQRankSum=-6.756;QD=1.06;ReadPosRankSum=-1.229;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:133,96:230:99:274,0,2470 chrXIV 571979 . C T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;DP=205;Dels=0.00;FS=63.617;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=31;MQRankSum=-6.584;QD=0.53;ReadPosRankSum=-1.178;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:122,82:205:99:139,0,2277 chrXIV 571992 . T C 2463 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=24;QD=14.75;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2496,252,0 chrXIV 572008 . G A 1820 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=22;QD=14.44;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1853,183,0 chrXIV 572015 . C T 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DP=121;Dels=0.00;FS=63.857;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=21;MQRankSum=-6.219;QD=0.95;ReadPosRankSum=-0.193;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:61,60:121:99:145,0,1259 chrXIV 572046 . G A 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=107;Dels=0.00;FS=19.067;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=31.59;MQ0=15;MQRankSum=-0.493;QD=11.23;ReadPosRankSum=2.932;SB=-7.470e+02 GT:AD:DP:GQ:PL 0/1:20,86:107:99:1232,0,143 chrXIV 572070 . C T 2309 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=10;QD=19.08;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2342,243,0 chrXIV 572097 . C A 3044 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.4907;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=23;MQRankSum=1.297;QD=14.63;ReadPosRankSum=1.088;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:3077,330,0 chrXIV 572098 . A C 433.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;DP=211;Dels=0.00;FS=49.917;HaplotypeScore=5.2793;MLEAC=1;MLEAF=0.500;MQ=31.07;MQ0=23;MQRankSum=-1.728;QD=2.05;ReadPosRankSum=-5.491;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:134,76:211:99:463,0,2088 chrXIV 572102 . T A 3477.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.6454;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=25;MQRankSum=-0.795;QD=15.73;ReadPosRankSum=1.714;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:3477,354,0 chrXIV 572137 . A G 1720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709;DP=253;Dels=0.00;FS=33.984;HaplotypeScore=9.8724;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=30;MQRankSum=3.141;QD=6.80;ReadPosRankSum=6.050;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:114,139:253:99:1750,0,1080 chrXIV 572143 . G A 755.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DP=238;Dels=0.00;FS=40.138;HaplotypeScore=11.5044;MLEAC=1;MLEAF=0.500;MQ=29.90;MQ0=30;MQRankSum=-3.609;QD=3.17;ReadPosRankSum=-3.759;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:140,98:238:99:785,0,1908 chrXIV 572150 . A G 405.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.629;DP=220;Dels=0.00;FS=43.414;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=31;MQRankSum=-3.894;QD=1.84;ReadPosRankSum=-0.221;SB=-2.120e+02 GT:AD:DP:GQ:PL 0/1:142,78:220:99:435,0,1963 chrXIV 572195 . C T 1459 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.3943;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=22;QD=13.51;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1492,159,0 chrXIV 572217 . C A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=16;MQRankSum=0.499;QD=1.00;ReadPosRankSum=0.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,17:55:85:85,0,473 chrXIV 572219 . G A 751 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=14;QD=14.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:87:784,87,0 chrXIV 572224 . G A 609.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.914;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=14;MQRankSum=0.765;QD=10.15;ReadPosRankSum=-2.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,48:60:74:639,0,74 chrXIV 572252 . T C 1215.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;DP=109;Dels=0.00;FS=36.752;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=34.07;MQ0=12;MQRankSum=3.085;QD=11.15;ReadPosRankSum=5.362;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:33,76:109:99:1245,0,297 chrXIV 572261 . G A 2168 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=10;QD=16.55;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2201,243,0 chrXIV 572277 . C T 476.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;DP=137;Dels=0.00;FS=12.687;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.16;MQ0=8;MQRankSum=-3.722;QD=3.47;ReadPosRankSum=-2.257;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:86,50:137:99:506,0,1227 chrXIV 572298 . A G 488.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DP=149;Dels=0.00;FS=9.038;HaplotypeScore=8.8027;MLEAC=1;MLEAF=0.500;MQ=32.27;MQ0=14;MQRankSum=-2.936;QD=3.28;ReadPosRankSum=4.261;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:89,58:149:99:518,0,1101 chrXIV 572304 . G A 566.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;DP=147;Dels=0.00;FS=6.471;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=15;MQRankSum=-2.559;QD=3.85;ReadPosRankSum=4.361;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:85,62:147:99:596,0,990 chrXIV 572330 . C T 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=20;MQRankSum=0.339;QD=2.74;ReadPosRankSum=0.276;SB=-3.660e+02 GT:AD:DP:GQ:PL 0/1:69,65:134:99:397,0,557 chrXIV 572352 . C T 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.139;DP=98;Dels=0.00;FS=6.252;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=22;MQRankSum=1.142;QD=2.44;ReadPosRankSum=3.034;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:46,52:98:99:269,0,194 chrXIV 572359 . C A 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=43.6030;MLEAC=1;MLEAF=0.500;MQ=20.23;MQ0=20;MQRankSum=0.880;QD=2.30;ReadPosRankSum=1.823;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:31,45:76:78:205,0,78 chrXIV 572360 . G C 320 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=43.6030;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=20;QD=4.21;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:39:353,39,0 chrXIV 572364 . T C 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=74;Dels=0.00;FS=2.922;HaplotypeScore=44.4971;MLEAC=1;MLEAF=0.500;MQ=19.98;MQ0=19;MQRankSum=0.557;QD=2.41;ReadPosRankSum=1.502;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:29,45:74:30:208,0,30 chrXIV 572365 . A C 173.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;DP=74;Dels=0.00;FS=2.922;HaplotypeScore=44.4971;MLEAC=1;MLEAF=0.500;MQ=19.98;MQ0=19;MQRankSum=1.181;QD=2.34;ReadPosRankSum=1.578;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:29,45:74:22:203,0,22 chrXIV 572374 . G A 220.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.69;MQ0=17;QD=3.06;SB=-8.102e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:27:253,27,0 chrXIV 572516 . T C 2362 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=18;QD=15.54;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2395,249,0 chrXIV 572525 . T C 2412 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=16;MQRankSum=-1.005;QD=15.17;ReadPosRankSum=1.708;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2445,258,0 chrXIV 572529 . C T 2447 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=16;QD=15.20;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2480,252,0 chrXIV 572596 . C T 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=87;Dels=0.00;FS=13.435;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=7;MQRankSum=-2.090;QD=2.15;ReadPosRankSum=-0.985;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,37:87:99:217,0,665 chrXIV 572597 . T C 1079 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=88;Dels=0.00;FS=4.960;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=7;MQRankSum=0.695;QD=12.26;ReadPosRankSum=3.344;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:4,83:88:99:1112,123,0 chrXIV 572600 . A G 624.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044;DP=86;Dels=0.00;FS=9.166;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=27.44;MQ0=8;MQRankSum=1.729;QD=7.26;ReadPosRankSum=1.539;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:39,47:86:99:654,0,310 chrXIV 572607 . C T 272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DP=88;Dels=0.00;FS=6.997;HaplotypeScore=6.9887;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=9;MQRankSum=-1.327;QD=3.09;ReadPosRankSum=-0.144;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,36:88:99:302,0,790 chrXIV 572643 . A G 774 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=80;Dels=0.03;FS=9.709;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=25;MQRankSum=0.710;QD=9.67;ReadPosRankSum=2.267;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:84:807,84,0 chrXIV 572678 . C T 2142 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.9986;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=22;QD=13.56;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2175,219,0 chrXIV 572728 . C T 987.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DP=156;Dels=0.00;FS=6.120;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=16;MQRankSum=2.369;QD=6.33;ReadPosRankSum=-0.324;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1017,0,759 chrXIV 572753 . C A 634.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DP=120;Dels=0.00;FS=0.938;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=32.74;MQ0=12;MQRankSum=-1.327;QD=5.28;ReadPosRankSum=-0.363;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:57,63:120:99:664,0,743 chrXIV 572774 . A C 1151 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=16;QD=14.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1184,117,0 chrXIV 572815 . C T 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=72;Dels=0.00;FS=2.919;HaplotypeScore=4.1514;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=9;MQRankSum=-0.768;QD=4.10;ReadPosRankSum=-1.275;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:35,36:72:99:325,0,431 chrXIV 572837 . T C 380.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DP=69;Dels=0.00;FS=2.930;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=8;MQRankSum=0.710;QD=5.51;ReadPosRankSum=-0.976;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:33,35:69:99:410,0,301 chrXIV 572852 . C T 468.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.136;DP=69;Dels=0.00;FS=4.853;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=7;MQRankSum=1.953;QD=6.78;ReadPosRankSum=-1.183;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:34,33:69:99:498,0,165 chrXIV 572861 . A T 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DP=60;Dels=0.00;FS=4.916;HaplotypeScore=32.3091;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=4;MQRankSum=-1.476;QD=2.28;ReadPosRankSum=1.591;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:31,29:60:99:167,0,488 chrXIV 572878 . G A 395 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=9;QD=9.19;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,39:43:42:428,42,0 chrXIV 572907 . C A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=34;MQRankSum=-0.607;QD=0.89;ReadPosRankSum=0.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,25:63:86:86,0,254 chrXIV 572908 . T C 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=34;MQRankSum=-0.787;QD=0.97;ReadPosRankSum=0.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,25:63:91:91,0,224 chrXIV 572915 . C T 356 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=35;QD=5.74;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:39:389,39,0 chrXIV 572997 . T C 165.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=15.01;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,10:11:21:198,21,0 chrXIV 572998 . C T 154.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;QD=15.41;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:187,21,0 chrXIV 573614 . G T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.07;MQ0=143;QD=0.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:69,75:145:6:58,6,0 chrXIV 573662 . C T 688 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=145;QD=3.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,176:177:75:721,75,0 chrXIV 573783 . C T 724 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=71;QD=6.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:104:87:757,87,0 chrXIV 573939 . A C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=52.0276;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;MQRankSum=-0.953;QD=19.19;ReadPosRankSum=1.705;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2528,261,0 chrXIV 573968 . C T 624.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.358;DP=107;Dels=0.00;FS=195.149;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=36.62;MQ0=8;MQRankSum=-3.878;QD=5.83;ReadPosRankSum=1.916;SB=-1.202e+01 GT:AD:DP:GQ:PL 0/1:47,60:107:99:654,0,541 chrXIV 573972 . C T 585.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DP=107;Dels=0.00;FS=189.700;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=36.06;MQ0=8;MQRankSum=-4.150;QD=5.47;ReadPosRankSum=2.324;SB=-2.602e+01 GT:AD:DP:GQ:PL 0/1:44,63:107:99:615,0,552 chrXIV 574001 . A C 573 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=75;Dels=0.00;FS=16.914;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=8;MQRankSum=-2.303;QD=7.64;ReadPosRankSum=2.376;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:63:606,63,0 chrXIV 574002 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;DP=75;Dels=0.00;FS=29.088;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=8;MQRankSum=1.592;QD=0.57;ReadPosRankSum=-0.538;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,14:75:73:73,0,421 chrXIV 574012 . C T 487.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=82;Dels=0.00;FS=49.663;HaplotypeScore=19.7989;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=8;MQRankSum=-1.995;QD=5.94;ReadPosRankSum=-3.048;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:15,67:82:47:517,0,47 chrXIV 574021 . A G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=44;Dels=0.00;FS=18.410;HaplotypeScore=4.6355;MLEAC=1;MLEAF=0.500;MQ=31.75;MQ0=5;MQRankSum=0.188;QD=0.70;ReadPosRankSum=2.335;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,12:44:61:61,0,376 chrXIV 574027 . G A 414.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=51;Dels=0.00;FS=14.665;HaplotypeScore=4.5127;MLEAC=1;MLEAF=0.500;MQ=34.96;MQ0=5;MQRankSum=0.579;QD=8.12;ReadPosRankSum=-2.803;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:12,39:51:59:444,0,59 chrXIV 574033 . G A 774 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3542;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=5;QD=13.34;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:84:807,84,0 chrXIV 574042 . G A 731.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;DP=67;Dels=0.00;FS=22.719;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=4;MQRankSum=0.667;QD=10.91;ReadPosRankSum=-1.579;SB=-6.160e+02 GT:AD:DP:GQ:PL 0/1:11,55:67:19:761,0,19 chrXIV 574150 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=25.93;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:3067,315,0 chrXIV 574190 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=6.300;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-1.918;QD=26.41;ReadPosRankSum=2.339;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2965,300,0 chrXIV 574362 . A G 2276 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.31;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2309,243,0 chrXIV 574682 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.0809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4779,472,0 chrXIV 574776 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.58;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4519,451,0 chrXIV 575355 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3673,373,0 chrXIV 575525 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3529,358,0 chrXIV 575763 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.86;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3414,337,0 chrXIV 575952 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.94;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3320,334,0 chrXIV 576018 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.20;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2755,279,0 chrXIV 576084 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=25.66;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4388,427,0 chrXIV 576121 . A C 4240.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.39;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4240,436,0 chrXIV 576309 . G A 4541.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.28;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4541,460,0 chrXIV 576317 . G T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9864;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.91;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4719,475,0 chrXIV 576383 . A G 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=243;Dels=0.00;FS=2.551;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.959;QD=22.04;ReadPosRankSum=2.921;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:3,239:243:99:5356,550,0 chrXIV 576675 . C T 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.653;HaplotypeScore=4.0660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.669;QD=20.51;ReadPosRankSum=1.700;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2269,222,0 chrXIV 577194 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.40;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:58:99:1274,135,0 chrXIV 577269 . G A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=10.825;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=0.195;QD=20.14;ReadPosRankSum=0.977;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2711,291,0 chrXIV 577292 . C T 2012 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=16.63;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2045,204,0 chrXIV 577297 . G T 1821 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=15.56;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1854,183,0 chrXIV 577301 . G A 1754 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=15.12;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1787,177,0 chrXIV 577322 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=11.04;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1402,147,0 chrXIV 577325 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;MQRankSum=-2.472;QD=10.45;ReadPosRankSum=3.385;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:4,117:121:99:1297,135,0 chrXIV 577382 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9366;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.33;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3626,378,0 chrXIV 577727 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.22;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3455,352,0 chrXIV 577754 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.67;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3478,343,0 chrXIV 577824 . C A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2285;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.09;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3510,349,0 chrXIV 577917 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.24;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2984,298,0 chrXIV 577988 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.90;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3346,340,0 chrXIV 578628 . T G 7697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=19.0583;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.295;QD=25.32;ReadPosRankSum=1.698;SB=-3.493e+03 GT:AD:DP:GQ:PL 1/1:1,300:304:99:7697,772,0 chrXIV 579121 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4345,445,0 chrXIV 579960 . G A 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;DP=205;Dels=0.03;FS=4.793;HaplotypeScore=23.0810;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;MQRankSum=-1.150;QD=13.93;ReadPosRankSum=0.242;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:4,194:198:99:2889,263,0 chrXIV 579966 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=22.2923;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=12.03;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2354,237,0 chrXIV 579972 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;QD=11.42;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2237,231,0 chrXIV 579984 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=9.95;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:2003,204,0 chrXIV 580005 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=13.2238;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=0.418;QD=12.89;ReadPosRankSum=2.423;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2417,255,0 chrXIV 580534 . A G 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=4.458;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.732;QD=24.64;ReadPosRankSum=1.695;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4657,490,0 chrXIV 580610 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4063,415,0 chrXIV 581286 . T C 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.943;QD=25.72;ReadPosRankSum=0.807;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4681,487,0 chrXIV 581472 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.71;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3020,301,0 chrXIV 581502 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.20;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2678,273,0 chrXIV 581872 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=25.08;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3286,322,0 chrXIV 581894 . A C 3086 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.69;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,131:136:99:3119,316,0 chrXIV 581924 . C A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.93;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3852,379,0 chrXIV 582432 . C A 2699 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2732,271,0 chrXIV 582651 . C A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4523,448,0 chrXIV 582726 . A G 5503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=2.874;HaplotypeScore=11.4434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.113;QD=25.48;ReadPosRankSum=2.404;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:5503,547,0 chrXIV 582810 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4439,442,0 chrXIV 582846 . G A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5300,529,0 chrXIV 582944 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.644;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.235;QD=27.16;ReadPosRankSum=1.711;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4400,442,0 chrXIV 583083 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4432,448,0 chrXIV 583481 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.07;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3267,322,0 chrXIV 583620 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=3.193;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.471;QD=26.19;ReadPosRankSum=1.685;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3903,394,0 chrXIV 583827 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=113;Dels=0.00;FS=2.703;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.802;QD=24.62;ReadPosRankSum=2.362;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2815,285,0 chrXIV 583930 . G T 2356 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.33;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2389,237,0 chrXIV 584076 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=98;Dels=0.00;FS=3.918;HaplotypeScore=86.6370;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.760;QD=0.14;ReadPosRankSum=3.706;SB=-1.082e+03 GT:AD:DP:GQ:PL 0/1:6,91:98:44:44,0,77 chrXIV 584126 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.89;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2463,243,0 chrXIV 584635 . A G 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.9651;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.962;QD=25.06;ReadPosRankSum=1.671;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4311,442,0 chrXIV 584770 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4310,421,0 chrXIV 585051 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.93;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2885,286,0 chrXIV 585226 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=5.166;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.427;QD=25.62;ReadPosRankSum=1.707;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3536,364,0 chrXIV 585292 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3193,325,0 chrXIV 585962 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.9987;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.98;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3273,322,0 chrXIV 585996 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=2.945;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.010;QD=24.76;ReadPosRankSum=2.391;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3128,319,0 chrXIV 586230 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.114;QD=22.70;ReadPosRankSum=1.701;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2575,261,0 chrXIV 586448 . T A 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.218;QD=25.90;ReadPosRankSum=2.343;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2416,246,0 chrXIV 586543 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=21.87;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2854,297,0 chrXIV 586546 . C G 2905 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=22.35;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2938,292,0 chrXIV 586560 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.73;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2795,288,0 chrXIV 586773 . T C 4889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=207;Dels=0.00;FS=8.513;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.291;QD=23.62;ReadPosRankSum=2.378;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4889,508,0 chrXIV 586794 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=207;Dels=0.00;FS=2.934;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.762;QD=24.29;ReadPosRankSum=2.390;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:5027,499,0 chrXIV 586871 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3872,391,0 chrXIV 587725 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.52;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3806,385,0 chrXIV 588085 . T G 1793 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.76;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1826,183,0 chrXIV 588114 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.02;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2123,210,0 chrXIV 588859 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0332;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.47;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4381,448,0 chrXIV 588903 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3475,355,0 chrXIV 588959 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=15.1332;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.74;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3632,367,0 chrXIV 589185 . C G 4809.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.2998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4809,496,0 chrXIV 589356 . T C 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=227;Dels=0.00;FS=6.719;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.395;QD=24.80;ReadPosRankSum=2.406;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5629,565,0 chrXIV 589484 . C T 7206.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:7206,706,0 chrXIV 589622 . A T 5963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=249;Dels=0.00;FS=2.969;HaplotypeScore=20.1148;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.829;QD=23.95;ReadPosRankSum=2.381;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:5963,595,0 chrXIV 589664 . A T 7011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.163;QD=24.43;ReadPosRankSum=1.720;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:7011,694,0 chrXIV 589893 . G A 6757.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.9986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.39;SB=-3.745e+03 GT:AD:DP:GQ:PL 1/1:1,273:277:99:6757,658,0 chrXIV 589946 . A T 7231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=290;Dels=0.00;FS=3.040;HaplotypeScore=20.4195;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.720;QD=24.93;ReadPosRankSum=1.720;SB=-3.997e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:7231,736,0 chrXIV 590833 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=175;Dels=0.01;FS=3.112;HaplotypeScore=22.9906;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.047;QD=24.27;ReadPosRankSum=1.692;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4247,433,0 chrXIV 590903 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=26.66;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4266,427,0 chrXIV 590927 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6193;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.97;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4337,424,0 chrXIV 591058 . C T 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.2614;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.173;QD=24.00;ReadPosRankSum=0.615;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:5233,535,0 chrXIV 591136 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.96;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3225,316,0 chrXIV 591189 . A C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=24.05;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3559,367,0 chrXIV 591210 . G C 4012.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=24.32;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4012,406,0 chrXIV 591230 . C G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.94;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3647,367,0 chrXIV 591245 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-1.731;QD=21.05;ReadPosRankSum=2.951;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3022,321,0 chrXIV 591334 . A T 1943 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.43;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1976,204,0 chrXIV 591335 . T C 1937 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=3.188;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.035;QD=19.18;ReadPosRankSum=1.663;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1970,207,0 chrXIV 591344 . G A 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=17.69;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1961,195,0 chrXIV 591390 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=18.10;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2133,216,0 chrXIV 591420 . T C 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=-0.539;QD=16.50;ReadPosRankSum=2.409;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2030,210,0 chrXIV 591433 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.76;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2341,240,0 chrXIV 591460 . A G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=6.579;HaplotypeScore=9.2957;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.037;QD=18.44;ReadPosRankSum=1.708;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2651,279,0 chrXIV 591502 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.810;QD=23.60;ReadPosRankSum=-0.810;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3281,328,0 chrXIV 591556 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.712;QD=20.83;ReadPosRankSum=1.708;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3074,307,0 chrXIV 591830 . C T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.29;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4639,463,0 chrXIV 592102 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=26.53;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4589,451,0 chrXIV 592119 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9182;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.26;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3941,403,0 chrXIV 592518 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=170;Dels=0.00;FS=6.203;HaplotypeScore=13.1700;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.287;QD=24.55;ReadPosRankSum=2.377;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4174,415,0 chrXIV 592657 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=137;Dels=0.00;FS=6.448;HaplotypeScore=11.6194;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.473;QD=24.44;ReadPosRankSum=2.413;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3348,346,0 chrXIV 592909 . T C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.358;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.746;QD=23.79;ReadPosRankSum=1.679;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3126,324,0 chrXIV 593099 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=7.360;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.267;QD=24.54;ReadPosRankSum=2.401;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2561,264,0 chrXIV 593213 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3086,307,0 chrXIV 593575 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.64;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3897,394,0 chrXIV 593736 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.73;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4477,454,0 chrXIV 593883 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=3.014;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.771;QD=24.42;ReadPosRankSum=2.376;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4883,508,0 chrXIV 594246 . G C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4443,454,0 chrXIV 594474 . G T 3164 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3197,327,0 chrXIV 594531 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.111;QD=25.66;ReadPosRankSum=1.684;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3746,385,0 chrXIV 594588 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.410;QD=24.42;ReadPosRankSum=1.709;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3761,385,0 chrXIV 594860 . A C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=141;Dels=0.00;FS=3.443;HaplotypeScore=10.3526;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.215;QD=24.98;ReadPosRankSum=1.631;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,136:141:99:3522,372,0 chrXIV 595123 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.22;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3109,307,0 chrXIV 595364 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1133;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2290,237,0 chrXIV 595434 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.95;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3251,334,0 chrXIV 595549 . A T 3082 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3115,310,0 chrXIV 595591 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3264,337,0 chrXIV 595762 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4679,481,0 chrXIV 595893 . T A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.35;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3458,349,0 chrXIV 595975 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4302,445,0 chrXIV 596319 . C G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.53;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4597,451,0 chrXIV 596487 . A G 5395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.7046;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.465;QD=23.56;ReadPosRankSum=1.717;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5395,541,0 chrXIV 596700 . A T 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.7894;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.178;QD=23.22;ReadPosRankSum=1.676;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4319,454,0 chrXIV 597130 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7278;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3824,394,0 chrXIV 597333 . T C 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.446;QD=26.30;ReadPosRankSum=1.714;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:5128,526,0 chrXIV 597474 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=170;Dels=0.00;FS=5.416;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.769;QD=24.86;ReadPosRankSum=1.160;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:4227,423,0 chrXIV 597561 . A T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.18;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3327,340,0 chrXIV 597836 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.7454;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.878;QD=24.66;ReadPosRankSum=1.708;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3575,364,0 chrXIV 598013 . A T 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=-1.281;QD=19.33;ReadPosRankSum=1.648;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2411,279,0 chrXIV 598176 . C T 1039 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=13.67;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1072,108,0 chrXIV 598179 . A C 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.913;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;MQRankSum=-2.150;QD=12.24;ReadPosRankSum=2.317;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:939,99,0 chrXIV 598197 . C T 583 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=2;QD=11.43;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:616,63,0 chrXIV 598209 . T C 319 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=2;QD=9.11;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:39:352,39,0 chrXIV 598446 . G A 625 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.6073;MLEAC=2;MLEAF=1.00;MQ=14.13;MQ0=73;QD=4.73;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,129:132:75:658,75,0 chrXIV 598567 . G A 869 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.86;MQ0=134;QD=4.41;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,194:197:99:902,102,0 chrXIV 598615 . C A 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=1;MLEAF=0.500;MQ=11.86;MQ0=143;MQRankSum=-0.969;QD=1.27;ReadPosRankSum=-0.820;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:99,100:200:99:283,0,612 chrXIV 598714 . T C 2473.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240;DP=302;Dels=0.00;FS=2.704;HaplotypeScore=13.9095;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=40;MQRankSum=2.818;QD=8.19;ReadPosRankSum=0.019;SB=-1.295e+03 GT:AD:DP:GQ:PL 0/1:154,147:302:99:2503,0,2539 chrXIV 598862 . T C 568.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.4491;MLEAC=1;MLEAF=0.500;MQ=14.00;MQ0=119;MQRankSum=0.756;QD=2.37;ReadPosRankSum=0.966;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,120:240:99:598,0,629 chrXIV 598922 . A G 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=1;MLEAF=0.500;MQ=13.71;MQ0=122;MQRankSum=-2.575;QD=1.35;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,104:210:99:313,0,323 chrXIV 598979 . T C 539.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=21.2110;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=149;MQRankSum=1.239;QD=2.48;ReadPosRankSum=2.117;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:104,112:217:99:569,0,312 chrXIV 599087 . C T 1624.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.622;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=17.76;MQ0=105;MQRankSum=-0.727;QD=4.43;ReadPosRankSum=0.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,182:367:99:1654,0,1519 chrXIV 599108 . G A 1089.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.628;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=6.7557;MLEAC=1;MLEAF=0.500;MQ=17.43;MQ0=109;MQRankSum=-1.201;QD=3.30;ReadPosRankSum=-0.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,160:330:99:1119,0,1486 chrXIV 599232 . A G 9279.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=425;Dels=0.00;FS=2.423;HaplotypeScore=24.7001;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=2;MQRankSum=0.097;QD=21.83;ReadPosRankSum=2.960;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:3,422:425:99:9279,994,0 chrXIV 599314 . G A 3335.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.0977;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=33;QD=17.37;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3335,351,0 chrXIV 599321 . A G 914.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;DP=172;Dels=0.00;FS=4.705;HaplotypeScore=11.5203;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=33;MQRankSum=0.547;QD=5.31;ReadPosRankSum=1.680;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:103,69:172:99:944,0,1323 chrXIV 599322 . G T 890.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;DP=171;Dels=0.00;FS=7.601;HaplotypeScore=10.7316;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=33;MQRankSum=0.654;QD=5.20;ReadPosRankSum=1.351;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:99,69:171:99:920,0,1263 chrXIV 599368 . T A 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=144;Dels=0.00;FS=44.682;HaplotypeScore=11.1010;MLEAC=1;MLEAF=0.500;MQ=32.65;MQ0=7;MQRankSum=0.190;QD=4.00;ReadPosRankSum=-1.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,59:144:99:606,0,1236 chrXIV 599377 . G A 1280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DP=143;Dels=0.00;FS=44.258;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.27;MQ0=7;MQRankSum=0.781;QD=8.95;ReadPosRankSum=1.001;SB=-8.150e+02 GT:AD:DP:GQ:PL 0/1:54,89:143:99:1310,0,459 chrXIV 599392 . A G 1287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;DP=153;Dels=0.00;FS=68.304;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=33.51;MQ0=7;MQRankSum=-0.075;QD=8.41;ReadPosRankSum=2.162;SB=-7.540e+02 GT:AD:DP:GQ:PL 0/1:59,93:153:99:1317,0,619 chrXIV 599414 . G A 545.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.861;DP=145;Dels=0.00;FS=76.161;HaplotypeScore=13.2134;MLEAC=1;MLEAF=0.500;MQ=32.10;MQ0=7;MQRankSum=-0.004;QD=3.76;ReadPosRankSum=-0.823;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,58:145:99:575,0,1173 chrXIV 599441 . T C 1544 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=126;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=17;MQRankSum=-0.225;QD=12.25;ReadPosRankSum=1.700;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,124:126:99:1577,162,0 chrXIV 599476 . G T 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;DP=105;Dels=0.00;FS=15.825;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=22;MQRankSum=0.846;QD=4.88;ReadPosRankSum=0.685;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:53,50:105:99:542,0,527 chrXIV 599501 . G A 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=90;Dels=0.00;FS=1.016;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=26;MQRankSum=0.048;QD=3.26;ReadPosRankSum=-1.487;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:40,47:90:99:323,0,311 chrXIV 599550 . T C 1162 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=91;Dels=0.00;FS=5.722;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=30;MQRankSum=-2.917;QD=12.77;ReadPosRankSum=2.883;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:1195,126,0 chrXIV 599551 . G A 1222 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=30;QD=13.28;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1255,126,0 chrXIV 599612 . T G 1586 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=17;QD=12.29;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1619,168,0 chrXIV 599622 . G A 343.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=135;Dels=0.00;FS=67.121;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=11;MQRankSum=-2.980;QD=2.54;ReadPosRankSum=-1.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,61:135:99:373,0,1018 chrXIV 599629 . C T 297.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.591;DP=141;Dels=0.00;FS=61.768;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=10;MQRankSum=-1.958;QD=2.11;ReadPosRankSum=0.120;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,63:141:99:327,0,937 chrXIV 599633 . G A 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;DP=139;Dels=0.00;FS=56.789;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=8;MQRankSum=-1.703;QD=2.33;ReadPosRankSum=0.855;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,63:139:99:354,0,861 chrXIV 599654 . A G 751 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=107;Dels=0.00;FS=10.773;HaplotypeScore=81.2143;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=8;MQRankSum=-0.634;QD=7.02;ReadPosRankSum=2.350;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:78:784,78,0 chrXIV 599723 . G A 858 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=17;QD=9.33;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:93:891,93,0 chrXIV 599727 . A G 944 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=18;QD=10.37;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:977,102,0 chrXIV 599736 . A G 1195 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=18;QD=10.96;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1228,129,0 chrXIV 599886 . T G 1321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.186;DP=214;Dels=0.00;FS=14.337;HaplotypeScore=10.1434;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=22;MQRankSum=-0.704;QD=6.17;ReadPosRankSum=0.479;SB=-5.010e+02 GT:AD:DP:GQ:PL 0/1:109,104:214:99:1351,0,1253 chrXIV 599887 . A G 1335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;DP=211;Dels=0.00;FS=14.665;HaplotypeScore=11.7208;MLEAC=1;MLEAF=0.500;MQ=29.99;MQ0=22;MQRankSum=-2.169;QD=6.33;ReadPosRankSum=0.747;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:109,101:211:99:1365,0,1244 chrXIV 599892 . G T 1288.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DP=194;Dels=0.00;FS=5.639;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=23;MQRankSum=-1.161;QD=6.64;ReadPosRankSum=1.270;SB=-5.030e+02 GT:AD:DP:GQ:PL 0/1:101,92:194:99:1318,0,1183 chrXIV 599899 . G A 1342.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.175;DP=183;Dels=0.00;FS=6.011;HaplotypeScore=6.3524;MLEAC=1;MLEAF=0.500;MQ=27.53;MQ0=24;MQRankSum=-1.431;QD=7.33;ReadPosRankSum=1.099;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:93,90:183:99:1372,0,1041 chrXIV 599921 . A G 934.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.977;DP=178;Dels=0.00;FS=3.788;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=24;MQRankSum=0.707;QD=5.25;ReadPosRankSum=-0.288;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:90,88:178:99:964,0,1582 chrXIV 599947 . C T 1141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;DP=177;Dels=0.00;FS=11.375;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=16;MQRankSum=-0.972;QD=6.45;ReadPosRankSum=-0.251;SB=-6.710e+02 GT:AD:DP:GQ:PL 0/1:73,103:177:99:1171,0,1248 chrXIV 599953 . T C 1250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=191;Dels=0.00;FS=17.439;HaplotypeScore=12.6367;MLEAC=1;MLEAF=0.500;MQ=29.53;MQ0=14;MQRankSum=-0.334;QD=6.54;ReadPosRankSum=0.994;SB=-7.160e+02 GT:AD:DP:GQ:PL 0/1:77,112:191:99:1280,0,1342 chrXIV 599974 . A G 1370.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;DP=216;Dels=0.00;FS=42.335;HaplotypeScore=6.4583;MLEAC=1;MLEAF=0.500;MQ=35.90;MQ0=8;MQRankSum=-1.485;QD=6.34;ReadPosRankSum=-0.967;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:139,77:216:99:1400,0,1900 chrXIV 599988 . C T 4080.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.168;DP=230;Dels=0.00;FS=4.993;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=8;MQRankSum=0.713;QD=17.74;ReadPosRankSum=-1.183;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:4080,395,0 chrXIV 599990 . C T 4138.01 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.5455;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=8;QD=17.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4138,421,0 chrXIV 599999 . A G 1175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.994;DP=252;Dels=0.00;FS=96.991;HaplotypeScore=8.0056;MLEAC=1;MLEAF=0.500;MQ=34.16;MQ0=8;MQRankSum=-0.998;QD=4.66;ReadPosRankSum=0.350;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,89:252:99:1205,0,2247 chrXIV 600027 . C T 1590.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;DP=307;Dels=0.00;FS=53.759;HaplotypeScore=17.0661;MLEAC=1;MLEAF=0.500;MQ=36.17;MQ0=13;MQRankSum=-1.368;QD=5.18;ReadPosRankSum=-0.917;SB=-3.510e+02 GT:AD:DP:GQ:PL 0/1:183,123:307:99:1620,0,2472 chrXIV 600034 . G T 2191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.776;DP=300;Dels=0.00;FS=46.371;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=13;MQRankSum=1.668;QD=7.30;ReadPosRankSum=0.810;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:124,174:300:99:2221,0,1525 chrXIV 600064 . T C 3341.01 filter AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.1850;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=26;QD=14.65;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:3341,348,0 chrXIV 600071 . A T 3350.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=225;Dels=0.00;FS=3.216;HaplotypeScore=5.7077;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=30;MQRankSum=-1.483;QD=14.89;ReadPosRankSum=1.714;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:3350,345,0 chrXIV 600101 . C T 342.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DP=205;Dels=0.00;FS=5.751;HaplotypeScore=17.5161;MLEAC=1;MLEAF=0.500;MQ=31.65;MQ0=25;MQRankSum=0.118;QD=1.67;ReadPosRankSum=-2.021;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:130,74:205:99:372,0,2166 chrXIV 600108 . C T 1918.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;DP=180;Dels=0.00;FS=10.694;HaplotypeScore=9.7387;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=22;MQRankSum=0.438;QD=10.66;ReadPosRankSum=3.398;SB=-8.400e+02 GT:AD:DP:GQ:PL 0/1:61,115:180:99:1948,0,260 chrXIV 600114 . T C 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;DP=156;Dels=0.00;FS=29.861;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=22;MQRankSum=-0.610;QD=0.56;ReadPosRankSum=-2.234;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:106,50:156:99:117,0,1846 chrXIV 600149 . A T 2392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=11;QD=18.26;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2425,261,0 chrXIV 600153 . T G 791.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.433;DP=135;Dels=0.00;FS=122.095;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=12;MQRankSum=-2.170;QD=5.86;ReadPosRankSum=1.264;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:62,73:135:99:821,0,1073 chrXIV 600155 . A G 2275 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=11;MQRankSum=-0.818;QD=16.61;ReadPosRankSum=1.649;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2308,255,0 chrXIV 600165 . C G 2359 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=8;QD=17.87;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2392,261,0 chrXIV 600188 . G A 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DP=176;Dels=0.00;FS=11.798;HaplotypeScore=7.9834;MLEAC=1;MLEAF=0.500;MQ=32.01;MQ0=10;MQRankSum=-3.694;QD=2.21;ReadPosRankSum=-3.075;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:137,37:176:99:419,0,2128 chrXIV 600205 . C T 720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DP=225;Dels=0.00;FS=13.909;HaplotypeScore=7.2480;MLEAC=1;MLEAF=0.500;MQ=31.62;MQ0=8;MQRankSum=-2.816;QD=3.20;ReadPosRankSum=-0.615;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:166,59:225:99:750,0,2855 chrXIV 600236 . G A 1685.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.357;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=17.6302;MLEAC=1;MLEAF=0.500;MQ=31.98;MQ0=9;MQRankSum=-2.255;QD=6.24;ReadPosRankSum=-0.632;SB=-9.240e+02 GT:AD:DP:GQ:PL 0/1:164,105:270:99:1715,0,2863 chrXIV 600259 . A G 5306.01 filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.4358;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=13;QD=20.89;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5306,553,0 chrXIV 600272 . G A 1822.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.509;DP=210;Dels=0.00;FS=22.284;HaplotypeScore=9.4186;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=19;MQRankSum=1.643;QD=8.68;ReadPosRankSum=3.276;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/1:101,109:210:99:1852,0,1566 chrXIV 600283 . A G 1664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;DP=184;Dels=0.00;FS=12.356;HaplotypeScore=7.9101;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=21;MQRankSum=3.092;QD=9.04;ReadPosRankSum=3.648;SB=-7.760e+02 GT:AD:DP:GQ:PL 0/1:80,104:184:99:1694,0,1192 chrXIV 600362 . A G 1414 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=20.28;MQ0=63;MQRankSum=-0.081;QD=9.49;ReadPosRankSum=1.692;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,147:149:99:1447,147,0 chrXIV 600410 . G A 3870.01 filter AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.5167;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=50;QD=15.93;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:3870,400,0 chrXIV 600458 . T C 4734.01 filter AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.8538;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=28;QD=21.04;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4734,490,0 chrXIV 600480 . G A 3215.99 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=27;QD=21.44;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3249,319,0 chrXIV 600500 . C T 2261 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=48;QD=17.39;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2294,222,0 chrXIV 600544 . A G 965 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=107;QD=6.31;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:998,105,0 chrXIV 600716 . G C 2094 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=71;QD=13.51;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2127,222,0 chrXIV 600749 . A G 2436 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=82;QD=13.61;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2469,246,0 chrXIV 600811 . G T 3562.01 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=59;QD=16.80;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3562,352,0 chrXIV 600876 . A C 2582 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0447;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=34;MQRankSum=-1.644;QD=16.99;ReadPosRankSum=1.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2615,259,0 chrXIV 600904 . A G 1545 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=14;MQRankSum=1.069;QD=17.56;ReadPosRankSum=2.905;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1578,159,0 chrXIV 600928 . G C 2549 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=17.9712;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=33;QD=17.58;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2582,264,0 chrXIV 600975 . G A 3066 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=62;QD=17.03;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3099,324,0 chrXIV 601081 . C T 623 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=22;QD=10.93;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:69:656,69,0 chrXIV 601085 . A G 604 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=18;QD=11.62;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:66:637,66,0 chrXIV 601112 . T G 955 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=4;QD=20.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,44:46:99:988,99,0 chrXIV 601195 . T G 3769.01 filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=24;QD=20.37;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3769,399,0 chrXIV 601231 . C T 1686 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.8132;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=26;QD=14.53;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:1719,186,0 chrXIV 601255 . A G 676 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=60;Dels=0.00;FS=7.324;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.24;MQ0=33;MQRankSum=-1.220;QD=11.27;ReadPosRankSum=1.605;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:75:709,75,0 chrXIV 601265 . A G 645 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=27;QD=11.32;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:75:678,75,0 chrXIV 601291 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=33;Dels=0.00;FS=28.543;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=18;MQRankSum=-0.386;QD=0.63;ReadPosRankSum=2.700;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:4,29:33:6:52,6,0 chrXIV 601445 . T C 1924 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=139;Dels=0.00;FS=2.438;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=28;MQRankSum=-2.155;QD=13.84;ReadPosRankSum=2.937;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:1957,204,0 chrXIV 601465 . G A 2190 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=29;QD=14.04;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,152:156:99:2223,228,0 chrXIV 601469 . C T 2220 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=29;QD=13.29;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2253,234,0 chrXIV 601544 . T C 2424 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=42;MQRankSum=2.325;QD=17.31;ReadPosRankSum=3.367;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2457,246,0 chrXIV 601642 . T C 2994 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=191;Dels=0.00;FS=11.360;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.18;MQ0=25;MQRankSum=2.352;QD=15.68;ReadPosRankSum=2.934;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3027,333,0 chrXIV 601652 . G A 3347.01 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=18;QD=16.90;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3347,354,0 chrXIV 601654 . C T 3436.01 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=18;QD=16.84;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3436,366,0 chrXIV 601682 . G A 5685.01 filter AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=8;QD=22.65;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5685,583,0 chrXIV 601776 . A G 3111 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=24;MQRankSum=-1.669;QD=16.55;ReadPosRankSum=1.690;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3144,336,0 chrXIV 601790 . C T 2385 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=129.0481;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=33;QD=13.95;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:2418,261,0 chrXIV 601842 . A G 1492 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=20.71;MQ0=30;QD=9.82;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:1525,165,0 chrXIV 601869 . T C 1909 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=15;QD=10.15;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:1942,210,0 chrXIV 601998 . T C 1711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;DP=206;Dels=0.00;FS=0.717;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=40;MQRankSum=0.163;QD=8.31;ReadPosRankSum=0.291;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:87,118:206:99:1741,0,1306 chrXIV 602111 . G A 3755.01 filter AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.5782;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=15;QD=16.99;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:3755,379,0 chrXIV 602134 . T C 5152.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=244;Dels=0.00;FS=14.379;HaplotypeScore=8.2352;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=22;MQRankSum=-1.241;QD=21.11;ReadPosRankSum=3.318;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:5,237:244:99:5152,514,0 chrXIV 602249 . T G 1258 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=16;QD=7.11;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:1291,144,0 chrXIV 602250 . C T 1301 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=16;QD=7.43;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,174:175:99:1334,144,0 chrXIV 602260 . T G 866 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=20;QD=4.73;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:93:899,93,0 chrXIV 602262 . T A 732 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=20;MQRankSum=-1.732;QD=4.02;ReadPosRankSum=1.689;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,181:182:81:765,81,0 chrXIV 602277 . A G 1202 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=23;QD=5.59;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:1235,126,0 chrXIV 602296 . A G 2470 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=240;Dels=0.00;FS=3.686;HaplotypeScore=12.7146;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=16;MQRankSum=0.437;QD=10.29;ReadPosRankSum=1.701;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:2503,264,0 chrXIV 602396 . A G 225.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=122.9110;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=4;MQRankSum=-1.513;QD=1.39;ReadPosRankSum=1.708;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,145:162:27:258,27,0 chrXIV 602404 . C G 52.97 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=4;QD=0.35;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:9:85,9,0 chrXIV 602521 . C G 3138 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.4879;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=17.63;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3171,330,0 chrXIV 602658 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.289;QD=22.61;ReadPosRankSum=1.710;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3549,355,0 chrXIV 602860 . A T 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=233;Dels=0.00;FS=3.806;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.435;QD=25.79;ReadPosRankSum=1.687;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:6009,607,0 chrXIV 603545 . A G 6762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=268;Dels=0.00;FS=9.229;HaplotypeScore=14.8715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.199;QD=25.23;ReadPosRankSum=2.914;SB=-3.555e+03 GT:AD:DP:GQ:PL 1/1:3,264:268:99:6762,676,0 chrXIV 603709 . G A 8189.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=12.0981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.85;SB=-4.250e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8189,800,0 chrXIV 603842 . C T 5899.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.8712;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.43;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5899,583,0 chrXIV 604247 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.02;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2499,252,0 chrXIV 604471 . A G 328 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;QD=27.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:36:361,36,0 chrXIV 604879 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=2.983;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.094;QD=25.88;ReadPosRankSum=2.396;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2414,249,0 chrXIV 605032 . C G 2835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0009;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2868,303,0 chrXIV 605755 . T A 144.13 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:18:177,18,0 chrXIV 606872 . G A 5289.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.58;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5289,517,0 chrXIV 607577 . A G 5616.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.3417;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.67;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5616,562,0 chrXIV 611511 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.67;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3568,349,0 chrXIV 612523 . T G 4532.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.35;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4532,451,0 chrXIV 612847 . A T 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=7.800;HaplotypeScore=10.0222;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.734;QD=23.93;ReadPosRankSum=2.318;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3565,361,0 chrXIV 613192 . C G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3988,400,0 chrXIV 613268 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4157,412,0 chrXIV 613373 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3442,343,0 chrXIV 613459 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3846,382,0 chrXIV 613773 . T A 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=160;Dels=0.00;FS=2.930;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.023;QD=25.96;ReadPosRankSum=2.388;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:4154,412,0 chrXIV 614336 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=26.21;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3329,334,0 chrXIV 614340 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=26.14;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3372,337,0 chrXIV 614500 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.92;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2497,246,0 chrXIV 614559 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=3.597;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.538;QD=15.91;ReadPosRankSum=1.613;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,86:90:99:1465,174,0 chrXIV 614560 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.96;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1542,183,0 chrXIV 614583 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=105;Dels=0.00;FS=8.615;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.310;QD=21.77;ReadPosRankSum=3.306;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:4,101:105:99:2319,231,0 chrXIV 614689 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.94;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3421,346,0 chrXIV 614760 . T A 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=2.885;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-1.354;QD=24.59;ReadPosRankSum=2.367;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3640,381,0 chrXIV 614792 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=6.529;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=0.647;QD=24.03;ReadPosRankSum=2.384;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3605,367,0 chrXIV 614815 . G T 3096 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.50;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3129,327,0 chrXIV 614817 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=158;Dels=0.00;FS=6.028;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=-0.204;QD=19.15;ReadPosRankSum=2.930;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3058,327,0 chrXIV 614945 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=2.931;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.431;QD=24.25;ReadPosRankSum=2.401;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3735,382,0 chrXIV 614958 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=24.64;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3794,382,0 chrXIV 614988 . A T 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=3.012;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.295;QD=20.49;ReadPosRankSum=2.402;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3188,330,0 chrXIV 615001 . T G 3048 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.46;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3081,315,0 chrXIV 615324 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.50;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3221,316,0 chrXIV 615522 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=7.406;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.205;QD=26.13;ReadPosRankSum=2.372;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3319,334,0 chrXIV 615555 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.10;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3903,385,0 chrXIV 615762 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.60;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4096,415,0 chrXIV 616014 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.31;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2574,261,0 chrXIV 616020 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.23;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2453,252,0 chrXIV 616069 . A G 3138 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.07;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3171,327,0 chrXIV 616166 . A G 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.093;QD=18.53;ReadPosRankSum=1.701;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2108,237,0 chrXIV 616170 . T A 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.608;QD=18.11;ReadPosRankSum=1.671;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2098,234,0 chrXIV 616622 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.86;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3706,361,0 chrXIV 617566 . A G 2376 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2409,243,0 chrXIV 618121 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.01;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3978,391,0 chrXIV 618448 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.509;QD=23.34;ReadPosRankSum=1.691;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2017,207,0 chrXIV 618475 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.27;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1476,147,0 chrXIV 618548 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.01;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2296,225,0 chrXIV 619096 . T G 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DP=198;Dels=0.00;FS=7.489;HaplotypeScore=5.4869;MLEAC=1;MLEAF=0.500;MQ=44.83;MQ0=0;MQRankSum=-11.930;QD=0.36;ReadPosRankSum=-3.157;SB=-8.930e+02 GT:AD:DP:GQ:PL 0/1:106,92:198:99:102,0,1927 chrXIV 619101 . T A 57.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.427;DP=207;Dels=0.00;FS=3.403;HaplotypeScore=8.2757;MLEAC=1;MLEAF=0.500;MQ=43.96;MQ0=0;MQRankSum=-11.322;QD=0.28;ReadPosRankSum=-0.278;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:101,100:207:87:87,0,1778 chrXIV 619110 . T A 222.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.524;DP=214;Dels=0.00;FS=6.110;HaplotypeScore=12.4970;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=0;MQRankSum=-10.517;QD=1.04;ReadPosRankSum=3.781;SB=-8.740e+02 GT:AD:DP:GQ:PL 0/1:83,131:214:99:252,0,1271 chrXIV 619113 . T A 416.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.386;DP=213;Dels=0.00;FS=6.227;HaplotypeScore=9.2985;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-9.862;QD=1.95;ReadPosRankSum=4.665;SB=-1.087e+03 GT:AD:DP:GQ:PL 0/1:75,136:213:99:446,0,1168 chrXIV 619117 . G T 536.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;DP=215;Dels=0.00;FS=1.866;HaplotypeScore=11.7882;MLEAC=1;MLEAF=0.500;MQ=41.68;MQ0=0;MQRankSum=-8.764;QD=2.49;ReadPosRankSum=6.439;SB=-1.466e+03 GT:AD:DP:GQ:PL 0/1:67,148:215:99:566,0,842 chrXIV 619281 . G C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8312;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=20.72;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3585,355,0 chrXIV 623312 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.09;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3487,346,0 chrXIV 623418 . G A 5589.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5589,556,0 chrXIV 624158 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.73;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4323,418,0 chrXIV 629832 . T G 4106.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.99;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4106,415,0 chrXIV 633683 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=130;Dels=0.00;FS=2.984;HaplotypeScore=11.9953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.707;QD=24.39;ReadPosRankSum=2.372;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:3204,322,0 chrXIV 635688 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8857;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.49;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1904,189,0 chrXIV 637729 . G C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3805,391,0 chrXIV 640932 . T C 4661.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4661,478,0 chrXIV 644338 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2129,225,0 chrXIV 646799 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4503,469,0 chrXIV 646869 . T G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=2.932;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.765;QD=24.47;ReadPosRankSum=2.351;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4306,451,0 chrXIV 647174 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.1117;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.53;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2903,289,0 chrXIV 648908 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.83;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2690,270,0 chrXIV 650945 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.6799;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4287,424,0 chrXIV 651849 . C T 855 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=49.7437;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=16.13;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:93:888,93,0 chrXIV 651964 . G A 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4292;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.559;QD=19.14;ReadPosRankSum=2.754;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:3,75:79:99:1545,150,0 chrXIV 652238 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.26;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2904,289,0 chrXIV 653557 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.97;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4670,466,0 chrXIV 653593 . G A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.1574;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.85;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4572,463,0 chrXIV 653635 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.127;QD=24.46;ReadPosRankSum=1.711;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4133,424,0 chrXIV 657133 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=165;Dels=0.00;FS=9.077;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=22.58;ReadPosRankSum=2.345;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3726,376,0 chrXIV 657202 . C A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4143,418,0 chrXIV 657547 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=25.28;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3893,406,0 chrXIV 657606 . A C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-1.711;QD=22.67;ReadPosRankSum=1.691;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3831,400,0 chrXIV 657610 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=9.345;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.173;QD=22.61;ReadPosRankSum=2.959;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3867,397,0 chrXIV 657739 . A T 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.515;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.542;QD=27.12;ReadPosRankSum=1.669;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4448,436,0 chrXIV 661603 . A T 2363 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.97;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2396,246,0 chrXIV 661983 . C T 5830.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.5157;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.12;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5830,583,0 chrXIV 662512 . C A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.9401;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.64;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4468,442,0 chrXIV 664821 . A T 5042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=222;Dels=0.00;FS=2.867;HaplotypeScore=16.1377;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.139;QD=22.71;ReadPosRankSum=2.405;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5042,531,0 chrXIV 665017 . C G 2566 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.69;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2599,267,0 chrXIV 665036 . G T 2185 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.30;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2218,222,0 chrXIV 665097 . T A 1891 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.94;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1924,189,0 chrXIV 667216 . C T 1682 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1715,174,0 chrXIV 671135 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.26;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4124,433,0 chrXIV 671892 . C T 4646.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4646,466,0 chrXIV 672281 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2067,210,0 chrXIV 674671 . T G 3774.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3774,385,0 chrXIV 675714 . C G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4219,436,0 chrXIV 676368 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=131;Dels=0.00;FS=11.108;HaplotypeScore=11.1190;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.124;QD=23.48;ReadPosRankSum=2.869;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3109,313,0 chrXIV 676470 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0399;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.42;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3778,376,0 chrXIV 676652 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=164;Dels=0.00;FS=8.215;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.011;QD=25.49;ReadPosRankSum=2.330;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4180,421,0 chrXIV 676731 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.11;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4387,433,0 chrXIV 676834 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=178;Dels=0.00;FS=2.677;HaplotypeScore=16.7118;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.119;QD=24.56;ReadPosRankSum=2.422;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:4372,439,0 chrXIV 676905 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.25;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3557,349,0 chrXIV 676917 . A C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.653;QD=22.42;ReadPosRankSum=1.707;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3127,313,0 chrXIV 677203 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=2.836;HaplotypeScore=3.0588;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.984;QD=20.69;ReadPosRankSum=2.398;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3952,400,0 chrXIV 677207 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.59;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3930,388,0 chrXIV 677352 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.22;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3585,355,0 chrXIV 677422 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.58;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3432,346,0 chrXIV 677438 . T A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.08;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3378,337,0 chrXIV 677530 . G T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=27.08;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3277,322,0 chrXIV 677609 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=25.70;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3290,331,0 chrXIV 677649 . C G 3109 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.48;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3142,313,0 chrXIV 677799 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=183;Dels=0.00;FS=9.768;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-0.247;QD=21.26;ReadPosRankSum=2.918;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3891,408,0 chrXIV 677807 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.52;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3831,379,0 chrXIV 677841 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=161;Dels=0.00;FS=3.033;HaplotypeScore=12.9558;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.458;QD=21.94;ReadPosRankSum=2.083;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3533,355,0 chrXIV 677958 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=23.68;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4262,424,0 chrXIV 677964 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.32;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4057,423,0 chrXIV 677985 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.00;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3300,331,0 chrXIV 678027 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.97;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2626,264,0 chrXIV 678108 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8911;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.11;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3263,325,0 chrXIV 678144 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.25;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2923,289,0 chrXIV 678304 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.19;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2767,285,0 chrXIV 678306 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.22;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2900,292,0 chrXIV 678322 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.56;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2400,240,0 chrXIV 678582 . T C 388 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.82;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:421,45,0 chrXIV 678759 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=27.30;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3091,310,0 chrXIV 678891 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=184;Dels=0.00;FS=6.593;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.794;QD=22.05;ReadPosRankSum=2.422;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:4057,424,0 chrXIV 679026 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.34;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2892,294,0 chrXIV 679089 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.34;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3222,316,0 chrXIV 686681 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4607,475,0 chrXIV 686786 . T C 5027.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0036;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.46;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:5027,517,0 chrXIV 686858 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.59;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4467,448,0 chrXIV 687304 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3215,331,0 chrXIV 688148 . G T 5511.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.16;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5511,541,0 chrXIV 688149 . A T 5552.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=2.824;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.665;QD=23.33;ReadPosRankSum=2.398;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5552,544,0 chrXIV 688150 . A C 5280.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.523;QD=22.18;ReadPosRankSum=1.717;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,234:238:99:5280,547,0 chrXIV 688572 . C G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.63;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3423,346,0 chrXIV 689029 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=6.516;HaplotypeScore=8.2214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.231;QD=25.03;ReadPosRankSum=2.386;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3855,397,0 chrXIV 689057 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.585;QD=24.20;ReadPosRankSum=1.710;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3727,373,0 chrXIV 689310 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=25.11;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3071,315,0 chrXIV 689558 . C A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.15;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4907,505,0 chrXIV 689569 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.13;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4757,463,0 chrXIV 689582 . C G 4712.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.31;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4712,478,0 chrXIV 689944 . C G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1121;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.18;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3547,364,0 chrXIV 689964 . A C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.68;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3628,364,0 chrXIV 689983 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6449;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.280;QD=22.30;ReadPosRankSum=1.681;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3133,327,0 chrXIV 690162 . T G 1471 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=25.81;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1504,156,0 chrXIV 690428 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.24;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3786,397,0 chrXIV 691067 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=26.19;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4191,418,0 chrXIV 691115 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.64;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3991,406,0 chrXIV 691294 . A G 103.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.688;DP=114;Dels=0.00;FS=15.227;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.473;QD=0.91;ReadPosRankSum=-4.645;SB=-8.026e+01 GT:AD:DP:GQ:PL 1/1:105,9:114:15:136,15,0 chrXIV 692612 . C T 4473.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.96;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4473,448,0 chrXIV 694242 . T A 290 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=11.60;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:33:323,33,0 chrXIV 694273 . T C 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.252;QD=20.32;ReadPosRankSum=2.810;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:3,34:37:84:785,84,0 chrXIV 694765 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.378;QD=23.45;ReadPosRankSum=1.653;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4128,415,0 chrXIV 694868 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3503,352,0 chrXIV 695239 . C T 5005.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.17;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5005,508,0 chrXIV 695488 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.42;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3705,370,0 chrXIV 695752 . A T 8019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=299;Dels=0.00;FS=3.522;HaplotypeScore=11.8544;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.461;QD=26.82;ReadPosRankSum=1.674;SB=-3.920e+03 GT:AD:DP:GQ:PL 1/1:1,297:299:99:8019,802,0 chrXIV 695952 . G A 6052.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.9875;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.97;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6052,592,0 chrXIV 696647 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.68;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3737,367,0 chrXIV 696989 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5765;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.71;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3312,340,0 chrXIV 697058 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.11;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3786,376,0 chrXIV 697554 . A T 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=104;Dels=0.03;FS=7.077;HaplotypeScore=21.8030;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.378;QD=17.73;ReadPosRankSum=2.377;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1877,195,0 chrXIV 697678 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=9.606;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.327;QD=25.58;ReadPosRankSum=2.414;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3530,352,0 chrXIV 698189 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4836,481,0 chrXIV 698660 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3144,307,0 chrXIV 698696 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.9142;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.39;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3479,343,0 chrXIV 698753 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=128;Dels=0.00;FS=5.942;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.579;QD=24.23;ReadPosRankSum=2.945;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:3134,324,0 chrXIV 699116 . C T 4855.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.3662;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.79;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4855,484,0 chrXIV 699152 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.71;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4844,496,0 chrXIV 699228 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.38;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4956,502,0 chrXIV 699488 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.84;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3552,349,0 chrXIV 700166 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=169;Dels=0.00;FS=2.577;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.413;QD=24.43;ReadPosRankSum=-0.359;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:4128,418,0 chrXIV 700405 . T A 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=2.884;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.454;QD=25.94;ReadPosRankSum=2.337;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3969,397,0 chrXIV 701567 . T A 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.272;QD=21.78;ReadPosRankSum=1.681;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4444,463,0 chrXIV 701618 . G T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.44;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3752,379,0 chrXIV 702049 . C T 7806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=16.1544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.405;QD=25.34;ReadPosRankSum=0.468;SB=-4.069e+03 GT:AD:DP:GQ:PL 1/1:1,306:308:99:7806,764,0 chrXIV 702991 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.4137;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.09;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3261,322,0 chrXIV 703330 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.01;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3276,337,0 chrXIV 703407 . C A 3043 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3076,310,0 chrXIV 703536 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2794,285,0 chrXIV 703603 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.09;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2825,285,0 chrXIV 703883 . G A 6124.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.79;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:6124,607,0 chrXIV 703887 . T C 5818.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.34;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:5818,598,0 chrXIV 703949 . G C 6519.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=26.7462;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.23;SB=-3.767e+03 GT:AD:DP:GQ:PL 1/1:0,334:339:99:6519,661,0 chrXIV 704094 . T C 8209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=336;Dels=0.00;FS=9.076;HaplotypeScore=15.0605;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=1.435;QD=24.43;ReadPosRankSum=3.394;SB=-4.645e+03 GT:AD:DP:GQ:PL 1/1:4,330:336:99:8209,832,0 chrXIV 704114 . C G 6888.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=11.3720;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=23.59;SB=-3.906e+03 GT:AD:DP:GQ:PL 1/1:0,288:292:99:6888,703,0 chrXIV 704248 . A G 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.778;DP=262;Dels=0.00;FS=11.177;HaplotypeScore=12.4923;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;MQRankSum=-2.634;QD=19.98;ReadPosRankSum=3.814;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:5,257:262:99:5235,561,0 chrXIV 704280 . C T 2077 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=15.05;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2110,234,0 chrXIV 704283 . T G 1810 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=14.84;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,118:122:99:1843,207,0 chrXIV 704289 . T C 1278 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=13.60;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1311,156,0 chrXIV 704296 . C T 726 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=11.52;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:78:759,78,0 chrXIV 704301 . C T 512 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.22;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:54:545,54,0 chrXIV 704303 . C T 472 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.077;QD=12.76;ReadPosRankSum=1.639;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:54:505,54,0 chrXIV 704304 . T G 470 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.70;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:503,54,0 chrXIV 704310 . T C 309 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.8195;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.040;QD=10.30;ReadPosRankSum=0.000;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:39:342,39,0 chrXIV 704313 . C A 224.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.8195;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.74;SB=-2.378e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:257,27,0 chrXIV 704316 . A T 79.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.211;QD=4.42;ReadPosRankSum=2.178;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:2,16:18:12:112,12,0 chrXIV 704346 . G T 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.844;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;MQRankSum=-0.666;QD=0.85;ReadPosRankSum=-1.733;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:9:65,9,0 chrXIV 704366 . C T 150.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=154;Dels=0.00;FS=8.558;HaplotypeScore=80.4387;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=0;MQRankSum=-0.002;QD=0.97;ReadPosRankSum=-4.614;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:124,30:154:99:180,0,697 chrXIV 704367 . G A 93.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;DP=159;Dels=0.00;FS=14.352;HaplotypeScore=85.2048;MLEAC=1;MLEAF=0.500;MQ=33.87;MQ0=0;MQRankSum=-2.154;QD=0.58;ReadPosRankSum=9.789;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:102,54:159:99:123,0,781 chrXIV 704373 . T C 238.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=189;Dels=0.00;FS=17.454;HaplotypeScore=127.1716;MLEAC=1;MLEAF=0.500;MQ=33.58;MQ0=0;MQRankSum=-0.784;QD=1.26;ReadPosRankSum=-3.836;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:150,39:189:99:268,0,950 chrXIV 704379 . T C 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DP=224;Dels=0.00;FS=6.880;HaplotypeScore=183.3039;MLEAC=1;MLEAF=0.500;MQ=33.06;MQ0=0;MQRankSum=-2.490;QD=0.13;ReadPosRankSum=10.374;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:164,55:224:59:59,0,1393 chrXIV 704380 . C T 438.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;DP=229;Dels=0.00;FS=29.295;HaplotypeScore=183.3039;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=0.488;QD=1.91;ReadPosRankSum=-5.780;SB=-4.860e+02 GT:AD:DP:GQ:PL 0/1:162,67:229:99:468,0,1151 chrXIV 704388 . G T 466.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=300;Dels=0.00;FS=22.148;HaplotypeScore=98.6413;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=-1.129;QD=1.55;ReadPosRankSum=-5.267;SB=-5.790e+02 GT:AD:DP:GQ:PL 0/1:182,80:300:99:496,0,1370 chrXIV 704394 . C T 876.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.757;DP=345;Dels=0.00;FS=53.542;HaplotypeScore=40.0323;MLEAC=1;MLEAF=0.500;MQ=31.77;MQ0=0;MQRankSum=-1.199;QD=2.54;ReadPosRankSum=-7.287;SB=-1.066e+03 GT:AD:DP:GQ:PL 0/1:196,149:345:99:906,0,1539 chrXIV 704400 . T C 1098.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=385;Dels=0.00;FS=44.081;HaplotypeScore=110.3954;MLEAC=1;MLEAF=0.500;MQ=31.42;MQ0=0;MQRankSum=-2.283;QD=2.85;ReadPosRankSum=-4.992;SB=-1.503e+03 GT:AD:DP:GQ:PL 0/1:211,174:385:99:1128,0,1677 chrXIV 704401 . T C 1090.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;DP=390;Dels=0.00;FS=41.598;HaplotypeScore=113.5502;MLEAC=1;MLEAF=0.500;MQ=31.39;MQ0=0;MQRankSum=-0.492;QD=2.79;ReadPosRankSum=-3.686;SB=-1.477e+03 GT:AD:DP:GQ:PL 0/1:216,174:390:99:1120,0,1678 chrXIV 704408 . T C 1478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;DP=450;Dels=0.00;FS=46.765;HaplotypeScore=287.6799;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=0;MQRankSum=-2.324;QD=3.28;ReadPosRankSum=-4.606;SB=-2.702e+03 GT:AD:DP:GQ:PL 0/1:160,290:450:99:1508,0,1556 chrXIV 704417 . C T 1125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;DP=487;Dels=0.00;FS=7.781;HaplotypeScore=379.4686;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=1.097;QD=2.31;ReadPosRankSum=-0.804;SB=-1.898e+03 GT:AD:DP:GQ:PL 0/1:286,200:487:99:1155,0,2249 chrXIV 704439 . A C 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=467;Dels=0.00;FS=30.862;HaplotypeScore=88.3211;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=-0.495;QD=0.12;ReadPosRankSum=5.865;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:388,79:467:87:87,0,3593 chrXIV 704444 . A C,T 3979.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.381;DP=452;Dels=0.00;FS=15.017;HaplotypeScore=17.2078;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.66;MQ0=0;MQRankSum=-1.490;QD=8.80;ReadPosRankSum=2.974;SB=-4.970e+03 GT:AD:DP:GQ:PL 1/2:4,117,331:452:99:3979,2507,2336,1472,0,1180 chrXIV 704451 . T G 880.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;DP=431;Dels=0.00;FS=11.133;HaplotypeScore=91.0539;MLEAC=1;MLEAF=0.500;MQ=29.62;MQ0=0;MQRankSum=-0.305;QD=2.04;ReadPosRankSum=-5.025;SB=-5.540e+02 GT:AD:DP:GQ:PL 0/1:331,94:431:99:910,0,2218 chrXIV 704457 . T C 392.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=378;Dels=0.00;FS=3.094;HaplotypeScore=257.5133;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=-0.699;QD=1.04;ReadPosRankSum=-4.122;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:313,65:378:99:422,0,2056 chrXIV 704459 . C T 880.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;DP=367;Dels=0.00;FS=6.339;HaplotypeScore=251.5819;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-1.729;QD=2.40;ReadPosRankSum=-6.060;SB=-1.028e+03 GT:AD:DP:GQ:PL 0/1:227,140:367:99:910,0,1560 chrXIV 704460 . C A 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;DP=363;Dels=0.00;FS=6.822;HaplotypeScore=248.6006;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=0.454;QD=0.92;ReadPosRankSum=-5.045;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:301,62:363:99:363,0,2055 chrXIV 704463 . A T 437.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DP=366;Dels=0.00;FS=2.275;HaplotypeScore=246.7335;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=1.288;QD=1.19;ReadPosRankSum=-6.478;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:296,70:366:99:467,0,2068 chrXIV 704472 . G A,T 2371.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.51;MQ0=0;QD=7.53;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/2:0,249,66:315:99:2431,616,409,1815,0,1740 chrXIV 704484 . T C 1557.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.168;DP=238;Dels=0.00;FS=24.657;HaplotypeScore=53.9797;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=2.328;QD=6.54;ReadPosRankSum=4.740;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:32,206:238:27:1590,27,0 chrXIV 704486 . C T 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=236;Dels=0.00;FS=2.782;HaplotypeScore=56.6785;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=-0.099;QD=0.65;ReadPosRankSum=-2.366;SB=-1.810e+02 GT:AD:DP:GQ:PL 0/1:182,54:236:99:183,0,1257 chrXIV 704490 . C T 2173 SnpCluster AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=52.9017;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=9.92;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:2206,225,0 chrXIV 704493 . T G 969.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=219;Dels=0.00;FS=9.909;HaplotypeScore=51.2757;MLEAC=1;MLEAF=0.500;MQ=30.85;MQ0=0;MQRankSum=-0.925;QD=4.42;ReadPosRankSum=4.794;SB=-1.201e+03 GT:AD:DP:GQ:PL 0/1:106,113:219:99:999,0,787 chrXIV 704499 . T C 673.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;DP=202;Dels=0.00;FS=5.952;HaplotypeScore=23.8591;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-0.356;QD=3.33;ReadPosRankSum=0.431;SB=-8.350e+02 GT:AD:DP:GQ:PL 0/1:110,92:202:99:703,0,1058 chrXIV 704501 . C T 1079.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=22.8612;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=0.363;QD=5.19;ReadPosRankSum=2.922;SB=-1.095e+03 GT:AD:DP:GQ:PL 0/1:100,108:208:99:1109,0,749 chrXIV 704502 . C A 600.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DP=198;Dels=0.00;FS=1.125;HaplotypeScore=15.8202;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=0;MQRankSum=-2.268;QD=3.03;ReadPosRankSum=-1.855;SB=-7.450e+02 GT:AD:DP:GQ:PL 0/1:113,82:198:99:630,0,1343 chrXIV 704505 . A T 405.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0540;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=0;MQRankSum=-0.138;QD=2.11;ReadPosRankSum=-2.869;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:123,69:192:99:435,0,1507 chrXIV 704514 . A T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DP=183;Dels=0.00;FS=2.289;HaplotypeScore=14.2639;MLEAC=1;MLEAF=0.500;MQ=36.21;MQ0=0;MQRankSum=-1.402;QD=0.16;ReadPosRankSum=-6.071;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:145,38:183:60:60,0,2085 chrXIV 705005 . C A 7699.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=19.0022;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.92;SB=-4.176e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:7699,757,0 chrXIV 705188 . G A 7478.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.18;SB=-4.132e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:7478,736,0 chrXIV 705401 . T C 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=277;Dels=0.00;FS=3.602;HaplotypeScore=22.5982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.354;QD=21.80;ReadPosRankSum=1.707;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:1,274:277:99:6038,607,0 chrXIV 705531 . A G 5618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.099;QD=24.64;ReadPosRankSum=1.702;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5618,583,0 chrXIV 705570 . C A 5537.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.2132;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.50;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5537,553,0 chrXIV 705671 . T C 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=222;Dels=0.00;FS=3.028;HaplotypeScore=15.5034;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.230;QD=21.19;ReadPosRankSum=2.360;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4704,478,0 chrXIV 705870 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.26;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2563,264,0 chrXIV 706528 . T G 5570.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.01;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5570,574,0 chrXIV 706575 . A T 6498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=254;Dels=0.00;FS=2.702;HaplotypeScore=14.7838;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.326;QD=25.58;ReadPosRankSum=2.372;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:6498,646,0 chrXIV 707137 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3882,385,0 chrXIV 707187 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3978,388,0 chrXIV 707509 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.49;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3829,382,0 chrXIV 707765 . A G 6105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=5.147;HaplotypeScore=13.9022;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.643;QD=26.54;ReadPosRankSum=1.672;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:6105,628,0 chrXIV 708870 . C T 6028.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.1267;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.32;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:6028,589,0 chrXIV 709208 . C A 7126.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=21.7953;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.40;SB=-3.721e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:7126,718,0 chrXIV 709317 . C T 5376.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5376,535,0 chrXIV 709675 . G A 5460.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.05;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5460,550,0 chrXIV 709906 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=3.565;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.069;QD=21.78;ReadPosRankSum=1.621;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2799,277,0 chrXIV 710457 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.52;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3952,388,0 chrXIV 713668 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.688;HaplotypeScore=11.8790;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.399;QD=24.41;ReadPosRankSum=1.710;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3857,388,0 chrXIV 713710 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.52;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3146,313,0 chrXIV 715622 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.331;QD=27.02;ReadPosRankSum=1.630;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3675,370,0 chrXIV 716316 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.63;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1889,189,0 chrXIV 716325 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.40;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1928,198,0 chrXIV 716564 . G A 718 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.94;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:751,78,0 chrXIV 717120 . T G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3408,340,0 chrXIV 717528 . T A 4531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.230;QD=26.19;ReadPosRankSum=1.652;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4531,445,0 chrXIV 717904 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=3.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.267;QD=25.88;ReadPosRankSum=2.407;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3009,298,0 chrXIV 718496 . A G 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.155;QD=25.15;ReadPosRankSum=1.694;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2322,237,0 chrXIV 718557 . A T 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.522;QD=22.93;ReadPosRankSum=1.690;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1936,198,0 chrXIV 718667 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.52;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1969,195,0 chrXIV 720706 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.840;QD=24.44;ReadPosRankSum=2.384;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2795,285,0 chrXIV 721994 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.95;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2135,210,0 chrXIV 722228 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.25;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2385,246,0 chrXIV 722597 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.35;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4554,448,0 chrXIV 722746 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.7160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4536,457,0 chrXIV 723138 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2568,255,0 chrXIV 724562 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.733;QD=25.24;ReadPosRankSum=1.701;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2835,291,0 chrXIV 725113 . T A 2384 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2417,240,0 chrXIV 725513 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=139;Dels=0.00;FS=7.068;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.175;QD=24.27;ReadPosRankSum=2.414;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:3374,349,0 chrXIV 725751 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.54;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3218,319,0 chrXIV 726075 . G T 2601 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=25.25;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2634,270,0 chrXIV 726118 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=90;Dels=0.00;FS=2.397;HaplotypeScore=9.6991;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-0.598;QD=21.97;ReadPosRankSum=2.759;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:3,86:90:99:2010,204,0 chrXIV 726269 . T A 1012 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=21.53;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1045,105,0 chrXIV 726271 . T A 1007 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=22.38;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1040,105,0 chrXIV 726272 . T C 971 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=21.58;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1004,105,0 chrXIV 726274 . A T 1022 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=22.71;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1055,105,0 chrXIV 726275 . G C 988 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=1;QD=21.48;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1021,105,0 chrXIV 726336 . C T 928 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=13;QD=13.45;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:13,56:69:99:961,102,0 chrXIV 726345 . T G 1076 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=13;QD=13.97;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:12,65:77:99:1109,114,0 chrXIV 726350 . C T 1192 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.018;DP=81;Dels=0.00;FS=12.273;HaplotypeScore=1.9290;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=13;MQRankSum=-0.055;QD=14.72;ReadPosRankSum=1.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,66:81:99:1225,120,0 chrXIV 726410 . G A 560 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=52;Dels=0.00;FS=8.523;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=4;MQRankSum=4.872;QD=10.77;ReadPosRankSum=-1.740;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:17,35:52:60:593,60,0 chrXIV 726427 . C T 349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.581;DP=38;Dels=0.00;FS=1.461;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;MQRankSum=4.883;QD=9.18;ReadPosRankSum=-2.497;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:12,26:38:39:382,39,0 chrXIV 726489 . T C 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=18;MQRankSum=-0.347;QD=1.50;ReadPosRankSum=1.561;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:16,22:39:12:91,12,0 chrXIV 726490 . G C 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=18;MQRankSum=-0.347;QD=1.54;ReadPosRankSum=1.561;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:17,21:38:12:91,12,0 chrXIV 726518 . C G 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=39;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=19;MQRankSum=-1.734;QD=1.50;ReadPosRankSum=0.694;SB=-1.645e+01 GT:AD:DP:GQ:PL 1/1:18,21:39:12:91,12,0 chrXIV 726523 . T C 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=39;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=19;MQRankSum=-1.734;QD=1.50;ReadPosRankSum=-0.173;SB=-1.645e+01 GT:AD:DP:GQ:PL 1/1:18,21:39:12:91,12,0 chrXIV 726525 . T G 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=39;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=19;MQRankSum=-1.734;QD=1.50;ReadPosRankSum=-1.387;SB=-1.645e+01 GT:AD:DP:GQ:PL 1/1:18,21:39:12:91,12,0 chrXIV 727465 . C G 879 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:912,93,0 chrXIV 728432 . A C 3940.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3940,397,0 chrXIV 728933 . G C 4664.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4664,493,0 chrXIV 729083 . T G 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=8.221;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.020;QD=24.70;ReadPosRankSum=2.394;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4396,448,0 chrXIV 729498 . C G 5865.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5865,592,0 chrXIV 730596 . G C 2085 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.74;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2118,219,0 chrXIV 730652 . G T 2054 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.36;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2087,204,0 chrXIV 730693 . A G 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=77;Dels=0.00;FS=7.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.022;QD=24.91;ReadPosRankSum=2.353;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1951,198,0 chrXIV 730789 . A G 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.144;QD=24.81;ReadPosRankSum=1.540;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1819,183,0 chrXIV 730853 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.45;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1556,159,0 chrXIV 730973 . A G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.257;QD=25.82;ReadPosRankSum=1.664;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1350,135,0 chrXIV 731177 . A T 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.592;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.258;QD=27.38;ReadPosRankSum=1.659;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2634,256,0 chrXIV 731231 . A G 3136 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.2899;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=27.03;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3169,316,0 chrXIV 731927 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.2106;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.504;QD=24.88;ReadPosRankSum=1.628;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4179,433,0 chrXIV 732035 . C A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.23;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4303,424,0 chrXIV 732854 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1777;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.97;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3295,342,0 chrXIV 732856 . A C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0211;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.027;QD=21.64;ReadPosRankSum=2.645;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3289,345,0 chrXIV 733411 . T G 5758.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5758,601,0 chrXIV 733695 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.7712;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.479;QD=21.33;ReadPosRankSum=1.648;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4372,448,0 chrXIV 734731 . T C 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.833;QD=25.10;ReadPosRankSum=1.713;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4643,481,0 chrXIV 734836 . C T 5592.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.0491;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.19;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5592,559,0 chrXIV 735429 . C T 5025.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.5249;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.04;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,203:209:99:5025,511,0 chrXIV 735889 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2960,289,0 chrXIV 737420 . A T 3021 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.82;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3054,301,0 chrXIV 739944 . C A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4419,439,0 chrXIV 741004 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2931,300,0 chrXIV 741650 . T C 5199.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.12;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5199,520,0 chrXIV 742120 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.33;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2459,252,0 chrXIV 742457 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2070,204,0 chrXIV 744856 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=142;Dels=0.00;FS=5.649;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.093;QD=21.75;ReadPosRankSum=2.936;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3122,316,0 chrXIV 745342 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.879;QD=24.57;ReadPosRankSum=1.707;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3440,352,0 chrXIV 745595 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.979;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=24.85;ReadPosRankSum=0.996;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:2046,216,0 chrXIV 746254 . T G 2415 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=23.91;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2448,246,0 chrXIV 746278 . T G 1652 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=18.99;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1685,171,0 chrXIV 746282 . T A 1522 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=5.211;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.104;QD=18.34;ReadPosRankSum=1.690;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1555,159,0 chrXIV 746283 . T G 1550 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.67;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1583,159,0 chrXIV 746543 . A G 2460 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5971;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.74;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2493,249,0 chrXIV 746927 . G T 2841 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2874,286,0 chrXIV 750384 . G A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.20;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4689,460,0 chrXIV 750743 . C A 2770 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=22.52;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2803,280,0 chrXIV 750744 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=23.00;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2839,280,0 chrXIV 750761 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=1;QD=19.58;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2128,213,0 chrXIV 750775 . A G 1589 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=1;MQRankSum=0.550;QD=18.48;ReadPosRankSum=1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1622,165,0 chrXIV 750776 . T C 1652 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=1;QD=19.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1685,165,0 chrXIV 750779 . T A 1645 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=36.026;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=1;MQRankSum=0.835;QD=18.08;ReadPosRankSum=2.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1678,171,0 chrXIV 750800 . T C 1459 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;DP=82;Dels=0.00;FS=49.311;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=1;MQRankSum=1.813;QD=17.79;ReadPosRankSum=0.638;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,78:82:76:1492,76,0 chrXIV 750821 . T C 1229 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DP=82;Dels=0.00;FS=61.991;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=2;MQRankSum=1.313;QD=14.99;ReadPosRankSum=-1.137;SB=-8.252e-03 GT:AD:DP:GQ:PL 1/1:6,76:82:37:1262,37,0 chrXIV 750833 . A G 1327 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.882;DP=86;Dels=0.00;FS=62.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=3;MQRankSum=2.413;QD=15.43;ReadPosRankSum=-2.158;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:7,79:86:54:1360,54,0 chrXIV 750840 . G A 1288 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=87;Dels=0.00;FS=62.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=3;MQRankSum=1.733;QD=14.80;ReadPosRankSum=-2.174;SB=-6.606e-03 GT:AD:DP:GQ:PL 1/1:7,80:87:50:1321,50,0 chrXIV 750848 . G A 1074.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.302;DP=82;Dels=0.00;FS=61.768;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=3;MQRankSum=2.068;QD=13.10;ReadPosRankSum=-1.241;SB=-2.026e-02 GT:AD:DP:GQ:PL 1/1:7,75:82:28:1107,28,0 chrXIV 750850 . A G 1063.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.372;DP=83;Dels=0.00;FS=54.778;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=3;MQRankSum=1.218;QD=12.81;ReadPosRankSum=-0.171;SB=-3.390e-02 GT:AD:DP:GQ:PL 1/1:8,74:83:25:1096,25,0 chrXIV 750867 . G A 995.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;DP=78;Dels=0.00;FS=92.977;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=3;MQRankSum=1.739;QD=12.76;ReadPosRankSum=2.031;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,68:78:60:1025,0,60 chrXIV 750875 . A C 746.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DP=72;Dels=0.00;FS=89.680;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=3;MQRankSum=1.577;QD=10.36;ReadPosRankSum=3.020;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,60:72:53:776,0,53 chrXIV 750888 . G A 695.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=73;Dels=0.00;FS=142.861;HaplotypeScore=2.6517;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=3;MQRankSum=-0.198;QD=9.52;ReadPosRankSum=2.327;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,56:73:47:725,0,47 chrXIV 750902 . A G 508.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;DP=69;Dels=0.00;FS=145.466;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=3;MQRankSum=0.296;QD=7.36;ReadPosRankSum=1.265;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,43:69:99:538,0,179 chrXIV 750904 . A G 238.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DP=68;Dels=0.00;FS=166.139;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=3;MQRankSum=-0.272;QD=3.50;ReadPosRankSum=0.529;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:43,24:68:99:268,0,508 chrXIV 750905 . A G 891 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=3;MQRankSum=-1.678;QD=13.10;ReadPosRankSum=1.678;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:93:924,93,0 chrXIV 750914 . C T 263.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;DP=59;Dels=0.00;FS=139.980;HaplotypeScore=3.0453;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=4;MQRankSum=-1.209;QD=4.46;ReadPosRankSum=0.566;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,26:59:99:293,0,383 chrXIV 750915 . C T 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;DP=59;Dels=0.00;FS=153.960;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=4;MQRankSum=-0.042;QD=4.53;ReadPosRankSum=0.789;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:34,25:59:99:297,0,385 chrXIV 750974 . C T 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;MQRankSum=0.400;QD=13.02;ReadPosRankSum=0.545;SB=-3.000e+01 GT:AD:DP:GQ:PL 1/1:7,56:63:37:853,37,0 chrXIV 751004 . T C 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.003;QD=13.82;ReadPosRankSum=1.672;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:1,56:57:81:821,81,0 chrXIV 751013 . A G 577 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.31;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:63:610,63,0 chrXIV 751019 . A T 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=48;Dels=0.00;FS=2.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.75;MQ0=0;MQRankSum=1.223;QD=2.54;ReadPosRankSum=1.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,15:48:99:152,0,275 chrXIV 751040 . G T 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;DP=39;Dels=0.00;FS=6.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=6;MQRankSum=2.022;QD=3.21;ReadPosRankSum=2.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,18:39:99:155,0,119 chrXIV 751052 . G A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;DP=34;Dels=0.00;FS=10.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=8;MQRankSum=0.283;QD=3.15;ReadPosRankSum=1.209;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:15,19:34:56:137,0,56 chrXIV 751070 . C G 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DP=33;Dels=0.00;FS=20.225;HaplotypeScore=3.9667;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=9;MQRankSum=0.417;QD=1.85;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,14:33:91:91,0,245 chrXIV 751250 . A G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;DP=38;Dels=0.00;FS=19.684;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=32.19;MQ0=0;MQRankSum=-2.787;QD=0.58;ReadPosRankSum=-1.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,7:38:52:52,0,762 chrXIV 751256 . T C 102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;DP=40;Dels=0.00;FS=30.439;HaplotypeScore=5.5512;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=1;MQRankSum=-2.476;QD=2.55;ReadPosRankSum=0.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,11:40:99:132,0,579 chrXIV 751258 . G A 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DP=37;Dels=0.00;FS=31.409;HaplotypeScore=12.1134;MLEAC=1;MLEAF=0.500;MQ=31.01;MQ0=1;MQRankSum=-3.293;QD=3.43;ReadPosRankSum=0.263;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,14:37:99:157,0,471 chrXIV 751264 . C T 285.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;DP=35;Dels=0.00;FS=49.457;HaplotypeScore=12.4532;MLEAC=1;MLEAF=0.500;MQ=29.94;MQ0=4;MQRankSum=3.530;QD=8.14;ReadPosRankSum=-3.135;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:17,16:35:99:315,0,165 chrXIV 751286 . G A 585 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=5;QD=18.28;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:618,60,0 chrXIV 751313 . C G 978 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=10;QD=17.78;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1011,102,0 chrXIV 751343 . G A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=14;MQRankSum=0.405;QD=0.73;ReadPosRankSum=-3.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,10:71:82:82,0,894 chrXIV 751360 . T C 809.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=72;Dels=0.00;FS=8.999;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=11;MQRankSum=1.843;QD=11.24;ReadPosRankSum=2.527;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:21,51:72:99:839,0,280 chrXIV 751364 . A G 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=71;Dels=0.00;FS=8.826;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=12;MQRankSum=-0.592;QD=3.37;ReadPosRankSum=-0.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,22:71:99:269,0,813 chrXIV 751373 . G A 1185 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=14;QD=14.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1218,120,0 chrXIV 751385 . A C 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;DP=75;Dels=0.00;FS=45.278;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=17;MQRankSum=-1.446;QD=5.39;ReadPosRankSum=2.525;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:34,41:75:99:434,0,477 chrXIV 751529 . A G 1211 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=107;Dels=0.00;FS=73.529;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=28;MQRankSum=-1.339;QD=11.32;ReadPosRankSum=0.493;SB=-6.530e-03 GT:AD:DP:GQ:PL 1/1:16,91:107:59:1244,59,0 chrXIV 751540 . C T 1136 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=113;Dels=0.00;FS=62.854;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=29;MQRankSum=-1.040;QD=10.05;ReadPosRankSum=0.956;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:15,98:113:60:1169,60,0 chrXIV 751553 . C T 1079 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.012;DP=115;Dels=0.00;FS=27.642;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=31;MQRankSum=-1.834;QD=9.38;ReadPosRankSum=0.807;SB=-1.601e+01 GT:AD:DP:GQ:PL 1/1:12,103:115:97:1112,97,0 chrXIV 751721 . G A 2706 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=17;QD=17.69;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2739,309,0 chrXIV 751794 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=1.604;QD=21.63;ReadPosRankSum=1.714;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,189:194:99:4196,444,0 chrXIV 751807 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=22.02;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4316,439,0 chrXIV 751913 . T G 1857 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=20;QD=12.90;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:1890,201,0 chrXIV 751925 . C G 1904 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=18;QD=13.41;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,137:142:99:1937,207,0 chrXIV 752030 . A G 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DP=215;Dels=0.00;FS=9.127;HaplotypeScore=21.2895;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=2;MQRankSum=1.484;QD=22.63;ReadPosRankSum=3.146;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:4,209:215:99:4866,448,0 chrXIV 752069 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=193;Dels=0.00;FS=9.134;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=2;MQRankSum=1.303;QD=22.95;ReadPosRankSum=3.387;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4429,465,0 chrXIV 752169 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.36;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3532,346,0 chrXIV 752223 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.32;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3770,367,0 chrXIV 752316 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.46;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3215,316,0 chrXIV 752635 . G A 92.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=241;Dels=0.00;FS=9.668;HaplotypeScore=17.5462;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=-10.949;QD=0.38;ReadPosRankSum=-2.650;SB=-2.120e+02 GT:AD:DP:GQ:PL 0/1:188,51:241:99:122,0,4166 chrXIV 752652 . G A 249.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;DP=243;Dels=0.00;FS=6.453;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=53.17;MQ0=0;MQRankSum=-10.886;QD=1.02;ReadPosRankSum=1.625;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:181,60:243:99:279,0,4070 chrXIV 752693 . A G 1728.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040;DP=252;Dels=0.00;FS=10.475;HaplotypeScore=17.0774;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=0;MQRankSum=-12.859;QD=6.86;ReadPosRankSum=-1.450;SB=-1.046e+03 GT:AD:DP:GQ:PL 0/1:146,103:252:99:1758,0,3285 chrXIV 752720 . A G 1392.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.717;DP=224;Dels=0.00;FS=7.664;HaplotypeScore=15.4453;MLEAC=1;MLEAF=0.500;MQ=50.39;MQ0=0;MQRankSum=-11.993;QD=6.21;ReadPosRankSum=4.473;SB=-6.100e+02 GT:AD:DP:GQ:PL 0/1:134,89:224:99:1422,0,2917 chrXIV 752737 . T C 1292.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=199;Dels=0.00;FS=12.736;HaplotypeScore=14.3263;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=-11.057;QD=6.49;ReadPosRankSum=3.737;SB=-4.940e+02 GT:AD:DP:GQ:PL 0/1:119,75:199:99:1322,0,2532 chrXIV 752879 . G A 548.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.349;DP=176;Dels=0.00;FS=85.108;HaplotypeScore=11.3169;MLEAC=1;MLEAF=0.500;MQ=53.73;MQ0=0;MQRankSum=-9.618;QD=3.11;ReadPosRankSum=-0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,52:176:99:578,0,2580 chrXIV 752911 . C T 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;DP=176;Dels=0.00;FS=134.632;HaplotypeScore=10.2214;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-9.381;QD=2.28;ReadPosRankSum=0.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,44:176:99:432,0,2974 chrXIV 752933 . A G 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;DP=182;Dels=0.00;FS=81.250;HaplotypeScore=7.3028;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-9.278;QD=1.68;ReadPosRankSum=0.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,43:182:99:335,0,2952 chrXIV 752936 . A T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.72;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3866,394,0 chrXIV 752968 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.93;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4166,421,0 chrXIV 753001 . A G 516.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DP=201;Dels=0.00;FS=4.363;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=50.97;MQ0=0;MQRankSum=-10.279;QD=2.57;ReadPosRankSum=0.561;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:128,72:201:99:546,0,3072 chrXIV 753012 . T C 447.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;DP=197;Dels=0.00;FS=12.055;HaplotypeScore=11.7208;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=-10.030;QD=2.27;ReadPosRankSum=1.795;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:131,65:197:99:477,0,3060 chrXIV 753032 . G A 172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DP=192;Dels=0.00;FS=29.794;HaplotypeScore=11.4479;MLEAC=1;MLEAF=0.500;MQ=53.73;MQ0=0;MQRankSum=-9.647;QD=0.90;ReadPosRankSum=1.527;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,47:192:99:202,0,3161 chrXIV 753034 . T C 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DP=191;Dels=0.00;FS=27.408;HaplotypeScore=12.1818;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=0;MQRankSum=-9.818;QD=0.67;ReadPosRankSum=1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,46:191:99:158,0,3372 chrXIV 753040 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;DP=190;Dels=0.00;FS=31.348;HaplotypeScore=10.5063;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-9.342;QD=0.29;ReadPosRankSum=-0.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,41:190:86:86,0,3407 chrXIV 754078 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.72;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3265,325,0 chrXIV 754144 . G C 2393 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.36;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2426,249,0 chrXIV 754226 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.26;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3650,364,0 chrXIV 754294 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.82;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3010,307,0 chrXIV 754315 . A T 3069 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=23.79;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3102,307,0 chrXIV 754394 . A C 4377.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=26.85;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4377,436,0 chrXIV 754526 . A C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-1.127;QD=22.86;ReadPosRankSum=1.711;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3795,382,0 chrXIV 754560 . G A 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.098;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;MQRankSum=-1.415;QD=19.37;ReadPosRankSum=1.394;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3209,293,0 chrXIV 754562 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=19.68;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3221,322,0 chrXIV 754579 . T A 2760 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=1.012;QD=17.92;ReadPosRankSum=1.687;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2793,274,0 chrXIV 754581 . T A 2757 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=6.336;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;MQRankSum=1.023;QD=17.79;ReadPosRankSum=2.418;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2790,271,0 chrXIV 754585 . C T 2544 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.41;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2577,264,0 chrXIV 754592 . G T 1812 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=13.94;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1845,216,0 chrXIV 754593 . T G 1848 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=9.231;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=-2.917;QD=13.89;ReadPosRankSum=2.947;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:1881,222,0 chrXIV 754614 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=15.35;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1983,204,0 chrXIV 754622 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=15.41;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2052,201,0 chrXIV 754631 . A T 1789 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=13.66;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1822,183,0 chrXIV 755171 . G A 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.828;DP=76;Dels=0.00;FS=2.886;HaplotypeScore=9.1090;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=2;MQRankSum=1.977;QD=21.92;ReadPosRankSum=-1.571;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:3,72:76:99:1699,174,0 chrXIV 755218 . T C 1563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.7972;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=4;MQRankSum=0.403;QD=19.78;ReadPosRankSum=1.637;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1596,165,0 chrXIV 755323 . A C 1842 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=25.58;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1875,192,0 chrXIV 755402 . T C 1076 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=4;QD=12.51;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1109,117,0 chrXIV 755412 . G C 985 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=62.5702;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=4;QD=11.59;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1018,105,0 chrXIV 755437 . C T 1132 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=4;QD=12.04;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1165,114,0 chrXIV 755451 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;MQRankSum=1.494;QD=13.59;ReadPosRankSum=1.359;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1419,144,0 chrXIV 755457 . A T 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.420;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;MQRankSum=1.598;QD=15.02;ReadPosRankSum=1.059;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1580,156,0 chrXIV 755545 . T C 1124 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=14.79;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1157,120,0 chrXIV 755548 . T C 1112 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=14.83;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1145,123,0 chrXIV 755549 . A G 1088 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=-1.595;QD=14.32;ReadPosRankSum=1.641;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1121,120,0 chrXIV 755567 . C A 1003 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=12.54;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1036,108,0 chrXIV 755572 . T G 867 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=10.84;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:96:900,96,0 chrXIV 755824 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.352;QD=25.07;ReadPosRankSum=2.278;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3635,370,0 chrXIV 760344 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.86;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3181,310,0 chrXIV 761395 . A C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.3725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3496,355,0 chrXIV 764169 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.89;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2613,258,0 chrXIV 768611 . T G 4358.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.1558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4358,457,0 chrXIV 768862 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3111,321,0 chrXIV 769532 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2712,262,0 chrXIV 772254 . G C 2456 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2489,241,0 chrXIV 772854 . C T 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DP=239;Dels=0.00;FS=57.136;HaplotypeScore=12.5095;MLEAC=1;MLEAF=0.500;MQ=53.55;MQ0=20;MQRankSum=-7.910;QD=0.20;ReadPosRankSum=-4.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,47:239:78:78,0,4295 chrXIV 772971 . C T 2315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.736;DP=352;Dels=0.00;FS=117.847;HaplotypeScore=26.6770;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=15;MQRankSum=-1.302;QD=6.58;ReadPosRankSum=0.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,141:352:99:2345,0,4168 chrXIV 773196 . G A 2307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.592;DP=468;Dels=0.00;FS=20.526;HaplotypeScore=30.0115;MLEAC=1;MLEAF=0.500;MQ=49.75;MQ0=19;MQRankSum=-9.705;QD=4.93;ReadPosRankSum=-0.800;SB=-6.210e+02 GT:AD:DP:GQ:PL 0/1:239,224:468:99:2337,0,4687 chrXIV 773226 . T C 2696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.794;DP=397;Dels=0.00;FS=24.977;HaplotypeScore=26.2813;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=12;MQRankSum=-13.140;QD=6.79;ReadPosRankSum=1.176;SB=-1.056e+03 GT:AD:DP:GQ:PL 0/1:196,199:397:99:2726,0,3735 chrXIV 773244 . A T 2829.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.416;DP=380;Dels=0.00;FS=10.367;HaplotypeScore=18.1289;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=4;MQRankSum=-11.538;QD=7.44;ReadPosRankSum=1.330;SB=-1.043e+03 GT:AD:DP:GQ:PL 0/1:187,193:380:99:2859,0,3548 chrXIV 773265 . T G 2581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=383;Dels=0.00;FS=8.783;HaplotypeScore=17.4107;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=4;MQRankSum=-12.203;QD=6.74;ReadPosRankSum=1.784;SB=-8.210e+02 GT:AD:DP:GQ:PL 0/1:192,188:383:99:2611,0,3544 chrXIV 773371 . A G 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.837;DP=313;Dels=0.00;FS=79.023;HaplotypeScore=15.9872;MLEAC=1;MLEAF=0.500;MQ=47.99;MQ0=43;MQRankSum=-12.639;QD=0.77;ReadPosRankSum=-1.841;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,118:313:99:271,0,4417 chrXIV 773382 . C T 513.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;DP=307;Dels=0.00;FS=25.631;HaplotypeScore=16.5426;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=40;MQRankSum=-10.801;QD=1.67;ReadPosRankSum=-1.173;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:188,119:307:99:543,0,4147 chrXIV 773862 . G A 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.676;DP=306;Dels=0.00;FS=61.234;HaplotypeScore=18.3752;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=9;MQRankSum=-9.984;QD=0.41;ReadPosRankSum=2.629;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,54:306:99:154,0,5063 chrXIV 774280 . C T 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=105;Dels=0.00;FS=3.523;HaplotypeScore=7.2426;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=13;MQRankSum=-5.197;QD=1.17;ReadPosRankSum=-1.664;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:80,23:105:99:153,0,1623 chrXIV 774367 . G T 1203 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=23;QD=15.83;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1236,123,0 chrXIV 774368 . C T 1209 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=23;QD=15.91;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1242,123,0 chrXIV 774399 . T G 782 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=21;MQRankSum=1.386;QD=11.01;ReadPosRankSum=1.663;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:84:815,84,0 chrXIV 774421 . C T 210.03 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=28;QD=3.18;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:24:243,24,0 chrXIV 774977 . G C 4495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=457;Dels=0.00;FS=4.048;HaplotypeScore=20.7810;MLEAC=1;MLEAF=0.500;MQ=46.54;MQ0=7;MQRankSum=-0.481;QD=9.84;ReadPosRankSum=-1.487;SB=-2.727e+03 GT:AD:DP:GQ:PL 0/1:205,249:457:99:4495,0,3877 chrXIV 775176 . A T 2395 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.428;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=27.4462;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=82;MQRankSum=-3.787;QD=11.40;ReadPosRankSum=3.775;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,205:210:99:2428,252,0 chrXIV 775314 . C T 904.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.6600;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=70;MQRankSum=0.188;QD=4.13;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,97:219:99:934,0,808 chrXIV 775332 . G A 465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=20.15;MQ0=54;MQRankSum=-0.531;QD=3.18;ReadPosRankSum=-3.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,65:146:99:495,0,456 chrXIV 776259 . G A 1441.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.399;DP=246;Dels=0.00;FS=81.826;HaplotypeScore=15.2807;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=3;MQRankSum=-12.581;QD=5.86;ReadPosRankSum=3.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,97:246:99:1471,0,2991 chrXIV 776710 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.45;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4254,421,0 chrXIV 776741 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.53;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3982,391,0 chrXIV 778368 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=143;Dels=0.00;FS=6.002;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.393;QD=22.48;ReadPosRankSum=2.950;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3247,325,0 chrXIV 779457 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=7.231;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.264;QD=26.16;ReadPosRankSum=1.685;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1995,198,0 chrXIV 779498 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=28.20;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2543,250,0 chrXIV 781360 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.3961;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=0;QD=11.99;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1028,99,0 chrXIV 781401 . C T 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.817;DP=36;Dels=0.00;FS=7.789;HaplotypeScore=15.2603;MLEAC=2;MLEAF=1.00;MQ=15.38;MQ0=0;MQRankSum=0.036;QD=1.00;ReadPosRankSum=-2.239;SB=2.20 GT:AD:DP:GQ:PL 1/1:2,33:36:9:68,9,0 chrXIV 781445 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.429;DP=44;Dels=0.00;FS=17.877;HaplotypeScore=3.5168;MLEAC=2;MLEAF=1.00;MQ=17.32;MQ0=4;MQRankSum=0.648;QD=0.41;ReadPosRankSum=-2.105;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:35,9:44:6:49,6,0 chrXIV 781458 . G A 107.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=49;Dels=0.00;FS=8.661;HaplotypeScore=6.7924;MLEAC=2;MLEAF=1.00;MQ=16.96;MQ0=4;MQRankSum=3.341;QD=2.19;ReadPosRankSum=-0.594;SB=-1.483e+02 GT:AD:DP:GQ:PL 1/1:15,34:49:15:140,15,0 chrXIV 781471 . A T 183.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=65;Dels=0.00;FS=68.569;HaplotypeScore=12.4835;MLEAC=2;MLEAF=1.00;MQ=16.50;MQ0=4;MQRankSum=0.829;QD=2.82;ReadPosRankSum=-0.609;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:40,25:65:24:216,24,0 chrXIV 781473 . G A 180.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=65;Dels=0.00;FS=75.818;HaplotypeScore=5.8654;MLEAC=2;MLEAF=1.00;MQ=16.45;MQ0=4;MQRankSum=0.503;QD=2.77;ReadPosRankSum=-0.591;SB=-8.802e+01 GT:AD:DP:GQ:PL 1/1:39,26:65:24:213,24,0 chrXIV 781532 . G A 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=102;Dels=0.00;FS=108.615;HaplotypeScore=61.2363;MLEAC=1;MLEAF=0.500;MQ=15.38;MQ0=4;MQRankSum=-0.588;QD=1.97;ReadPosRankSum=0.628;SB=-6.400e+01 GT:AD:DP:GQ:PL 0/1:75,27:102:43:231,0,43 chrXIV 781540 . G A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;DP=98;Dels=0.00;FS=76.696;HaplotypeScore=78.9270;MLEAC=1;MLEAF=0.500;MQ=16.15;MQ0=0;MQRankSum=0.000;QD=0.32;ReadPosRankSum=2.314;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,71:98:61:61,0,155 chrXIV 781551 . G A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DP=95;Dels=0.00;FS=33.912;HaplotypeScore=49.8783;MLEAC=1;MLEAF=0.500;MQ=16.37;MQ0=0;MQRankSum=0.622;QD=0.11;ReadPosRankSum=4.132;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:16,79:95:40:40,0,114 chrXIV 781557 . G A 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.879;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=36.0177;MLEAC=2;MLEAF=1.00;MQ=15.89;MQ0=1;MQRankSum=-1.491;QD=1.66;ReadPosRankSum=0.065;SB=0.095 GT:AD:DP:GQ:PL 1/1:3,93:96:21:192,21,0 chrXIV 781560 . C G 48.14 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=156.3188;MLEAC=1;MLEAF=0.500;MQ=15.96;MQ0=1;MQRankSum=1.058;QD=0.51;ReadPosRankSum=4.116;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:14,80:94:12:78,0,12 chrXIV 781585 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DP=96;Dels=0.00;FS=29.985;HaplotypeScore=43.6165;MLEAC=1;MLEAF=0.500;MQ=17.63;MQ0=2;MQRankSum=2.632;QD=0.31;ReadPosRankSum=-2.032;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,4:96:60:60,0,250 chrXIV 781594 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;DP=139;Dels=0.00;FS=6.382;HaplotypeScore=62.1591;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=8;MQRankSum=-0.323;QD=0.09;ReadPosRankSum=-2.844;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,21:139:42:42,0,413 chrXIV 781606 . T C 348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;DP=155;Dels=0.00;FS=64.584;HaplotypeScore=52.7137;MLEAC=1;MLEAF=0.500;MQ=16.21;MQ0=15;MQRankSum=1.257;QD=2.25;ReadPosRankSum=-2.033;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,75:155:99:378,0,371 chrXIV 781670 . C G 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=142;Dels=0.00;FS=0.685;HaplotypeScore=9.3000;MLEAC=1;MLEAF=0.500;MQ=13.77;MQ0=25;MQRankSum=-0.046;QD=1.49;ReadPosRankSum=-3.978;SB=-2.382e+01 GT:AD:DP:GQ:PL 0/1:74,68:142:99:242,0,333 chrXIV 781691 . A G 117.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=10.76;MQ0=19;MQRankSum=0.950;QD=1.06;ReadPosRankSum=2.236;SB=-6.063e+01 GT:AD:DP:GQ:PL 1/1:2,109:111:18:150,18,0 chrXIV 781700 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;DP=123;Dels=0.00;FS=26.064;HaplotypeScore=15.8736;MLEAC=1;MLEAF=0.500;MQ=13.67;MQ0=14;MQRankSum=-1.953;QD=0.35;ReadPosRankSum=-0.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,30:123:73:73,0,251 chrXIV 781706 . T C 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=134;Dels=0.00;FS=2.264;HaplotypeScore=15.9283;MLEAC=1;MLEAF=0.500;MQ=14.21;MQ0=15;MQRankSum=-0.797;QD=0.34;ReadPosRankSum=2.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,25:134:75:75,0,288 chrXIV 781758 . T A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;DP=132;Dels=0.00;FS=6.430;HaplotypeScore=6.1453;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=13;MQRankSum=-0.292;QD=0.23;ReadPosRankSum=-0.876;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:113,19:132:60:60,0,460 chrXIV 781770 . A G 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=137;Dels=0.00;FS=27.362;HaplotypeScore=25.5115;MLEAC=1;MLEAF=0.500;MQ=16.03;MQ0=17;MQRankSum=-1.499;QD=2.01;ReadPosRankSum=0.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,81:137:99:305,0,420 chrXIV 781771 . T C 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;DP=140;Dels=0.00;FS=25.563;HaplotypeScore=24.1119;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=17;MQRankSum=2.498;QD=2.11;ReadPosRankSum=-1.197;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:102,37:140:99:325,0,410 chrXIV 781798 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;DP=82;Dels=0.00;FS=6.807;HaplotypeScore=25.9091;MLEAC=1;MLEAF=0.500;MQ=15.21;MQ0=14;MQRankSum=-1.844;QD=0.23;ReadPosRankSum=-1.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,31:82:49:49,0,447 chrXIV 781799 . A G 626 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=23.5978;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=14;MQRankSum=-2.184;QD=7.92;ReadPosRankSum=2.374;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:81:659,81,0 chrXIV 781802 . A T 558 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=21.2864;MLEAC=2;MLEAF=1.00;MQ=14.57;MQ0=14;QD=6.64;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:84:72:591,72,0 chrXIV 781858 . G A 44.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=7.55;MQ0=65;MQRankSum=-1.971;QD=0.45;ReadPosRankSum=-0.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,50:98:14:74,0,14 chrXIV 781941 . T C 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.293;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.21;MQ0=107;MQRankSum=-0.255;QD=0.41;ReadPosRankSum=0.085;SB=2.24 GT:AD:DP:GQ:PL 1/1:55,67:122:9:82,9,0 chrXIV 781950 . T C 73.51 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.37;MQ0=109;QD=0.59;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:106,19:125:12:106,12,0 chrXIV 781953 . C T 73.51 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.30;MQ0=114;QD=0.56;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:106,25:131:12:106,12,0 chrXIV 782193 . A C 52.97 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.93;MQ0=148;QD=0.30;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:6,171:177:9:85,9,0 chrXIV 782202 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.39;MQ0=148;QD=0.14;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:93,76:172:6:56,6,0 chrXIV 782375 . T A 267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=63;Dels=0.02;FS=1.354;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=1;MQRankSum=-5.498;QD=4.24;ReadPosRankSum=0.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,44:62:99:297,0,358 chrXIV 782501 . A T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrXIV 782522 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.04;MQ0=9;QD=2.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:9:74,9,0 chrXIV 782534 . C T 68.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=18;QD=2.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:12:101,12,0 chrXIV 783181 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=1;QD=2.18;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrXIV 783205 . C T 48.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=4;MQRankSum=2.192;QD=2.67;ReadPosRankSum=-0.919;SB=-4.894e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:17:78,0,17 chrXIV 783361 . A C 193.01 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.7012;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=8;QD=6.23;SB=-4.899e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:27:226,27,0 chrXIV 783426 . G A 736 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=81;Dels=0.00;FS=2.694;HaplotypeScore=12.5084;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=22;MQRankSum=3.715;QD=9.09;ReadPosRankSum=1.969;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:36,45:81:67:769,67,0 chrXIV 783436 . A G 786 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.410;DP=70;Dels=0.00;FS=7.623;HaplotypeScore=5.1369;MLEAC=2;MLEAF=1.00;MQ=17.36;MQ0=20;MQRankSum=4.009;QD=11.23;ReadPosRankSum=-2.236;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:27,43:70:96:819,96,0 chrXIV 783441 . T C 758 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718;DP=68;Dels=0.00;FS=7.649;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=17.61;MQ0=18;MQRankSum=3.990;QD=11.15;ReadPosRankSum=-2.286;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:26,41:68:93:791,93,0 chrXIV 783448 . C T 630 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.075;DP=62;Dels=0.00;FS=10.458;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=16.76;MQ0=19;MQRankSum=3.886;QD=10.16;ReadPosRankSum=-2.231;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:26,35:62:75:663,75,0 chrXIV 783485 . G A 77.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=11.44;MQ0=12;QD=1.02;SB=-2.426e+01 GT:AD:DP:GQ:PL 1/1:10,66:76:15:110,15,0 chrXIV 783490 . A C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=85;Dels=0.00;FS=18.808;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=12.89;MQ0=9;MQRankSum=-1.504;QD=0.48;ReadPosRankSum=1.687;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:7,78:85:9:73,9,0 chrXIV 783491 . G T 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.924;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.68;MQ0=9;MQRankSum=-1.759;QD=0.42;ReadPosRankSum=-2.088;SB=2.82 GT:AD:DP:GQ:PL 1/1:9,75:84:9:67,9,0 chrXIV 783507 . T A 128.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2382;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=2;MQRankSum=-3.064;QD=1.39;ReadPosRankSum=3.358;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,88:92:18:161,18,0 chrXIV 783551 . G A 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=147;Dels=0.00;FS=135.440;HaplotypeScore=22.0788;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=5;MQRankSum=1.534;QD=1.12;ReadPosRankSum=1.258;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:122,25:147:99:194,0,988 chrXIV 783569 . T G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DP=136;Dels=0.01;FS=228.844;HaplotypeScore=13.4314;MLEAC=1;MLEAF=0.500;MQ=22.79;MQ0=7;MQRankSum=-1.058;QD=1.22;ReadPosRankSum=2.332;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,25:135:99:196,0,1402 chrXIV 783570 . T A 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DP=135;Dels=0.00;FS=228.844;HaplotypeScore=13.4314;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=7;MQRankSum=-1.202;QD=1.24;ReadPosRankSum=2.362;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,25:135:99:198,0,1403 chrXIV 783584 . T C 1692.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.155;DP=124;Dels=0.00;FS=178.097;HaplotypeScore=15.1566;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=5;MQRankSum=4.348;QD=13.65;ReadPosRankSum=0.452;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,89:124:99:1722,0,167 chrXIV 783740 . C T 2245.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=221;Dels=0.00;FS=36.402;HaplotypeScore=20.2165;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=1;MQRankSum=2.402;QD=10.16;ReadPosRankSum=-0.700;SB=-6.460e+02 GT:AD:DP:GQ:PL 0/1:56,165:221:99:2275,0,530 chrXIV 783763 . T A 1249.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;DP=188;Dels=0.00;FS=156.684;HaplotypeScore=97.0873;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=1;MQRankSum=-1.516;QD=6.64;ReadPosRankSum=-4.618;SB=-4.010e+02 GT:AD:DP:GQ:PL 0/1:80,101:188:99:1279,0,1456 chrXIV 783779 . T C 965.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DP=158;Dels=0.00;FS=325.954;HaplotypeScore=7.6591;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=2;MQRankSum=-2.061;QD=6.11;ReadPosRankSum=-4.337;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:71,86:158:99:995,0,1383 chrXIV 783789 . C G 1123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.982;DP=156;Dels=0.00;FS=405.303;HaplotypeScore=14.9560;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=4;MQRankSum=1.506;QD=7.20;ReadPosRankSum=1.514;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:72,83:156:99:1153,0,1369 chrXIV 783791 . G C 1105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=160;Dels=0.00;FS=405.303;HaplotypeScore=17.1144;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=4;MQRankSum=2.413;QD=6.91;ReadPosRankSum=2.639;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:73,83:160:99:1135,0,1461 chrXIV 783796 . G T 1292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;DP=181;Dels=0.01;FS=389.075;HaplotypeScore=32.7273;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=4;MQRankSum=2.273;QD=7.14;ReadPosRankSum=1.975;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:68,109:180:99:1322,0,1443 chrXIV 783805 . G A 1739.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.415;DP=216;Dels=0.00;FS=584.201;HaplotypeScore=32.0980;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=5;MQRankSum=2.617;QD=8.05;ReadPosRankSum=4.601;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:90,126:216:99:1769,0,1487 chrXIV 783824 . G A 2695.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.249;DP=229;Dels=0.00;FS=458.673;HaplotypeScore=119.8544;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=5;MQRankSum=2.075;QD=11.77;ReadPosRankSum=2.488;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:56,173:229:99:2725,0,334 chrXIV 783832 . G A 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.049;DP=230;Dels=0.00;FS=205.532;HaplotypeScore=121.1315;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=3;MQRankSum=2.282;QD=13.07;ReadPosRankSum=-1.004;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:30,196:230:38:3039,38,0 chrXIV 783871 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.710;DP=257;Dels=0.00;FS=117.358;HaplotypeScore=30.3600;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=2;MQRankSum=3.465;QD=17.00;ReadPosRankSum=4.596;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:20,234:257:99:4369,237,0 chrXIV 783914 . T G 181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;DP=212;Dels=0.01;FS=10.039;HaplotypeScore=133.0903;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=1;MQRankSum=-6.887;QD=0.85;ReadPosRankSum=2.287;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:153,55:209:99:211,0,2375 chrXIV 783918 . G T 262.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;DP=205;Dels=0.01;FS=6.964;HaplotypeScore=137.2239;MLEAC=1;MLEAF=0.500;MQ=36.43;MQ0=1;MQRankSum=-7.344;QD=1.28;ReadPosRankSum=3.025;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:135,60:202:99:292,0,2327 chrXIV 783923 . G A 239.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=118.2265;MLEAC=1;MLEAF=0.500;MQ=34.88;MQ0=1;MQRankSum=-6.017;QD=1.21;ReadPosRankSum=3.179;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:140,58:198:99:269,0,2079 chrXIV 783929 . A G 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DP=180;Dels=0.02;FS=20.701;HaplotypeScore=132.0590;MLEAC=1;MLEAF=0.500;MQ=33.38;MQ0=1;MQRankSum=-6.558;QD=2.07;ReadPosRankSum=3.161;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:105,72:177:99:403,0,1615 chrXIV 783946 . G A 801.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;DP=191;Dels=0.00;FS=38.855;HaplotypeScore=55.9926;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=9;MQRankSum=2.799;QD=4.19;ReadPosRankSum=-0.660;SB=-6.800e+02 GT:AD:DP:GQ:PL 0/1:77,97:191:99:831,0,827 chrXIV 783968 . C A,G 1413.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.439;DP=185;Dels=0.00;FS=5.036;HaplotypeScore=135.6542;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.73;MQ0=10;MQRankSum=0.871;QD=7.64;ReadPosRankSum=0.882;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/2:24,119,41:185:90:1473,115,90,1242,0,1343 chrXIV 783972 . A G,T 1213.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.319;DP=187;Dels=0.00;FS=6.837;HaplotypeScore=118.3548;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.63;MQ0=11;MQRankSum=1.568;QD=6.49;ReadPosRankSum=4.482;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/2:38,78,57:187:99:1273,154,184,978,0,1102 chrXIV 783973 . A T 1102.80 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;DP=184;Dels=0.00;FS=160.630;HaplotypeScore=167.2164;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=11;MQRankSum=2.162;QD=5.99;ReadPosRankSum=4.199;SB=-1.958e+02 GT:AD:DP:GQ:PL 0/1:53,69:184:99:1132,0,150 chrXIV 783984 . T G 1058.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=200;Dels=0.00;FS=86.036;HaplotypeScore=455.7554;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=12;MQRankSum=1.695;QD=5.29;ReadPosRankSum=5.405;SB=-1.128e+03 GT:AD:DP:GQ:PL 0/1:57,113:200:99:1088,0,194 chrXIV 784024 . G A 525.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;DP=254;Dels=0.04;FS=71.574;HaplotypeScore=628.9749;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=12;MQRankSum=-0.266;QD=2.07;ReadPosRankSum=7.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,57:245:99:555,0,1394 chrXIV 784030 . T A 234.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=238;Dels=0.02;FS=241.208;HaplotypeScore=756.8656;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=11;MQRankSum=4.550;QD=0.98;ReadPosRankSum=-1.277;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,35:234:99:264,0,1149 chrXV 170 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.7502;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=0;QD=2.20;SB=-2.845e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:12:105,12,0 chrXV 177 . C T 103.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=36;Dels=0.00;FS=12.483;HaplotypeScore=4.7502;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=0;MQRankSum=-0.584;QD=2.87;ReadPosRankSum=1.285;SB=-1.533e+02 GT:AD:DP:GQ:PL 1/1:2,30:36:15:136,15,0 chrXV 193 . C T 190.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=42;Dels=0.00;FS=9.138;HaplotypeScore=4.6011;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=0;MQRankSum=0.211;QD=4.52;ReadPosRankSum=0.211;SB=-6.604e+01 GT:AD:DP:GQ:PL 1/1:1,40:42:24:223,24,0 chrXV 195 . C T 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;DP=41;Dels=0.00;FS=58.747;HaplotypeScore=3.8671;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=0;MQRankSum=0.020;QD=4.59;ReadPosRankSum=3.088;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:5,36:41:24:221,24,0 chrXV 200 . T C 190.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.964;DP=45;Dels=0.00;FS=22.175;HaplotypeScore=3.8671;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=0;MQRankSum=-2.286;QD=4.22;ReadPosRankSum=2.341;SB=-1.304e+01 GT:AD:DP:GQ:PL 1/1:2,43:45:24:223,24,0 chrXV 204 . C T 189.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=16.335;HaplotypeScore=37.6306;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;MQRankSum=-0.282;QD=4.40;ReadPosRankSum=1.410;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:1,42:43:24:222,24,0 chrXV 222 . G C 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=0;QD=4.45;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:24:220,24,0 chrXV 228 . C T 192.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.803;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.972;QD=4.68;ReadPosRankSum=1.648;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:1,40:41:24:225,24,0 chrXV 229 . A C 189.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.887;QD=4.61;ReadPosRankSum=1.648;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:1,40:41:24:222,24,0 chrXV 239 . C A 176.03 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=26.8363;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;QD=4.40;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:24:209,24,0 chrXV 321 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.19;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:56,6,0 chrXV 333 . T C 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:61,6,0 chrXV 337 . C G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXV 339 . G C 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXV 340 . G C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrXV 348 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=2;QD=1.79;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,23:24:9:75,9,0 chrXV 407 . T C 187.03 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=18.01;MQ0=5;QD=2.71;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:24:220,24,0 chrXV 421 . C T 169.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.080;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5249;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=4;MQRankSum=-1.466;QD=2.45;ReadPosRankSum=1.679;SB=-2.203e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:24:202,24,0 chrXV 783 . C T 208 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=5;QD=13.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:30:241,30,0 chrXV 789 . T C 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.12;MQ0=5;MQRankSum=1.246;QD=1.44;ReadPosRankSum=1.398;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,7:16:53:53,0,122 chrXV 819 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=6.6291;MLEAC=1;MLEAF=0.500;MQ=17.43;MQ0=6;MQRankSum=-1.247;QD=1.09;ReadPosRankSum=-0.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,9:22:54:54,0,143 chrXV 827 . A C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=9.5492;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=3;MQRankSum=1.356;QD=2.74;ReadPosRankSum=-1.139;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,6:19:82:82,0,176 chrXV 851 . A G 320 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=2;QD=18.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:45:353,45,0 chrXV 858 . A T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.488;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=1;MQRankSum=-2.720;QD=4.81;ReadPosRankSum=-1.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,8:16:99:107,0,162 chrXV 881 . G T 81.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=1;QD=13.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:15:114,15,0 chrXV 884 . T A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=1;QD=6.33;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:70,9,0 chrXV 886 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=1;QD=6.50;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:71,9,0 chrXV 928 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=0;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrXV 944 . T C 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.067;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=0;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.067;SB=2.60 GT:AD:DP:GQ:PL 1/1:2,6:8:12:87,12,0 chrXV 945 . G A 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.572;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=0;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.067;SB=2.60 GT:AD:DP:GQ:PL 1/1:2,6:8:12:87,12,0 chrXV 976 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.00;MQ=20.37;MQ0=0;QD=6.27;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:108,15,0 chrXV 982 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=0;MQRankSum=1.239;QD=1.67;ReadPosRankSum=-1.932;SB=-9.942e-03 GT:AD:DP:GQ:PL 0/1:4,8:12:28:50,0,28 chrXV 989 . T C 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=4.6823;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=5.79;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:108,15,0 chrXV 993 . T C 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=0;MQRankSum=-1.154;QD=3.03;ReadPosRankSum=0.663;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:7,7:14:7:72,0,7 chrXV 994 . T C 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=0;MQRankSum=-2.339;QD=3.03;ReadPosRankSum=0.201;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:7,7:14:7:72,0,7 chrXV 1002 . A G 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=5.38;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:108,15,0 chrXV 1003 . A T 42.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=0;MQRankSum=-2.202;QD=3.03;ReadPosRankSum=-1.406;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:7,7:14:7:72,0,7 chrXV 1005 . T C 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=5.38;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:108,15,0 chrXV 1014 . A G 54.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=3.89;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:87,12,0 chrXV 1028 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=3.30;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:65,9,0 chrXV 11068 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.74;MQ0=1;QD=4.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:9:65,9,0 chrXV 11114 . T C 124.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=2;QD=12.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,9:10:21:157,21,0 chrXV 11127 . G A 146.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.14;MQ0=3;QD=13.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,9:11:24:179,24,0 chrXV 11147 . G A 97.13 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.56;MQ0=5;QD=8.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,7:11:18:130,18,0 chrXV 11158 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=4;QD=2.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,2:6:6:43,6,0 chrXV 11255 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=4;QD=2.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,3:6:6:43,6,0 chrXV 11277 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.85;MQ0=3;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:87,12,0 chrXV 11279 . A G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.85;MQ0=3;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:87,12,0 chrXV 11280 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.85;MQ0=3;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:87,12,0 chrXV 11283 . G A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.85;MQ0=3;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:87,12,0 chrXV 11284 . C T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.85;MQ0=3;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:87,12,0 chrXV 11298 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.72;MQ0=2;QD=9.41;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:2,6:8:15:108,15,0 chrXV 11309 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=1;QD=8.36;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:108,15,0 chrXV 11319 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=1;QD=8.36;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:108,15,0 chrXV 11321 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=1;QD=8.36;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:108,15,0 chrXV 11340 . G T 61.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=9.5492;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=2;MQRankSum=-0.742;QD=6.83;ReadPosRankSum=-0.742;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:3,6:9:12:94,12,0 chrXV 11343 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=2;QD=6.95;SB=-3.039e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:12:95,12,0 chrXV 11349 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=2;QD=6.83;SB=-2.939e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:12:94,12,0 chrXV 11350 . C G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=2;QD=6.83;SB=-2.939e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:12:94,12,0 chrXV 11352 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=5.7608;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=2;QD=6.83;SB=-2.926e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:12:94,12,0 chrXV 11545 . G C 53.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.55;MQ0=16;QD=2.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:9:86,9,0 chrXV 11548 . T C 80.51 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.45;MQ0=20;QD=3.35;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:4,20:24:12:113,12,0 chrXV 11928 . T G 201 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=0;QD=4.57;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:30:234,30,0 chrXV 11940 . A G 275 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=5.61;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:36:308,36,0 chrXV 11942 . G A 276 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=5.63;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:36:309,36,0 chrXV 11944 . G T 276 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=5.63;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:36:309,36,0 chrXV 11962 . G A 283 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=0;QD=7.07;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:316,36,0 chrXV 11969 . A G 273 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=0;QD=7.80;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:36:306,36,0 chrXV 11971 . A T 275 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=0;QD=7.86;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:36:308,36,0 chrXV 11983 . G A 253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=0;MQRankSum=2.869;QD=7.44;ReadPosRankSum=3.501;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:5,29:34:36:286,36,0 chrXV 12015 . A G 357 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=0;QD=6.37;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:390,45,0 chrXV 12017 . G T 396 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=0;QD=7.07;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:429,45,0 chrXV 12021 . T C 360 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;MQRankSum=-1.732;QD=6.67;ReadPosRankSum=1.668;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,53:54:42:393,42,0 chrXV 12022 . C T 380 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;QD=6.91;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:45:413,45,0 chrXV 12048 . T C 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;MQRankSum=-1.399;QD=9.80;ReadPosRankSum=1.699;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1052,114,0 chrXV 12077 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=11.52;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1554,177,0 chrXV 12086 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=13.39;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:1908,213,0 chrXV 12121 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=5.188;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=0.366;QD=19.25;ReadPosRankSum=1.683;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2805,309,0 chrXV 12200 . G T 2536 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=18.51;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2569,276,0 chrXV 12201 . T A 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-0.869;QD=18.56;ReadPosRankSum=2.415;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2632,285,0 chrXV 12243 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9785;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=19.99;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3212,339,0 chrXV 12324 . G C 3861.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.26;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3861,408,0 chrXV 12728 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.24;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2032,213,0 chrXV 12808 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.64;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1746,195,0 chrXV 12877 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.38;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2241,228,0 chrXV 12943 . A G 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-2.257;QD=16.45;ReadPosRankSum=2.364;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1925,207,0 chrXV 12944 . T A 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=113;Dels=0.00;FS=6.456;HaplotypeScore=74.6493;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.207;QD=17.08;ReadPosRankSum=2.319;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1963,201,0 chrXV 13041 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=25.12;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4522,466,0 chrXV 13154 . T A 3187 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.90;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3220,339,0 chrXV 13204 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.59;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3657,384,0 chrXV 13323 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8170;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.33;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1825,195,0 chrXV 13344 . G T 1973 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.42;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2006,207,0 chrXV 13362 . T C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.563;QD=22.01;ReadPosRankSum=1.690;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1860,195,0 chrXV 13478 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.12;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2257,231,0 chrXV 13893 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.51;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2074,213,0 chrXV 14011 . G A 30.77 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.05;FS=0.000;HaplotypeScore=27.0904;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=0.47;SB=-8.128e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:6:62,6,0 chrXV 14028 . A G 113.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=45;Dels=0.00;FS=5.400;HaplotypeScore=29.4791;MLEAC=1;MLEAF=0.500;MQ=44.96;MQ0=0;MQRankSum=0.637;QD=2.53;ReadPosRankSum=3.010;SB=-1.917e+02 GT:AD:DP:GQ:PL 0/1:5,38:45:5:143,0,5 chrXV 14057 . T A 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.263;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=1.144;QD=18.28;ReadPosRankSum=1.602;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1002,105,0 chrXV 14112 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=23.17;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1956,213,0 chrXV 14199 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=24.86;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2270,234,0 chrXV 14256 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.01;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1894,201,0 chrXV 14268 . A T 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.003;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=-0.726;QD=17.89;ReadPosRankSum=1.695;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1697,183,0 chrXV 14852 . A G 4598.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=25.98;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4598,478,0 chrXV 14884 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.08;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3780,382,0 chrXV 14928 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=167;Dels=0.00;FS=15.736;HaplotypeScore=11.4345;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.342;QD=21.13;ReadPosRankSum=3.301;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:3528,378,0 chrXV 15079 . G T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.73;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:3759,391,0 chrXV 15083 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.42;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3868,394,0 chrXV 15182 . A G 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.233;QD=23.87;ReadPosRankSum=1.698;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4798,508,0 chrXV 15215 . G T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5829;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.83;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4051,409,0 chrXV 15534 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.74;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2929,297,0 chrXV 15548 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.121;QD=23.36;ReadPosRankSum=1.703;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2813,297,0 chrXV 15682 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.30;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3308,354,0 chrXV 15711 . C G 3032 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.06;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3065,321,0 chrXV 15753 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0074;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.45;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2870,294,0 chrXV 15886 . A G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=124;Dels=0.00;FS=5.960;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.114;QD=22.92;ReadPosRankSum=2.943;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2875,309,0 chrXV 16012 . A T 2523 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.56;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2556,276,0 chrXV 16027 . A T 2610 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.75;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2643,267,0 chrXV 16130 . G T 2090 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.75;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2123,219,0 chrXV 16146 . G C 2179 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.46;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2212,231,0 chrXV 16170 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.609;QD=22.83;ReadPosRankSum=1.640;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2659,279,0 chrXV 16329 . T A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.82;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3383,349,0 chrXV 16330 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.70;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3256,342,0 chrXV 16421 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=3.136;HaplotypeScore=8.6613;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.237;QD=25.14;ReadPosRankSum=1.683;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3545,369,0 chrXV 16691 . C T 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.094;QD=25.94;ReadPosRankSum=1.163;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5213,553,0 chrXV 16841 . A T 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.188;QD=23.52;ReadPosRankSum=1.696;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4540,469,0 chrXV 16901 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.791;DP=192;Dels=0.00;FS=12.243;HaplotypeScore=7.2886;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-1.012;QD=20.70;ReadPosRankSum=3.808;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:5,186:192:99:3975,426,0 chrXV 16908 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=199;Dels=0.00;FS=9.930;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;MQRankSum=-1.262;QD=19.26;ReadPosRankSum=2.964;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:3,193:199:99:3833,405,0 chrXV 16948 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=-0.100;QD=18.24;ReadPosRankSum=1.714;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3483,366,0 chrXV 16960 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=4.748;HaplotypeScore=2.7685;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.700;QD=16.69;ReadPosRankSum=1.714;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3170,348,0 chrXV 16970 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=16.61;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3155,327,0 chrXV 16998 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=18.25;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3303,345,0 chrXV 17031 . C A 2370 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=15.00;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2403,255,0 chrXV 17043 . A T 2264 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=15.94;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2297,240,0 chrXV 17059 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=16.32;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2400,252,0 chrXV 17074 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=16.02;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2548,270,0 chrXV 17077 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=2.761;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;MQRankSum=0.099;QD=15.25;ReadPosRankSum=2.389;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2489,267,0 chrXV 17172 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.92;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3683,390,0 chrXV 17345 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.56;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3005,312,0 chrXV 17381 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.27;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3221,339,0 chrXV 17392 . T A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.80;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3379,346,0 chrXV 17634 . A C 3056 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=25.26;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3089,327,0 chrXV 17668 . T G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=4.075;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.497;QD=24.85;ReadPosRankSum=1.702;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2891,303,0 chrXV 17754 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=25.00;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2533,273,0 chrXV 17803 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=24.19;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1896,201,0 chrXV 17809 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=22.35;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1799,192,0 chrXV 17831 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=20.94;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1352,150,0 chrXV 17844 . C G 1175 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=20.26;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1208,138,0 chrXV 17946 . A G 1772 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.15;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1805,192,0 chrXV 17955 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.900;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.235;QD=21.85;ReadPosRankSum=1.647;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1803,201,0 chrXV 18026 . T C 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;MQRankSum=-0.247;QD=13.57;ReadPosRankSum=1.670;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:90:793,90,0 chrXV 18028 . A G 692 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=12.81;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:725,81,0 chrXV 18039 . T C 725 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=13.68;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:84:758,84,0 chrXV 18043 . T C 775 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=14.09;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:808,90,0 chrXV 18045 . G A 829 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=15.35;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:862,93,0 chrXV 18115 . T C 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.044;QD=23.14;ReadPosRankSum=1.643;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1838,198,0 chrXV 18250 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=24.90;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2025,216,0 chrXV 18375 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.44;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2404,246,0 chrXV 18556 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=26.25;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2107,219,0 chrXV 18557 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.94;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2082,216,0 chrXV 18605 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.25;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2046,213,0 chrXV 18881 . T A 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.525;QD=22.98;ReadPosRankSum=1.615;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2078,210,0 chrXV 18895 . T G 1907 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.67;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1940,213,0 chrXV 18965 . T G 1989 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.42;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2022,216,0 chrXV 18966 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.48;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2117,222,0 chrXV 19033 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=3.037;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.951;QD=21.11;ReadPosRankSum=2.405;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2355,246,0 chrXV 19069 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.60;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2911,309,0 chrXV 19192 . T C 1591 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.50;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1624,174,0 chrXV 19200 . A G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.049;QD=23.01;ReadPosRankSum=1.635;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1667,177,0 chrXV 19244 . T C 1859 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.62;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1892,198,0 chrXV 19349 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.12;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2542,273,0 chrXV 19376 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.131;QD=25.32;ReadPosRankSum=1.674;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3046,315,0 chrXV 19471 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.481;QD=24.54;ReadPosRankSum=2.411;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3199,345,0 chrXV 19641 . G C 3994.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.69;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3994,432,0 chrXV 19911 . G A 5803.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.56;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5803,601,0 chrXV 19938 . T C 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=226;Dels=0.00;FS=9.209;HaplotypeScore=14.3708;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.498;QD=23.76;ReadPosRankSum=2.923;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:3,219:226:99:5369,574,0 chrXV 20036 . T G 5922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=256;Dels=0.00;FS=3.518;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.641;QD=23.13;ReadPosRankSum=1.691;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5922,625,0 chrXV 20317 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3923;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=26.40;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3485,364,0 chrXV 20516 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=158;Dels=0.00;FS=8.419;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.267;QD=22.45;ReadPosRankSum=3.348;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3547,367,0 chrXV 21195 . T A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4148,430,0 chrXV 21557 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=26.13;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2463,261,0 chrXV 21630 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.92;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2066,210,0 chrXV 21942 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=24.63;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2299,243,0 chrXV 21983 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.81;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1968,207,0 chrXV 21987 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1970,210,0 chrXV 22018 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.01;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2054,213,0 chrXV 22043 . T A 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.702;QD=19.30;ReadPosRankSum=1.702;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2272,234,0 chrXV 22358 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2503,267,0 chrXV 22458 . C T 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=6.5356;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=1.287;QD=25.51;ReadPosRankSum=0.874;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2814,291,0 chrXV 22522 . C T 995 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=5;QD=15.55;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1028,114,0 chrXV 22588 . G A 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.463;DP=102;Dels=0.00;FS=250.968;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.69;MQ0=7;MQRankSum=0.741;QD=5.65;ReadPosRankSum=-0.049;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:59,43:102:99:606,0,952 chrXV 22624 . C T 759.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DP=94;Dels=0.00;FS=242.402;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=34.07;MQ0=2;MQRankSum=-1.209;QD=8.07;ReadPosRankSum=-0.061;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,48:94:99:789,0,904 chrXV 22651 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=2;QD=20.74;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1298,141,0 chrXV 22720 . C A 1108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DP=130;Dels=0.00;FS=1.489;HaplotypeScore=17.5281;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=4;MQRankSum=-0.643;QD=8.52;ReadPosRankSum=0.954;SB=-4.730e+02 GT:AD:DP:GQ:PL 0/1:57,70:130:99:1138,0,866 chrXV 22774 . A G 2098.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=197;Dels=0.00;FS=38.711;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=16;MQRankSum=2.065;QD=10.65;ReadPosRankSum=0.794;SB=-8.760e+02 GT:AD:DP:GQ:PL 0/1:78,119:197:99:2128,0,991 chrXV 22777 . C T 2070.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.042;DP=183;Dels=0.00;FS=39.346;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=16;MQRankSum=2.570;QD=11.31;ReadPosRankSum=1.279;SB=-9.140e+02 GT:AD:DP:GQ:PL 0/1:72,111:183:99:2100,0,881 chrXV 22834 . A G 378 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=20;MQRankSum=-1.734;QD=8.59;ReadPosRankSum=1.300;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:42:411,42,0 chrXV 22864 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.73;MQ0=28;MQRankSum=2.554;QD=0.51;ReadPosRankSum=-0.215;SB=-2.438e-03 GT:AD:DP:GQ:PL 0/1:29,22:51:32:56,0,32 chrXV 23314 . C T 3086.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.016;DP=387;Dels=0.00;FS=31.325;HaplotypeScore=28.7292;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=25;MQRankSum=0.195;QD=7.97;ReadPosRankSum=-1.341;SB=-1.553e+03 GT:AD:DP:GQ:PL 0/1:190,197:387:99:3116,0,3492 chrXV 23443 . T C 2846.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;DP=442;Dels=0.00;FS=9.321;HaplotypeScore=18.0849;MLEAC=1;MLEAF=0.500;MQ=37.26;MQ0=11;MQRankSum=-7.552;QD=6.44;ReadPosRankSum=2.603;SB=-1.248e+03 GT:AD:DP:GQ:PL 0/1:244,194:442:99:2876,0,4831 chrXV 23611 . G A 2081.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;DP=318;Dels=0.00;FS=9.512;HaplotypeScore=14.7649;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=20;MQRankSum=0.984;QD=6.54;ReadPosRankSum=-1.454;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:172,146:318:99:2111,0,1920 chrXV 23614 . T C 1922.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.518;DP=317;Dels=0.00;FS=10.979;HaplotypeScore=12.9846;MLEAC=1;MLEAF=0.500;MQ=32.03;MQ0=23;MQRankSum=1.209;QD=6.06;ReadPosRankSum=-0.856;SB=-3.990e+02 GT:AD:DP:GQ:PL 0/1:174,141:317:99:1952,0,1990 chrXV 23719 . A G 267 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.702;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=3;MQRankSum=-2.691;QD=5.45;ReadPosRankSum=3.898;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:6,43:49:33:300,33,0 chrXV 23725 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=2;QD=3.23;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,30:31:15:133,15,0 chrXV 23728 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=2;QD=0.82;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,27:29:6:55,6,0 chrXV 23731 . C T 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=0;QD=1.11;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,25:25:6:59,6,0 chrXV 23797 . G A 156.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=10.13;MQ0=49;MQRankSum=1.176;QD=1.61;ReadPosRankSum=0.289;SB=2.97 GT:AD:DP:GQ:PL 1/1:47,49:97:24:189,24,0 chrXV 24109 . G A 622 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.465;DP=52;Dels=0.00;FS=9.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=11;MQRankSum=1.564;QD=11.96;ReadPosRankSum=-1.395;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:6,46:52:66:655,66,0 chrXV 24115 . T C 554 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.987;DP=46;Dels=0.00;FS=6.145;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=7;MQRankSum=0.478;QD=12.04;ReadPosRankSum=0.478;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:7,39:46:60:587,60,0 chrXV 24136 . A G 319.21 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981;DP=44;Dels=0.00;FS=5.930;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=7;MQRankSum=0.638;QD=7.25;ReadPosRankSum=-0.101;SB=-1.102e+02 GT:AD:DP:GQ:PL 1/1:7,37:44:16:352,16,0 chrXV 24145 . T C 237.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.7250;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=3;MQRankSum=-1.830;QD=6.09;ReadPosRankSum=0.311;SB=-1.045e+02 GT:AD:DP:GQ:PL 1/1:2,36:39:7:269,7,0 chrXV 24151 . A G 131.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.477;DP=32;Dels=0.00;FS=53.040;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=0;MQRankSum=-1.038;QD=4.10;ReadPosRankSum=3.477;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:5,27:32:18:164,18,0 chrXV 24169 . A G 108.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=9;MQRankSum=-1.114;QD=2.71;ReadPosRankSum=-0.990;SB=-3.240e+00 GT:AD:DP:GQ:PL 0/1:1,36:40:8:138,0,8 chrXV 24190 . C A 474 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2844;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=18;QD=7.65;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,61:62:51:507,51,0 chrXV 24333 . T C 165.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660;DP=172;Dels=0.00;FS=30.321;HaplotypeScore=10.7067;MLEAC=1;MLEAF=0.500;MQ=37.84;MQ0=1;MQRankSum=-4.120;QD=0.96;ReadPosRankSum=-0.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,48:172:99:195,0,2085 chrXV 24352 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=1;QD=16.31;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2919,306,0 chrXV 24376 . G C 2243.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;DP=188;Dels=0.00;FS=57.815;HaplotypeScore=6.4996;MLEAC=1;MLEAF=0.500;MQ=39.48;MQ0=1;MQRankSum=5.688;QD=11.93;ReadPosRankSum=-4.133;SB=-9.240e+02 GT:AD:DP:GQ:PL 0/1:54,132:188:99:2273,0,254 chrXV 24407 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=0.871;QD=19.32;ReadPosRankSum=1.713;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3420,357,0 chrXV 24453 . G A 3441.01 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=11;QD=22.06;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:5,150:156:99:3441,366,0 chrXV 24486 . G C 2869 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=20.2180;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=19;QD=14.20;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,194:202:99:2902,309,0 chrXV 24543 . C A 2672.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.078;DP=312;Dels=0.00;FS=34.944;HaplotypeScore=16.5253;MLEAC=1;MLEAF=0.500;MQ=33.84;MQ0=11;MQRankSum=3.492;QD=8.56;ReadPosRankSum=-0.427;SB=-1.017e+03 GT:AD:DP:GQ:PL 0/1:140,170:312:99:2702,0,2092 chrXV 24640 . G A 1833.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;DP=159;Dels=0.00;FS=91.291;HaplotypeScore=7.2480;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=-0.189;QD=11.53;ReadPosRankSum=3.145;SB=-5.910e+02 GT:AD:DP:GQ:PL 0/1:45,114:159:99:1863,0,702 chrXV 24643 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=0;QD=19.86;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2973,309,0 chrXV 24654 . A G 2044 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=16.62;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2077,225,0 chrXV 24655 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=16.61;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2043,216,0 chrXV 24665 . A G 994.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=116;Dels=0.00;FS=56.477;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=0;MQRankSum=3.428;QD=8.57;ReadPosRankSum=3.645;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,81:116:99:1024,0,279 chrXV 24669 . A G 1241 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=0;MQRankSum=0.411;QD=12.79;ReadPosRankSum=1.696;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1274,138,0 chrXV 24671 . T C 1204 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;QD=12.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1237,132,0 chrXV 24674 . C T 1171 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;QD=12.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1204,132,0 chrXV 24676 . C A 1243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;QD=13.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1276,135,0 chrXV 24683 . G A 1125 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=9.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1158,120,0 chrXV 24688 . A G 1065 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;MQRankSum=-0.158;QD=8.80;ReadPosRankSum=2.942;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:1098,120,0 chrXV 24700 . A C 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.482;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=63.2107;MLEAC=1;MLEAF=0.500;MQ=24.52;MQ0=0;MQRankSum=-0.239;QD=2.15;ReadPosRankSum=0.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,61:128:99:305,0,694 chrXV 24703 . T C 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=65.1552;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=0;MQRankSum=-0.161;QD=2.03;ReadPosRankSum=0.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,68:135:99:304,0,722 chrXV 24711 . T A 1439 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=59.2336;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=10.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1472,156,0 chrXV 24717 . A G 1445 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;MQRankSum=0.871;QD=9.51;ReadPosRankSum=2.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:1478,153,0 chrXV 24722 . A T 1422 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=9.61;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1455,162,0 chrXV 24732 . C T 754.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.186;DP=158;Dels=0.01;FS=2.293;HaplotypeScore=7.3258;MLEAC=1;MLEAF=0.500;MQ=29.46;MQ0=0;MQRankSum=2.284;QD=4.77;ReadPosRankSum=-1.550;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:86,71:157:99:784,0,690 chrXV 24767 . C G 596.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DP=156;Dels=0.00;FS=15.858;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=-2.177;QD=3.82;ReadPosRankSum=-0.210;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:73,83:156:99:626,0,1002 chrXV 24788 . T C 932.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;DP=125;Dels=0.00;FS=29.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.41;MQ0=0;MQRankSum=1.553;QD=7.46;ReadPosRankSum=1.445;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:61,64:125:99:962,0,549 chrXV 24811 . T C 914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;DP=108;Dels=0.00;FS=52.217;HaplotypeScore=76.6024;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=3.513;QD=8.46;ReadPosRankSum=0.643;SB=-5.000e+02 GT:AD:DP:GQ:PL 0/1:44,63:108:99:944,0,280 chrXV 24827 . G A 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=25.5763;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;MQRankSum=0.808;QD=12.03;ReadPosRankSum=0.993;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:935,102,0 chrXV 24844 . C T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;DP=67;Dels=0.00;FS=72.190;HaplotypeScore=85.9430;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=0;MQRankSum=-2.037;QD=0.52;ReadPosRankSum=-0.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,16:67:65:65,0,403 chrXV 24873 . A G 476.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=62;Dels=0.00;FS=67.373;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;MQRankSum=0.481;QD=7.68;ReadPosRankSum=2.648;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:5,57:62:15:509,15,0 chrXV 24895 . G A 364 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=17.3622;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=0;QD=7.14;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:397,39,0 chrXV 24943 . T C 40.08 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DP=79;Dels=0.00;FS=11.196;HaplotypeScore=3.3495;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=1.913;QD=0.51;ReadPosRankSum=1.723;SB=-4.008e+01 GT:AD:DP:GQ:PL 0/1:2,76:79:15:70,0,15 chrXV 24945 . T C 63.05 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=80;Dels=0.00;FS=11.305;HaplotypeScore=4.1382;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-1.063;QD=0.79;ReadPosRankSum=1.680;SB=-4.506e+01 GT:AD:DP:GQ:PL 0/1:2,78:80:17:93,0,17 chrXV 24949 . T C 89.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DP=90;Dels=0.00;FS=8.898;HaplotypeScore=4.3411;MLEAC=1;MLEAF=0.500;MQ=28.75;MQ0=0;MQRankSum=-0.088;QD=0.99;ReadPosRankSum=2.438;SB=-4.223e+01 GT:AD:DP:GQ:PL 0/1:4,86:90:10:119,0,10 chrXV 24972 . G A 342.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127;DP=103;Dels=0.00;FS=10.586;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.02;MQ0=0;MQRankSum=1.362;QD=3.32;ReadPosRankSum=-1.564;SB=-1.621e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:22:375,22,0 chrXV 24977 . T C 371.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=109;Dels=0.00;FS=3.948;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;MQRankSum=-2.603;QD=3.40;ReadPosRankSum=1.668;SB=-2.621e+02 GT:AD:DP:GQ:PL 1/1:4,105:109:21:404,21,0 chrXV 24978 . G A 383.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=9.235;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;MQRankSum=0.365;QD=3.48;ReadPosRankSum=-1.478;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:28:416,28,0 chrXV 24981 . A T 492 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=4.24;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:60:525,60,0 chrXV 25318 . A G 2677 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=4;QD=21.94;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2710,294,0 chrXV 25319 . T A 2804 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=4;QD=22.98;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2837,294,0 chrXV 25443 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=3;QD=24.39;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3008,309,0 chrXV 25455 . C T 2636 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=7;QD=21.97;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2669,279,0 chrXV 25485 . C A 1559 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=22;QD=14.99;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1592,168,0 chrXV 25542 . T C 680 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=40;QD=8.19;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:75:713,75,0 chrXV 25545 . C T 651 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=41;QD=7.75;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:75:684,75,0 chrXV 25647 . C A 752.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=124;Dels=0.00;FS=13.328;HaplotypeScore=13.4961;MLEAC=1;MLEAF=0.500;MQ=18.98;MQ0=57;MQRankSum=-0.833;QD=6.07;ReadPosRankSum=-1.542;SB=-1.282e+02 GT:AD:DP:GQ:PL 0/1:17,104:124:10:782,0,10 chrXV 25722 . T C 204 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.72;MQ0=74;MQRankSum=-1.281;QD=2.10;ReadPosRankSum=1.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,82:97:30:237,30,0 chrXV 25746 . T C 231 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=8.34;MQ0=67;MQRankSum=-1.595;QD=2.51;ReadPosRankSum=1.595;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,91:92:33:264,33,0 chrXV 25797 . A C 733.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.996;DP=205;Dels=0.00;FS=6.755;HaplotypeScore=7.7085;MLEAC=1;MLEAF=0.500;MQ=17.16;MQ0=70;MQRankSum=-2.437;QD=3.58;ReadPosRankSum=3.512;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:84,121:205:99:763,0,701 chrXV 25809 . C T 935.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.329;DP=222;Dels=0.00;FS=27.100;HaplotypeScore=8.3330;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=67;MQRankSum=2.543;QD=4.21;ReadPosRankSum=-2.708;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:121,101:222:99:965,0,776 chrXV 25821 . T C 619.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DP=243;Dels=0.00;FS=35.270;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=18.24;MQ0=71;MQRankSum=-2.565;QD=2.55;ReadPosRankSum=1.662;SB=-3.250e+02 GT:AD:DP:GQ:PL 0/1:123,119:243:99:649,0,1345 chrXV 25824 . C T 568.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.897;DP=250;Dels=0.00;FS=34.516;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=71;MQRankSum=-2.634;QD=2.27;ReadPosRankSum=0.007;SB=-2.430e+02 GT:AD:DP:GQ:PL 0/1:125,125:250:99:598,0,1454 chrXV 25839 . T C 1701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.196;DP=296;Dels=0.00;FS=66.777;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=59;MQRankSum=2.987;QD=5.75;ReadPosRankSum=5.329;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:146,150:296:99:1731,0,1300 chrXV 25860 . C T 1773.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DP=318;Dels=0.00;FS=142.519;HaplotypeScore=9.5962;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=44;MQRankSum=3.267;QD=5.58;ReadPosRankSum=1.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,181:318:99:1803,0,1580 chrXV 25869 . T C 3749.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.2351;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=47;MQRankSum=-1.499;QD=12.41;ReadPosRankSum=3.406;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:4,297:302:99:3749,426,0 chrXV 25917 . A T 1806.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;DP=286;Dels=0.00;FS=246.258;HaplotypeScore=6.9612;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=13;MQRankSum=3.677;QD=6.31;ReadPosRankSum=-0.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,165:286:99:1836,0,1898 chrXV 25923 . T C 1794.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=272;Dels=0.00;FS=257.965;HaplotypeScore=10.0612;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=23;MQRankSum=4.499;QD=6.60;ReadPosRankSum=-0.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,163:272:99:1824,0,1501 chrXV 25952 . A C 2324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.242;DP=266;Dels=0.00;FS=253.454;HaplotypeScore=3.4653;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=36;MQRankSum=6.408;QD=8.74;ReadPosRankSum=2.755;SB=1.11 GT:AD:DP:GQ:PL 0/1:93,172:266:99:2354,0,745 chrXV 25974 . C T 4264.01 filter AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=21.0786;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=40;QD=14.60;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:4264,453,0 chrXV 26016 . A G 5829.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=376;Dels=0.00;FS=3.011;HaplotypeScore=14.4089;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=37;MQRankSum=1.274;QD=15.50;ReadPosRankSum=2.427;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:2,370:376:99:5829,630,0 chrXV 26043 . T C 381.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.912;DP=433;Dels=0.00;FS=82.637;HaplotypeScore=18.5709;MLEAC=1;MLEAF=0.500;MQ=34.90;MQ0=30;MQRankSum=-7.598;QD=0.88;ReadPosRankSum=0.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:319,112:433:99:411,0,5935 chrXV 26052 . T C 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.071;DP=446;Dels=0.00;FS=60.934;HaplotypeScore=25.7322;MLEAC=1;MLEAF=0.500;MQ=35.51;MQ0=27;MQRankSum=-7.406;QD=0.73;ReadPosRankSum=3.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:335,107:446:99:355,0,6264 chrXV 26223 . C T 4316.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.837;DP=299;Dels=0.00;FS=9.373;HaplotypeScore=37.6652;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=68;MQRankSum=7.012;QD=14.43;ReadPosRankSum=1.663;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:71,228:299:99:4316,409,0 chrXV 26343 . G A 99.26 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=13.39;MQ0=39;QD=0.79;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,126:126:15:132,15,0 chrXV 26367 . T C 49.97 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.28;MQ0=29;QD=0.62;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,80:81:9:82,9,0 chrXV 26442 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=16.75;MQ0=157;MQRankSum=-6.521;QD=0.06;ReadPosRankSum=-0.272;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,153:268:47:47,0,1237 chrXV 26465 . C T 1010.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;DP=284;Dels=0.00;FS=4.997;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=176;MQRankSum=6.072;QD=3.56;ReadPosRankSum=-1.100;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:166,117:284:71:1040,0,71 chrXV 26494 . T C 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;DP=209;Dels=0.00;FS=18.130;HaplotypeScore=18.1075;MLEAC=1;MLEAF=0.500;MQ=15.20;MQ0=126;MQRankSum=-4.337;QD=0.09;ReadPosRankSum=1.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,110:209:49:49,0,816 chrXV 26538 . C A 627 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=111;Dels=0.00;FS=19.661;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.99;MQ0=74;MQRankSum=1.641;QD=5.65;ReadPosRankSum=1.586;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:50,61:111:69:660,69,0 chrXV 26574 . C T 441 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.85;MQ0=39;MQRankSum=-0.377;QD=7.11;ReadPosRankSum=1.281;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:33,29:62:30:474,30,0 chrXV 26643 . G A 405 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=78;QD=4.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:45:438,45,0 chrXV 26754 . C T 149.13 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.45;MQ0=17;QD=5.97;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:18:182,18,0 chrXV 26826 . A G 267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=142;Dels=0.00;FS=33.278;HaplotypeScore=4.3509;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=23;MQRankSum=2.071;QD=1.88;ReadPosRankSum=-5.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,37:142:99:297,0,1893 chrXV 26889 . G A 748.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;DP=117;Dels=0.00;FS=18.597;HaplotypeScore=3.7104;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=32;MQRankSum=2.351;QD=6.39;ReadPosRankSum=-3.019;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:52,65:117:99:778,0,723 chrXV 27045 . C T 380 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.05;FS=0.000;HaplotypeScore=23.4031;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=6;QD=8.64;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:45:413,45,0 chrXV 27070 . T A 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;DP=43;Dels=0.02;FS=56.957;HaplotypeScore=11.9482;MLEAC=1;MLEAF=0.500;MQ=24.96;MQ0=10;MQRankSum=0.214;QD=4.02;ReadPosRankSum=0.798;SB=-2.102e+01 GT:AD:DP:GQ:PL 0/1:22,20:42:99:203,0,149 chrXV 27098 . C T 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;DP=42;Dels=0.00;FS=33.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.69;MQ0=18;MQRankSum=-1.658;QD=5.38;ReadPosRankSum=2.619;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,22:42:40:256,0,40 chrXV 27129 . C T 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.41;MQ0=27;QD=4.98;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:27,23:50:30:282,30,0 chrXV 27136 . C A 103.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.67;MQ0=29;QD=2.29;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:29,16:45:15:136,15,0 chrXV 27137 . A T 85.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=30;QD=1.86;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:30,16:46:12:118,12,0 chrXV 27140 . C T 131.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.34;MQ0=31;QD=2.79;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:31,16:47:18:164,18,0 chrXV 27153 . T G 30.77 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.87;MQ0=36;QD=0.68;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:36,9:45:6:62,6,0 chrXV 27157 . G A 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9430;MLEAC=2;MLEAF=1.00;MQ=11.61;MQ0=38;QD=0.59;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:38,9:47:6:59,6,0 chrXV 27195 . A C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.67;MQ0=31;QD=0.74;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:31,4:35:6:57,6,0 chrXV 27205 . T A 112.26 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.08;MQ0=30;QD=3.03;SB=-5.876e+01 GT:AD:DP:GQ:PL 1/1:30,7:37:15:145,15,0 chrXV 27212 . A T 123.26 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=28;QD=3.33;SB=-8.876e+01 GT:AD:DP:GQ:PL 1/1:28,9:37:15:156,15,0 chrXV 27254 . A T 863 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=12;QD=16.28;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:11,42:53:93:896,93,0 chrXV 27321 . T C 930.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.096;DP=161;Dels=0.00;FS=37.720;HaplotypeScore=11.2194;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=33;MQRankSum=2.626;QD=5.78;ReadPosRankSum=-0.503;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:75,85:161:99:960,0,570 chrXV 27481 . T C 2543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.442;DP=328;Dels=0.00;FS=3.377;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=28.75;MQ0=19;MQRankSum=-2.615;QD=7.75;ReadPosRankSum=-0.122;SB=-7.660e+02 GT:AD:DP:GQ:PL 0/1:177,150:327:99:2573,0,3452 chrXV 27500 . A T 2980.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=354;Dels=0.00;FS=3.607;HaplotypeScore=5.8748;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=6;MQRankSum=-3.138;QD=8.42;ReadPosRankSum=2.018;SB=-1.343e+03 GT:AD:DP:GQ:PL 0/1:189,164:353:99:3010,0,3867 chrXV 27515 . A G 7370.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.433;DP=311;Dels=0.00;FS=16.192;HaplotypeScore=7.4527;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=6;MQRankSum=-2.948;QD=23.70;ReadPosRankSum=3.427;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:4,307:311:99:7370,799,0 chrXV 27523 . A G 2521.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DP=293;Dels=0.00;FS=10.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=17;MQRankSum=0.399;QD=8.60;ReadPosRankSum=1.267;SB=-9.090e+02 GT:AD:DP:GQ:PL 0/1:149,144:293:99:2551,0,2466 chrXV 27621 . C T 775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;DP=243;Dels=0.00;FS=3.345;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=135;MQRankSum=0.786;QD=3.19;ReadPosRankSum=-0.225;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,117:243:99:805,0,483 chrXV 27793 . C G 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=20.07;MQ0=65;MQRankSum=0.532;QD=2.77;ReadPosRankSum=-0.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,44:101:99:313,0,379 chrXV 27863 . T A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;DP=61;Dels=0.00;FS=3.358;HaplotypeScore=8.8948;MLEAC=1;MLEAF=0.500;MQ=20.78;MQ0=35;MQRankSum=-0.900;QD=2.10;ReadPosRankSum=0.900;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,35:61:99:158,0,271 chrXV 28168 . T C 559.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.282;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=30.38;MQ0=5;MQRankSum=-1.808;QD=8.10;ReadPosRankSum=-1.604;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:29,40:69:99:589,0,408 chrXV 28251 . T C 381.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=49;Dels=0.00;FS=9.787;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=10;MQRankSum=0.866;QD=7.78;ReadPosRankSum=1.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,25:49:99:411,0,296 chrXV 28443 . T C 226.76 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=28;Dels=0.00;FS=20.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=6;MQRankSum=2.272;QD=8.10;ReadPosRankSum=0.157;SB=-9.771e+01 GT:AD:DP:GQ:PL 1/1:9,19:28:6:258,6,0 chrXV 28567 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=3;QD=18.23;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1072,111,0 chrXV 28603 . A G 989.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=74;Dels=0.00;FS=13.051;HaplotypeScore=6.1453;MLEAC=1;MLEAF=0.500;MQ=41.20;MQ0=5;MQRankSum=2.860;QD=13.36;ReadPosRankSum=3.062;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:24,49:74:99:1019,0,268 chrXV 28631 . C A 946.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.695;DP=112;Dels=0.00;FS=31.287;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=37.71;MQ0=5;MQRankSum=1.972;QD=8.45;ReadPosRankSum=-0.921;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:45,66:112:99:976,0,784 chrXV 28632 . G A 958.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.314;DP=114;Dels=0.00;FS=31.520;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=37.54;MQ0=5;MQRankSum=2.255;QD=8.40;ReadPosRankSum=-0.935;SB=-3.710e+02 GT:AD:DP:GQ:PL 0/1:46,66:114:99:988,0,749 chrXV 28642 . C T 968.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.599;DP=126;Dels=0.00;FS=39.933;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=38.80;MQ0=4;MQRankSum=-3.215;QD=7.68;ReadPosRankSum=2.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,51:126:99:998,0,1120 chrXV 29091 . G A 2518.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.413;DP=341;Dels=0.00;FS=10.410;HaplotypeScore=40.8784;MLEAC=1;MLEAF=0.500;MQ=39.22;MQ0=14;MQRankSum=6.112;QD=7.38;ReadPosRankSum=3.717;SB=-8.880e+02 GT:AD:DP:GQ:PL 0/1:195,146:341:99:2548,0,2654 chrXV 29123 . G A 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.064;DP=358;Dels=0.00;FS=581.619;HaplotypeScore=19.5672;MLEAC=1;MLEAF=0.500;MQ=37.21;MQ0=13;MQRankSum=-11.161;QD=0.41;ReadPosRankSum=3.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,106:358:99:177,0,4191 chrXV 29144 . A G 3069.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.484;DP=369;Dels=0.00;FS=176.702;HaplotypeScore=28.7931;MLEAC=1;MLEAF=0.500;MQ=37.50;MQ0=2;MQRankSum=-12.165;QD=8.32;ReadPosRankSum=1.417;SB=-2.091e+03 GT:AD:DP:GQ:PL 0/1:112,257:369:99:3099,0,1729 chrXV 29207 . A G 679.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.410;DP=430;Dels=0.00;FS=772.107;HaplotypeScore=22.3324;MLEAC=1;MLEAF=0.500;MQ=32.39;MQ0=58;MQRankSum=-7.049;QD=1.58;ReadPosRankSum=1.115;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:319,111:430:99:709,0,4882 chrXV 29219 . G A 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DP=436;Dels=0.00;FS=594.121;HaplotypeScore=25.1895;MLEAC=1;MLEAF=0.500;MQ=30.35;MQ0=65;MQRankSum=-6.314;QD=0.72;ReadPosRankSum=-2.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:335,100:436:99:346,0,4713 chrXV 29224 . C T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.136;DP=434;Dels=0.00;FS=563.557;HaplotypeScore=18.8736;MLEAC=1;MLEAF=0.500;MQ=29.56;MQ0=74;MQRankSum=-5.816;QD=0.37;ReadPosRankSum=-3.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:344,87:434:99:190,0,4576 chrXV 29269 . T C 662.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=184;Dels=0.00;FS=110.513;HaplotypeScore=18.8453;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=31;MQRankSum=-2.686;QD=3.60;ReadPosRankSum=-1.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,58:184:99:692,0,1458 chrXV 29273 . A T 546.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;DP=168;Dels=0.00;FS=115.189;HaplotypeScore=18.5901;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=28;MQRankSum=-3.251;QD=3.25;ReadPosRankSum=-1.233;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,51:168:99:576,0,1295 chrXV 29282 . A T 270.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;DP=135;Dels=0.01;FS=103.220;HaplotypeScore=12.2845;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=21;MQRankSum=-3.154;QD=2.00;ReadPosRankSum=-1.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,38:134:99:300,0,1196 chrXV 29290 . C T 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;DP=140;Dels=0.00;FS=120.054;HaplotypeScore=85.3374;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=12;MQRankSum=-4.634;QD=0.81;ReadPosRankSum=2.633;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,26:140:99:143,0,1061 chrXV 29291 . A G 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;DP=137;Dels=0.00;FS=114.351;HaplotypeScore=86.1260;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=12;MQRankSum=-4.786;QD=0.77;ReadPosRankSum=2.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,26:137:99:135,0,1121 chrXV 29293 . G A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;DP=136;Dels=0.00;FS=120.037;HaplotypeScore=68.6737;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=11;MQRankSum=-3.586;QD=0.81;ReadPosRankSum=2.010;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,27:136:99:140,0,1127 chrXV 29303 . A G 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;DP=166;Dels=0.00;FS=48.494;HaplotypeScore=36.9881;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=4;MQRankSum=4.676;QD=1.19;ReadPosRankSum=-1.868;SB=-3.480e+02 GT:AD:DP:GQ:PL 0/1:71,91:166:99:227,0,680 chrXV 29592 . A G 7317.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.475;DP=362;Dels=0.00;FS=8.276;HaplotypeScore=32.1523;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;MQRankSum=9.260;QD=20.21;ReadPosRankSum=10.428;SB=-3.821e+03 GT:AD:DP:GQ:PL 1/1:44,318:362:99:7317,756,0 chrXV 29618 . C T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DP=402;Dels=0.00;FS=0.856;HaplotypeScore=4.9381;MLEAC=1;MLEAF=0.500;MQ=47.37;MQ0=0;MQRankSum=-12.817;QD=0.17;ReadPosRankSum=-3.292;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/1:295,107:402:98:98,0,5327 chrXV 29621 . G A 5474.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.081;DP=402;Dels=0.00;FS=1.806;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=46.86;MQ0=0;MQRankSum=9.633;QD=13.62;ReadPosRankSum=2.856;SB=-3.255e+03 GT:AD:DP:GQ:PL 0/1:117,285:402:99:5474,0,241 chrXV 29630 . G A 596.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.551;DP=393;Dels=0.00;FS=1.736;HaplotypeScore=13.8816;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=0;MQRankSum=-12.880;QD=1.52;ReadPosRankSum=0.726;SB=-1.147e+03 GT:AD:DP:GQ:PL 0/1:256,137:393:99:626,0,4501 chrXV 29642 . A G 960.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.276;DP=379;Dels=0.00;FS=0.377;HaplotypeScore=20.4645;MLEAC=1;MLEAF=0.500;MQ=43.33;MQ0=0;MQRankSum=-10.437;QD=2.53;ReadPosRankSum=3.457;SB=-1.437e+03 GT:AD:DP:GQ:PL 0/1:212,167:379:99:990,0,3548 chrXV 29645 . G A 1309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.707;DP=375;Dels=0.00;FS=3.944;HaplotypeScore=18.7093;MLEAC=1;MLEAF=0.500;MQ=42.95;MQ0=0;MQRankSum=-9.689;QD=3.49;ReadPosRankSum=3.216;SB=-1.563e+03 GT:AD:DP:GQ:PL 0/1:196,179:375:99:1339,0,3002 chrXV 29654 . A T 1902.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.559;DP=380;Dels=0.00;FS=0.376;HaplotypeScore=16.8424;MLEAC=1;MLEAF=0.500;MQ=41.85;MQ0=0;MQRankSum=-8.465;QD=5.01;ReadPosRankSum=5.362;SB=-2.034e+03 GT:AD:DP:GQ:PL 0/1:168,212:380:99:1932,0,2370 chrXV 29669 . G A 5280.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=13.4920;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=14.31;SB=-4.000e+03 GT:AD:DP:GQ:PL 1/1:0,368:369:99:5280,547,0 chrXV 29810 . G A 5797.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=22.47;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5797,595,0 chrXV 29825 . C T 5793.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=22.54;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5793,592,0 chrXV 29976 . G C 7020.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=6.2726;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.57;SB=-3.661e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7020,733,0 chrXV 29984 . T A 6490.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.94;SB=-4.056e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:6490,705,0 chrXV 30136 . G T 7267.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.43;SB=-3.701e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7267,766,0 chrXV 30179 . C T 6821.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.3628;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.02;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:6821,700,0 chrXV 30248 . G A 5000.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.01;FS=0.000;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.04;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5000,520,0 chrXV 30265 . C G 4841.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.05;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4841,520,0 chrXV 30644 . A C 1455 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=14.70;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1488,165,0 chrXV 30646 . T A 1475 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=15.53;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1508,159,0 chrXV 30649 . C A 1267 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=13.62;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1300,138,0 chrXV 30650 . A G 1221 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=13.13;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1254,138,0 chrXV 30904 . C T 5844.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=23.10;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5844,636,0 chrXV 30969 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=152;Dels=0.01;FS=3.155;HaplotypeScore=18.1337;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=1.242;QD=19.87;ReadPosRankSum=1.820;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:9,141:150:99:3054,353,0 chrXV 30971 . T G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;DP=144;Dels=0.01;FS=21.472;HaplotypeScore=18.3619;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;MQRankSum=-1.265;QD=19.37;ReadPosRankSum=2.994;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:11,130:142:99:2822,332,0 chrXV 30984 . T G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.030;DP=125;Dels=0.00;FS=12.958;HaplotypeScore=26.0389;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;MQRankSum=-2.798;QD=16.14;ReadPosRankSum=1.923;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:20,105:125:99:2051,112,0 chrXV 31010 . T G 239.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;DP=50;Dels=0.00;FS=20.717;HaplotypeScore=102.9910;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=1.455;QD=4.78;ReadPosRankSum=-3.577;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:29,21:50:99:269,0,108 chrXV 31013 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;DP=50;Dels=0.00;FS=29.174;HaplotypeScore=111.2778;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=0;MQRankSum=-2.108;QD=0.28;ReadPosRankSum=0.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,11:50:44:44,0,233 chrXV 31062 . T G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.199;DP=189;Dels=0.00;FS=21.757;HaplotypeScore=158.7797;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=1;MQRankSum=2.353;QD=11.19;ReadPosRankSum=1.962;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:33,156:189:99:2148,104,0 chrXV 31064 . A T 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=196;Dels=0.00;FS=17.626;HaplotypeScore=92.6217;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=1;MQRankSum=2.896;QD=11.94;ReadPosRankSum=0.814;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:31,165:196:99:2373,132,0 chrXV 31101 . T G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.597;DP=251;Dels=0.00;FS=115.299;HaplotypeScore=80.5625;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=4.226;QD=14.66;ReadPosRankSum=-0.022;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:24,227:251:99:3679,334,0 chrXV 31103 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.704;DP=255;Dels=0.00;FS=11.289;HaplotypeScore=75.6388;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;MQRankSum=5.348;QD=12.68;ReadPosRankSum=5.625;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:40,215:255:99:3268,119,0 chrXV 31136 . C T 250.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.681;DP=332;Dels=0.00;FS=8.017;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=40.87;MQ0=0;MQRankSum=-9.848;QD=0.75;ReadPosRankSum=1.603;SB=-1.034e+03 GT:AD:DP:GQ:PL 0/1:211,120:332:99:280,0,3364 chrXV 31142 . A T 281.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;DP=334;Dels=0.00;FS=9.976;HaplotypeScore=13.4883;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=0;MQRankSum=-7.974;QD=0.84;ReadPosRankSum=4.382;SB=-1.046e+03 GT:AD:DP:GQ:PL 0/1:212,122:334:99:311,0,3417 chrXV 31148 . G A 326.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.171;DP=333;Dels=0.00;FS=7.990;HaplotypeScore=12.0341;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=0;MQRankSum=-7.403;QD=0.98;ReadPosRankSum=4.131;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:205,128:333:99:356,0,3245 chrXV 31151 . G A 355.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.063;DP=318;Dels=0.00;FS=13.917;HaplotypeScore=13.6114;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-7.925;QD=1.12;ReadPosRankSum=4.610;SB=-1.163e+03 GT:AD:DP:GQ:PL 0/1:194,124:318:99:385,0,3085 chrXV 31157 . G A 403.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.755;DP=315;Dels=0.00;FS=4.653;HaplotypeScore=22.5000;MLEAC=1;MLEAF=0.500;MQ=37.11;MQ0=0;MQRankSum=-7.204;QD=1.28;ReadPosRankSum=3.638;SB=-1.148e+03 GT:AD:DP:GQ:PL 0/1:188,127:315:99:433,0,2738 chrXV 31184 . G T 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.495;DP=253;Dels=0.00;FS=6.368;HaplotypeScore=101.3173;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-3.336;QD=0.73;ReadPosRankSum=1.146;SB=-7.160e+02 GT:AD:DP:GQ:PL 0/1:167,85:253:99:215,0,2115 chrXV 31186 . A G 171.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;DP=257;Dels=0.00;FS=4.553;HaplotypeScore=83.4300;MLEAC=1;MLEAF=0.500;MQ=31.31;MQ0=0;MQRankSum=-1.812;QD=0.67;ReadPosRankSum=1.241;SB=-7.170e+02 GT:AD:DP:GQ:PL 0/1:174,83:257:99:201,0,2193 chrXV 31188 . A G 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;DP=253;Dels=0.00;FS=6.458;HaplotypeScore=83.6147;MLEAC=1;MLEAF=0.500;MQ=30.78;MQ0=0;MQRankSum=-2.617;QD=0.73;ReadPosRankSum=0.674;SB=-7.200e+02 GT:AD:DP:GQ:PL 0/1:170,83:253:99:215,0,2123 chrXV 31190 . T G 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.448;DP=257;Dels=0.00;FS=6.391;HaplotypeScore=87.2631;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=-2.093;QD=0.69;ReadPosRankSum=0.141;SB=-6.850e+02 GT:AD:DP:GQ:PL 0/1:174,83:257:99:208,0,2195 chrXV 31199 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=54.9178;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=11.72;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:2800,312,0 chrXV 31205 . A T 2200 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=226;Dels=0.00;FS=6.516;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=1.982;QD=9.73;ReadPosRankSum=2.363;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:2233,252,0 chrXV 31211 . G A 2093 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=10.06;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:2126,234,0 chrXV 31214 . G A 2120 SnpCluster AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=54.5560;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=9.68;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:2153,234,0 chrXV 31223 . G T 500.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.234;DP=257;Dels=0.00;FS=76.803;HaplotypeScore=81.9880;MLEAC=1;MLEAF=0.500;MQ=31.32;MQ0=0;MQRankSum=-1.262;QD=1.95;ReadPosRankSum=-10.417;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:167,90:257:99:530,0,1449 chrXV 31244 . A T 267.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=289;Dels=0.00;FS=23.058;HaplotypeScore=16.4824;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=0;MQRankSum=-2.228;QD=0.92;ReadPosRankSum=-0.961;SB=-4.310e+02 GT:AD:DP:GQ:PL 0/1:199,90:289:99:297,0,2723 chrXV 31248 . G A 372.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.701;DP=296;Dels=0.00;FS=17.757;HaplotypeScore=6.8153;MLEAC=1;MLEAF=0.500;MQ=37.06;MQ0=0;MQRankSum=-4.152;QD=1.26;ReadPosRankSum=-0.172;SB=-6.070e+02 GT:AD:DP:GQ:PL 0/1:204,92:296:99:402,0,2816 chrXV 31386 . G A 6552.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.4869;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=25.90;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6552,676,0 chrXV 31492 . C T 6210.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.94;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:6210,649,0 chrXV 31696 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.742;QD=25.14;ReadPosRankSum=1.679;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4927,517,0 chrXV 31790 . T A 2880 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4879;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=23.04;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2913,297,0 chrXV 31795 . T A 2668 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.69;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2701,294,0 chrXV 31946 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=23.90;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3260,348,0 chrXV 31959 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=23.13;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3063,318,0 chrXV 31977 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=20.54;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2601,279,0 chrXV 32012 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=135.3111;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=15.50;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1490,156,0 chrXV 32013 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=135.3111;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=15.53;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1462,150,0 chrXV 32177 . G C 2962 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=21.94;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,130:135:99:2995,321,0 chrXV 32184 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=23.88;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3042,309,0 chrXV 32330 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.5733;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=23.67;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3882,394,0 chrXV 32379 . C T 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.038;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;MQRankSum=-1.859;QD=15.07;ReadPosRankSum=2.373;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2007,204,0 chrXV 32395 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=128;Dels=0.00;FS=6.121;HaplotypeScore=114.2328;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;MQRankSum=-0.882;QD=14.02;ReadPosRankSum=2.945;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:1827,198,0 chrXV 32397 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=0.33;SB=-7.485e+01 GT:AD:DP:GQ:PL 1/1:0,13:126:9:74,9,0 chrXV 32406 . G C 1749 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=13.25;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:1782,192,0 chrXV 32791 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.882;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.575;QD=22.24;ReadPosRankSum=1.669;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2479,258,0 chrXV 33802 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=130;Dels=0.00;FS=2.718;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.955;QD=22.59;ReadPosRankSum=2.393;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2970,318,0 chrXV 34108 . G C 2852 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.41;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2885,303,0 chrXV 34515 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2542,273,0 chrXV 34887 . A C 6903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.050;QD=25.38;ReadPosRankSum=1.706;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:1,268:272:99:6903,727,0 chrXV 35297 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=181;Dels=0.00;FS=2.558;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.183;QD=22.22;ReadPosRankSum=2.917;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4022,432,0 chrXV 35486 . A T 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.019;QD=23.87;ReadPosRankSum=1.698;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2468,252,0 chrXV 35855 . T C 842 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:93:875,93,0 chrXV 46201 . T A 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.006;DP=218;Dels=0.00;FS=2.577;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.738;QD=19.18;ReadPosRankSum=1.098;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4181,433,0 chrXV 46204 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.01;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.49;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4141,424,0 chrXV 46903 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.52;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4364,474,0 chrXV 47575 . C G 5427.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.6452;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.01;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,221:226:99:5427,583,0 chrXV 47652 . A C 4486.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.54;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4486,480,0 chrXV 47740 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.7062;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.73;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2790,291,0 chrXV 47785 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2946,306,0 chrXV 48217 . G A 6299.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.86;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6299,661,0 chrXV 48311 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.01;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3866,408,0 chrXV 48326 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=171;Dels=0.00;FS=5.260;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.303;QD=23.99;ReadPosRankSum=3.357;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:4103,433,0 chrXV 48997 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=29.8470;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.20;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:127:99:2344,237,0 chrXV 50010 . A T 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=10.853;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.616;QD=18.50;ReadPosRankSum=2.950;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2605,261,0 chrXV 50012 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.79;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2506,255,0 chrXV 50074 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=153;Dels=0.00;FS=6.344;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.334;QD=19.97;ReadPosRankSum=2.417;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3089,324,0 chrXV 51101 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2992,304,0 chrXV 51154 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.59;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2864,303,0 chrXV 51379 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.71;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2850,291,0 chrXV 53357 . G C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.45;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3869,409,0 chrXV 53889 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.16;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4679,484,0 chrXV 54678 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.21;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4135,418,0 chrXV 54961 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=25.18;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4634,487,0 chrXV 55283 . T A 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=-0.427;QD=18.25;ReadPosRankSum=2.366;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2186,225,0 chrXV 55310 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=12.49;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1332,138,0 chrXV 55311 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=12.46;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1354,141,0 chrXV 55328 . C T 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=5.534;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=-1.585;QD=11.24;ReadPosRankSum=1.703;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1359,141,0 chrXV 55330 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.501;QD=11.20;ReadPosRankSum=1.675;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1388,147,0 chrXV 55423 . C G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.91;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3936,409,0 chrXV 55506 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=21.1535;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=24.50;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5170,541,0 chrXV 56429 . C A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3600,370,0 chrXV 56638 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2921,297,0 chrXV 57520 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=172;Dels=0.00;FS=9.985;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.712;QD=25.48;ReadPosRankSum=2.959;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:4382,466,0 chrXV 57629 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.23;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3586,381,0 chrXV 57711 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.00;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3073,321,0 chrXV 57712 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.75;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3052,327,0 chrXV 57777 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.2420;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.051;QD=22.84;ReadPosRankSum=1.672;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3952,420,0 chrXV 58231 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.87;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3890,406,0 chrXV 58445 . T C 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=3.005;HaplotypeScore=12.5054;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.226;QD=22.83;ReadPosRankSum=2.417;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5090,544,0 chrXV 59165 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.233;QD=23.81;ReadPosRankSum=1.712;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4072,432,0 chrXV 59478 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.86;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5171,550,0 chrXV 59544 . T C 5795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=239;Dels=0.00;FS=2.902;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.494;QD=24.25;ReadPosRankSum=2.388;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5795,607,0 chrXV 59610 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.27;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4142,436,0 chrXV 59664 . C T 5110.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.17;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5110,529,0 chrXV 60240 . C T 145.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.595;QD=5.58;ReadPosRankSum=1.595;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,24:25:18:178,18,0 chrXV 61712 . T C 5034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=206;Dels=0.00;FS=10.031;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.360;QD=24.44;ReadPosRankSum=2.936;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:5034,529,0 chrXV 61766 . T C 5598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=240;Dels=0.00;FS=5.873;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.992;QD=23.33;ReadPosRankSum=2.929;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:5598,609,0 chrXV 62039 . G A 5896.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.16;SB=-3.417e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5896,604,0 chrXV 62062 . G A 5989.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.49;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5989,610,0 chrXV 62108 . A G 6165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=274;Dels=0.00;FS=7.265;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.085;QD=22.50;ReadPosRankSum=2.405;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:2,272:274:99:6165,658,0 chrXV 62432 . C T 6239.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.9506;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.37;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6239,643,0 chrXV 62744 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.0342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4903,496,0 chrXV 63109 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=22.61;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3221,351,0 chrXV 63281 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.69;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3255,342,0 chrXV 63524 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.282;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.630;QD=24.86;ReadPosRankSum=-0.131;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3307,337,0 chrXV 64043 . T G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0936;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.18;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3569,390,0 chrXV 64228 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1821;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.04;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3940,417,0 chrXV 64300 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.5476;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.09;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3325,337,0 chrXV 64397 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3499,369,0 chrXV 65216 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=172;Dels=0.00;FS=6.032;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.030;QD=24.92;ReadPosRankSum=2.959;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:4287,445,0 chrXV 65318 . G C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.53;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3410,369,0 chrXV 65555 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.40;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2701,285,0 chrXV 65595 . A T 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=5.699;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.666;QD=24.51;ReadPosRankSum=1.699;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2582,267,0 chrXV 65800 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.83;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4668,478,0 chrXV 66022 . A T 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=13.2047;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.448;QD=22.21;ReadPosRankSum=1.714;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4398,463,0 chrXV 66025 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.2047;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.81;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4361,448,0 chrXV 67090 . A T 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.626;QD=19.68;ReadPosRankSum=1.696;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3758,408,0 chrXV 67130 . C G 2682 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7659;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=17.88;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2715,294,0 chrXV 67143 . T G 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=18.13;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2064,222,0 chrXV 67145 . G A 2050 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=18.47;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2083,216,0 chrXV 67147 . A G 2038 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.87;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2071,216,0 chrXV 67149 . C T 2061 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.08;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2094,216,0 chrXV 67175 . C G 1665 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;QD=15.71;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1698,183,0 chrXV 67209 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.33;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1503,156,0 chrXV 67210 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=16.10;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1498,153,0 chrXV 67223 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8923;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=17.05;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1704,180,0 chrXV 67526 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.843;QD=23.62;ReadPosRankSum=2.398;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2277,246,0 chrXV 67774 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.30;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2738,285,0 chrXV 67780 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.61;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2426,267,0 chrXV 67831 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=3.693;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.724;QD=18.83;ReadPosRankSum=1.701;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2142,231,0 chrXV 68535 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3063,324,0 chrXV 68590 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=6.722;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.510;QD=23.98;ReadPosRankSum=2.410;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2982,315,0 chrXV 68779 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.15;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2690,279,0 chrXV 68903 . G T 2671 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2704,279,0 chrXV 69357 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.39;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4463,472,0 chrXV 69442 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.4461;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.54;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4847,522,0 chrXV 69484 . C G 4853.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.2031;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.57;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,219:225:99:4853,528,0 chrXV 69894 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.201;HaplotypeScore=4.8863;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.124;QD=20.54;ReadPosRankSum=1.683;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2908,315,0 chrXV 70127 . C A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.4647;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.22;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4384,457,0 chrXV 70221 . T A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.83;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4339,445,0 chrXV 70272 . C A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.92;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4665,475,0 chrXV 70322 . A G 5180.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.87;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5180,553,0 chrXV 70447 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.4403;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.62;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:5201,538,0 chrXV 71277 . C G 2915 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.57;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2948,309,0 chrXV 71578 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.98;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3099,318,0 chrXV 71821 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4115,433,0 chrXV 72013 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.44;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4032,435,0 chrXV 72741 . A C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=97;Dels=0.00;FS=3.056;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.623;QD=21.14;ReadPosRankSum=1.696;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2084,222,0 chrXV 73175 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.788;DP=202;Dels=0.00;FS=18.474;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.370;QD=22.68;ReadPosRankSum=3.718;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:5,196:202:99:4581,475,0 chrXV 73180 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.02;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4414,448,0 chrXV 73327 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=197;Dels=0.00;FS=8.380;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.284;QD=21.97;ReadPosRankSum=2.412;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4328,474,0 chrXV 73511 . T A 5362.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.94;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5362,553,0 chrXV 74126 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2744,282,0 chrXV 74338 . G T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.27;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4440,466,0 chrXV 74588 . T G 5955.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=18.0645;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.22;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5955,640,0 chrXV 74698 . G A 5785.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.69;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5785,589,0 chrXV 74711 . G A 5752.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.4177;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.47;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5752,595,0 chrXV 74821 . T C 6775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;DP=281;Dels=0.00;FS=2.115;HaplotypeScore=14.0434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.318;QD=24.11;ReadPosRankSum=2.089;SB=-3.524e+03 GT:AD:DP:GQ:PL 1/1:3,278:281:99:6775,736,0 chrXV 74966 . T C 6518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=3.871;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.486;QD=23.36;ReadPosRankSum=1.682;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6518,706,0 chrXV 75161 . T C 5200.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.2968;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.32;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5200,550,0 chrXV 75243 . T C 6049.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.39;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6049,643,0 chrXV 75413 . A C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0980;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.121;QD=21.93;ReadPosRankSum=1.698;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4473,475,0 chrXV 75605 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.69;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3766,397,0 chrXV 75707 . C T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.99;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4730,484,0 chrXV 75794 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=181;Dels=0.00;FS=3.024;HaplotypeScore=13.2150;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.187;QD=24.70;ReadPosRankSum=2.409;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4471,477,0 chrXV 75953 . A G 5002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=6.087;HaplotypeScore=14.5310;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.617;QD=25.26;ReadPosRankSum=2.425;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:5002,523,0 chrXV 76001 . C T 5342.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.8092;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.53;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5342,550,0 chrXV 76115 . T A 6094.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.67;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6094,628,0 chrXV 76139 . A G 6266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=259;Dels=0.00;FS=8.172;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.014;QD=24.19;ReadPosRankSum=2.431;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:6266,661,0 chrXV 76208 . A C 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.524;QD=22.50;ReadPosRankSum=1.716;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4860,523,0 chrXV 76379 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.30;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3289,339,0 chrXV 76391 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1401;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.70;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:2466,261,0 chrXV 76416 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=14.66;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1997,207,0 chrXV 76655 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.027;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=-1.584;QD=18.04;ReadPosRankSum=1.707;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2558,279,0 chrXV 76693 . A C 1831 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=13.66;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1864,201,0 chrXV 76700 . G A 1780 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=13.80;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1813,189,0 chrXV 76703 . G A 1699 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.122;DP=114;Dels=0.00;FS=3.409;HaplotypeScore=2.9858;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;MQRankSum=-1.732;QD=14.90;ReadPosRankSum=1.702;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1732,177,0 chrXV 76704 . G C 1634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;DP=115;Dels=0.00;FS=3.364;HaplotypeScore=2.9858;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;MQRankSum=-1.702;QD=14.21;ReadPosRankSum=1.672;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1667,180,0 chrXV 76707 . A G 1715 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=13.83;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1748,183,0 chrXV 76718 . C T 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=-1.603;QD=15.24;ReadPosRankSum=0.129;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2075,213,0 chrXV 76776 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.41;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2911,309,0 chrXV 77289 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.272;QD=23.94;ReadPosRankSum=1.703;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2978,321,0 chrXV 77324 . A C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=7.863;HaplotypeScore=5.4656;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.033;QD=18.70;ReadPosRankSum=2.363;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2146,222,0 chrXV 77377 . A G 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.536;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-1.155;QD=12.92;ReadPosRankSum=1.700;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1428,150,0 chrXV 77399 . A G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;MQRankSum=-0.836;QD=13.54;ReadPosRankSum=1.702;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1604,168,0 chrXV 77404 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=14.61;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1698,174,0 chrXV 77432 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=19.09;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2458,249,0 chrXV 77697 . C T 4738.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.47;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4738,481,0 chrXV 77754 . T C 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=214;Dels=0.00;FS=6.808;HaplotypeScore=16.4488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.579;QD=24.07;ReadPosRankSum=2.404;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5151,547,0 chrXV 78123 . G C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.11;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3245,354,0 chrXV 78272 . T G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.9670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3686,385,0 chrXV 78367 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2347;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.57;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3089,327,0 chrXV 78663 . T G 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.315;QD=24.71;ReadPosRankSum=1.690;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2084,219,0 chrXV 78910 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.47;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3413,363,0 chrXV 79026 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.69;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3388,349,0 chrXV 79159 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=26.32;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3921,400,0 chrXV 79199 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.61;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3913,403,0 chrXV 79278 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=15.89;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3227,333,0 chrXV 79286 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=14.40;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2914,303,0 chrXV 79297 . C G 2313 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=11.51;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2346,255,0 chrXV 79304 . A T 1794 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=9.97;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:1827,198,0 chrXV 79305 . T A 1773 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=9.91;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:1806,198,0 chrXV 79585 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9533;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.56;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3487,366,0 chrXV 79627 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.70;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3143,319,0 chrXV 79906 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=24.15;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3526,358,0 chrXV 79930 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=20.40;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2910,315,0 chrXV 79941 . T A 2562 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=17.92;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2595,273,0 chrXV 79976 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=16.07;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2781,291,0 chrXV 79987 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=15.12;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2574,270,0 chrXV 80004 . C G 2777 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=16.73;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2810,294,0 chrXV 80008 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.408;DP=173;Dels=0.00;FS=16.416;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=0.828;QD=15.74;ReadPosRankSum=3.387;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:4,166:173:99:2756,300,0 chrXV 80409 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.79;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2150,219,0 chrXV 80423 . G C 1920 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.07;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1953,207,0 chrXV 80449 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3328;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.03;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2157,222,0 chrXV 80586 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.35;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3185,333,0 chrXV 80641 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.306;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.527;QD=20.16;ReadPosRankSum=1.664;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3098,336,0 chrXV 80664 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3355;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.60;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3499,355,0 chrXV 80920 . T C 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=3.834;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.472;QD=24.85;ReadPosRankSum=1.701;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5491,580,0 chrXV 81302 . G C 2681 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=24.82;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2714,285,0 chrXV 81355 . T C 1436 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=0.397;QD=17.30;ReadPosRankSum=1.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1469,150,0 chrXV 81364 . G T 1173 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=16.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1206,123,0 chrXV 81384 . A G 631 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=55.8839;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=9.71;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:72:664,72,0 chrXV 81404 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.03;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:84:794,84,0 chrXV 81409 . T G 847 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.10;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:880,93,0 chrXV 81416 . G A 805 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=11.84;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:84:838,84,0 chrXV 81436 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=16.40;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1460,150,0 chrXV 81481 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=18.26;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2954,324,0 chrXV 81486 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.09;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3227,333,0 chrXV 81543 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.38;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3424,352,0 chrXV 81640 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.082;DP=144;Dels=0.00;FS=1.012;HaplotypeScore=41.4555;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=1;MQRankSum=-0.413;QD=15.35;ReadPosRankSum=-3.058;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:16,126:144:99:2243,224,0 chrXV 81733 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.2381;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.61;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4503,463,0 chrXV 81796 . T A 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.008;QD=24.13;ReadPosRankSum=1.685;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5285,538,0 chrXV 81822 . A G 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=4.304;HaplotypeScore=15.9435;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.431;QD=23.57;ReadPosRankSum=1.672;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5398,565,0 chrXV 81934 . T C 6619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=282;Dels=0.00;FS=2.951;HaplotypeScore=23.1810;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.336;QD=23.47;ReadPosRankSum=2.362;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:2,279:282:99:6619,703,0 chrXV 81988 . T C 6221.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.68;SB=-3.876e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6221,661,0 chrXV 82003 . A G 5954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.123;QD=21.11;ReadPosRankSum=1.720;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:1,281:282:99:5954,631,0 chrXV 82066 . A G 5621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.890;QD=21.96;ReadPosRankSum=1.705;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5621,604,0 chrXV 82183 . T C 5411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=248;Dels=0.00;FS=9.139;HaplotypeScore=22.0290;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.227;QD=21.82;ReadPosRankSum=2.930;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:3,240:248:99:5411,580,0 chrXV 82213 . A G 5531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.408;DP=235;Dels=0.00;FS=5.037;HaplotypeScore=15.2674;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=2.321;QD=23.54;ReadPosRankSum=2.716;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:4,230:235:99:5531,583,0 chrXV 82279 . C T 6563.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.8297;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.54;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6563,670,0 chrXV 82378 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.54;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5178,535,0 chrXV 82666 . T C 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=254;Dels=0.00;FS=5.706;HaplotypeScore=20.1491;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.694;QD=22.97;ReadPosRankSum=2.917;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:5835,630,0 chrXV 82720 . G T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.65;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4028,429,0 chrXV 82759 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.016;QD=20.26;ReadPosRankSum=1.637;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4416,466,0 chrXV 82762 . C G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.68;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4114,441,0 chrXV 82771 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.45;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4298,456,0 chrXV 82988 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=22.40;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2699,282,0 chrXV 82991 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=22.65;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2615,270,0 chrXV 83002 . A T 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.644;QD=22.61;ReadPosRankSum=1.675;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2769,282,0 chrXV 83044 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.75;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2481,261,0 chrXV 83069 . T C 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=3.609;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.600;QD=21.24;ReadPosRankSum=1.698;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2178,228,0 chrXV 83321 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=12.4179;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.31;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3144,327,0 chrXV 83453 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.80;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2770,282,0 chrXV 83506 . G A 237.01 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=70.7347;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=2.24;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:27:270,27,0 chrXV 83518 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=12.40;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1186,123,0 chrXV 83622 . T C 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;MQRankSum=0.380;QD=22.26;ReadPosRankSum=1.690;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1858,201,0 chrXV 83636 . T A 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=3.049;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=-0.782;QD=19.78;ReadPosRankSum=2.373;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1932,201,0 chrXV 83646 . T A 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.462;QD=20.72;ReadPosRankSum=1.694;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1898,198,0 chrXV 83647 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=-0.308;QD=20.73;ReadPosRankSum=1.694;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1919,201,0 chrXV 83714 . A C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.157;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=0.619;QD=21.15;ReadPosRankSum=1.639;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2402,261,0 chrXV 83725 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.03;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2183,234,0 chrXV 83736 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.42;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2346,237,0 chrXV 83798 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.22;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2792,288,0 chrXV 83863 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.355;QD=24.38;ReadPosRankSum=2.413;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3291,348,0 chrXV 84190 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.9575;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.80;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:5185,541,0 chrXV 84226 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.87;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4424,460,0 chrXV 84370 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.52;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4954,526,0 chrXV 84388 . C T 4907.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.72;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4907,511,0 chrXV 84463 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.17;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3082,324,0 chrXV 84490 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.83;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3813,388,0 chrXV 84628 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=20.9798;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.26;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4318,451,0 chrXV 85000 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.0673;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.94;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5208,529,0 chrXV 85011 . G C 4687.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.8586;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.00;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4687,496,0 chrXV 85161 . T C 2781 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.80;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2814,303,0 chrXV 85524 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=7.439;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.221;QD=26.80;ReadPosRankSum=1.704;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3296,348,0 chrXV 85606 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.46;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3268,345,0 chrXV 85645 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.58;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4079,438,0 chrXV 85809 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.292;QD=23.60;ReadPosRankSum=1.675;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4296,457,0 chrXV 86295 . C A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4122;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3569,364,0 chrXV 86817 . G T 2982 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.09;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3015,315,0 chrXV 87033 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=26.24;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2185,225,0 chrXV 87062 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.11;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2082,213,0 chrXV 87079 . C A 1879 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.91;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1912,195,0 chrXV 87126 . G T 1700 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.08;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1733,186,0 chrXV 87163 . T A 1495 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.11;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1528,156,0 chrXV 87202 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.11;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1489,153,0 chrXV 87280 . A T 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.968;QD=19.57;ReadPosRankSum=1.630;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1364,138,0 chrXV 87288 . T G 1224 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=52.7625;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.12;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1257,132,0 chrXV 87344 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=12.8012;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.643;QD=21.06;ReadPosRankSum=1.683;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1549,168,0 chrXV 88067 . G A 6255.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.72;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6255,646,0 chrXV 88251 . A G 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=218;Dels=0.00;FS=5.481;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.258;QD=22.16;ReadPosRankSum=2.931;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4830,522,0 chrXV 88413 . C A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.90;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3776,399,0 chrXV 88659 . G T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4142,424,0 chrXV 89001 . A G 5435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=216;Dels=0.00;FS=3.003;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.662;QD=25.16;ReadPosRankSum=2.347;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:5435,577,0 chrXV 89207 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.89;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4838,508,0 chrXV 89223 . T A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.94;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4346,457,0 chrXV 89229 . A C 4072.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.5699;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.26;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4072,427,0 chrXV 90174 . A C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.501;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.512;QD=15.96;ReadPosRankSum=1.689;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2570,270,0 chrXV 90232 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.08;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2664,276,0 chrXV 90313 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.558;QD=21.70;ReadPosRankSum=1.703;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2659,282,0 chrXV 90328 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.40;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2811,291,0 chrXV 90466 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=14.3910;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.45;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2435,252,0 chrXV 90505 . T A 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.399;QD=21.32;ReadPosRankSum=2.858;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3210,333,0 chrXV 90508 . A T 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.380;DP=152;Dels=0.00;FS=3.996;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.606;QD=20.99;ReadPosRankSum=0.962;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3223,317,0 chrXV 90526 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.304;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.364;QD=21.75;ReadPosRankSum=-1.668;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3610,358,0 chrXV 90565 . A T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=23.55;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4216,439,0 chrXV 90661 . C A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=26.29;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4232,430,0 chrXV 90685 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=201;Dels=0.00;FS=2.913;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.265;QD=23.12;ReadPosRankSum=2.425;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4647,493,0 chrXV 90781 . G A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.56;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5008,532,0 chrXV 90802 . A C 5153.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.3756;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.50;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5153,561,0 chrXV 90886 . C T 5757.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.4645;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.03;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5757,610,0 chrXV 90949 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=210;Dels=0.00;FS=3.026;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.253;QD=23.59;ReadPosRankSum=2.426;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4954,523,0 chrXV 90982 . A G 5951.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.1680;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.59;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5951,625,0 chrXV 91199 . G C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.12;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3618,381,0 chrXV 91489 . A G 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.554;QD=23.56;ReadPosRankSum=1.703;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2790,300,0 chrXV 91614 . T C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.701;QD=26.31;ReadPosRankSum=1.701;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:3032,315,0 chrXV 91686 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.55;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2955,303,0 chrXV 91737 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3035,307,0 chrXV 91777 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3184,324,0 chrXV 92619 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=15.12;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1742,192,0 chrXV 92649 . A C 1029 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3217;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=10.39;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1062,114,0 chrXV 92652 . T C 1077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9876;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;MQRankSum=-1.732;QD=10.56;ReadPosRankSum=1.698;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1110,117,0 chrXV 92656 . G C 1217 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9876;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=10.96;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1250,132,0 chrXV 92669 . T C 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.981;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-2.076;QD=12.02;ReadPosRankSum=2.406;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1379,153,0 chrXV 92690 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=14.41;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1532,165,0 chrXV 92712 . A C 1888 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=16.56;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1921,207,0 chrXV 92889 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=24.42;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2915,294,0 chrXV 93068 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.31;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2659,276,0 chrXV 93082 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=148;Dels=0.00;FS=2.587;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.363;QD=18.09;ReadPosRankSum=2.884;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:2710,291,0 chrXV 93135 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.56;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3045,312,0 chrXV 93148 . A C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.461;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-0.610;QD=18.80;ReadPosRankSum=1.708;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2702,291,0 chrXV 93175 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0085;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.76;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2622,276,0 chrXV 93859 . G A 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.1007;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.577;QD=13.01;ReadPosRankSum=1.547;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1503,162,0 chrXV 93950 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.44;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2413,246,0 chrXV 93980 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=93;Dels=0.00;FS=2.593;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.901;QD=24.28;ReadPosRankSum=2.924;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,89:93:99:2291,243,0 chrXV 94048 . T G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.280;QD=20.96;ReadPosRankSum=1.644;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2380,255,0 chrXV 94056 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.71;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2208,237,0 chrXV 94227 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.62;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3103,330,0 chrXV 94445 . A T 2586 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.92;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2619,282,0 chrXV 94574 . C A 2097 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.1383;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.84;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2130,222,0 chrXV 94646 . T A 872 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=16.77;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:905,93,0 chrXV 94686 . T A 1151 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=24.0420;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=18.27;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1184,123,0 chrXV 94688 . A T 1103 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;MQRankSum=-1.549;QD=17.51;ReadPosRankSum=2.372;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1136,120,0 chrXV 94694 . G A 1168 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=18.25;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1201,126,0 chrXV 94697 . G A 1195 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=18.11;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1228,126,0 chrXV 94761 . T C 611 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.09;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:644,69,0 chrXV 94782 . T C 397 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.85;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:430,45,0 chrXV 94810 . G A 145.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.13;SB=-1.079e+02 GT:AD:DP:GQ:PL 1/1:0,9:9:18:178,18,0 chrXV 95393 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=25.31;ReadPosRankSum=1.668;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4125,441,0 chrXV 95687 . T G 3616.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3616,390,0 chrXV 95966 . T A 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=24.19;ReadPosRankSum=1.679;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3178,325,0 chrXV 96219 . G T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.18;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4407,448,0 chrXV 96634 . C A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=26.24;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3857,400,0 chrXV 96853 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=143;Dels=0.00;FS=10.311;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.835;QD=21.60;ReadPosRankSum=2.921;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:3,137:143:99:3122,339,0 chrXV 96855 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=4.8576;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=24.08;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3299,337,0 chrXV 96867 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.145;QD=23.39;ReadPosRankSum=1.653;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3121,321,0 chrXV 96979 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.22;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2642,282,0 chrXV 96983 . T A 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.01;FS=6.468;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.201;QD=19.73;ReadPosRankSum=2.374;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2618,267,0 chrXV 97058 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1328;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.48;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3287,339,0 chrXV 97129 . T A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.06;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3649,367,0 chrXV 97199 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.55;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3806,405,0 chrXV 97357 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.73;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3734,391,0 chrXV 97637 . T G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3393,366,0 chrXV 97910 . A G 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.109;QD=23.39;ReadPosRankSum=1.697;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2372,258,0 chrXV 97994 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.454;QD=23.37;ReadPosRankSum=1.691;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1996,210,0 chrXV 98162 . T G 1925 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1958,201,0 chrXV 98544 . T A 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.664;DP=111;Dels=0.00;FS=9.515;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.409;QD=23.95;ReadPosRankSum=2.828;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2692,276,0 chrXV 98627 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3359,340,0 chrXV 98723 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.30;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3492,352,0 chrXV 98780 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.35;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3255,348,0 chrXV 98981 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.33;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3749,399,0 chrXV 99391 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.45;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3412,349,0 chrXV 99428 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=153;Dels=0.00;FS=2.585;HaplotypeScore=12.6634;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.576;QD=24.96;ReadPosRankSum=2.954;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3819,405,0 chrXV 99543 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3742,394,0 chrXV 99594 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=132;Dels=0.00;FS=8.354;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.596;QD=22.44;ReadPosRankSum=2.393;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2995,315,0 chrXV 99654 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.01;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3456,366,0 chrXV 99664 . A T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.9882;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.79;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3783,385,0 chrXV 99690 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.43;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3450,360,0 chrXV 99844 . A G 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=4.681;HaplotypeScore=11.7385;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.136;QD=26.08;ReadPosRankSum=1.714;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4981,529,0 chrXV 99913 . T C 4879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=197;Dels=0.00;FS=1.869;HaplotypeScore=8.8772;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-2.268;QD=24.77;ReadPosRankSum=3.619;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:5,192:197:99:4879,494,0 chrXV 100003 . G A 5921.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.3400;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.40;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5921,645,0 chrXV 100171 . G A 5163.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6546;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=25.06;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5163,520,0 chrXV 100194 . A G 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.943;QD=23.82;ReadPosRankSum=1.715;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4835,505,0 chrXV 100228 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=195;Dels=0.00;FS=5.247;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.005;QD=21.44;ReadPosRankSum=2.839;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4180,447,0 chrXV 100273 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.9700;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.40;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4470,472,0 chrXV 100316 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.694;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.583;QD=18.77;ReadPosRankSum=1.715;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:3754,393,0 chrXV 100319 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=208;Dels=0.00;FS=8.373;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.957;QD=18.07;ReadPosRankSum=3.351;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:3758,394,0 chrXV 100603 . A G 5968.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.1783;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.59;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5968,643,0 chrXV 100717 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.79;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4288,459,0 chrXV 101077 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2985,306,0 chrXV 101328 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:52:99:1027,114,0 chrXV 101400 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1720,183,0 chrXV 101463 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2316,246,0 chrXV 101577 . C A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3494,352,0 chrXV 101828 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=186;Dels=0.00;FS=15.974;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.516;QD=22.47;ReadPosRankSum=2.875;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4179,450,0 chrXV 101984 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.66;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3699,390,0 chrXV 102078 . C A 2998 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.42;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3031,324,0 chrXV 102107 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.53;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2782,294,0 chrXV 102146 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=169;Dels=0.00;FS=12.412;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.057;QD=22.96;ReadPosRankSum=3.407;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:3880,409,0 chrXV 102204 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.18;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4170,430,0 chrXV 102305 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.59;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3276,345,0 chrXV 102386 . A T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.25;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3863,397,0 chrXV 102500 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.9370;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.23;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3468,372,0 chrXV 102671 . A T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6203;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.85;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3435,358,0 chrXV 102760 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.020;QD=23.73;ReadPosRankSum=1.712;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4106,427,0 chrXV 102989 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3972,409,0 chrXV 103443 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.27;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3639,399,0 chrXV 103521 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.27;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2585,267,0 chrXV 103524 . A G 2452 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.46;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2485,267,0 chrXV 104098 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9652;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.89;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3677,396,0 chrXV 104119 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=151;Dels=0.00;FS=13.308;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.759;QD=22.37;ReadPosRankSum=3.389;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3378,363,0 chrXV 104628 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.90;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3834,403,0 chrXV 104808 . G C 4254.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.45;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4254,451,0 chrXV 104814 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=24.78;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4287,448,0 chrXV 104826 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.633;QD=23.17;ReadPosRankSum=1.691;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3893,406,0 chrXV 104856 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.876;QD=22.49;ReadPosRankSum=1.712;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3823,411,0 chrXV 105006 . A G 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=190;Dels=0.00;FS=7.855;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.018;QD=24.70;ReadPosRankSum=2.371;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4693,493,0 chrXV 105232 . T G 3941.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.96;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3941,423,0 chrXV 105242 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.11;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4010,426,0 chrXV 105283 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.7963;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.73;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3840,408,0 chrXV 105291 . T G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.60;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3979,420,0 chrXV 105423 . T A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.99;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4426,457,0 chrXV 105555 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=3.083;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.713;QD=23.85;ReadPosRankSum=1.713;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4316,465,0 chrXV 105680 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3664,396,0 chrXV 105728 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.5387;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3318,360,0 chrXV 106151 . C G 3010 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.30;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3043,321,0 chrXV 106156 . C G 2854 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.12;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2887,303,0 chrXV 106264 . C G 2044 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.65;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2077,216,0 chrXV 106762 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.4123;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.47;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4534,463,0 chrXV 107219 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3695,399,0 chrXV 107546 . C T 5996.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.7136;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.28;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5996,622,0 chrXV 107676 . G A 4897.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.98;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4897,505,0 chrXV 107690 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.860;QD=22.97;ReadPosRankSum=2.327;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4594,486,0 chrXV 107858 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=23.33;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2739,285,0 chrXV 107861 . C T 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=116;Dels=0.00;FS=3.086;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.090;QD=22.60;ReadPosRankSum=-0.567;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2655,256,0 chrXV 108245 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3861,411,0 chrXV 108354 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.47;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4670,496,0 chrXV 108394 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.1566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4600,475,0 chrXV 108576 . G A 5042.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.60;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5042,520,0 chrXV 108945 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.79;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2582,261,0 chrXV 108950 . T A 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.107;QD=21.41;ReadPosRankSum=1.671;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2452,255,0 chrXV 109106 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.41;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2655,273,0 chrXV 109676 . C A 5660.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.1550;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.98;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5660,583,0 chrXV 109765 . T C 4357.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8991;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.23;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4357,474,0 chrXV 109895 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.5088;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3056,321,0 chrXV 110203 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.47;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2976,312,0 chrXV 110413 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.860;QD=22.24;ReadPosRankSum=1.632;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3125,330,0 chrXV 110483 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.42;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3207,339,0 chrXV 110509 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.41;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3123,327,0 chrXV 110676 . T C 1237 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1270,135,0 chrXV 110797 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=4.71;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrXV 110800 . A G 55.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.93;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:88,12,0 chrXV 110803 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.94;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:96,12,0 chrXV 110806 . A G 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=8.19;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:98,12,0 chrXV 110809 . A G 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=7.50;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:100,12,0 chrXV 110812 . A G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.95;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:102,12,0 chrXV 110815 . A G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=6.59;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:105,12,0 chrXV 110818 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=6.29;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:108,12,0 chrXV 110844 . A G 243 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-1.552;QD=12.79;ReadPosRankSum=-1.004;SB=0.039 GT:AD:DP:GQ:PL 1/1:1,18:19:30:276,30,0 chrXV 111070 . T C 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;MQRankSum=-0.247;QD=18.39;ReadPosRankSum=1.687;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1449,150,0 chrXV 111076 . T G 1421 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=17.76;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1454,156,0 chrXV 111086 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=67.6556;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=16.84;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1464,153,0 chrXV 111105 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=14.26;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1202,129,0 chrXV 111138 . T G 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;MQRankSum=-2.201;QD=14.61;ReadPosRankSum=2.276;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1479,159,0 chrXV 111160 . T A 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-1.115;QD=14.07;ReadPosRankSum=1.561;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1482,156,0 chrXV 111161 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=11.2424;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=13.97;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1486,153,0 chrXV 111207 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=89.8853;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=17.77;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2023,210,0 chrXV 111244 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=19.05;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1881,198,0 chrXV 111282 . A C 1770 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=17.52;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1803,192,0 chrXV 111293 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0707;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=17.46;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2041,219,0 chrXV 111761 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=156;Dels=0.00;FS=6.939;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.341;QD=21.82;ReadPosRankSum=2.354;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3404,369,0 chrXV 111851 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3772,388,0 chrXV 112082 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1918,207,0 chrXV 112572 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.62;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3447,355,0 chrXV 113253 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.100;QD=15.41;ReadPosRankSum=1.672;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:1821,192,0 chrXV 113345 . G C 3160 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=15.3907;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;QD=23.94;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3193,345,0 chrXV 113612 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.83;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2789,288,0 chrXV 113653 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3238,322,0 chrXV 113780 . G T 667 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.53;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:75:700,75,0 chrXV 113919 . A G 566 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.26;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:63:599,63,0 chrXV 113957 . T A 776 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.90;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:809,87,0 chrXV 114031 . T G 1593 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1626,174,0 chrXV 114097 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=27.28;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2106,219,0 chrXV 114519 . C A 5432.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.69;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5432,559,0 chrXV 114736 . G A 6556.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.7997;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.75;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6556,685,0 chrXV 114813 . G A 8663.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=20.4418;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.40;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:0,350:355:99:8663,898,0 chrXV 114935 . C T 10353.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=22.5599;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=25.07;SB=-5.350e+03 GT:AD:DP:GQ:PL 1/1:0,411:413:99:10353,1064,0 chrXV 115050 . G A 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.751;DP=691;Dels=0.00;FS=7.277;HaplotypeScore=103.9140;MLEAC=1;MLEAF=0.500;MQ=44.60;MQ0=0;MQRankSum=-9.638;QD=0.09;ReadPosRankSum=-6.701;SB=-1.014e+03 GT:AD:DP:GQ:PL 0/1:541,147:691:95:95,0,9935 chrXV 115062 . G A 1575.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.025;DP=711;Dels=0.00;FS=2.063;HaplotypeScore=157.9461;MLEAC=1;MLEAF=0.500;MQ=43.72;MQ0=0;MQRankSum=-4.533;QD=2.22;ReadPosRankSum=-8.012;SB=-1.727e+03 GT:AD:DP:GQ:PL 0/1:480,227:711:99:1605,0,8032 chrXV 115071 . A G 2094.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DP=698;Dels=0.00;FS=3.875;HaplotypeScore=195.6784;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=-1.486;QD=3.00;ReadPosRankSum=-6.473;SB=-1.566e+03 GT:AD:DP:GQ:PL 0/1:468,228:698:99:2124,0,7050 chrXV 115074 . A G 5050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.935;DP=700;Dels=0.00;FS=0.882;HaplotypeScore=348.9224;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=0;MQRankSum=1.922;QD=7.21;ReadPosRankSum=3.029;SB=-2.848e+03 GT:AD:DP:GQ:PL 0/1:374,324:700:99:5050,0,4240 chrXV 115083 . A G 1282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.015;DP=664;Dels=0.00;FS=0.000;HaplotypeScore=406.5468;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=0;MQRankSum=-9.105;QD=1.93;ReadPosRankSum=7.093;SB=-1.100e+03 GT:AD:DP:GQ:PL 0/1:477,187:664:99:1312,0,7511 chrXV 115092 . G A 5993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.439;DP=610;Dels=0.00;FS=1.998;HaplotypeScore=379.8944;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=0;MQRankSum=-12.889;QD=9.82;ReadPosRankSum=-0.028;SB=-3.606e+03 GT:AD:DP:GQ:PL 0/1:152,457:610:99:5993,0,1725 chrXV 115095 . A G 4371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.616;DP=599;Dels=0.00;FS=11.880;HaplotypeScore=202.1970;MLEAC=1;MLEAF=0.500;MQ=40.52;MQ0=0;MQRankSum=-10.315;QD=7.30;ReadPosRankSum=-5.505;SB=-2.376e+03 GT:AD:DP:GQ:PL 0/1:277,322:599:99:4371,0,3250 chrXV 115104 . G A 4096.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DP=535;Dels=0.00;FS=4.973;HaplotypeScore=197.0571;MLEAC=1;MLEAF=0.500;MQ=40.24;MQ0=0;MQRankSum=-14.517;QD=7.66;ReadPosRankSum=-8.626;SB=-2.321e+03 GT:AD:DP:GQ:PL 0/1:209,326:535:99:4096,0,2455 chrXV 115107 . A G 2675.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.707;DP=530;Dels=0.00;FS=15.162;HaplotypeScore=151.0178;MLEAC=1;MLEAF=0.500;MQ=40.33;MQ0=0;MQRankSum=-10.010;QD=5.05;ReadPosRankSum=-8.721;SB=-1.434e+03 GT:AD:DP:GQ:PL 0/1:299,231:530:99:2705,0,3640 chrXV 115116 . G A 2925.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.343;DP=453;Dels=0.00;FS=17.414;HaplotypeScore=241.6020;MLEAC=1;MLEAF=0.500;MQ=41.81;MQ0=0;MQRankSum=-12.054;QD=6.46;ReadPosRankSum=-6.192;SB=-1.061e+03 GT:AD:DP:GQ:PL 0/1:233,220:453:99:2955,0,2720 chrXV 115119 . A G 610.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.244;DP=443;Dels=0.00;FS=6.088;HaplotypeScore=229.9086;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=0;MQRankSum=-6.549;QD=1.38;ReadPosRankSum=-7.305;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:362,81:443:99:640,0,4978 chrXV 115122 . A G 268.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.096;DP=438;Dels=0.00;FS=25.339;HaplotypeScore=229.7592;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=0;MQRankSum=-4.595;QD=0.61;ReadPosRankSum=0.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:379,59:438:99:298,0,5245 chrXV 115128 . G A 1636.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.305;DP=348;Dels=0.00;FS=23.763;HaplotypeScore=163.1085;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=0;MQRankSum=-9.976;QD=4.70;ReadPosRankSum=-2.507;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:227,121:348:99:1666,0,2839 chrXV 115164 . A G,T 1136.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.227;DP=76;Dels=0.00;FS=13.716;HaplotypeScore=26.4690;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.12;MQ0=0;MQRankSum=2.327;QD=14.95;ReadPosRankSum=0.415;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/2:8,42,26:76:99:1196,351,246,845,0,800 chrXV 115167 . A T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;DP=79;Dels=0.00;FS=54.349;HaplotypeScore=18.5173;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=1.397;QD=1.24;ReadPosRankSum=-1.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,12:79:99:128,0,1195 chrXV 115253 . C T 5359.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=23.3187;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.78;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5359,556,0 chrXV 115336 . G T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=23.10;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5267,559,0 chrXV 115446 . T C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7511;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.261;QD=22.69;ReadPosRankSum=1.714;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4333,457,0 chrXV 115967 . A G 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.289;QD=23.34;ReadPosRankSum=1.675;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1457,153,0 chrXV 116289 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8809;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.37;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1631,171,0 chrXV 116543 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.85;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2327,249,0 chrXV 116621 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.03;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2258,237,0 chrXV 116712 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.60;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2665,270,0 chrXV 116735 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.00;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2217,228,0 chrXV 116873 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.86;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3159,327,0 chrXV 117048 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.33;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3349,343,0 chrXV 117077 . A G 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.7724;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.634;QD=18.24;ReadPosRankSum=1.704;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2313,255,0 chrXV 117153 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.9095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.609;QD=21.74;ReadPosRankSum=1.615;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3251,339,0 chrXV 117295 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=6.043;HaplotypeScore=13.8316;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.101;QD=24.91;ReadPosRankSum=2.959;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4209,442,0 chrXV 117367 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3697,393,0 chrXV 117509 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=23.88;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3161,342,0 chrXV 117689 . C A 1054 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=17.00;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1087,114,0 chrXV 117698 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=16.53;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:84:843,84,0 chrXV 123705 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=22.45;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2929,315,0 chrXV 125400 . G A 5405.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=26.89;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5405,550,0 chrXV 125569 . C T 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=177;Dels=0.00;FS=5.173;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.124;QD=15.10;ReadPosRankSum=3.052;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:2705,326,0 chrXV 125570 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.135;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.7632;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.739;QD=15.25;ReadPosRankSum=4.127;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:6,166:175:99:2702,326,0 chrXV 125599 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.64;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3529,369,0 chrXV 125641 . C A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.9978;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.85;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3565,370,0 chrXV 126162 . T A 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=104;Dels=0.00;FS=2.533;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=1.884;QD=23.41;ReadPosRankSum=2.816;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2468,270,0 chrXV 126255 . C T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5314,544,0 chrXV 126462 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.2756;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.28;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3661,382,0 chrXV 126617 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=3.027;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.465;QD=23.95;ReadPosRankSum=2.418;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3760,396,0 chrXV 126797 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9765;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.49;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3181,322,0 chrXV 126866 . C G 2471 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.25;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2504,261,0 chrXV 126868 . T G 2481 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.50;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2514,264,0 chrXV 127096 . A G 2336 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=26.85;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2369,243,0 chrXV 127240 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2693,279,0 chrXV 128405 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.3888;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.26;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3605,370,0 chrXV 128527 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.70;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3902,417,0 chrXV 128581 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4246,442,0 chrXV 128693 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3562,390,0 chrXV 128788 . C G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.27;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3863,417,0 chrXV 129004 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.27;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2314,234,0 chrXV 129347 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.8098;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.63;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2940,306,0 chrXV 129440 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.70;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3067,327,0 chrXV 129576 . G C 3026 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.46;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3059,330,0 chrXV 129926 . C G 2286 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.33;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2319,252,0 chrXV 130049 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=7.208;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.097;QD=24.73;ReadPosRankSum=2.363;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2852,303,0 chrXV 130079 . A C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.600;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.990;QD=23.47;ReadPosRankSum=1.705;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3037,318,0 chrXV 130106 . C A 2566 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.51;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2599,267,0 chrXV 130136 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.03;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2500,261,0 chrXV 130283 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.71;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3266,337,0 chrXV 130289 . A C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.632;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.416;QD=19.22;ReadPosRankSum=1.709;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:2974,315,0 chrXV 130337 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.98;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3473,358,0 chrXV 131195 . A T 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=3.017;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.163;QD=25.24;ReadPosRankSum=2.427;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5527,565,0 chrXV 131249 . T G 5168.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.93;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5168,550,0 chrXV 131327 . C T 4724.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4724,484,0 chrXV 131471 . T G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.92;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4354,462,0 chrXV 131661 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0508;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.82;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3772,388,0 chrXV 131688 . T A 2840 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.6069;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.72;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2873,294,0 chrXV 131694 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7794;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.935;QD=19.91;ReadPosRankSum=1.705;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2561,267,0 chrXV 131747 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.71;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2332,255,0 chrXV 131858 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.62;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3816,391,0 chrXV 131948 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=24.04;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3014,324,0 chrXV 131978 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.26;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2708,285,0 chrXV 131990 . T A 2473 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.90;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2506,252,0 chrXV 132000 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.87;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2461,255,0 chrXV 132086 . T A 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.517;QD=20.02;ReadPosRankSum=1.629;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2716,288,0 chrXV 132089 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.282;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-1.181;QD=18.69;ReadPosRankSum=1.653;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2519,267,0 chrXV 132152 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.98;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2649,279,0 chrXV 132179 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=7.337;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.373;QD=25.90;ReadPosRankSum=1.679;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3367,346,0 chrXV 132221 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.75;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3712,393,0 chrXV 132419 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7067;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.69;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,252,0 chrXV 132501 . G A 783 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.03;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:816,87,0 chrXV 132600 . A G 2112 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.85;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2145,225,0 chrXV 132710 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.87;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2874,297,0 chrXV 132713 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.28;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2897,294,0 chrXV 132965 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.76;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3683,379,0 chrXV 133313 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3207,330,0 chrXV 133472 . C A 2997 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.98;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3030,324,0 chrXV 133892 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.56;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3297,345,0 chrXV 134036 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.65;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2999,307,0 chrXV 134063 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.13;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2799,294,0 chrXV 135275 . C G 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3168,339,0 chrXV 135779 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.249;QD=22.75;ReadPosRankSum=1.711;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3776,405,0 chrXV 135786 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.41;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3676,396,0 chrXV 136016 . C A 2833 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=99.7943;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.66;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2866,294,0 chrXV 136235 . T A 3085 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=27.30;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3118,319,0 chrXV 136327 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5045;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=24.79;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3206,325,0 chrXV 136512 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=5.330;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.747;QD=25.34;ReadPosRankSum=1.702;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2998,312,0 chrXV 137115 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.2399;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.49;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5907,607,0 chrXV 137304 . G T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4994,511,0 chrXV 137682 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.10;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4089,432,0 chrXV 137942 . G T 1368 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1401,150,0 chrXV 138302 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.63;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3572,370,0 chrXV 138746 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=4.270;HaplotypeScore=6.0286;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.984;QD=22.32;ReadPosRankSum=1.682;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3158,333,0 chrXV 138754 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2305;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.51;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3184,327,0 chrXV 138839 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.208;QD=22.52;ReadPosRankSum=1.686;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3400,366,0 chrXV 138847 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.570;QD=21.48;ReadPosRankSum=1.710;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3329,351,0 chrXV 139001 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=3.464;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.859;QD=23.33;ReadPosRankSum=1.706;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3136,324,0 chrXV 139013 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.24;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2688,279,0 chrXV 139015 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.28;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2651,279,0 chrXV 139359 . T G 3196 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3229,339,0 chrXV 139408 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0760;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.341;QD=24.34;ReadPosRankSum=1.656;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3359,357,0 chrXV 139908 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=129;Dels=0.00;FS=3.600;HaplotypeScore=10.0317;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.990;QD=23.74;ReadPosRankSum=1.705;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:3096,321,0 chrXV 140012 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=143;Dels=0.00;FS=2.602;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.601;QD=25.47;ReadPosRankSum=2.398;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3642,390,0 chrXV 140220 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.37;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3435,369,0 chrXV 140557 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.59;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2772,280,0 chrXV 140619 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2757,285,0 chrXV 140746 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4583;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.45;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2328,240,0 chrXV 140760 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.366;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.109;QD=20.30;ReadPosRankSum=1.654;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1860,201,0 chrXV 141126 . A G 3157 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.26;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3190,336,0 chrXV 141147 . T A 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.93;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2487,261,0 chrXV 141207 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.28;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3244,331,0 chrXV 141631 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.55;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2874,294,0 chrXV 141731 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.779;QD=25.27;ReadPosRankSum=1.709;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3790,394,0 chrXV 142001 . C T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4735,487,0 chrXV 142608 . C A 2251 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.64;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2284,234,0 chrXV 142614 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.98;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2031,210,0 chrXV 142645 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.40;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2351,252,0 chrXV 142732 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3243,351,0 chrXV 142835 . C G 4815.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=25.61;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4815,508,0 chrXV 143022 . A G 4730.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.52;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4730,507,0 chrXV 143047 . A T 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=3.009;HaplotypeScore=6.8283;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.918;QD=21.88;ReadPosRankSum=2.384;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4070,418,0 chrXV 143072 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0880;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.91;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3742,396,0 chrXV 143229 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.05;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3559,367,0 chrXV 143401 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=8.806;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-1.496;QD=19.59;ReadPosRankSum=2.291;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3330,351,0 chrXV 143405 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.56;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2966,321,0 chrXV 143597 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=25.76;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4817,487,0 chrXV 143696 . G A 4893.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.97;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4893,502,0 chrXV 143727 . G T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=24.42;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4958,528,0 chrXV 143755 . G A 4872.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=24.98;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4872,508,0 chrXV 143787 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=24.85;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4200,444,0 chrXV 143811 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=25.29;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4123,427,0 chrXV 143876 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=3.033;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-0.076;QD=23.13;ReadPosRankSum=2.416;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3377,363,0 chrXV 143890 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=22.20;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3097,333,0 chrXV 143915 . A G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.981;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-1.150;QD=20.73;ReadPosRankSum=2.390;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2583,276,0 chrXV 143927 . G T 2203 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=19.67;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2236,231,0 chrXV 143959 . G T 2197 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=17.16;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2230,231,0 chrXV 143977 . T C 2061 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=15.61;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2094,225,0 chrXV 143987 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=16.05;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2071,216,0 chrXV 143989 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=14.91;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1942,213,0 chrXV 144008 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=1.723;QD=15.61;ReadPosRankSum=2.346;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2250,240,0 chrXV 144117 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.02;FS=0.000;HaplotypeScore=17.4291;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.79;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3221,334,0 chrXV 144215 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8698;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.85;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3959,429,0 chrXV 144354 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.2279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4776,487,0 chrXV 144655 . C T 5163.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.4046;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.19;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5163,535,0 chrXV 144887 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3908;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.99;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3379,352,0 chrXV 145028 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.95;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1646,177,0 chrXV 145140 . T C 359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.000;QD=16.32;ReadPosRankSum=1.576;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:42:392,42,0 chrXV 145302 . T G 1819 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.32;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1852,195,0 chrXV 145310 . C A 1895 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.83;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1928,207,0 chrXV 145331 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.23;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1944,213,0 chrXV 145519 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.497;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.709;QD=22.98;ReadPosRankSum=1.706;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3066,327,0 chrXV 145551 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.37;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3338,340,0 chrXV 146203 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=25.65;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2931,297,0 chrXV 146225 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.90;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2025,207,0 chrXV 146231 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.617;QD=20.23;ReadPosRankSum=1.694;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1854,195,0 chrXV 146368 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.43;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2189,228,0 chrXV 146472 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=25.40;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2294,237,0 chrXV 146551 . T A 2044 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.55;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2077,210,0 chrXV 146599 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.13;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2022,213,0 chrXV 146782 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=5.031;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.249;QD=25.34;ReadPosRankSum=1.692;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2212,234,0 chrXV 147007 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2280,231,0 chrXV 147162 . G A 955 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=20.32;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:988,105,0 chrXV 147274 . T A 666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.998;QD=20.18;ReadPosRankSum=1.628;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:72:699,72,0 chrXV 147540 . G T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=26.06;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4638,478,0 chrXV 147582 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.56;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3881,397,0 chrXV 147591 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.69;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3630,378,0 chrXV 147687 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.87;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4328,457,0 chrXV 147729 . A T 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=195;Dels=0.00;FS=5.764;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.150;QD=20.35;ReadPosRankSum=2.902;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3969,423,0 chrXV 147735 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.45;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4225,442,0 chrXV 147750 . C T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.23;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3864,411,0 chrXV 147783 . T C 4146.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.37;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4146,447,0 chrXV 147840 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=174;Dels=0.00;FS=3.035;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.544;QD=24.26;ReadPosRankSum=2.393;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4221,442,0 chrXV 147891 . A C 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=149;Dels=0.00;FS=8.788;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.744;QD=25.59;ReadPosRankSum=3.400;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3813,405,0 chrXV 147981 . G A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.43;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4569,481,0 chrXV 148159 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.49;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3968,417,0 chrXV 148176 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.86;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,405,0 chrXV 148362 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.31;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3468,358,0 chrXV 148695 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=24.08;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3043,315,0 chrXV 148704 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.56;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2663,285,0 chrXV 148719 . C G 2305 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.53;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2338,246,0 chrXV 148734 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.95;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2507,258,0 chrXV 148894 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=186;Dels=0.00;FS=8.187;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.087;QD=25.42;ReadPosRankSum=2.423;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4729,508,0 chrXV 148926 . T A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=25.36;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4133,444,0 chrXV 149046 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4135,415,0 chrXV 149214 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4171,441,0 chrXV 149247 . G C 4594.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4594,484,0 chrXV 149394 . T C 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=3.637;HaplotypeScore=9.0073;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.543;QD=22.71;ReadPosRankSum=1.680;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4610,495,0 chrXV 149706 . A T 5176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=215;Dels=0.00;FS=6.374;HaplotypeScore=12.7221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.428;QD=24.07;ReadPosRankSum=2.358;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5176,532,0 chrXV 150111 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2969,312,0 chrXV 150390 . G C 2042 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.74;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2075,222,0 chrXV 150503 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.72;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2049,222,0 chrXV 150543 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.93;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1803,183,0 chrXV 150554 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5572;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.12;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1836,195,0 chrXV 150653 . T C 3066 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.53;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:3099,330,0 chrXV 150803 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.87;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4178,433,0 chrXV 150859 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.39;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3747,390,0 chrXV 150962 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.74;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4526,486,0 chrXV 151148 . C A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.67;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3832,408,0 chrXV 151176 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.829;QD=21.09;ReadPosRankSum=1.711;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3501,366,0 chrXV 151183 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=165;Dels=0.00;FS=6.544;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.304;QD=19.85;ReadPosRankSum=2.359;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3275,345,0 chrXV 151251 . T A 3078 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.80;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3111,321,0 chrXV 151265 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=146;Dels=0.00;FS=8.577;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=1.225;QD=20.94;ReadPosRankSum=3.398;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3090,330,0 chrXV 151304 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.61;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3298,337,0 chrXV 151369 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=24.37;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3314,345,0 chrXV 151709 . A T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.285;QD=25.30;ReadPosRankSum=1.658;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2386,258,0 chrXV 151907 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.53;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2894,306,0 chrXV 151910 . T A 2732 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.51;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2765,297,0 chrXV 151997 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.57;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2791,285,0 chrXV 152141 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=25.35;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3371,351,0 chrXV 152215 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.7849;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=25.37;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3527,378,0 chrXV 152407 . T G 2134 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.46;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2167,231,0 chrXV 152424 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.43;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1962,207,0 chrXV 152922 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2887,294,0 chrXV 153116 . A G 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=191;Dels=0.00;FS=8.634;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.752;QD=24.13;ReadPosRankSum=2.424;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4608,493,0 chrXV 153180 . T G 5278.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.15;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5278,568,0 chrXV 153262 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.26;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4558,478,0 chrXV 153279 . A T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.91;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4604,478,0 chrXV 153317 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.305;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.805;QD=21.23;ReadPosRankSum=1.572;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:2,219:224:99:4756,492,0 chrXV 153513 . G C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3560;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.14;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3355,354,0 chrXV 153615 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.088;QD=24.81;ReadPosRankSum=1.703;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2960,306,0 chrXV 153722 . A C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=125;Dels=0.00;FS=3.859;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.084;QD=22.98;ReadPosRankSum=1.676;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2906,312,0 chrXV 153761 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=9.192;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.278;QD=22.57;ReadPosRankSum=2.399;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3295,351,0 chrXV 153775 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.49;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3127,339,0 chrXV 154056 . T C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.286;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.546;QD=22.18;ReadPosRankSum=1.679;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2938,303,0 chrXV 154073 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.10;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2967,303,0 chrXV 154160 . C G 2975 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=23.24;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3008,321,0 chrXV 154165 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.461;QD=23.82;ReadPosRankSum=1.651;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3082,324,0 chrXV 154180 . T C 2823 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.40;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2856,297,0 chrXV 154206 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.58;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2855,297,0 chrXV 154310 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=3.006;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.166;QD=24.25;ReadPosRankSum=2.305;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4147,441,0 chrXV 154799 . T G 2445 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.83;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2478,270,0 chrXV 154898 . A G 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=20.22;ReadPosRankSum=2.829;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:3,38:41:90:862,90,0 chrXV 154995 . A T 608 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:641,72,0 chrXV 155098 . C A 441 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.94;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:48:474,48,0 chrXV 155221 . G A 926 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.59;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:959,102,0 chrXV 155276 . A T 1572 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.35;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1605,168,0 chrXV 155779 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.56;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4495,466,0 chrXV 155997 . C A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.72;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4499,466,0 chrXV 156059 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.275;QD=23.27;ReadPosRankSum=1.667;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3723,399,0 chrXV 156082 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.408;QD=23.58;ReadPosRankSum=1.710;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3725,396,0 chrXV 156178 . G A 4900.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.14;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4900,517,0 chrXV 156337 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.63;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4254,459,0 chrXV 156508 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.351;QD=24.44;ReadPosRankSum=1.710;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3861,417,0 chrXV 156746 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2878,306,0 chrXV 156784 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3276,351,0 chrXV 156847 . T C 2352 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2385,267,0 chrXV 156898 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2448,252,0 chrXV 156979 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.07;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2189,234,0 chrXV 157101 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.82;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3105,313,0 chrXV 157207 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=4.527;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.511;QD=24.16;ReadPosRankSum=1.672;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4180,450,0 chrXV 157219 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.93;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4128,435,0 chrXV 158074 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.80;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4290,454,0 chrXV 158239 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=6.692;HaplotypeScore=19.1090;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.439;QD=23.61;ReadPosRankSum=2.391;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:5005,532,0 chrXV 158453 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.968;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.361;QD=23.68;ReadPosRankSum=1.714;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4452,463,0 chrXV 158575 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.23;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4213,436,0 chrXV 158650 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=3.227;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.267;QD=23.35;ReadPosRankSum=1.669;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3852,408,0 chrXV 158717 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=10.8615;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.58;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4067,424,0 chrXV 158754 . A C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.33;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3747,396,0 chrXV 158776 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.363;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.247;QD=23.61;ReadPosRankSum=1.710;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3660,396,0 chrXV 158838 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.02;FS=0.000;HaplotypeScore=41.4638;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.203;QD=23.24;ReadPosRankSum=0.096;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3439,363,0 chrXV 158905 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.62;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3160,319,0 chrXV 158969 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.82;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1803,192,0 chrXV 159062 . G T 1465 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.03;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1498,156,0 chrXV 159066 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=16.61;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1412,144,0 chrXV 159092 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.56;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1789,189,0 chrXV 159369 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.20;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2919,297,0 chrXV 159655 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4695,484,0 chrXV 159827 . A G 7296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=327;Dels=0.00;FS=3.023;HaplotypeScore=10.8056;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.114;QD=22.31;ReadPosRankSum=2.352;SB=-4.202e+03 GT:AD:DP:GQ:PL 1/1:2,325:327:99:7296,793,0 chrXV 160139 . G A 3133 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8238;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=14.57;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3166,363,0 chrXV 160141 . T C 2604 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.144;DP=203;Dels=0.00;FS=7.178;HaplotypeScore=4.8238;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;MQRankSum=-1.878;QD=12.83;ReadPosRankSum=3.125;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:6,195:203:99:2637,323,0 chrXV 160142 . G T 2559 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.447;DP=199;Dels=0.00;FS=1.691;HaplotypeScore=3.3011;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;MQRankSum=-0.692;QD=12.86;ReadPosRankSum=3.651;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:7,192:199:99:2592,317,0 chrXV 160153 . G C 2312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=4;QD=12.04;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2345,275,0 chrXV 160154 . G A 2271 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=4;QD=12.02;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2304,269,0 chrXV 160163 . G A 1787 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.0756;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=15;QD=8.35;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,211:214:99:1820,218,0 chrXV 160213 . G C 7565.01 filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=30.9954;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=15;QD=17.88;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,421:423:99:7565,805,0 chrXV 160403 . G A 11222.01 filter AC=2;AF=1.00;AN=2;DP=515;Dels=0.00;FS=0.000;HaplotypeScore=13.9083;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=19;QD=21.79;SB=-5.657e+03 GT:AD:DP:GQ:PL 1/1:0,515:515:99:11222,1169,0 chrXV 160549 . G T 489.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.126;DP=332;Dels=0.00;FS=72.024;HaplotypeScore=27.4397;MLEAC=1;MLEAF=0.500;MQ=47.76;MQ0=0;MQRankSum=-9.543;QD=1.47;ReadPosRankSum=1.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,61:332:99:519,0,5145 chrXV 160553 . T C 464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.749;DP=321;Dels=0.00;FS=66.954;HaplotypeScore=25.0736;MLEAC=1;MLEAF=0.500;MQ=48.30;MQ0=0;MQRankSum=-9.608;QD=1.45;ReadPosRankSum=3.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:261,56:321:99:494,0,5292 chrXV 160567 . C T 282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.722;DP=284;Dels=0.00;FS=38.597;HaplotypeScore=25.6435;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=0;MQRankSum=-9.226;QD=0.99;ReadPosRankSum=4.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,45:284:99:312,0,4645 chrXV 160568 . A G 252.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.484;DP=279;Dels=0.00;FS=55.027;HaplotypeScore=24.8548;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-9.789;QD=0.90;ReadPosRankSum=5.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,43:279:99:282,0,4978 chrXV 160569 . C G 246.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.015;DP=282;Dels=0.00;FS=57.689;HaplotypeScore=27.2208;MLEAC=1;MLEAF=0.500;MQ=51.54;MQ0=0;MQRankSum=-9.808;QD=0.87;ReadPosRankSum=4.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,43:282:99:276,0,4900 chrXV 160586 . G A 255.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DP=251;Dels=0.00;FS=50.613;HaplotypeScore=17.3099;MLEAC=1;MLEAF=0.500;MQ=54.00;MQ0=0;MQRankSum=-9.298;QD=1.02;ReadPosRankSum=-1.856;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,40:251:99:285,0,4304 chrXV 160688 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5656;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.96;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4049,409,0 chrXV 161134 . T A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.0489;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.15;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4250,433,0 chrXV 161464 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.18;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4740,502,0 chrXV 161509 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.687;QD=24.44;ReadPosRankSum=2.353;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4986,532,0 chrXV 161768 . T G 5317.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.9089;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.70;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5317,576,0 chrXV 161853 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.566;QD=20.48;ReadPosRankSum=1.649;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2614,288,0 chrXV 161975 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=3.034;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.711;QD=21.91;ReadPosRankSum=2.394;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3921,417,0 chrXV 161986 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.98;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3546,370,0 chrXV 162027 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.72;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2673,273,0 chrXV 162043 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.929;HaplotypeScore=3.5720;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-1.951;QD=14.77;ReadPosRankSum=2.381;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2160,228,0 chrXV 162065 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=16.07;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2203,228,0 chrXV 162197 . G T 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.150;QD=23.71;ReadPosRankSum=0.093;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3163,325,0 chrXV 162352 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.600;QD=24.44;ReadPosRankSum=2.421;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:4204,447,0 chrXV 162379 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.38;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4208,433,0 chrXV 162419 . G C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8001;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.25;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3421,363,0 chrXV 162766 . C T 6641.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=37.7699;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.47;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6641,709,0 chrXV 163253 . T C 5352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=222;Dels=0.00;FS=12.426;HaplotypeScore=20.8062;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.995;QD=24.11;ReadPosRankSum=2.968;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:5352,568,0 chrXV 163510 . T C 5532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=21.7548;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.939;QD=23.24;ReadPosRankSum=1.673;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,235:238:99:5532,600,0 chrXV 163567 . G A 6925.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=16.5036;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.73;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6925,742,0 chrXV 163690 . C T 7804.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.16;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7804,826,0 chrXV 163702 . T C 7694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=347;Dels=0.00;FS=2.962;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;MQRankSum=1.552;QD=22.17;ReadPosRankSum=1.227;SB=-4.278e+03 GT:AD:DP:GQ:PL 1/1:2,345:347:99:7694,802,0 chrXV 163748 . G A 7918.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=11.3954;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=23.15;SB=-3.952e+03 GT:AD:DP:GQ:PL 1/1:0,342:342:99:7918,820,0 chrXV 163776 . C G 7732.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.08;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:0,328:335:99:7732,814,0 chrXV 163799 . G A 7309.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=4.8885;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.35;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:7309,760,0 chrXV 163912 . A T 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=27.1353;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.708;QD=19.09;ReadPosRankSum=1.719;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:5231,547,0 chrXV 163943 . A C 4695.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.1727;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.59;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4695,490,0 chrXV 163945 . A G 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.1727;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.083;QD=20.49;ReadPosRankSum=1.702;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4693,496,0 chrXV 164284 . T A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.44;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4130,450,0 chrXV 164491 . G A 5622.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.8468;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.34;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5622,583,0 chrXV 164632 . C T 5532.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.26;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5532,565,0 chrXV 164683 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.76;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4802,490,0 chrXV 164708 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=196;Dels=0.00;FS=3.003;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.361;QD=20.64;ReadPosRankSum=2.399;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4045,427,0 chrXV 164737 . T A 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.875;QD=21.89;ReadPosRankSum=1.659;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4159,436,0 chrXV 164935 . T C 4934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=3.553;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.098;QD=23.06;ReadPosRankSum=1.716;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4934,534,0 chrXV 164993 . T G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.21;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4642,499,0 chrXV 165025 . A G 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=212;Dels=0.00;FS=3.379;HaplotypeScore=19.5575;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.704;QD=24.15;ReadPosRankSum=1.715;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:5119,544,0 chrXV 165055 . T A 5624.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.53;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5624,589,0 chrXV 165133 . T C 5100.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8342;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.29;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5100,532,0 chrXV 165232 . T C 5340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=220;Dels=0.00;FS=8.500;HaplotypeScore=10.4498;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=2.137;QD=24.27;ReadPosRankSum=2.427;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5340,576,0 chrXV 165358 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.316;HaplotypeScore=10.3993;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.135;QD=23.10;ReadPosRankSum=1.597;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3580,373,0 chrXV 165453 . A G 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;MQRankSum=-1.625;QD=17.36;ReadPosRankSum=1.696;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1717,183,0 chrXV 165456 . A G 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=-0.938;QD=17.43;ReadPosRankSum=1.696;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1706,180,0 chrXV 165488 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=17.20;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1891,198,0 chrXV 165497 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=0.045;QD=16.80;ReadPosRankSum=1.702;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1965,207,0 chrXV 165557 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.26;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2265,234,0 chrXV 165639 . A G 2537 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.71;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2570,273,0 chrXV 165707 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=24.53;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2511,264,0 chrXV 165725 . G C 2699 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=23.27;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2732,291,0 chrXV 165776 . T G 2809 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.21;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2842,309,0 chrXV 165827 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=24.86;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2743,288,0 chrXV 165912 . A G 2406 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.48;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2439,264,0 chrXV 165915 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=21.93;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2555,270,0 chrXV 165923 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=20.73;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2272,234,0 chrXV 165953 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=15.25;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1726,180,0 chrXV 165998 . A G 1565 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=-1.344;QD=14.63;ReadPosRankSum=1.700;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1598,171,0 chrXV 166007 . A G 1476 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;MQRankSum=-1.335;QD=15.37;ReadPosRankSum=1.696;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1509,162,0 chrXV 166008 . A G 1488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=3.033;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;MQRankSum=-1.542;QD=15.66;ReadPosRankSum=2.398;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1521,162,0 chrXV 166009 . A C 1490 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=16.02;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1523,162,0 chrXV 166055 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=17.80;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2151,234,0 chrXV 166076 . A G 2137 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=16.31;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2170,231,0 chrXV 166088 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.03;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2021,219,0 chrXV 166163 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=24.34;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2589,264,0 chrXV 166172 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=22.58;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2539,270,0 chrXV 166324 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.31;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2950,303,0 chrXV 166482 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3006,321,0 chrXV 166700 . A T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.9455;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.19;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3749,405,0 chrXV 166939 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=21.13;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2357,246,0 chrXV 166940 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=21.38;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2363,246,0 chrXV 166989 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.08;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1922,198,0 chrXV 167021 . A T 1729 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=17.64;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1762,180,0 chrXV 167078 . A T 1699 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=16.18;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1732,171,0 chrXV 167081 . T G 1658 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=15.50;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1691,183,0 chrXV 167102 . T C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-1.026;QD=14.76;ReadPosRankSum=1.698;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1553,165,0 chrXV 167109 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=13.57;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1431,153,0 chrXV 167129 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=14.00;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1489,156,0 chrXV 167270 . A T 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=147;Dels=0.00;FS=8.487;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.006;QD=25.01;ReadPosRankSum=3.375;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3676,373,0 chrXV 167344 . T A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=25.28;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4045,421,0 chrXV 167483 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=24.54;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3174,327,0 chrXV 167627 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=20.81;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2822,294,0 chrXV 167650 . T C 2379 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=4.248;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;MQRankSum=1.261;QD=18.88;ReadPosRankSum=1.704;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2412,255,0 chrXV 167656 . A G 2086 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.729;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;MQRankSum=-2.167;QD=18.46;ReadPosRankSum=2.406;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2119,228,0 chrXV 167658 . T C 1931 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.464;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;MQRankSum=-1.732;QD=17.72;ReadPosRankSum=1.700;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1964,219,0 chrXV 167659 . A G 2013 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=18.47;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2046,222,0 chrXV 167688 . A T 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.940;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;MQRankSum=1.015;QD=17.36;ReadPosRankSum=2.396;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1613,168,0 chrXV 167717 . A C 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=4.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;MQRankSum=1.299;QD=16.02;ReadPosRankSum=1.660;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:84:802,84,0 chrXV 167735 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=21.40;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:889,93,0 chrXV 167761 . A G 1021 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.84;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1054,114,0 chrXV 167794 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=23.07;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1694,177,0 chrXV 167815 . C G 1771 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=21.86;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1804,195,0 chrXV 167840 . G C 2035 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=21.88;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2068,225,0 chrXV 167922 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=18.53;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1423,150,0 chrXV 167933 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.22;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1436,150,0 chrXV 167975 . C T 1608 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=17.87;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1641,171,0 chrXV 167980 . G C 1469 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.14;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1502,162,0 chrXV 167983 . T C 1524 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=17.12;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1557,171,0 chrXV 168074 . A G 2571 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.46;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2604,267,0 chrXV 168199 . G A 2803 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=22.79;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2836,318,0 chrXV 168202 . T C 2911 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=23.10;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2944,318,0 chrXV 168209 . G A 3119 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=24.95;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3152,327,0 chrXV 168263 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.742;QD=24.46;ReadPosRankSum=1.703;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2968,312,0 chrXV 168294 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.039;QD=25.47;ReadPosRankSum=1.703;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3090,333,0 chrXV 168347 . C G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=24.78;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3792,414,0 chrXV 168382 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=22.26;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3562,378,0 chrXV 168383 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=4.048;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.996;QD=22.59;ReadPosRankSum=1.689;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3615,381,0 chrXV 168404 . A C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=3.928;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.536;QD=18.24;ReadPosRankSum=1.650;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3116,336,0 chrXV 168429 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=17.63;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3259,354,0 chrXV 168445 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=194;Dels=0.00;FS=5.506;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-0.425;QD=18.62;ReadPosRankSum=2.943;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3612,376,0 chrXV 168455 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=8.527;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.033;QD=19.07;ReadPosRankSum=2.423;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:3604,378,0 chrXV 168532 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=3.030;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.157;QD=25.27;ReadPosRankSum=2.422;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4549,481,0 chrXV 168558 . G T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=26.38;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5249,547,0 chrXV 168592 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.38;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5097,544,0 chrXV 168708 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.6677;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.02;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4924,520,0 chrXV 168744 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=3.334;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.220;QD=23.13;ReadPosRankSum=1.636;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4209,456,0 chrXV 168885 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.16;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3720,388,0 chrXV 169152 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.22;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4069,432,0 chrXV 169251 . T C 5536.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.94;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5536,589,0 chrXV 169333 . T C 4458.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.91;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4458,463,0 chrXV 169359 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.1117;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.81;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4392,445,0 chrXV 169572 . C T 5032.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.41;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5032,517,0 chrXV 169704 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3739,405,0 chrXV 169869 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9064;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.51;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1856,189,0 chrXV 170103 . T C 1973 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.521;QD=19.93;ReadPosRankSum=2.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2006,219,0 chrXV 170107 . C T 2080 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2113,219,0 chrXV 170126 . C T 2446 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2479,258,0 chrXV 170199 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.53;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2637,291,0 chrXV 170344 . C T 6272.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.85;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,258:263:99:6272,640,0 chrXV 170368 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.1886;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.847;QD=21.38;ReadPosRankSum=1.656;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:4895,520,0 chrXV 170583 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.27;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4030,429,0 chrXV 170671 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.84;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3247,351,0 chrXV 170682 . T A 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=4.021;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.207;QD=19.63;ReadPosRankSum=1.710;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3154,322,0 chrXV 170746 . A T 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.193;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.546;QD=22.89;ReadPosRankSum=1.637;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3342,357,0 chrXV 170921 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.82;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3971,418,0 chrXV 170927 . A C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=4.194;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.728;QD=21.69;ReadPosRankSum=1.693;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3883,409,0 chrXV 170944 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.67;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4149,421,0 chrXV 171150 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=211;Dels=0.00;FS=9.155;HaplotypeScore=23.0394;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.187;QD=21.45;ReadPosRankSum=3.344;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:4526,478,0 chrXV 171213 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.43;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5423,553,0 chrXV 171288 . T C 4958.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.04;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4958,534,0 chrXV 171306 . C T 5013.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.79;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5013,502,0 chrXV 171511 . A C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=193;Dels=0.00;FS=2.788;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-1.030;QD=18.93;ReadPosRankSum=2.373;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3653,393,0 chrXV 171515 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.68;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3698,379,0 chrXV 171671 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=22.0713;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.333;QD=20.91;ReadPosRankSum=1.665;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3324,354,0 chrXV 171745 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.71;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3872,394,0 chrXV 171973 . T C 3111 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.47;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3144,333,0 chrXV 171981 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.63;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3039,318,0 chrXV 171985 . C G 3066 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.90;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3099,321,0 chrXV 172102 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.84;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4496,460,0 chrXV 172468 . A G 5867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.523;DP=263;Dels=0.00;FS=20.976;HaplotypeScore=19.8122;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.282;QD=22.31;ReadPosRankSum=4.774;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:8,254:263:99:5867,622,0 chrXV 172515 . T C 5907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.0195;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.719;QD=22.55;ReadPosRankSum=1.719;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:1,257:262:99:5907,634,0 chrXV 172581 . T C 5415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=239;Dels=0.00;FS=3.029;HaplotypeScore=12.8870;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.428;QD=22.66;ReadPosRankSum=2.388;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:5415,577,0 chrXV 172704 . C A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=20.5955;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.19;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4767,490,0 chrXV 172752 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.33;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4147,433,0 chrXV 172768 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.17;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4316,459,0 chrXV 172825 . C T 5564.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.28;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5564,574,0 chrXV 172956 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6361;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.149;QD=23.45;ReadPosRankSum=2.472;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:3986,429,0 chrXV 173022 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.906;QD=24.70;ReadPosRankSum=1.712;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4273,459,0 chrXV 173080 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.38;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3577,378,0 chrXV 173105 . A T 2840 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.19;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2873,294,0 chrXV 173112 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.85;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2723,282,0 chrXV 173127 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.247;QD=19.32;ReadPosRankSum=1.705;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2467,267,0 chrXV 173169 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.969;QD=18.06;ReadPosRankSum=1.700;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2002,216,0 chrXV 173202 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.15;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2742,285,0 chrXV 173340 . A C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.309;DP=113;Dels=0.00;FS=3.680;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.175;QD=23.33;ReadPosRankSum=-0.804;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2669,260,0 chrXV 173391 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.451;QD=23.71;ReadPosRankSum=1.701;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2689,285,0 chrXV 173814 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.05;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3780,402,0 chrXV 173829 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.43;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3771,399,0 chrXV 174019 . A T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.93;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4380,454,0 chrXV 174201 . A G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6053;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.682;QD=23.56;ReadPosRankSum=1.680;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3143,336,0 chrXV 174364 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2265,231,0 chrXV 174465 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.27;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3040,307,0 chrXV 174472 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.29;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3056,315,0 chrXV 174675 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=22.21;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2543,273,0 chrXV 174678 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=23.09;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2481,270,0 chrXV 175135 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.885;QD=20.20;ReadPosRankSum=1.655;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1851,198,0 chrXV 175142 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.28;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1715,174,0 chrXV 176796 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3527,361,0 chrXV 177738 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3396,346,0 chrXV 178021 . C T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.5166;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.23;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4410,454,0 chrXV 178128 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.155;QD=24.97;ReadPosRankSum=1.692;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4345,460,0 chrXV 178180 . G T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.91;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3688,390,0 chrXV 178620 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=148;Dels=0.00;FS=3.790;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.119;QD=23.18;ReadPosRankSum=1.708;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3431,363,0 chrXV 178876 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.457;QD=21.25;ReadPosRankSum=1.684;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3136,336,0 chrXV 178888 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.59;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3343,343,0 chrXV 179942 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4188,421,0 chrXV 180210 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.54;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3729,385,0 chrXV 180534 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=106;Dels=0.00;FS=2.831;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.894;QD=20.27;ReadPosRankSum=2.171;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2182,228,0 chrXV 180685 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.43;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2892,294,0 chrXV 180906 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.127;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.432;QD=24.16;ReadPosRankSum=0.822;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3527,353,0 chrXV 181062 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.01;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3162,325,0 chrXV 181215 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.69;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3200,339,0 chrXV 181216 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.78;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3349,340,0 chrXV 181290 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.3154;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.73;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3318,337,0 chrXV 181345 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.28;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3690,379,0 chrXV 181450 . T A 2649 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.45;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2682,279,0 chrXV 181602 . C A 2150 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.87;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2183,234,0 chrXV 182170 . A T 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=3.242;HaplotypeScore=11.6639;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.215;QD=24.54;ReadPosRankSum=1.710;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3779,391,0 chrXV 182727 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.334;QD=22.24;ReadPosRankSum=1.709;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3314,348,0 chrXV 182737 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-1.594;QD=20.61;ReadPosRankSum=1.709;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3165,336,0 chrXV 182738 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=21.41;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3268,339,0 chrXV 182884 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.97;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3452,363,0 chrXV 182917 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=172;Dels=0.00;FS=2.662;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.070;QD=22.26;ReadPosRankSum=2.363;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3829,414,0 chrXV 182944 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=17.82;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2902,321,0 chrXV 182946 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=17.59;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2830,309,0 chrXV 182971 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=17.49;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2691,294,0 chrXV 183010 . A T 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.744;HaplotypeScore=13.4514;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=1.140;QD=19.80;ReadPosRankSum=1.688;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3162,336,0 chrXV 183184 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.03;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4490,475,0 chrXV 183196 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.78;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4638,478,0 chrXV 183244 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=7.131;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.098;QD=23.11;ReadPosRankSum=2.408;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5500,600,0 chrXV 183281 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.4401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5225,570,0 chrXV 183991 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.53;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3502,361,0 chrXV 184072 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.92;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3732,385,0 chrXV 184100 . G T 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8106;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.438;QD=24.20;ReadPosRankSum=0.271;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4018,415,0 chrXV 184291 . A C 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=167;Dels=0.00;FS=5.254;HaplotypeScore=10.9919;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.298;QD=24.43;ReadPosRankSum=3.407;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:4080,432,0 chrXV 184609 . T A 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=212;Dels=0.00;FS=3.012;HaplotypeScore=14.5841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.180;QD=23.53;ReadPosRankSum=2.380;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4988,540,0 chrXV 185473 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3853,397,0 chrXV 186481 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2585,276,0 chrXV 188225 . C A 2831 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2864,289,0 chrXV 188321 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.22;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2958,306,0 chrXV 188416 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.87;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2755,282,0 chrXV 188616 . A C 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.74;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2642,282,0 chrXV 188662 . A T 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6524;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.616;QD=23.38;ReadPosRankSum=1.675;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2862,294,0 chrXV 188683 . C G 2413 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.94;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2446,255,0 chrXV 188972 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.57;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2132,225,0 chrXV 189144 . T C 2684 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9277;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.40;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2717,291,0 chrXV 189241 . A G 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=96;Dels=0.00;FS=2.960;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.039;QD=22.47;ReadPosRankSum=2.371;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,92:96:99:2190,228,0 chrXV 189256 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.60;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2063,222,0 chrXV 189304 . A C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.443;QD=20.18;ReadPosRankSum=1.691;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1728,186,0 chrXV 191563 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1601,168,0 chrXV 193911 . C T 6793.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.6570;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.79;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6793,697,0 chrXV 194198 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.221;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.077;QD=23.14;ReadPosRankSum=1.685;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3425,375,0 chrXV 194515 . A G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=191;Dels=0.00;FS=3.672;HaplotypeScore=14.9899;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.261;QD=22.66;ReadPosRankSum=1.660;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4328,454,0 chrXV 194759 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4174,450,0 chrXV 194853 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.465;HaplotypeScore=14.9514;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.356;QD=22.20;ReadPosRankSum=1.709;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3352,354,0 chrXV 194959 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1594;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.15;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3773,385,0 chrXV 195072 . A C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.34;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4714,504,0 chrXV 195381 . A T 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.710;QD=23.86;ReadPosRankSum=1.713;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4367,454,0 chrXV 195644 . A C 5268.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.84;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5268,553,0 chrXV 196663 . G T 1995 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.62;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,112:120:99:2028,213,0 chrXV 197158 . A T 912 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:945,99,0 chrXV 197493 . C A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,177:184:99:4177,436,0 chrXV 199186 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.594;QD=24.86;ReadPosRankSum=1.483;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4699,485,0 chrXV 199783 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=115;Dels=0.00;FS=6.295;HaplotypeScore=7.5547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=2.297;QD=23.17;ReadPosRankSum=2.341;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2697,282,0 chrXV 201792 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.719;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.639;QD=24.39;ReadPosRankSum=1.713;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4560,478,0 chrXV 202012 . C T 6487.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.7975;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.14;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6487,676,0 chrXV 202087 . C T 6778.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.62;SB=-3.546e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6778,727,0 chrXV 202330 . C T 6055.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.76;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6055,625,0 chrXV 202368 . C T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.1313;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.68;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4899,520,0 chrXV 203046 . C G 6841.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=12.7343;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.06;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:6841,721,0 chrXV 203132 . C T 5827.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.01;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5827,595,0 chrXV 203233 . A G 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=225;Dels=0.00;FS=3.149;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.831;QD=23.87;ReadPosRankSum=1.717;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5370,574,0 chrXV 203947 . T C 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=23.47;ReadPosRankSum=1.715;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4812,505,0 chrXV 204530 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=13.25;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:709,75,0 chrXV 204903 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=25.57;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2897,303,0 chrXV 205095 . T A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.80;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3693,382,0 chrXV 205106 . T A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.04;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3438,352,0 chrXV 205126 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=3.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.809;QD=21.23;ReadPosRankSum=2.343;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3418,355,0 chrXV 205234 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=141;Dels=0.00;FS=6.109;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.164;QD=18.45;ReadPosRankSum=2.907;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2634,285,0 chrXV 205237 . T A 2648 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.05;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2681,273,0 chrXV 205475 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.577;QD=23.17;ReadPosRankSum=-0.691;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3568,354,0 chrXV 205496 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=24.85;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3852,400,0 chrXV 205541 . A T 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.48;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2697,279,0 chrXV 205574 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.03;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3460,358,0 chrXV 205723 . C G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.7211;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.23;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4192,439,0 chrXV 205739 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.66;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3920,423,0 chrXV 205799 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.21;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4317,442,0 chrXV 205904 . T A 1738 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.00;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1771,183,0 chrXV 205985 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=16.2528;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.53;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2638,276,0 chrXV 206166 . T A 5920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.390;QD=27.03;ReadPosRankSum=2.959;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:5920,595,0 chrXV 206259 . T A 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.035;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=1.074;QD=22.98;ReadPosRankSum=1.674;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4160,430,0 chrXV 206268 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.34;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4132,441,0 chrXV 206718 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=163;Dels=0.00;FS=5.286;HaplotypeScore=9.7993;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.522;QD=22.20;ReadPosRankSum=2.944;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3619,387,0 chrXV 206970 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=2.653;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.589;QD=22.54;ReadPosRankSum=2.421;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3810,411,0 chrXV 206985 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=8.361;HaplotypeScore=5.1497;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.807;QD=21.52;ReadPosRankSum=2.235;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3723,388,0 chrXV 207058 . T C 3066 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.53;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3099,324,0 chrXV 207397 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.5397;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.88;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4355,460,0 chrXV 207408 . C T 5223.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.9316;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.01;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5223,538,0 chrXV 208002 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.28;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3286,351,0 chrXV 208010 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.474;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.688;QD=20.07;ReadPosRankSum=1.688;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3204,345,0 chrXV 208100 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.4255;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.94;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3854,408,0 chrXV 208220 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.60;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3446,355,0 chrXV 208309 . T A 2903 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2936,300,0 chrXV 208421 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=109;Dels=0.00;FS=3.481;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.441;QD=21.91;ReadPosRankSum=1.700;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2421,258,0 chrXV 208452 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.58;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3130,324,0 chrXV 208517 . A C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.67;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3520,375,0 chrXV 208556 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=130;Dels=0.00;FS=8.389;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.314;QD=25.58;ReadPosRankSum=3.350;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:3325,345,0 chrXV 208643 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.57;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4423,457,0 chrXV 208678 . A G 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=7.237;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.007;QD=25.56;ReadPosRankSum=2.397;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4806,505,0 chrXV 208904 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0238;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.72;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4328,445,0 chrXV 208980 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=6.836;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.290;QD=24.04;ReadPosRankSum=2.379;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3365,366,0 chrXV 209102 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.12;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3492,369,0 chrXV 209157 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.272;QD=23.84;ReadPosRankSum=1.688;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3839,405,0 chrXV 209222 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.173;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.743;QD=24.84;ReadPosRankSum=2.398;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3577,375,0 chrXV 209254 . C A 2842 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.08;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2875,309,0 chrXV 209279 . T A 2390 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.14;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2423,249,0 chrXV 209318 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.108;QD=22.70;ReadPosRankSum=1.701;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2575,282,0 chrXV 209383 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2513,270,0 chrXV 209483 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.69;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2897,306,0 chrXV 209501 . A T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.84;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3478,360,0 chrXV 209582 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.035;QD=25.63;ReadPosRankSum=2.896;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3742,411,0 chrXV 209698 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.05;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4634,490,0 chrXV 209762 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.10;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4672,481,0 chrXV 209867 . T G 3872.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.19;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3872,409,0 chrXV 209903 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=162;Dels=0.00;FS=6.903;HaplotypeScore=18.4264;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.702;QD=23.40;ReadPosRankSum=2.389;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3790,408,0 chrXV 209963 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.47;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2738,276,0 chrXV 209967 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-1.617;QD=21.68;ReadPosRankSum=1.646;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2656,276,0 chrXV 210056 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.99;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3205,336,0 chrXV 210115 . T C 2780 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=2.907;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.280;QD=20.29;ReadPosRankSum=2.377;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2813,294,0 chrXV 210116 . T C 2656 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=137;Dels=0.00;FS=2.884;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.461;QD=19.39;ReadPosRankSum=2.413;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2689,291,0 chrXV 210122 . A G 2445 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=4.093;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-0.866;QD=17.98;ReadPosRankSum=1.630;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2478,273,0 chrXV 210619 . G A 4701.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.83;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4701,490,0 chrXV 210811 . G A 6780.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.3623;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.58;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6780,697,0 chrXV 210847 . T C 6283.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.36;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6283,676,0 chrXV 210877 . T C 5316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=4.054;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.281;QD=22.62;ReadPosRankSum=1.702;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5316,562,0 chrXV 211015 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.1994;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.55;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5208,538,0 chrXV 211081 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=230;Dels=0.00;FS=3.243;HaplotypeScore=15.6919;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.572;QD=23.17;ReadPosRankSum=1.717;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5330,576,0 chrXV 211164 . C G 5722.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.8436;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.07;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5722,616,0 chrXV 211180 . C T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.6850;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.56;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5436,556,0 chrXV 211399 . A T 5796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.7507;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.134;QD=25.65;ReadPosRankSum=1.686;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5796,601,0 chrXV 211444 . A G 5192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.666;QD=24.49;ReadPosRankSum=1.716;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5192,547,0 chrXV 212114 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.87;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3954,412,0 chrXV 212282 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3848,400,0 chrXV 212813 . T C 4938.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4938,514,0 chrXV 212987 . C T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.49;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4295,436,0 chrXV 213206 . G C 4796.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.00;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4796,519,0 chrXV 213212 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=4.285;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.881;QD=20.48;ReadPosRankSum=1.717;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4670,510,0 chrXV 213233 . A T 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=246;Dels=0.00;FS=7.587;HaplotypeScore=5.7414;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.212;QD=21.30;ReadPosRankSum=2.400;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5240,538,0 chrXV 213488 . T C 6008.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.84;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6008,631,0 chrXV 213775 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.62;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2445,252,0 chrXV 213834 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=2.717;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.656;QD=20.20;ReadPosRankSum=2.396;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1912,207,0 chrXV 213883 . A T 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;DP=88;Dels=0.00;FS=1.071;HaplotypeScore=66.0598;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=2.269;QD=0.81;ReadPosRankSum=-2.048;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:66,22:88:99:101,0,174 chrXV 213920 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.67;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1873,198,0 chrXV 213976 . G T 2566 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.67;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2599,267,0 chrXV 214077 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.24;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3170,322,0 chrXV 214472 . C T 5470.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.2021;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.42;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5470,577,0 chrXV 214604 . G A 5754.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.7782;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.35;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5754,586,0 chrXV 214699 . A G 6605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=270;Dels=0.00;FS=17.569;HaplotypeScore=15.1269;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.085;QD=24.46;ReadPosRankSum=3.803;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:5,262:270:99:6605,709,0 chrXV 214734 . G A 5690.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.81;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5690,615,0 chrXV 215175 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.4046;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5193,541,0 chrXV 215715 . C T 5167.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5167,547,0 chrXV 215865 . G A 5457.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.3495;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.15;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5457,565,0 chrXV 216247 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=21.74;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2751,279,0 chrXV 216376 . A G 5186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.862;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.001;QD=25.42;ReadPosRankSum=0.444;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,198:204:99:5186,533,0 chrXV 216399 . C A 6122.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=26.50;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:6122,622,0 chrXV 216932 . T A 126.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=61.51;MQ0=0;MQRankSum=1.027;QD=3.17;ReadPosRankSum=1.592;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:3,37:40:4:156,0,4 chrXV 217113 . C G 2430 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2463,276,0 chrXV 217521 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.57;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4695,487,0 chrXV 218142 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.73;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5861,607,0 chrXV 218248 . T C 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=229;Dels=0.00;FS=4.008;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.324;QD=23.21;ReadPosRankSum=1.717;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5315,565,0 chrXV 218547 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1723,180,0 chrXV 219832 . T C 5885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=262;Dels=0.00;FS=10.404;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.450;QD=22.46;ReadPosRankSum=2.950;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:5885,625,0 chrXV 220341 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.58;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4740,490,0 chrXV 220880 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.80;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4128,421,0 chrXV 221062 . G C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.80;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3856,408,0 chrXV 221075 . G C 3956.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.55;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3956,420,0 chrXV 221859 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2329;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.408;QD=23.72;ReadPosRankSum=1.676;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2951,312,0 chrXV 222860 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.15;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3935,406,0 chrXV 222869 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=7.795;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.697;QD=21.06;ReadPosRankSum=2.421;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3601,384,0 chrXV 223392 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5540;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.20;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4108,427,0 chrXV 223663 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=194;Dels=0.00;FS=5.043;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.112;QD=22.72;ReadPosRankSum=3.415;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4408,480,0 chrXV 226812 . C G 2746 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.79;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2779,297,0 chrXV 228074 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.17;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1967,201,0 chrXV 228290 . A C 2078 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.16;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2111,225,0 chrXV 230105 . G T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.04;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3380,346,0 chrXV 233436 . C A 4873.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.77;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4873,520,0 chrXV 233724 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.89;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2485,255,0 chrXV 234020 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.217;QD=24.72;ReadPosRankSum=1.703;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:3098,324,0 chrXV 234113 . T A 3079 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3465;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.84;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3112,327,0 chrXV 234283 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=215;Dels=0.00;FS=11.547;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.407;QD=25.32;ReadPosRankSum=2.415;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5443,583,0 chrXV 234932 . A T 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=4.643;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.664;QD=23.77;ReadPosRankSum=1.594;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4777,505,0 chrXV 235233 . A C 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=222;Dels=0.00;FS=8.150;HaplotypeScore=20.1713;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=0.140;QD=22.46;ReadPosRankSum=2.405;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,217:222:99:4987,520,0 chrXV 235401 . G A 1772.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;DP=343;Dels=0.00;FS=0.395;HaplotypeScore=20.5891;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=1;MQRankSum=-4.784;QD=5.17;ReadPosRankSum=-11.426;SB=-1.453e+03 GT:AD:DP:GQ:PL 0/1:194,148:343:99:1802,0,1472 chrXV 235404 . G A 1592.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.164;DP=343;Dels=0.00;FS=0.398;HaplotypeScore=18.0959;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=1;MQRankSum=-6.911;QD=4.64;ReadPosRankSum=-12.866;SB=-1.319e+03 GT:AD:DP:GQ:PL 0/1:203,139:343:99:1622,0,1682 chrXV 235407 . G A 1471.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.577;DP=342;Dels=0.00;FS=1.828;HaplotypeScore=11.5502;MLEAC=1;MLEAF=0.500;MQ=44.58;MQ0=1;MQRankSum=-7.886;QD=4.30;ReadPosRankSum=-13.139;SB=-1.232e+03 GT:AD:DP:GQ:PL 0/1:210,132:342:99:1501,0,1841 chrXV 236223 . A G 721.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960;DP=488;Dels=0.00;FS=7.679;HaplotypeScore=296.0383;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=-12.997;QD=1.48;ReadPosRankSum=-10.291;SB=-1.021e+03 GT:AD:DP:GQ:PL 0/1:359,128:487:99:751,0,3144 chrXV 236226 . T A 909.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;DP=490;Dels=0.00;FS=11.707;HaplotypeScore=393.0646;MLEAC=1;MLEAF=0.500;MQ=44.52;MQ0=0;MQRankSum=-13.439;QD=1.86;ReadPosRankSum=-10.476;SB=-1.252e+03 GT:AD:DP:GQ:PL 0/1:346,143:489:99:939,0,2731 chrXV 236229 . A G 1959.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.129;DP=504;Dels=0.00;FS=0.000;HaplotypeScore=408.0977;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=0;MQRankSum=-8.784;QD=3.89;ReadPosRankSum=-14.627;SB=-1.473e+03 GT:AD:DP:GQ:PL 0/1:297,206:503:64:1989,0,64 chrXV 236232 . T A 462.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;DP=512;Dels=0.00;FS=36.732;HaplotypeScore=404.7314;MLEAC=1;MLEAF=0.500;MQ=43.48;MQ0=0;MQRankSum=6.106;QD=0.90;ReadPosRankSum=-7.543;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:481,31:512:99:492,0,1746 chrXV 236235 . G A 1297.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.975;DP=514;Dels=0.00;FS=13.403;HaplotypeScore=402.6258;MLEAC=1;MLEAF=0.500;MQ=43.55;MQ0=0;MQRankSum=-8.787;QD=2.52;ReadPosRankSum=4.117;SB=-2.574e+03 GT:AD:DP:GQ:PL 0/1:221,292:514:99:1327,0,3086 chrXV 236253 . A G 6840.01 filter AC=2;AF=1.00;AN=2;DP=554;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=12.35;SB=-6.388e+03 GT:AD:DP:GQ:PL 1/1:0,554:554:99:6840,724,0 chrXV 236274 . A G 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.283;DP=457;Dels=0.01;FS=27.009;HaplotypeScore=1016.6659;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=0;MQRankSum=0.150;QD=0.39;ReadPosRankSum=-8.798;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:356,98:454:99:207,0,2425 chrXV 236280 . G A 847 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.420;DP=433;Dels=0.00;FS=14.032;HaplotypeScore=330.7992;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;MQRankSum=-0.295;QD=1.96;ReadPosRankSum=-13.238;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:312,116:431:93:880,93,0 chrXV 236313 . A G 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.418;DP=419;Dels=0.00;FS=12.356;HaplotypeScore=21.7764;MLEAC=1;MLEAF=0.500;MQ=47.54;MQ0=0;MQRankSum=-6.196;QD=0.93;ReadPosRankSum=-11.694;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:309,109:419:99:421,0,3726 chrXV 236967 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;DP=213;Dels=0.00;FS=6.670;HaplotypeScore=10.7016;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=3.183;QD=8.53;ReadPosRankSum=7.681;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:57,156:213:52:1850,52,0 chrXV 236970 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8350;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;MQRankSum=1.312;QD=9.30;ReadPosRankSum=-0.756;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:1920,207,0 chrXV 236982 . A G 855.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.448;DP=216;Dels=0.00;FS=11.291;HaplotypeScore=257.1950;MLEAC=1;MLEAF=0.500;MQ=37.25;MQ0=0;MQRankSum=0.293;QD=3.96;ReadPosRankSum=-2.993;SB=-8.460e+02 GT:AD:DP:GQ:PL 0/1:114,101:215:83:885,0,83 chrXV 236985 . A G 469.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889;DP=215;Dels=0.00;FS=24.405;HaplotypeScore=346.9206;MLEAC=1;MLEAF=0.500;MQ=36.59;MQ0=0;MQRankSum=-0.084;QD=2.18;ReadPosRankSum=-0.437;SB=-4.730e+02 GT:AD:DP:GQ:PL 0/1:141,74:215:99:499,0,775 chrXV 237048 . T G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=227;Dels=0.00;FS=12.741;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.128;QD=16.48;ReadPosRankSum=2.951;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:3740,399,0 chrXV 237076 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.80;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4492,463,0 chrXV 238149 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1487,165,0 chrXV 238504 . C A 1840 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1873,189,0 chrXV 238753 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3981,429,0 chrXV 238924 . A C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=6.049;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.493;QD=25.94;ReadPosRankSum=2.417;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3994,423,0 chrXV 240094 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.26;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4001,418,0 chrXV 240239 . T A 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=3.027;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.611;QD=23.74;ReadPosRankSum=2.399;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4629,475,0 chrXV 240351 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3792;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.39;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3366,343,0 chrXV 241207 . T G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.823;QD=25.70;ReadPosRankSum=1.683;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3649,393,0 chrXV 241259 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.591;QD=24.52;ReadPosRankSum=1.591;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3604,384,0 chrXV 241728 . T C 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=11.5276;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.710;QD=21.27;ReadPosRankSum=2.802;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1224,141,0 chrXV 242786 . C T 903 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:45:99:936,99,0 chrXV 243462 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.355;QD=22.74;ReadPosRankSum=1.688;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3548,381,0 chrXV 243670 . T C 4569.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.08;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4569,489,0 chrXV 244063 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.05;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2748,294,0 chrXV 244291 . A T 2540 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.66;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2573,264,0 chrXV 244324 . T A 2836 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.83;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2869,306,0 chrXV 244393 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3352,343,0 chrXV 244528 . A T 3142 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.18;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3175,330,0 chrXV 244783 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.57;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3784,388,0 chrXV 244803 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.435;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.173;QD=23.21;ReadPosRankSum=1.711;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3736,402,0 chrXV 244855 . A C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.49;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3441,375,0 chrXV 245875 . G C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.46;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3285,351,0 chrXV 245914 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.21;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3058,321,0 chrXV 245956 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.8695;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.68;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2685,279,0 chrXV 246022 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.78;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2506,267,0 chrXV 246081 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.89;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2622,267,0 chrXV 246115 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.73;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2714,285,0 chrXV 246679 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3016,312,0 chrXV 247115 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.181;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.422;QD=24.55;ReadPosRankSum=1.688;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3830,414,0 chrXV 247141 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.2967;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.04;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4014,418,0 chrXV 247228 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2045;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.12;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3274,351,0 chrXV 247346 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=22.45;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2413,246,0 chrXV 247349 . A T 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=1.369;QD=21.64;ReadPosRankSum=1.699;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2305,240,0 chrXV 247461 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.00;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2294,255,0 chrXV 247462 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.50;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2235,252,0 chrXV 247525 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.92;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2400,243,0 chrXV 247572 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.97;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2742,273,0 chrXV 247746 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2719;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.72;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2811,285,0 chrXV 247923 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2129;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.695;QD=24.93;ReadPosRankSum=1.710;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3939,423,0 chrXV 248073 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2410;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.57;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3583,375,0 chrXV 248262 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2669,279,0 chrXV 248365 . C G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.7152;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.94;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3245,345,0 chrXV 248560 . C T 5449.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.66;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5449,562,0 chrXV 248578 . G A 5144.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.08;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5144,550,0 chrXV 248750 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.72;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5479,565,0 chrXV 248887 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4205,445,0 chrXV 248980 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.89;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3777,379,0 chrXV 248992 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=172;Dels=0.00;FS=2.234;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.527;QD=20.23;ReadPosRankSum=2.923;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3479,369,0 chrXV 249082 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.702;QD=24.00;ReadPosRankSum=1.709;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3552,372,0 chrXV 249246 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.45;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2772,288,0 chrXV 249416 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.477;QD=22.51;ReadPosRankSum=1.707;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3184,342,0 chrXV 249478 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3850,403,0 chrXV 249516 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3438,366,0 chrXV 249588 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3333,357,0 chrXV 249980 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3643,387,0 chrXV 250175 . A C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=18.8942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.64;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3283,354,0 chrXV 250385 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.9678;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.91;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4306,439,0 chrXV 250527 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2796;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.94;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4020,409,0 chrXV 251243 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.06;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1114,120,0 chrXV 251267 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.02;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1368,144,0 chrXV 252485 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.07;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3476,378,0 chrXV 252721 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.98;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2982,306,0 chrXV 253558 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3541,364,0 chrXV 253929 . C A 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=177;Dels=0.01;FS=3.035;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.105;QD=18.63;ReadPosRankSum=2.309;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3298,390,0 chrXV 253930 . A C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.01;FS=3.034;HaplotypeScore=5.2986;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.007;QD=18.84;ReadPosRankSum=2.365;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3335,396,0 chrXV 254241 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=4.097;HaplotypeScore=13.1592;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.383;QD=23.56;ReadPosRankSum=1.679;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3120,333,0 chrXV 254857 . C G 338 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:39:371,39,0 chrXV 254919 . C T 1359 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1392,144,0 chrXV 255018 . T C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.023;QD=21.74;ReadPosRankSum=1.640;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1685,177,0 chrXV 255031 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.01;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2026,213,0 chrXV 256670 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.304;QD=25.05;ReadPosRankSum=1.689;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2062,216,0 chrXV 257252 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.0210;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.86;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4027,418,0 chrXV 257554 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.38;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3316,340,0 chrXV 257615 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.1315;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.69;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3297,348,0 chrXV 257759 . G C 3986.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.9747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,165:171:99:3986,426,0 chrXV 259310 . T A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9874;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.89;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3935,423,0 chrXV 259644 . T G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.749;QD=24.51;ReadPosRankSum=1.658;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3530,378,0 chrXV 260936 . C G 2337 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.69;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2370,252,0 chrXV 261118 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=6.9200;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.696;QD=25.62;ReadPosRankSum=1.667;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2774,288,0 chrXV 261583 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3979,415,0 chrXV 263860 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=158;Dels=0.00;FS=8.288;HaplotypeScore=12.2290;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.325;QD=23.47;ReadPosRankSum=2.418;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3709,393,0 chrXV 264290 . G A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.3181;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.81;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5268,538,0 chrXV 265232 . T A 1658 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1691,174,0 chrXV 265798 . A G 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.132;QD=23.96;ReadPosRankSum=1.697;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4768,505,0 chrXV 266130 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.01;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2633,288,0 chrXV 266157 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.988;QD=23.90;ReadPosRankSum=2.396;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2208,231,0 chrXV 266234 . T C 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.485;QD=22.48;ReadPosRankSum=1.650;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:977,105,0 chrXV 266279 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.91;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1691,180,0 chrXV 267165 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4257,439,0 chrXV 270070 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.109;QD=21.68;ReadPosRankSum=1.640;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4098,438,0 chrXV 271365 . T C 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=216;Dels=0.00;FS=5.064;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.814;QD=23.22;ReadPosRankSum=1.716;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5016,526,0 chrXV 271895 . G C 1970 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=21.65;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2003,219,0 chrXV 272022 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.2185;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.40;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3782,402,0 chrXV 272235 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.5956;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.26;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4975,523,0 chrXV 273227 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.853;QD=23.32;ReadPosRankSum=1.706;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3158,339,0 chrXV 273332 . C T 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.5499;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.938;QD=24.44;ReadPosRankSum=1.137;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4717,484,0 chrXV 273621 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4956,511,0 chrXV 273775 . G C 5028.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.4063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:5028,526,0 chrXV 273944 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.931;DP=160;Dels=0.00;FS=4.407;HaplotypeScore=11.9373;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.710;QD=21.71;ReadPosRankSum=1.212;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3473,369,0 chrXV 274033 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.04;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5658,580,0 chrXV 274195 . G A 5630.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.9561;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.96;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5630,580,0 chrXV 274222 . G A 5119.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.5896;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.96;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5119,529,0 chrXV 274261 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.13;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4903,508,0 chrXV 275442 . T A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.37;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3602,373,0 chrXV 277467 . C G 2118 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2151,225,0 chrXV 277699 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1297,138,0 chrXV 278237 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2302,234,0 chrXV 278967 . C G 2326 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2359,252,0 chrXV 279942 . T A 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=158;Dels=0.00;FS=5.526;HaplotypeScore=9.1105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.669;QD=24.63;ReadPosRankSum=2.956;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3891,406,0 chrXV 281670 . C A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.31;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3973,400,0 chrXV 282519 . G C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.85;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3863,408,0 chrXV 284163 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.9504;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4106,435,0 chrXV 285417 . G A 4769.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.7293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4769,490,0 chrXV 285588 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=120;Dels=0.00;FS=2.556;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.101;QD=22.40;ReadPosRankSum=2.942;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2721,282,0 chrXV 289957 . A G 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=207;Dels=0.00;FS=9.585;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.002;QD=24.12;ReadPosRankSum=2.402;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4992,546,0 chrXV 290199 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=20.8454;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.27;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3764,396,0 chrXV 290233 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.40;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3767,382,0 chrXV 290268 . G C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.2341;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.47;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3485,366,0 chrXV 290676 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1368,138,0 chrXV 290822 . T G 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.467;QD=26.97;ReadPosRankSum=2.402;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,153:155:99:4180,436,0 chrXV 292858 . G T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.42;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3737,388,0 chrXV 292883 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=3.027;HaplotypeScore=8.7278;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.950;QD=22.57;ReadPosRankSum=2.370;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3498,378,0 chrXV 293132 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.6818;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.553;QD=23.85;ReadPosRankSum=1.683;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3387,357,0 chrXV 293590 . A G 3083 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3116,333,0 chrXV 294178 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.30;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3144,336,0 chrXV 294284 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=173;Dels=0.00;FS=5.203;HaplotypeScore=15.8558;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.994;QD=23.69;ReadPosRankSum=1.712;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:4099,441,0 chrXV 294330 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.01;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5045,508,0 chrXV 294382 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.45;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4150,456,0 chrXV 294475 . G T 4930.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.05;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4930,523,0 chrXV 294553 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.10;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4092,430,0 chrXV 295275 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.50;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4018,432,0 chrXV 295276 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=3.301;HaplotypeScore=4.7819;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.767;QD=20.31;ReadPosRankSum=1.715;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4122,433,0 chrXV 296509 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.64;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3201,345,0 chrXV 296577 . A C 2887 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.47;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2920,309,0 chrXV 296690 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=25.41;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3158,322,0 chrXV 296786 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=7.493;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=0.121;QD=24.19;ReadPosRankSum=2.412;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3250,348,0 chrXV 296804 . T C 2803 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=22.42;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2836,306,0 chrXV 296918 . A C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=23.42;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3536,378,0 chrXV 296955 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=20.42;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2647,273,0 chrXV 296969 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=17.95;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2420,249,0 chrXV 296973 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=16.92;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2300,246,0 chrXV 296990 . A G 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=7.001;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-2.295;QD=15.67;ReadPosRankSum=2.411;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2023,219,0 chrXV 297031 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=0.022;QD=17.21;ReadPosRankSum=1.665;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2684,288,0 chrXV 297046 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.09;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3375,340,0 chrXV 297073 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.03;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3061,321,0 chrXV 297107 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.03;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2787,288,0 chrXV 297302 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.75;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2536,267,0 chrXV 297422 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.88;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2731,294,0 chrXV 297608 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.23;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2771,300,0 chrXV 297818 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3018,327,0 chrXV 298054 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.12;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2735,279,0 chrXV 298223 . A G 3104 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.17;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3137,342,0 chrXV 298234 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=149;Dels=0.00;FS=3.611;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.284;QD=21.98;ReadPosRankSum=1.661;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3275,339,0 chrXV 298306 . A G 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=218;Dels=0.00;FS=2.925;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.760;QD=22.85;ReadPosRankSum=2.427;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4982,523,0 chrXV 298630 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1553;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.45;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2992,306,0 chrXV 298844 . G T 2444 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=24.44;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2477,249,0 chrXV 298850 . T A 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=6.407;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=1.408;QD=22.82;ReadPosRankSum=2.402;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2406,255,0 chrXV 298882 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=113;Dels=0.00;FS=6.385;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.526;QD=21.88;ReadPosRankSum=2.405;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,108:113:99:2505,267,0 chrXV 299042 . T G 1380 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=14.37;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1413,150,0 chrXV 299064 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.28;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1433,156,0 chrXV 299136 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=3.013;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=1.379;QD=24.36;ReadPosRankSum=2.381;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2664,282,0 chrXV 299161 . T G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.266;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.033;QD=24.83;ReadPosRankSum=0.233;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2665,285,0 chrXV 299502 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=25.41;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1405,144,0 chrXV 299731 . G T 1683 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=14.51;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1716,186,0 chrXV 299739 . C T 1620 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=13.73;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1653,174,0 chrXV 299741 . G A 1610 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=14.00;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1643,171,0 chrXV 299751 . G A 1802 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=13.15;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1835,189,0 chrXV 299757 . A G 1264 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=6.329;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=-1.548;QD=12.51;ReadPosRankSum=2.401;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1297,138,0 chrXV 299759 . A T 1304 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=13.17;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1337,138,0 chrXV 299762 . G C 1222 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=12.34;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1255,138,0 chrXV 299764 . A T 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=12.99;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1319,138,0 chrXV 299765 . G T 1285 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=12.98;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1318,138,0 chrXV 299766 . A T 1301 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=13.14;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1334,138,0 chrXV 299771 . C G 1264 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=9.65;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1297,138,0 chrXV 299774 . G A 1279 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=9.76;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1312,141,0 chrXV 299775 . C A 1332 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=10.17;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1365,141,0 chrXV 299778 . A G 1260 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=8.63;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1293,141,0 chrXV 299793 . G C 1573 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=9.04;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:1606,171,0 chrXV 299796 . C A 1708 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.8131;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=9.82;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:1741,180,0 chrXV 299808 . C A 1670 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.6904;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=9.33;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:1703,177,0 chrXV 299839 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;MQRankSum=-0.995;QD=11.36;ReadPosRankSum=1.692;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2010,216,0 chrXV 299855 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=13.46;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2106,219,0 chrXV 299876 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=14.27;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1860,204,0 chrXV 299879 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=14.54;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1850,198,0 chrXV 299931 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=17.66;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1905,207,0 chrXV 299935 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=18.01;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2032,225,0 chrXV 299976 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=22.19;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2762,300,0 chrXV 300004 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6184;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=20.23;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2198,240,0 chrXV 300055 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.73;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1728,183,0 chrXV 300097 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=23.67;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1950,207,0 chrXV 300301 . G T 2380 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.59;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2413,246,0 chrXV 300336 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.86;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2544,261,0 chrXV 300373 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.68;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2846,291,0 chrXV 300871 . C A 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=23.25;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2777,297,0 chrXV 300887 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=23.63;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2845,297,0 chrXV 301075 . T G 2993 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.85;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3026,330,0 chrXV 301153 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.18;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2699,276,0 chrXV 301621 . C G 6068.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.3697;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.70;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,251:256:99:6068,660,0 chrXV 303067 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2731,288,0 chrXV 303214 . G T 1635 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=19.70;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1668,174,0 chrXV 303991 . A T 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.443;QD=23.54;ReadPosRankSum=1.656;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3258,337,0 chrXV 304383 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5171,532,0 chrXV 305097 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.77;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3518,358,0 chrXV 305340 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=205;Dels=0.00;FS=9.622;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.636;QD=19.34;ReadPosRankSum=2.966;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:3965,420,0 chrXV 305341 . T A 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.735;QD=19.85;ReadPosRankSum=1.631;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4089,427,0 chrXV 305436 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4295,459,0 chrXV 306068 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=6.389;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.305;QD=22.74;ReadPosRankSum=2.339;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3057,324,0 chrXV 307256 . A T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.29;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3866,394,0 chrXV 307351 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3130,321,0 chrXV 307589 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.661;QD=25.21;ReadPosRankSum=1.626;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2504,264,0 chrXV 307879 . T C 2786 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.44;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2819,306,0 chrXV 309504 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3882,411,0 chrXV 310257 . A G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.938;QD=20.65;ReadPosRankSum=1.637;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2304,240,0 chrXV 310258 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.80;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2300,240,0 chrXV 310417 . G T 3160 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.69;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3193,331,0 chrXV 311157 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=161;Dels=0.00;FS=4.854;HaplotypeScore=15.6528;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.970;QD=23.71;ReadPosRankSum=0.926;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3817,417,0 chrXV 312146 . A T 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.172;QD=21.83;ReadPosRankSum=1.683;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4607,475,0 chrXV 312151 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.12;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4498,475,0 chrXV 312245 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=217;Dels=0.00;FS=10.999;HaplotypeScore=19.6012;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.388;QD=22.62;ReadPosRankSum=2.865;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:4909,537,0 chrXV 312534 . T C 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=15.2703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.564;QD=25.28;ReadPosRankSum=1.669;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4172,439,0 chrXV 314187 . C G 4106.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.35;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4106,430,0 chrXV 316958 . T G 6242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.9206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.601;QD=25.48;ReadPosRankSum=1.676;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:6242,661,0 chrXV 317329 . C T 4330.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.52;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4330,454,0 chrXV 318136 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4017,421,0 chrXV 318509 . T G 6448.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=21.0066;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.28;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6448,702,0 chrXV 324875 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=6.3524;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.295;QD=23.24;ReadPosRankSum=1.670;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2613,279,0 chrXV 327197 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.46;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3261,345,0 chrXV 327350 . A T 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.892;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.355;QD=23.33;ReadPosRankSum=1.638;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3430,360,0 chrXV 327797 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.76;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3167,330,0 chrXV 327815 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.53;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3074,321,0 chrXV 327917 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.29;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2899,312,0 chrXV 328029 . A C 3035 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.35;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3068,330,0 chrXV 328049 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.71;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3122,330,0 chrXV 328349 . A G 5656.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.9800;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.97;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5656,592,0 chrXV 328457 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.61;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4732,484,0 chrXV 328464 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.87;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4152,441,0 chrXV 328484 . G T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2255;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.29;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3742,391,0 chrXV 328747 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.07;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3685,379,0 chrXV 328791 . C A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3465,363,0 chrXV 328865 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=4.095;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.492;QD=20.53;ReadPosRankSum=1.696;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2024,219,0 chrXV 329425 . T G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.75;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4108,438,0 chrXV 329473 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.488;QD=22.67;ReadPosRankSum=1.691;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3899,414,0 chrXV 329561 . C G 5579.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.69;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:5579,589,0 chrXV 330438 . T C 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=221;Dels=0.00;FS=2.896;HaplotypeScore=18.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.850;QD=22.74;ReadPosRankSum=2.383;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5025,538,0 chrXV 330787 . C G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.97;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3547,372,0 chrXV 330823 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.232;DP=154;Dels=0.00;FS=8.848;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.880;QD=23.42;ReadPosRankSum=3.391;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3606,376,0 chrXV 331520 . T A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.91;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3861,397,0 chrXV 331767 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=187;Dels=0.00;FS=8.643;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.639;QD=23.07;ReadPosRankSum=3.385;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:4314,454,0 chrXV 331799 . A C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=2.852;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.446;QD=21.61;ReadPosRankSum=2.315;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3565,387,0 chrXV 334807 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2681,285,0 chrXV 334926 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.690;QD=22.73;ReadPosRankSum=1.680;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3079,324,0 chrXV 335413 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.267;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.080;QD=25.17;ReadPosRankSum=1.712;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4379,463,0 chrXV 336813 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=20.0872;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4683,475,0 chrXV 337020 . T A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3379,349,0 chrXV 337882 . G A 4352.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.04;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4352,462,0 chrXV 337970 . G C 4156.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.9668;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.96;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4156,441,0 chrXV 338019 . A G 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=3.072;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.911;QD=24.02;ReadPosRankSum=1.716;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5068,552,0 chrXV 338412 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3488,358,0 chrXV 338579 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2549,270,0 chrXV 339985 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3157,322,0 chrXV 340281 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9899;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.84;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1797,189,0 chrXV 340625 . T C 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.256;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.209;QD=22.86;ReadPosRankSum=1.618;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2136,222,0 chrXV 340701 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1750,186,0 chrXV 340736 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.45;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1550,165,0 chrXV 340936 . T A 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.660;QD=26.15;ReadPosRankSum=1.660;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1288,132,0 chrXV 340969 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1354,138,0 chrXV 341179 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1428,150,0 chrXV 343484 . G T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4147,421,0 chrXV 343921 . A G 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5855;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.664;QD=23.60;ReadPosRankSum=1.614;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4838,514,0 chrXV 344470 . T G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=193;Dels=0.00;FS=2.580;HaplotypeScore=4.8787;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.784;QD=19.65;ReadPosRankSum=2.963;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:3793,408,0 chrXV 344472 . C A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.7768;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.43;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3923,408,0 chrXV 344793 . A T 5625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.587;DP=574;Dels=0.00;FS=11.107;HaplotypeScore=92.1965;MLEAC=1;MLEAF=0.500;MQ=47.01;MQ0=14;MQRankSum=4.089;QD=9.80;ReadPosRankSum=4.930;SB=-2.819e+03 GT:AD:DP:GQ:PL 0/1:233,303:574:99:5625,0,2801 chrXV 344794 . C T 5599.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.813;DP=582;Dels=0.00;FS=3.025;HaplotypeScore=89.8304;MLEAC=1;MLEAF=0.500;MQ=46.57;MQ0=16;MQRankSum=7.339;QD=9.62;ReadPosRankSum=5.688;SB=-2.798e+03 GT:AD:DP:GQ:PL 0/1:281,300:582:99:5599,0,3026 chrXV 344892 . C T 1226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.604;DP=294;Dels=0.00;FS=91.112;HaplotypeScore=35.4546;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=67;MQRankSum=4.860;QD=4.17;ReadPosRankSum=5.412;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:197,94:294:99:1256,0,1393 chrXV 344895 . T C 1184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.831;DP=276;Dels=0.00;FS=76.317;HaplotypeScore=30.0200;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=60;MQRankSum=5.061;QD=4.29;ReadPosRankSum=7.849;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:187,87:276:99:1214,0,1238 chrXV 344901 . G A 1254.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.195;DP=249;Dels=0.00;FS=73.651;HaplotypeScore=17.1795;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=51;MQRankSum=4.784;QD=5.04;ReadPosRankSum=6.661;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:147,93:249:99:1284,0,1063 chrXV 345065 . C T 1005.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;DP=443;Dels=0.00;FS=58.271;HaplotypeScore=74.5085;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=86;MQRankSum=4.656;QD=2.27;ReadPosRankSum=-5.203;SB=-5.880e+02 GT:AD:DP:GQ:PL 0/1:279,155:443:99:1035,0,1884 chrXV 345072 . C T 1458.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.329;DP=401;Dels=0.00;FS=12.941;HaplotypeScore=134.3812;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=72;MQRankSum=3.358;QD=3.64;ReadPosRankSum=-3.648;SB=-1.704e+03 GT:AD:DP:GQ:PL 0/1:169,230:401:99:1488,0,1027 chrXV 345075 . T C 1135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.183;DP=373;Dels=0.00;FS=5.445;HaplotypeScore=119.3406;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=67;MQRankSum=3.697;QD=3.04;ReadPosRankSum=-1.001;SB=-1.546e+03 GT:AD:DP:GQ:PL 0/1:158,213:373:99:1165,0,903 chrXV 345081 . G T 878.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.388;DP=308;Dels=0.00;FS=2.420;HaplotypeScore=80.3066;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=59;MQRankSum=6.039;QD=2.85;ReadPosRankSum=2.855;SB=-1.230e+03 GT:AD:DP:GQ:PL 0/1:124,124:308:99:908,0,592 chrXV 345082 . C T 850.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.122;DP=311;Dels=0.00;FS=9.139;HaplotypeScore=81.0953;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=58;MQRankSum=7.832;QD=2.73;ReadPosRankSum=2.911;SB=-1.308e+03 GT:AD:DP:GQ:PL 0/1:181,129:311:99:880,0,723 chrXV 347793 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.674;QD=23.29;ReadPosRankSum=1.703;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2828,300,0 chrXV 348182 . A G 2931 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2964,312,0 chrXV 348935 . G A 5223.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.48;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5223,538,0 chrXV 349164 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4279,451,0 chrXV 349427 . T A 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.509;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.230;QD=22.48;ReadPosRankSum=1.669;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3731,387,0 chrXV 349515 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.9173;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.01;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3573,378,0 chrXV 349540 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.721;QD=18.30;ReadPosRankSum=1.713;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3386,363,0 chrXV 349766 . G T 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=3.135;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.206;QD=24.75;ReadPosRankSum=0.558;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4430,460,0 chrXV 349952 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3660,393,0 chrXV 349987 . A C 3099 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.20;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3132,336,0 chrXV 350020 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=4.559;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.173;QD=26.29;ReadPosRankSum=1.703;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3188,333,0 chrXV 350053 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.17;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3205,333,0 chrXV 350129 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.03;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3162,322,0 chrXV 350275 . T A 2773 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.76;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2806,294,0 chrXV 350302 . C G 2745 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.07;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2778,297,0 chrXV 350368 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.18;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2330,234,0 chrXV 350863 . T C 2779 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.38;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2812,303,0 chrXV 351070 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.91;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:4172,424,0 chrXV 351325 . C A 6240.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6240,664,0 chrXV 351470 . A G 5974.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.80;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5974,651,0 chrXV 351541 . C T 5899.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.4314;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.95;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5899,604,0 chrXV 351607 . C T 4816.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.4755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.50;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4816,511,0 chrXV 352665 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=201;Dels=0.00;FS=5.776;HaplotypeScore=9.1009;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.086;QD=23.29;ReadPosRankSum=2.945;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:4682,496,0 chrXV 353226 . C G 4918.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4918,520,0 chrXV 353934 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.31;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2134,219,0 chrXV 354129 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.358;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.499;QD=23.56;ReadPosRankSum=-0.866;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2483,270,0 chrXV 354230 . C G 1997 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.84;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2030,213,0 chrXV 354233 . A G 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.171;QD=19.37;ReadPosRankSum=2.934;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:3,103:107:99:2106,222,0 chrXV 354288 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.078;QD=17.12;ReadPosRankSum=2.394;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1540,162,0 chrXV 354569 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.16;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2349,249,0 chrXV 354577 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.23;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2449,252,0 chrXV 354657 . T C 2189 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.80;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2222,234,0 chrXV 354680 . A T 2195 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.66;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2228,228,0 chrXV 354739 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.5954;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.70;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1849,198,0 chrXV 354846 . A T 930 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.14;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:963,105,0 chrXV 354963 . G A 56.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:89,9,0 chrXV 355404 . A T 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=5.071;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.603;QD=26.07;ReadPosRankSum=1.681;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3520,364,0 chrXV 355477 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=8.603;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.590;QD=24.93;ReadPosRankSum=2.410;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3100,330,0 chrXV 355517 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.53;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2691,285,0 chrXV 355645 . A T 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.175;QD=25.22;ReadPosRankSum=1.659;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3607,367,0 chrXV 355779 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=7.4172;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.292;QD=25.44;ReadPosRankSum=1.677;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3238,342,0 chrXV 355981 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9472;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.01;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2234,231,0 chrXV 356119 . T G 2057 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.49;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2090,216,0 chrXV 356384 . A G 1572 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.95;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1605,168,0 chrXV 356416 . T C 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.262;QD=23.49;ReadPosRankSum=1.689;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1936,207,0 chrXV 356505 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.93;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2968,303,0 chrXV 357029 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.83;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4420,463,0 chrXV 357107 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.36;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3481,361,0 chrXV 357164 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3561;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.496;QD=23.67;ReadPosRankSum=1.653;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3158,327,0 chrXV 357194 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.188;QD=21.36;ReadPosRankSum=1.608;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3024,318,0 chrXV 357232 . A C 3066 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.59;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3099,330,0 chrXV 357276 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9528;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.569;QD=20.88;ReadPosRankSum=1.684;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3040,324,0 chrXV 357287 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2825,297,0 chrXV 357367 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.39;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2395,249,0 chrXV 357437 . C A 2490 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.41;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2523,267,0 chrXV 357574 . T C 2674 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.53;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2707,285,0 chrXV 357984 . G A 5445.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.50;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5445,550,0 chrXV 357991 . T C 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=246;Dels=0.00;FS=9.027;HaplotypeScore=6.8585;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.337;QD=20.43;ReadPosRankSum=3.425;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:4,242:246:99:5025,529,0 chrXV 358094 . C A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7576;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.40;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4212,430,0 chrXV 358111 . A C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.63;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3711,393,0 chrXV 358597 . A G 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.807;HaplotypeScore=15.3708;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.676;QD=24.61;ReadPosRankSum=1.713;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4578,492,0 chrXV 359602 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3903,403,0 chrXV 359899 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.81;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3846,405,0 chrXV 360593 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.41;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3711,399,0 chrXV 360797 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.09;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4165,430,0 chrXV 360995 . T A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.52;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3504,358,0 chrXV 361051 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.32;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3842,414,0 chrXV 361461 . C A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.97;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3662,376,0 chrXV 361558 . A T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.15;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3768,388,0 chrXV 361719 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.025;QD=24.43;ReadPosRankSum=1.709;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3615,381,0 chrXV 361741 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.32;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3284,336,0 chrXV 361759 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.91;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3462,349,0 chrXV 362126 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.629;QD=19.37;ReadPosRankSum=2.412;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2570,279,0 chrXV 362429 . G C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3343,354,0 chrXV 363413 . T A 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=9.891;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.958;QD=23.18;ReadPosRankSum=2.866;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3291,360,0 chrXV 363553 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.003;QD=25.31;ReadPosRankSum=1.706;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3392,363,0 chrXV 363824 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.35;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3473,355,0 chrXV 363970 . T G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=95.2761;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=0.28;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,3:100:6:59,6,0 chrXV 363974 . C A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=96.0606;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=0.17;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:6:49,6,0 chrXV 364095 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2317,243,0 chrXV 364302 . T A 2446 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.59;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2479,249,0 chrXV 364509 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1900,201,0 chrXV 364854 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4255,433,0 chrXV 365208 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3872,397,0 chrXV 365792 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.278;QD=22.09;ReadPosRankSum=1.699;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4706,499,0 chrXV 365917 . G A 5400.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.00;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5400,559,0 chrXV 366186 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.35;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4234,462,0 chrXV 366495 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=151;Dels=0.00;FS=3.016;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.496;QD=24.04;ReadPosRankSum=2.352;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3630,381,0 chrXV 366618 . C T 4965.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.59;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4965,529,0 chrXV 366780 . C T 5005.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.28;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5005,511,0 chrXV 366884 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3407,340,0 chrXV 367187 . T G 1966 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=14.8090;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.91;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1999,216,0 chrXV 367217 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8130;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.83;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2440,255,0 chrXV 367258 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.31;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2760,297,0 chrXV 367288 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.652;QD=20.15;ReadPosRankSum=1.652;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2653,279,0 chrXV 367292 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=1.320;QD=20.75;ReadPosRankSum=1.622;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2647,285,0 chrXV 367410 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.123;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.577;QD=24.02;ReadPosRankSum=1.673;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2916,312,0 chrXV 367673 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.498;QD=23.78;ReadPosRankSum=1.709;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3543,378,0 chrXV 367742 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.96;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2764,294,0 chrXV 367959 . A T 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=135;Dels=0.00;FS=7.084;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.191;QD=24.56;ReadPosRankSum=2.413;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3316,342,0 chrXV 368025 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.02;FS=0.000;HaplotypeScore=14.0511;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=20.96;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3114,318,0 chrXV 368035 . G C 2935 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=19.97;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2968,312,0 chrXV 368066 . C T 159.06 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=97.0605;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=1.46;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:21:192,21,0 chrXV 368190 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.87;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4501,460,0 chrXV 368375 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3997,412,0 chrXV 368964 . A C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3463,369,0 chrXV 369165 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.06;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2940,309,0 chrXV 369329 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3838,400,0 chrXV 369380 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=3.363;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.290;QD=24.94;ReadPosRankSum=1.658;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3567,378,0 chrXV 369488 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3558,367,0 chrXV 369542 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.25;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3009,312,0 chrXV 369848 . T G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.215;QD=23.14;ReadPosRankSum=1.710;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3656,399,0 chrXV 369905 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3312,354,0 chrXV 370186 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.32;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2793,282,0 chrXV 370229 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.47;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3214,351,0 chrXV 370296 . T C 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=3.763;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.315;QD=25.09;ReadPosRankSum=1.693;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,87:91:99:2316,246,0 chrXV 371124 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.64;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3083,330,0 chrXV 371158 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.72;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3986,423,0 chrXV 371543 . G C 2534 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3302;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=23.46;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2567,276,0 chrXV 371632 . G C 3202 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3235,348,0 chrXV 372056 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.3856;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.32;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3024,309,0 chrXV 372209 . C G 2370 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=18.66;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2403,258,0 chrXV 372211 . T C 2336 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=18.39;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2369,258,0 chrXV 372217 . T C 2549 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=20.23;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2582,273,0 chrXV 372255 . T G 2284 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=19.52;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2317,240,0 chrXV 372266 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=18.82;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1708,171,0 chrXV 372353 . C T 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DP=78;Dels=0.00;FS=6.021;HaplotypeScore=63.5514;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.091;QD=22.62;ReadPosRankSum=1.550;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1797,183,0 chrXV 372369 . G T 1844 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.26;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1877,204,0 chrXV 372375 . G T 2201 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=23.17;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2234,225,0 chrXV 372460 . T C 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=56;Dels=0.00;FS=3.068;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.023;QD=19.04;ReadPosRankSum=2.176;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:2,52:56:99:1099,120,0 chrXV 372557 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.44;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1964,207,0 chrXV 372714 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.35;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3524,364,0 chrXV 372761 . T A 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.838;QD=24.88;ReadPosRankSum=1.665;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3857,414,0 chrXV 373468 . G T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.99;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3998,412,0 chrXV 373539 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=3.049;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.338;QD=23.25;ReadPosRankSum=2.341;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2684,288,0 chrXV 373552 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=6.849;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.340;QD=22.74;ReadPosRankSum=2.356;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2421,258,0 chrXV 373586 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.31;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2443,255,0 chrXV 373701 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.58;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2565,270,0 chrXV 374373 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.03;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2962,306,0 chrXV 374442 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.437;QD=25.04;ReadPosRankSum=2.413;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3405,363,0 chrXV 374481 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=27.29;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3766,394,0 chrXV 374598 . C G 2427 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.22;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2460,267,0 chrXV 374613 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.00;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3230,328,0 chrXV 374669 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.21;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3620,370,0 chrXV 374709 . G T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.54;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3386,357,0 chrXV 374751 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.92;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3588,373,0 chrXV 374763 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.12;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3561,381,0 chrXV 374879 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.06;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3463,355,0 chrXV 374882 . T A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.88;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3326,343,0 chrXV 375158 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3541;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.78;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4287,448,0 chrXV 375315 . G A 4557.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4557,481,0 chrXV 375420 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=195;Dels=0.00;FS=2.743;HaplotypeScore=21.1228;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.019;QD=22.57;ReadPosRankSum=2.387;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4401,471,0 chrXV 375648 . C T 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=3.310;HaplotypeScore=17.2958;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.313;QD=23.53;ReadPosRankSum=0.445;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4989,511,0 chrXV 375894 . C A 3128 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.50;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3161,333,0 chrXV 376190 . C A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.04;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3866,391,0 chrXV 376252 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4753;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.39;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3512,372,0 chrXV 376289 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3437,357,0 chrXV 376576 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3275,337,0 chrXV 376957 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.10;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5799,604,0 chrXV 377032 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.25;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4232,465,0 chrXV 377037 . G A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.81;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4411,454,0 chrXV 377174 . C G 5380.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.99;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5380,577,0 chrXV 377281 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.38;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4723,484,0 chrXV 377284 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=218;Dels=0.00;FS=3.299;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=1.303;QD=20.51;ReadPosRankSum=1.446;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4471,472,0 chrXV 377548 . G A 6167.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.57;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6167,661,0 chrXV 377605 . C T 6034.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6034,613,0 chrXV 377656 . G A 6159.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.94;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6159,622,0 chrXV 377730 . C T 6020.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.7919;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.18;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:6020,640,0 chrXV 377760 . G A 5816.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.74;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5816,604,0 chrXV 377924 . T C 5824.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.73;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:5824,613,0 chrXV 378043 . T A 5490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=237;Dels=0.00;FS=5.055;HaplotypeScore=21.1190;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.987;QD=23.16;ReadPosRankSum=1.688;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5490,565,0 chrXV 378090 . G A 6380.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=21.7886;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.26;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6380,679,0 chrXV 378122 . C G 6155.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=3.4905;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.38;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6155,643,0 chrXV 378126 . T C 5920.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=5.0849;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.29;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5920,631,0 chrXV 378233 . G A 5270.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=19.0943;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.08;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,228:250:99:5270,567,0 chrXV 378285 . T C 6407.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.4586;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.48;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6407,676,0 chrXV 378723 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.12;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4342,462,0 chrXV 378827 . C T 5392.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.5546;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.65;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5392,556,0 chrXV 378890 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=202;Dels=0.00;FS=5.969;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.385;QD=21.72;ReadPosRankSum=2.965;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4388,466,0 chrXV 378902 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.50;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4028,421,0 chrXV 379161 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.77;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3243,339,0 chrXV 379178 . T C 3111 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7211;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.94;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3144,336,0 chrXV 379232 . A C 2938 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.72;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2971,312,0 chrXV 379289 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=150;Dels=0.00;FS=6.009;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.318;QD=21.22;ReadPosRankSum=2.939;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3216,342,0 chrXV 379310 . G T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.42;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3341,357,0 chrXV 379384 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.22;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3609,373,0 chrXV 379448 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.262;QD=22.14;ReadPosRankSum=1.658;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3132,333,0 chrXV 379461 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.34;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3114,321,0 chrXV 379502 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6820;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.36;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3173,322,0 chrXV 379747 . G C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5337;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.56;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3864,414,0 chrXV 379841 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.53;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3425,354,0 chrXV 379848 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.660;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.708;QD=21.31;ReadPosRankSum=1.660;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3123,330,0 chrXV 379879 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.68;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3402,349,0 chrXV 379978 . C T 5442.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.0431;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.19;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5442,574,0 chrXV 380023 . T C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.258;QD=24.01;ReadPosRankSum=1.694;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:4442,460,0 chrXV 380192 . G C 4866.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.4426;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.70;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4866,508,0 chrXV 380297 . C A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8673;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=18.53;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3576,390,0 chrXV 380309 . C A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.0662;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=15.01;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:3438,355,0 chrXV 380446 . T C 4630.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.81;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4630,490,0 chrXV 380513 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=5.276;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.503;QD=22.71;ReadPosRankSum=1.665;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3565,373,0 chrXV 380677 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=113;Dels=0.00;FS=11.041;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.063;QD=20.86;ReadPosRankSum=2.938;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2390,252,0 chrXV 380683 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.822;QD=19.98;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2411,255,0 chrXV 380689 . G T 2625 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=21.52;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2658,273,0 chrXV 380728 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.84;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2124,228,0 chrXV 380751 . A G 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.520;QD=18.66;ReadPosRankSum=1.697;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1862,198,0 chrXV 380935 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=24.44;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2648,282,0 chrXV 380964 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=105;Dels=0.00;FS=4.565;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.530;QD=25.40;ReadPosRankSum=1.698;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2700,279,0 chrXV 381124 . G C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.24;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3466,369,0 chrXV 381361 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.05;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4380,463,0 chrXV 381445 . G A 6542.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.3906;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.96;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6542,664,0 chrXV 381487 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.50;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4342,462,0 chrXV 381497 . C G 3850.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.59;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:3850,420,0 chrXV 381556 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=167;Dels=0.00;FS=17.443;HaplotypeScore=30.3180;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.335;QD=15.97;ReadPosRankSum=2.933;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:3,162:167:99:2700,288,0 chrXV 381571 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=24.9447;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.163;QD=12.20;ReadPosRankSum=1.673;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:2899,312,0 chrXV 381739 . C T 5415.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.14;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5415,577,0 chrXV 381777 . A G 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.0474;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-1.594;QD=19.96;ReadPosRankSum=1.717;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4511,480,0 chrXV 381987 . A T 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.502;HaplotypeScore=16.3539;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.345;QD=25.34;ReadPosRankSum=1.716;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5474,571,0 chrXV 382144 . C T 5438.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.40;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5438,562,0 chrXV 382459 . A G 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=10.800;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.497;QD=25.66;ReadPosRankSum=2.965;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:5107,532,0 chrXV 382511 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6131;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.86;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4224,430,0 chrXV 382531 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=182;Dels=0.00;FS=9.545;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.138;QD=19.18;ReadPosRankSum=2.818;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3490,372,0 chrXV 382535 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.29;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3551,375,0 chrXV 382582 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.11;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3990,406,0 chrXV 382678 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.34;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3773,391,0 chrXV 382816 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.92;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2738,279,0 chrXV 383156 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.35;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2061,222,0 chrXV 383527 . A T 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.817;QD=20.65;ReadPosRankSum=1.667;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1148,120,0 chrXV 383827 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.0305;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.91;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4926,517,0 chrXV 383991 . A G 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.318;QD=23.57;ReadPosRankSum=1.715;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4738,499,0 chrXV 384208 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.13;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4677,481,0 chrXV 384314 . G T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5614;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.37;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3974,406,0 chrXV 384316 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=2.978;HaplotypeScore=4.0553;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.241;QD=20.49;ReadPosRankSum=2.396;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3791,405,0 chrXV 384545 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;MQRankSum=-0.118;QD=22.87;ReadPosRankSum=1.698;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2389,258,0 chrXV 384569 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=23.13;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1814,195,0 chrXV 384592 . C A 2046 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=82.2614;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=20.46;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2079,213,0 chrXV 384665 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=16.28;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2606,282,0 chrXV 384669 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=16.13;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2597,270,0 chrXV 384678 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=151;Dels=0.00;FS=2.564;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=-2.114;QD=13.95;ReadPosRankSum=2.940;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2139,234,0 chrXV 384696 . A G 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=132;Dels=0.00;FS=15.172;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;MQRankSum=1.308;QD=11.11;ReadPosRankSum=3.325;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:1499,162,0 chrXV 384702 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=12.37;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1579,162,0 chrXV 384732 . T A 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=1.570;QD=12.33;ReadPosRankSum=1.700;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1352,141,0 chrXV 384747 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=12.05;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1130,123,0 chrXV 384775 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=13.00;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:969,108,0 chrXV 384785 . C A 934 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=13.74;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:967,108,0 chrXV 384786 . G A 952 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=13.60;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:985,111,0 chrXV 384791 . G C 847 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=12.28;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:880,102,0 chrXV 384864 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=16.73;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2475,258,0 chrXV 384919 . C A 2524 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=21.76;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2557,264,0 chrXV 384942 . A G 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=8.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;MQRankSum=0.825;QD=19.24;ReadPosRankSum=2.399;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1899,207,0 chrXV 384993 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=11.87;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:662,75,0 chrXV 384994 . A G 621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=3.096;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=-0.357;QD=11.94;ReadPosRankSum=2.213;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:75:654,75,0 chrXV 385004 . G A 711 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=15.13;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:744,75,0 chrXV 385035 . C T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;MQRankSum=0.217;QD=19.90;ReadPosRankSum=-0.938;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:988,105,0 chrXV 385049 . A T 1012 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=20.65;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1045,108,0 chrXV 385051 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=19.59;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1032,108,0 chrXV 385066 . G A 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=8.963;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=-1.017;QD=15.24;ReadPosRankSum=1.347;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:993,120,0 chrXV 385067 . A G 962 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=15.27;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:995,120,0 chrXV 385112 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=20.15;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1806,204,0 chrXV 385189 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=12.50;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:75:658,75,0 chrXV 385199 . T C 548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=-1.485;QD=13.05;ReadPosRankSum=1.650;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:66:581,66,0 chrXV 385213 . G A 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.5863;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=1;MQRankSum=-0.082;QD=1.94;ReadPosRankSum=4.510;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:91,23:115:99:253,0,105 chrXV 385326 . A T 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=9.191;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=2.145;QD=23.69;ReadPosRankSum=2.272;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2331,240,0 chrXV 385377 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=24.70;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4496,474,0 chrXV 385418 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=8.363;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=0.223;QD=25.42;ReadPosRankSum=2.411;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4906,520,0 chrXV 385443 . C A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=23.84;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3839,417,0 chrXV 385480 . A G 1584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=95;Dels=0.00;FS=2.804;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-1.050;QD=16.67;ReadPosRankSum=2.398;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1617,174,0 chrXV 385488 . G A 1326 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=16.37;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1359,141,0 chrXV 385489 . T C 1337 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;MQRankSum=-1.561;QD=16.51;ReadPosRankSum=1.604;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1370,147,0 chrXV 385492 . T A 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=0;QD=16.01;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1426,150,0 chrXV 385510 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=0.954;QD=14.13;ReadPosRankSum=1.697;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1418,150,0 chrXV 385526 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=14.15;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1505,162,0 chrXV 385570 . A T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=20.49;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3320,342,0 chrXV 385575 . T A 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=5.747;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.871;QD=18.49;ReadPosRankSum=1.712;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3158,336,0 chrXV 385581 . T A 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=5.940;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-0.097;QD=18.64;ReadPosRankSum=1.711;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3071,327,0 chrXV 385641 . G C 1310 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=55.2201;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=13.10;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1343,150,0 chrXV 385716 . A T 1344 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=13.5365;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=23.17;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1377,141,0 chrXV 385782 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=23.11;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2067,210,0 chrXV 385806 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=24.70;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2207,222,0 chrXV 385865 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=22.33;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2065,219,0 chrXV 385907 . C A 1833 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=23.20;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1866,195,0 chrXV 385934 . G A 1253 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=19.89;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1286,135,0 chrXV 385938 . G C 1157 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=19.28;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1190,126,0 chrXV 385940 . G A 1163 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=19.38;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,126,0 chrXV 385971 . T A 1187 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=16.04;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1220,129,0 chrXV 385998 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=16.76;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1307,141,0 chrXV 385999 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;QD=16.18;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1279,141,0 chrXV 386061 . A T 1359 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=15.80;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1392,150,0 chrXV 386067 . A G 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=-0.742;QD=16.14;ReadPosRankSum=1.691;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1389,150,0 chrXV 386119 . C G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.808;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;MQRankSum=-1.455;QD=15.18;ReadPosRankSum=0.670;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1187,102,0 chrXV 386156 . A C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=77;Dels=0.00;FS=12.115;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-0.382;QD=21.68;ReadPosRankSum=2.909;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1702,177,0 chrXV 386205 . T C 1954 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=21.96;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1987,210,0 chrXV 386216 . G T 2149 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=21.71;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2182,231,0 chrXV 386226 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1473;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=20.50;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2206,234,0 chrXV 386292 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=22.94;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2877,297,0 chrXV 386310 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=24.24;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2748,279,0 chrXV 386386 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.62;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3108,316,0 chrXV 386436 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=25.72;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3884,397,0 chrXV 386470 . A C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.635;QD=23.55;ReadPosRankSum=1.659;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3368,351,0 chrXV 386503 . T A 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.314;QD=20.21;ReadPosRankSum=1.678;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2600,279,0 chrXV 386524 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.63;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2488,258,0 chrXV 386540 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.39;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2495,264,0 chrXV 387059 . C A 3084 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3117,324,0 chrXV 387926 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.81;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1865,198,0 chrXV 388702 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.945;QD=24.84;ReadPosRankSum=1.710;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3825,400,0 chrXV 388869 . T G 2825 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.24;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2858,309,0 chrXV 388886 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.12;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2665,273,0 chrXV 388890 . A T 2623 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.23;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2656,270,0 chrXV 389116 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.106;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.333;QD=26.17;ReadPosRankSum=1.682;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3638,384,0 chrXV 389141 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.99;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3430,372,0 chrXV 389171 . T C 4594.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.93;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4594,498,0 chrXV 389237 . T G 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=202;Dels=0.00;FS=3.021;HaplotypeScore=16.5143;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.276;QD=24.71;ReadPosRankSum=2.413;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4992,535,0 chrXV 389628 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.05;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1737,180,0 chrXV 389923 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.96;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3565,396,0 chrXV 390355 . T A 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.296;QD=23.23;ReadPosRankSum=2.399;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3415,352,0 chrXV 390363 . G C 2932 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.09;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2965,312,0 chrXV 390445 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=2.941;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.085;QD=23.55;ReadPosRankSum=2.355;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3095,324,0 chrXV 390482 . G T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.07;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3370,354,0 chrXV 390621 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.489;QD=24.82;ReadPosRankSum=2.377;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:5014,535,0 chrXV 390692 . A G 5578.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.13;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5578,595,0 chrXV 390795 . G T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.92;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5381,562,0 chrXV 390986 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.27;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3932,423,0 chrXV 391203 . A T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.05;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3657,390,0 chrXV 391236 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.40;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3276,334,0 chrXV 391341 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.12;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3041,318,0 chrXV 391349 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.10;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2796,309,0 chrXV 391445 . C A 2346 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=3.8827;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.55;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2379,240,0 chrXV 391446 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=3.8827;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.40;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2303,234,0 chrXV 391475 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=6.680;HaplotypeScore=15.0822;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.105;QD=17.32;ReadPosRankSum=1.639;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,148:152:99:2666,285,0 chrXV 391682 . G T 5636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=3.145;HaplotypeScore=14.1661;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.870;QD=24.50;ReadPosRankSum=0.204;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5636,595,0 chrXV 391813 . T G 3736.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.87;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3736,408,0 chrXV 391953 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5903;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=22.82;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3159,325,0 chrXV 392258 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2832,294,0 chrXV 392353 . C A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.02;FS=0.000;HaplotypeScore=18.3863;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.06;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3397,349,0 chrXV 392644 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.868;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.532;QD=23.74;ReadPosRankSum=1.672;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4131,438,0 chrXV 392686 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.81;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5087,535,0 chrXV 392767 . A T 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=195;Dels=0.00;FS=3.023;HaplotypeScore=21.6462;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.397;QD=22.79;ReadPosRankSum=2.412;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4445,466,0 chrXV 392963 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.22;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4226,433,0 chrXV 393076 . G T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.26;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4173,433,0 chrXV 393128 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.059;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.789;QD=24.21;ReadPosRankSum=1.713;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4357,463,0 chrXV 393162 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.74;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4181,442,0 chrXV 393187 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.9416;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.710;QD=24.16;ReadPosRankSum=1.710;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3745,393,0 chrXV 393217 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2952;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.95;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3713,379,0 chrXV 393292 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.03;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3785,388,0 chrXV 393310 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.40;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3788,408,0 chrXV 393383 . G C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.53;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3655,387,0 chrXV 393430 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.32;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3696,393,0 chrXV 394003 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.3410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3921,397,0 chrXV 394090 . T G 4025.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4025,435,0 chrXV 394456 . T C 2343 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2376,252,0 chrXV 394567 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3772,399,0 chrXV 395238 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.707;HaplotypeScore=13.9388;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.150;QD=23.45;ReadPosRankSum=1.625;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,161:166:99:3893,409,0 chrXV 395268 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.0960;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.53;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3358,360,0 chrXV 395279 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.04;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3460,363,0 chrXV 395321 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=139;Dels=0.00;FS=9.611;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.181;QD=22.14;ReadPosRankSum=2.950;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3111,333,0 chrXV 395734 . T G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.60;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3887,411,0 chrXV 396070 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3476,378,0 chrXV 396438 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9556;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.39;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3929,417,0 chrXV 396447 . A C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.07;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3806,408,0 chrXV 396793 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.85;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3771,408,0 chrXV 396805 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.23;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3734,396,0 chrXV 397084 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.72;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3605,384,0 chrXV 397192 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.988;QD=24.49;ReadPosRankSum=1.706;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3331,351,0 chrXV 398467 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=176;Dels=0.00;FS=6.246;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.872;QD=24.74;ReadPosRankSum=2.408;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4354,457,0 chrXV 399654 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.234;QD=23.32;ReadPosRankSum=1.709;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3615,381,0 chrXV 400131 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.27;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3017,318,0 chrXV 401275 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5319;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.54;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3852,400,0 chrXV 402498 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=153;Dels=0.00;FS=9.149;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.058;QD=21.86;ReadPosRankSum=3.333;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3344,351,0 chrXV 402509 . A G 3067 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.06;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3100,327,0 chrXV 403103 . T G 2468 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.23;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2501,267,0 chrXV 403168 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.10;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3581,390,0 chrXV 403351 . T C 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=185;Dels=0.00;FS=5.771;HaplotypeScore=8.8851;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.236;QD=23.36;ReadPosRankSum=2.819;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4321,454,0 chrXV 403639 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3814;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.70;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3768,391,0 chrXV 405535 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=4.061;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.505;QD=21.23;ReadPosRankSum=1.700;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2305,243,0 chrXV 407036 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.001;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.610;QD=26.11;ReadPosRankSum=2.356;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3421,360,0 chrXV 407363 . T G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.5694;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.01;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3336,363,0 chrXV 407624 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.76;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4918,508,0 chrXV 407687 . C T 6385.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.91;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6385,670,0 chrXV 407738 . G A 6659.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=24.13;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6659,721,0 chrXV 407771 . C T 6434.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=25.63;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6434,661,0 chrXV 407992 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.19;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3775,402,0 chrXV 408177 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.775;QD=22.63;ReadPosRankSum=1.699;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2409,261,0 chrXV 408490 . T G 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=206;Dels=0.00;FS=8.229;HaplotypeScore=13.1467;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.894;QD=25.21;ReadPosRankSum=3.400;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:4,200:206:99:5194,550,0 chrXV 408523 . T C 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.063;QD=25.37;ReadPosRankSum=1.669;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5606,586,0 chrXV 408658 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=196;Dels=0.00;FS=2.923;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.094;QD=20.39;ReadPosRankSum=2.424;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:3997,429,0 chrXV 408668 . C A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.04;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4060,424,0 chrXV 408874 . A G 5344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=230;Dels=0.00;FS=7.855;HaplotypeScore=12.6809;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.045;QD=23.23;ReadPosRankSum=2.417;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5344,579,0 chrXV 408919 . A G 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=225;Dels=0.00;FS=11.256;HaplotypeScore=19.8709;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.251;QD=22.71;ReadPosRankSum=2.915;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:5110,550,0 chrXV 408953 . C A 6167.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.7664;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.63;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6167,631,0 chrXV 409147 . C T 7175.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.7112;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.00;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:7175,739,0 chrXV 409478 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.365;DP=183;Dels=0.00;FS=13.683;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.428;QD=20.87;ReadPosRankSum=4.166;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:7,174:183:99:3820,405,0 chrXV 409785 . G C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3475,369,0 chrXV 410064 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1693;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.70;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2995,321,0 chrXV 410118 . A T 2672 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.04;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2705,279,0 chrXV 410132 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8254;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.48;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2614,282,0 chrXV 410471 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.99;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3048,307,0 chrXV 410731 . A T 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=11.334;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.248;QD=24.40;ReadPosRankSum=2.820;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2619,264,0 chrXV 410754 . G C 2459 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1967;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.52;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2492,273,0 chrXV 410873 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.63;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2635,270,0 chrXV 411025 . C T 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=6.8864;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.614;QD=19.80;ReadPosRankSum=1.705;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2627,270,0 chrXV 411026 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=126;Dels=0.01;FS=9.106;HaplotypeScore=3.4779;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.400;QD=19.99;ReadPosRankSum=3.388;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2552,270,0 chrXV 411119 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9839;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.95;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3085,330,0 chrXV 411250 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.15;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3027,318,0 chrXV 411283 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.217;QD=22.21;ReadPosRankSum=1.675;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2721,288,0 chrXV 411421 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2419,258,0 chrXV 411579 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3869,397,0 chrXV 411673 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.61;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3815,397,0 chrXV 411900 . C A 5654.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.17;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5654,580,0 chrXV 411919 . T C 6051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=264;Dels=0.00;FS=5.842;HaplotypeScore=10.9161;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.179;QD=22.92;ReadPosRankSum=2.935;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:3,260:264:99:6051,640,0 chrXV 412174 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.95;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4191,433,0 chrXV 412369 . C A 2560 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.69;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2593,273,0 chrXV 412390 . A T 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=3.476;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.939;QD=21.79;ReadPosRankSum=1.673;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2604,276,0 chrXV 412468 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.12;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3063,318,0 chrXV 412551 . C G 1184 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.94;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1217,132,0 chrXV 412613 . G T 2035 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.65;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2068,213,0 chrXV 412659 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.84;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1521,162,0 chrXV 412752 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.82;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1197,126,0 chrXV 412938 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.26;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2312,237,0 chrXV 412945 . G C 2212 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.12;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2245,240,0 chrXV 413171 . T C 3157 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.47;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3190,333,0 chrXV 413669 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.08;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1539,162,0 chrXV 413773 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.60;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2526,273,0 chrXV 413792 . T C 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.671;QD=20.52;ReadPosRankSum=1.638;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2331,240,0 chrXV 414198 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=5.260;HaplotypeScore=10.4276;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.528;QD=23.69;ReadPosRankSum=1.708;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3340,346,0 chrXV 414403 . G C 3047 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.6890;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.40;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,131:136:99:3080,333,0 chrXV 414442 . G T 3019 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.05;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3052,312,0 chrXV 414454 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.51;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3066,324,0 chrXV 415035 . A C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=168;Dels=0.00;FS=4.046;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.283;QD=24.07;ReadPosRankSum=1.711;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:4043,429,0 chrXV 415167 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.42;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3699,376,0 chrXV 415283 . C A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8675;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.43;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3885,394,0 chrXV 415299 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.195;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.938;QD=22.26;ReadPosRankSum=1.708;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3261,345,0 chrXV 415373 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=25.54;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3474,358,0 chrXV 415419 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=133;Dels=0.00;FS=10.274;HaplotypeScore=6.6129;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.492;QD=25.10;ReadPosRankSum=2.856;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3338,354,0 chrXV 415455 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=23.76;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3050,315,0 chrXV 415503 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=123;Dels=0.00;FS=3.039;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.010;QD=22.63;ReadPosRankSum=2.390;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2817,303,0 chrXV 415560 . G T 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4404;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;MQRankSum=-0.104;QD=19.31;ReadPosRankSum=1.525;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2292,234,0 chrXV 415569 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.1333;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;MQRankSum=0.053;QD=16.89;ReadPosRankSum=1.679;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:1992,213,0 chrXV 415593 . C T 1605 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=13.72;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1638,168,0 chrXV 415599 . T C 1615 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=14.42;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1648,174,0 chrXV 415601 . G A 1654 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=14.64;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1687,177,0 chrXV 415659 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=19.52;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2161,222,0 chrXV 415689 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.88;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2396,255,0 chrXV 415710 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=3.050;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.095;QD=20.61;ReadPosRankSum=2.405;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2280,243,0 chrXV 415728 . T C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=119;Dels=0.00;FS=6.099;HaplotypeScore=8.2334;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.675;QD=19.61;ReadPosRankSum=2.821;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2367,252,0 chrXV 415842 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=24.41;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2743,279,0 chrXV 415943 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=24.22;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2697,273,0 chrXV 416019 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.34;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1480,159,0 chrXV 416056 . T A 1373 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=23.67;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1406,144,0 chrXV 416118 . T C 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=19.76;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1179,126,0 chrXV 416122 . T G 1144 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=21.19;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1177,126,0 chrXV 416125 . G C 1073 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=20.25;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1106,117,0 chrXV 416158 . G A 437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.871;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.790;QD=14.57;ReadPosRankSum=0.291;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:51:470,51,0 chrXV 416444 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.65;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2375,243,0 chrXV 416506 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=82;Dels=0.00;FS=3.040;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.887;QD=23.54;ReadPosRankSum=2.360;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1963,207,0 chrXV 416605 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2575,273,0 chrXV 416779 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.50;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2958,324,0 chrXV 416880 . T C 4121.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8441;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.24;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4121,438,0 chrXV 416915 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3736;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.63;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4360,448,0 chrXV 417133 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.4507;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.125;QD=23.52;ReadPosRankSum=1.693;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4210,445,0 chrXV 417236 . G A 4823.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.07;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4823,496,0 chrXV 417481 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=10.5886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.888;QD=26.39;ReadPosRankSum=1.689;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4223,442,0 chrXV 417628 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.140;QD=22.23;ReadPosRankSum=1.695;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4134,436,0 chrXV 417693 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.48;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3733,396,0 chrXV 417733 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=5.127;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.049;QD=24.29;ReadPosRankSum=1.683;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3425,363,0 chrXV 417792 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.32;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3311,340,0 chrXV 417801 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.03;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.37;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3048,327,0 chrXV 417871 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=110;Dels=0.00;FS=5.794;HaplotypeScore=12.9210;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.936;QD=22.51;ReadPosRankSum=2.918;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2509,261,0 chrXV 418052 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.61;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2919,309,0 chrXV 418066 . A C 2789 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=529.6465;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.35;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2822,291,0 chrXV 418252 . C A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=25.45;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3868,394,0 chrXV 418384 . A C 2198 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.86;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2231,237,0 chrXV 418470 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.63;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2324,240,0 chrXV 418511 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.810;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.487;QD=22.38;ReadPosRankSum=1.671;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2584,273,0 chrXV 418530 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.55;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2576,264,0 chrXV 418885 . T A 2973 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.77;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3006,312,0 chrXV 418912 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.28;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2617,264,0 chrXV 419065 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.65;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3159,333,0 chrXV 419095 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.6386;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.82;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2653,270,0 chrXV 419347 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=139;Dels=0.00;FS=2.581;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;MQRankSum=0.993;QD=17.63;ReadPosRankSum=2.950;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2483,261,0 chrXV 419359 . T C 2513 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=16.21;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2546,267,0 chrXV 419365 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=16.51;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2625,264,0 chrXV 419377 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.594;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=-0.114;QD=15.05;ReadPosRankSum=1.711;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2547,270,0 chrXV 419404 . A T 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=-0.039;QD=15.29;ReadPosRankSum=1.713;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2755,282,0 chrXV 419419 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7744;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=15.29;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2617,279,0 chrXV 419521 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8637;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=25.35;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4258,439,0 chrXV 419928 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.14;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3871,391,0 chrXV 420061 . A T 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=203;Dels=0.00;FS=3.008;HaplotypeScore=12.8975;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.538;QD=23.61;ReadPosRankSum=2.425;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4793,496,0 chrXV 420114 . T G 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.572;QD=23.48;ReadPosRankSum=1.715;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4719,499,0 chrXV 420184 . T C 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=252;Dels=0.00;FS=2.573;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.779;QD=23.40;ReadPosRankSum=2.972;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5898,631,0 chrXV 420262 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4499,463,0 chrXV 420334 . T C 5940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=253;Dels=0.00;FS=3.680;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.595;QD=23.48;ReadPosRankSum=1.691;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5940,634,0 chrXV 420367 . C T 6461.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=9.1652;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.75;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6461,658,0 chrXV 420715 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3119,330,0 chrXV 420844 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=114;Dels=0.00;FS=9.881;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.469;QD=23.35;ReadPosRankSum=2.937;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,109:114:99:2695,291,0 chrXV 420889 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=4.611;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.768;QD=24.79;ReadPosRankSum=1.706;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3297,357,0 chrXV 421051 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.0939;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.39;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4094,421,0 chrXV 421339 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=202;Dels=0.00;FS=6.081;HaplotypeScore=19.3484;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.784;QD=20.02;ReadPosRankSum=2.332;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4044,447,0 chrXV 421402 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.52;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3801,411,0 chrXV 421530 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.58;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3772,397,0 chrXV 421685 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1973;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.314;QD=22.94;ReadPosRankSum=1.686;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3418,360,0 chrXV 421698 . C G 3065 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.71;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3098,324,0 chrXV 421788 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.77;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2885,303,0 chrXV 421830 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.82;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2892,315,0 chrXV 421850 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.46;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2458,261,0 chrXV 421884 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.38;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2107,222,0 chrXV 422015 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=24.77;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1990,210,0 chrXV 422038 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=22.01;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1838,192,0 chrXV 422213 . G A 81.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;DP=68;Dels=0.00;FS=2.440;HaplotypeScore=121.7370;MLEAC=1;MLEAF=0.500;MQ=35.31;MQ0=0;MQRankSum=-2.854;QD=1.19;ReadPosRankSum=2.802;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:4,64:68:89:111,0,89 chrXV 422245 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=111;Dels=0.00;FS=5.596;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;MQRankSum=-2.173;QD=13.14;ReadPosRankSum=2.428;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1492,159,0 chrXV 422248 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=13.35;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1541,165,0 chrXV 422316 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.95;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2513,255,0 chrXV 422344 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.21;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3109,318,0 chrXV 422464 . A C 2792 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=25.38;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2825,297,0 chrXV 422665 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.568;QD=19.83;ReadPosRankSum=1.647;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2452,258,0 chrXV 422667 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.10;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2401,261,0 chrXV 422905 . A G 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.233;QD=23.18;ReadPosRankSum=1.663;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4659,504,0 chrXV 423001 . A C 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.713;QD=23.67;ReadPosRankSum=1.675;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4332,448,0 chrXV 423064 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=190;Dels=0.00;FS=9.089;HaplotypeScore=20.0478;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.898;QD=21.03;ReadPosRankSum=2.423;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,185:190:99:3996,435,0 chrXV 423361 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.1186;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.74;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4362,460,0 chrXV 423370 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.73;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3900,414,0 chrXV 423589 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.067;QD=21.79;ReadPosRankSum=1.687;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3355,357,0 chrXV 423598 . A C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=155;Dels=0.00;FS=6.107;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=0.562;QD=21.14;ReadPosRankSum=2.955;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3277,351,0 chrXV 423805 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.10;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2973,318,0 chrXV 423829 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=119;Dels=0.00;FS=2.933;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.230;QD=22.50;ReadPosRankSum=2.366;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2711,291,0 chrXV 424102 . A G 3088 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.75;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3121,330,0 chrXV 424140 . G C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.23;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3709,396,0 chrXV 424216 . A C 5167.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.72;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5167,558,0 chrXV 424297 . T A 5688.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.06;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5688,589,0 chrXV 424341 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.8913;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.205;QD=21.86;ReadPosRankSum=1.676;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4088,447,0 chrXV 424523 . G T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.92;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3553,384,0 chrXV 424582 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=7.583;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.747;QD=22.98;ReadPosRankSum=2.388;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2791,291,0 chrXV 424606 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.73;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2442,258,0 chrXV 424705 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.16;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2701,279,0 chrXV 424779 . G C 2502 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.77;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2535,267,0 chrXV 424815 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=93.5735;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=22.76;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2628,288,0 chrXV 424847 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.39;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2520,270,0 chrXV 424870 . G C 2410 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=20.60;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2443,261,0 chrXV 424894 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=21.62;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2325,246,0 chrXV 424963 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=24.95;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3418,369,0 chrXV 425041 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=-0.221;QD=22.69;ReadPosRankSum=1.616;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3403,363,0 chrXV 425090 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=22.17;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2782,288,0 chrXV 425092 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=22.22;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2744,288,0 chrXV 425121 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=18.86;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2485,270,0 chrXV 425127 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=19.93;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2624,270,0 chrXV 425151 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;MQRankSum=-1.732;QD=18.17;ReadPosRankSum=1.707;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2504,264,0 chrXV 425184 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=19.55;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2614,270,0 chrXV 425185 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=19.02;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2562,270,0 chrXV 425221 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=15.37;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2492,270,0 chrXV 425229 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=15.77;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2541,276,0 chrXV 425239 . T A 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-0.918;QD=16.81;ReadPosRankSum=1.711;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2824,300,0 chrXV 425281 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=18.86;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3357,351,0 chrXV 425287 . C G 3058 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=18.99;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3091,333,0 chrXV 425464 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.1803;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.94;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4061,429,0 chrXV 425503 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.2312;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.620;QD=21.85;ReadPosRankSum=1.689;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3562,387,0 chrXV 425669 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3520,355,0 chrXV 425800 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4429,474,0 chrXV 425872 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3879,403,0 chrXV 425929 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8398;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.34;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4409,457,0 chrXV 426333 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.68;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1514,162,0 chrXV 426355 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.70;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1479,156,0 chrXV 426558 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.82;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1334,138,0 chrXV 426621 . G C 782 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=17.8448;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=8.69;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:90:90:815,90,0 chrXV 426759 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.91;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3039,309,0 chrXV 426767 . G C 2740 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.62;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2773,297,0 chrXV 426787 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.02;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2808,300,0 chrXV 426838 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.307;QD=24.74;ReadPosRankSum=0.983;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4230,411,0 chrXV 427159 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.71;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4173,424,0 chrXV 427268 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=13.8090;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.42;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4216,447,0 chrXV 427369 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.04;FS=0.000;HaplotypeScore=32.8976;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.02;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3256,345,0 chrXV 427406 . T C 2601 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.56;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2634,276,0 chrXV 427407 . A C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=135;Dels=0.02;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.053;QD=18.94;ReadPosRankSum=1.705;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2590,276,0 chrXV 427559 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.96;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4517,475,0 chrXV 427668 . C G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.16;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3286,354,0 chrXV 427697 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.61;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4047,403,0 chrXV 427713 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=22.21;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4086,424,0 chrXV 427884 . T G 1928 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-5.050;DP=181;Dels=0.01;FS=2.712;HaplotypeScore=60.1860;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;MQRankSum=1.147;QD=10.65;ReadPosRankSum=-1.987;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:28,152:180:99:1961,219,0 chrXV 427887 . A G 1595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=9.320;HaplotypeScore=60.1860;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.448;QD=9.33;ReadPosRankSum=1.671;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,170:171:99:1628,180,0 chrXV 427890 . T G 1298 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=59.3973;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=7.96;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1331,147,0 chrXV 427896 . T G 734 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.8460;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=5.17;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:87:767,87,0 chrXV 427902 . A G 257.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=1;MLEAF=0.500;MQ=30.91;MQ0=0;MQRankSum=-0.311;QD=2.07;ReadPosRankSum=-4.611;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:32,92:124:99:287,0,302 chrXV 427905 . T A 551 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=15.9442;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-0.440;QD=4.92;ReadPosRankSum=2.936;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:3,107:112:66:584,66,0 chrXV 427911 . G T 319.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.307;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=29.8497;MLEAC=1;MLEAF=0.500;MQ=30.26;MQ0=0;MQRankSum=-0.255;QD=2.87;ReadPosRankSum=4.864;SB=-4.102e+01 GT:AD:DP:GQ:PL 0/1:20,26:111:58:349,0,58 chrXV 427914 . G T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.672;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=28.9028;MLEAC=1;MLEAF=0.500;MQ=30.38;MQ0=0;MQRankSum=-2.259;QD=0.42;ReadPosRankSum=-2.470;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:49,52:103:73:73,0,417 chrXV 427926 . G A 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;DP=85;Dels=0.00;FS=8.465;HaplotypeScore=22.6507;MLEAC=1;MLEAF=0.500;MQ=32.29;MQ0=0;MQRankSum=2.360;QD=2.16;ReadPosRankSum=-1.595;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:42,43:85:99:214,0,341 chrXV 427929 . A G 195.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.767;DP=86;Dels=0.01;FS=5.728;HaplotypeScore=31.0573;MLEAC=1;MLEAF=0.500;MQ=32.74;MQ0=0;MQRankSum=-0.622;QD=2.27;ReadPosRankSum=-1.080;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:46,39:85:99:225,0,288 chrXV 427932 . A G 204.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.137;DP=91;Dels=0.01;FS=3.790;HaplotypeScore=47.2397;MLEAC=1;MLEAF=0.500;MQ=33.25;MQ0=0;MQRankSum=0.105;QD=2.24;ReadPosRankSum=-3.845;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:47,43:90:99:234,0,296 chrXV 427941 . A G 462.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;DP=122;Dels=0.00;FS=11.497;HaplotypeScore=59.1826;MLEAC=1;MLEAF=0.500;MQ=35.20;MQ0=0;MQRankSum=2.648;QD=3.79;ReadPosRankSum=3.102;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:20,102:122:99:492,0,213 chrXV 427944 . A G 490.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.007;DP=128;Dels=0.00;FS=11.420;HaplotypeScore=18.2298;MLEAC=1;MLEAF=0.500;MQ=35.43;MQ0=0;MQRankSum=3.313;QD=3.83;ReadPosRankSum=5.067;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:20,108:128:99:520,0,243 chrXV 427962 . A T 424.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=192;Dels=0.00;FS=16.829;HaplotypeScore=30.8604;MLEAC=1;MLEAF=0.500;MQ=37.56;MQ0=0;MQRankSum=4.219;QD=2.21;ReadPosRankSum=3.190;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:100,88:192:99:454,0,326 chrXV 428004 . A G 252.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.668;DP=160;Dels=0.00;FS=3.876;HaplotypeScore=55.2325;MLEAC=1;MLEAF=0.500;MQ=37.19;MQ0=1;MQRankSum=9.173;QD=1.58;ReadPosRankSum=3.346;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:67,93:160:99:282,0,359 chrXV 428007 . A G 231.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270;DP=157;Dels=0.00;FS=7.538;HaplotypeScore=70.3496;MLEAC=1;MLEAF=0.500;MQ=37.21;MQ0=1;MQRankSum=9.233;QD=1.47;ReadPosRankSum=1.069;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:68,89:157:99:261,0,400 chrXV 428010 . G A 419.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.233;DP=154;Dels=0.03;FS=1.089;HaplotypeScore=84.6025;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=1;MQRankSum=-8.766;QD=2.72;ReadPosRankSum=0.893;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:82,65:150:99:449,0,275 chrXV 428016 . A G 511.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.006;DP=153;Dels=0.00;FS=1.903;HaplotypeScore=100.8876;MLEAC=1;MLEAF=0.500;MQ=37.47;MQ0=0;MQRankSum=-5.723;QD=3.34;ReadPosRankSum=1.920;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:50,100:153:99:541,0,245 chrXV 428019 . A G 598.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DP=158;Dels=0.00;FS=0.831;HaplotypeScore=104.1608;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=0;MQRankSum=-6.512;QD=3.78;ReadPosRankSum=3.608;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:45,112:158:99:628,0,225 chrXV 428022 . A G 634.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=166;Dels=0.00;FS=34.309;HaplotypeScore=79.1014;MLEAC=1;MLEAF=0.500;MQ=38.62;MQ0=0;MQRankSum=-6.355;QD=3.82;ReadPosRankSum=3.624;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:55,110:166:99:664,0,243 chrXV 428028 . A G 1092 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.103;DP=176;Dels=0.00;FS=2.538;HaplotypeScore=49.6582;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-2.747;QD=6.20;ReadPosRankSum=2.879;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:14,162:176:99:1125,129,0 chrXV 428241 . G C 5872.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=13.3702;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.83;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:5872,639,0 chrXV 428453 . G A 6184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.2117;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.253;QD=24.35;ReadPosRankSum=-1.184;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:6184,606,0 chrXV 429156 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=201;Dels=0.00;FS=9.229;HaplotypeScore=12.7855;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.201;QD=23.44;ReadPosRankSum=2.955;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4712,510,0 chrXV 429210 . T C 5164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=3.654;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.101;QD=22.65;ReadPosRankSum=1.701;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:5164,558,0 chrXV 429219 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.15;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4850,519,0 chrXV 429222 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=222;Dels=0.00;FS=15.281;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.528;QD=21.73;ReadPosRankSum=3.413;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:4824,517,0 chrXV 429552 . C T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.05;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4748,487,0 chrXV 429834 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.29;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4047,415,0 chrXV 429969 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.426;QD=24.85;ReadPosRankSum=1.704;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3115,327,0 chrXV 430481 . G A 5843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=20.3534;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.332;QD=24.55;ReadPosRankSum=-0.037;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:1,234:238:99:5843,581,0 chrXV 430964 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=2.891;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.037;QD=24.25;ReadPosRankSum=2.373;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4681,501,0 chrXV 431264 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.61;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3956,417,0 chrXV 431558 . G T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.43;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3789,394,0 chrXV 431700 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.78;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3321,354,0 chrXV 431849 . G C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.04;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3606,381,0 chrXV 432164 . G T 3084 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.67;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3117,319,0 chrXV 432275 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3281,342,0 chrXV 432347 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.79;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3481,358,0 chrXV 432461 . T C 2869 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2902,306,0 chrXV 432563 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.475;QD=24.60;ReadPosRankSum=1.704;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3084,318,0 chrXV 432630 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2722,285,0 chrXV 432666 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2762,282,0 chrXV 432698 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.698;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.206;QD=24.40;ReadPosRankSum=1.703;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2937,324,0 chrXV 432763 . G C 2879 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.60;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2912,309,0 chrXV 432824 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.575;QD=23.25;ReadPosRankSum=1.669;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2590,276,0 chrXV 433405 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.85;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3429,369,0 chrXV 433431 . T A 3166 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.98;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3199,328,0 chrXV 433548 . A T 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9947;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.078;QD=22.32;ReadPosRankSum=1.701;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2510,267,0 chrXV 433573 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=2.889;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-1.663;QD=18.14;ReadPosRankSum=1.587;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1793,189,0 chrXV 433580 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.16;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1646,171,0 chrXV 433685 . A T 1963 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.94;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1996,210,0 chrXV 433973 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.31;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3502,363,0 chrXV 433993 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.99;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3632,370,0 chrXV 434336 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.07;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3715,393,0 chrXV 434999 . A T 1999 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.98;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2032,216,0 chrXV 435038 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.840;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.565;QD=23.66;ReadPosRankSum=1.657;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2210,234,0 chrXV 435055 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.795;QD=24.44;ReadPosRankSum=1.651;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2110,222,0 chrXV 435177 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.878;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.105;QD=22.04;ReadPosRankSum=1.678;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,126:131:99:2920,306,0 chrXV 435179 . A T 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.01;FS=3.996;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.001;QD=22.81;ReadPosRankSum=1.705;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2976,303,0 chrXV 435266 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.989;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.892;QD=25.14;ReadPosRankSum=2.374;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2497,258,0 chrXV 435528 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.89;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1773,189,0 chrXV 435862 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.87;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2301,237,0 chrXV 436196 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.10;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2493,255,0 chrXV 436490 . C G 2149 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2182,234,0 chrXV 436610 . G C 1819 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.93;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1852,201,0 chrXV 436826 . T C 983 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.37;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1016,108,0 chrXV 436846 . C A,T 61.52 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=43.4581;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.68;MQ0=0;QD=1.23;SB=-3.065e+02 GT:AD:DP:GQ:PL 1/2:0,4,46:50:37:121,46,37,75,0,69 chrXV 436910 . A G 1291 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.17;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1324,141,0 chrXV 436950 . A G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.105;QD=25.30;ReadPosRankSum=-1.522;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1728,186,0 chrXV 437000 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.87;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2051,222,0 chrXV 437034 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6609;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=26.23;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2394,258,0 chrXV 437180 . A C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.537;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.732;QD=23.58;ReadPosRankSum=1.707;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3325,348,0 chrXV 437320 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=130;Dels=0.00;FS=6.043;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.291;QD=22.55;ReadPosRankSum=2.803;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:2964,315,0 chrXV 437324 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=3.219;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.406;QD=22.42;ReadPosRankSum=1.705;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2925,309,0 chrXV 437491 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.67;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2655,279,0 chrXV 438026 . T A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.07;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4888,502,0 chrXV 438117 . A G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.732;QD=25.09;ReadPosRankSum=1.712;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4315,454,0 chrXV 438148 . T G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8147;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.03;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3869,411,0 chrXV 438163 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=15.827;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.768;QD=19.80;ReadPosRankSum=2.417;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3043,336,0 chrXV 438188 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.91;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2542,261,0 chrXV 438262 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.134;QD=20.66;ReadPosRankSum=2.394;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1851,201,0 chrXV 438541 . G C 1970 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.73;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2003,213,0 chrXV 438561 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.06;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2030,210,0 chrXV 438605 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.33;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2063,210,0 chrXV 438791 . C T 52.97 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=0.40;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:9:85,9,0 chrXV 438827 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=14.5504;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.28;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3532,361,0 chrXV 438841 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.006;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.273;QD=19.79;ReadPosRankSum=1.711;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3305,354,0 chrXV 438948 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.05;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3122,333,0 chrXV 438975 . A T 3096 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.27;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3129,321,0 chrXV 439047 . A T 2603 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.02;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2636,285,0 chrXV 439078 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.77;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2907,297,0 chrXV 439785 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3724,393,0 chrXV 440015 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=3.492;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.957;QD=22.23;ReadPosRankSum=1.684;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3234,351,0 chrXV 440365 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.21;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2476,261,0 chrXV 440524 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4808;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.914;QD=23.83;ReadPosRankSum=1.612;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3431,357,0 chrXV 440656 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.38;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4462,457,0 chrXV 440747 . A C 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.337;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.862;QD=23.86;ReadPosRankSum=1.665;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4939,514,0 chrXV 440825 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.1114;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.62;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4016,429,0 chrXV 440873 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9574;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.07;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3885,411,0 chrXV 440883 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.351;QD=21.38;ReadPosRankSum=1.085;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3891,385,0 chrXV 441176 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.54;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3296,342,0 chrXV 441214 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.374;HaplotypeScore=8.7450;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.100;QD=19.66;ReadPosRankSum=1.707;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2766,297,0 chrXV 441222 . G C 2758 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.28;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2791,294,0 chrXV 441341 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0810;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.89;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3186,339,0 chrXV 441463 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=7.339;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.292;QD=23.56;ReadPosRankSum=2.414;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3322,351,0 chrXV 441487 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3834;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.74;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3585,378,0 chrXV 442427 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3761,388,0 chrXV 442592 . A T 2033 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2066,210,0 chrXV 442681 . A T 2818 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2851,306,0 chrXV 442786 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.463;QD=22.57;ReadPosRankSum=2.385;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3476,372,0 chrXV 442914 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4016,409,0 chrXV 443031 . T C 5080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=3.136;HaplotypeScore=14.2451;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.099;QD=24.19;ReadPosRankSum=1.699;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:5080,535,0 chrXV 443071 . G C 4598.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.70;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4598,487,0 chrXV 443155 . T G 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.313;QD=22.98;ReadPosRankSum=1.714;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4390,474,0 chrXV 443357 . T G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=4.483;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.424;QD=20.07;ReadPosRankSum=1.708;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3004,321,0 chrXV 443358 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=151;Dels=0.00;FS=8.868;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.602;QD=19.60;ReadPosRankSum=2.318;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:2992,321,0 chrXV 443424 . G T 3050 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.0775;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.79;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3083,313,0 chrXV 443566 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=25.15;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2598,270,0 chrXV 443587 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=24.30;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2220,231,0 chrXV 443601 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.85;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1998,213,0 chrXV 443634 . A C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.948;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.376;QD=20.39;ReadPosRankSum=2.398;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1970,213,0 chrXV 443686 . C G 2687 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.78;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2720,288,0 chrXV 443717 . T A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=3.032;HaplotypeScore=10.0237;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.987;QD=24.13;ReadPosRankSum=2.383;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2711,297,0 chrXV 443793 . C A 2330 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=18.94;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2363,276,0 chrXV 443794 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.290;QD=18.89;ReadPosRankSum=2.370;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2357,276,0 chrXV 443890 . A C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=6.780;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.220;QD=24.59;ReadPosRankSum=2.391;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3131,324,0 chrXV 444024 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.97;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4387,451,0 chrXV 444178 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=175;Dels=0.00;FS=6.939;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.919;QD=25.70;ReadPosRankSum=2.393;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4498,469,0 chrXV 444289 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.32;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4757,522,0 chrXV 445216 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:5125,538,0 chrXV 445648 . C T 4841.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.8651;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.05;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4841,511,0 chrXV 445941 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2029,210,0 chrXV 446451 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.96;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4069,435,0 chrXV 446484 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.44;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3641,376,0 chrXV 446992 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.20;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2980,303,0 chrXV 447858 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=3.331;HaplotypeScore=11.8059;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.683;QD=24.87;ReadPosRankSum=1.716;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5272,562,0 chrXV 447942 . C T 6777.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=18.5535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.12;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6777,712,0 chrXV 448221 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=5.221;HaplotypeScore=15.9145;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.337;QD=20.76;ReadPosRankSum=1.553;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4049,444,0 chrXV 448985 . A G 1233 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1266,135,0 chrXV 449105 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.86;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2634,267,0 chrXV 449205 . A C 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.469;QD=22.87;ReadPosRankSum=1.657;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2183,234,0 chrXV 449353 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.66;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3087,324,0 chrXV 449724 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3925,415,0 chrXV 449765 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2485;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4003,450,0 chrXV 449867 . A C 2978 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3011,315,0 chrXV 450043 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.42;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3989,409,0 chrXV 450086 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.485;QD=24.62;ReadPosRankSum=1.683;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3472,369,0 chrXV 450216 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3619,373,0 chrXV 450301 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.19;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3320,354,0 chrXV 450315 . A C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5825;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.137;QD=18.19;ReadPosRankSum=1.622;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3457,369,0 chrXV 450461 . G A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4756;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.50;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4590,478,0 chrXV 450650 . C T 4642.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6007;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.56;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4642,498,0 chrXV 450923 . T C 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=5.430;HaplotypeScore=5.1790;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.392;QD=9.92;ReadPosRankSum=1.645;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:2017,213,0 chrXV 450930 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7809;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=11.34;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2255,228,0 chrXV 451145 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=8.280;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.107;QD=19.96;ReadPosRankSum=2.364;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3453,369,0 chrXV 451154 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=3.943;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.433;QD=20.17;ReadPosRankSum=1.693;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3550,372,0 chrXV 451172 . A C 3090 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8394;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.28;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3123,333,0 chrXV 451367 . C A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=25.14;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3947,403,0 chrXV 451509 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.35;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1924,204,0 chrXV 451606 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.910;QD=21.21;ReadPosRankSum=2.394;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1921,201,0 chrXV 452290 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5634;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.21;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4294,439,0 chrXV 452446 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.427;QD=24.27;ReadPosRankSum=1.708;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3567,378,0 chrXV 452881 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.01;FS=3.045;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.532;QD=23.86;ReadPosRankSum=1.705;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3111,324,0 chrXV 453019 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6529;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.78;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3353,351,0 chrXV 453055 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.861;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.223;QD=21.39;ReadPosRankSum=1.711;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3486,369,0 chrXV 453067 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.64;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3116,330,0 chrXV 453073 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.03;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3117,318,0 chrXV 453417 . C G 2650 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.20;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2683,288,0 chrXV 453707 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.7356;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.01;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3798,402,0 chrXV 453762 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.36;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3272,342,0 chrXV 453974 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.475;QD=24.79;ReadPosRankSum=1.653;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4338,462,0 chrXV 454256 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.41;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3990,412,0 chrXV 454325 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.90;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3985,432,0 chrXV 454559 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5185;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.15;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3981,418,0 chrXV 454610 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.91;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4805,505,0 chrXV 454944 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.627;HaplotypeScore=13.1028;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.334;QD=25.42;ReadPosRankSum=1.685;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3788,405,0 chrXV 455108 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2789;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.84;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3800,405,0 chrXV 455183 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.2695;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3169,339,0 chrXV 455286 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.73;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3795,385,0 chrXV 455342 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=25.50;ReadPosRankSum=1.684;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3697,387,0 chrXV 455594 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.559;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.939;QD=23.06;ReadPosRankSum=1.673;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2823,294,0 chrXV 456978 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.12;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3168,325,0 chrXV 457470 . A G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.2113;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.650;QD=21.03;ReadPosRankSum=1.715;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4375,465,0 chrXV 457531 . T C 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=239;Dels=0.00;FS=13.460;HaplotypeScore=14.8554;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.242;QD=22.03;ReadPosRankSum=2.928;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,234:239:99:5264,550,0 chrXV 457599 . T C 6291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=276;Dels=0.00;FS=4.437;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.674;QD=22.79;ReadPosRankSum=1.694;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6291,670,0 chrXV 458312 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.46;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3526,361,0 chrXV 458453 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3857,391,0 chrXV 458617 . T G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3862,417,0 chrXV 458665 . G T 2899 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2932,295,0 chrXV 458781 . T A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3515,361,0 chrXV 458852 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2167,222,0 chrXV 458886 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.279;QD=24.90;ReadPosRankSum=1.695;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2374,249,0 chrXV 459134 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.06;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3215,333,0 chrXV 459550 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9388;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.372;QD=21.70;ReadPosRankSum=1.714;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4145,433,0 chrXV 459560 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.16;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3979,406,0 chrXV 459840 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.35;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3206,328,0 chrXV 459980 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.11;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3813,391,0 chrXV 460430 . A T 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=203;Dels=0.00;FS=12.259;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.193;QD=25.94;ReadPosRankSum=3.408;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:4,199:203:99:5265,541,0 chrXV 460848 . T A 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.112;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.027;QD=23.73;ReadPosRankSum=1.712;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4081,418,0 chrXV 460871 . A C 4637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.8706;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.806;QD=22.84;ReadPosRankSum=1.663;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4637,498,0 chrXV 461164 . G T 2801 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2834,288,0 chrXV 461250 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2394,246,0 chrXV 461295 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1943,201,0 chrXV 461411 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=25.76;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2094,225,0 chrXV 461434 . A G 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=5.643;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.669;QD=24.35;ReadPosRankSum=1.614;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2176,234,0 chrXV 461473 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=24.12;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2421,249,0 chrXV 461644 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.144;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-0.394;QD=18.62;ReadPosRankSum=1.706;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2491,261,0 chrXV 461659 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=7.599;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-0.789;QD=15.27;ReadPosRankSum=2.317;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2293,240,0 chrXV 461660 . T C 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.808;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=-1.197;QD=14.40;ReadPosRankSum=1.686;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2178,237,0 chrXV 461683 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=13.53;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2293,240,0 chrXV 461696 . G C 2278 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7920;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=13.48;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2311,240,0 chrXV 461760 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=163;Dels=0.00;FS=6.097;HaplotypeScore=8.9088;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.068;QD=20.30;ReadPosRankSum=2.945;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3309,348,0 chrXV 461814 . T C 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=166;Dels=0.00;FS=8.026;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.274;QD=23.87;ReadPosRankSum=3.779;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:5,161:166:99:3962,420,0 chrXV 462083 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.2671;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.47;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3369,369,0 chrXV 462320 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-2.169;QD=25.26;ReadPosRankSum=2.369;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4647,496,0 chrXV 462566 . A C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.192;QD=21.97;ReadPosRankSum=1.708;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3197,345,0 chrXV 462586 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=23.21;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2957,301,0 chrXV 462625 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=21.91;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1895,195,0 chrXV 462628 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=23.94;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2020,204,0 chrXV 462683 . T A 874 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.62;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:93:907,93,0 chrXV 462964 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=25.84;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3902,403,0 chrXV 463240 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.075;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.732;QD=21.91;ReadPosRankSum=1.672;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2574,273,0 chrXV 463343 . T A 2120 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.50;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2153,219,0 chrXV 463455 . T A 1829 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.58;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1862,192,0 chrXV 463462 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.51;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1858,198,0 chrXV 463640 . T A 2259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.157;QD=20.54;ReadPosRankSum=1.701;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2292,231,0 chrXV 463641 . G A 2242 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=20.20;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2275,231,0 chrXV 463642 . G A 2256 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.14;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2289,234,0 chrXV 463787 . A C 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=2.800;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.210;QD=23.66;ReadPosRankSum=2.409;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2896,303,0 chrXV 463865 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=25.53;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2765,285,0 chrXV 463933 . G T 2481 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.32;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2514,267,0 chrXV 464113 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.36;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1860,198,0 chrXV 464158 . C G 1752 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=25.76;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1785,186,0 chrXV 464215 . A C 871 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=21.77;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:904,96,0 chrXV 464237 . T C 501 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=14.31;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:534,60,0 chrXV 464238 . A G 555 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=15.86;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:588,60,0 chrXV 464244 . G T 511 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=12.46;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:57:544,57,0 chrXV 464324 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=26.18;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1918,195,0 chrXV 464562 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.18;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1164,126,0 chrXV 464863 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.89;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3019,312,0 chrXV 465127 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.291;QD=25.16;ReadPosRankSum=2.412;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3321,351,0 chrXV 465226 . C A 5000.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.7137;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.91;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5000,517,0 chrXV 465313 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=196;Dels=0.00;FS=9.863;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.624;QD=23.30;ReadPosRankSum=2.882;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4566,475,0 chrXV 465319 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.77;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4731,487,0 chrXV 465398 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.94;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4015,415,0 chrXV 465655 . G A 4834.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4834,519,0 chrXV 466097 . G C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.77;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3325,360,0 chrXV 466112 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6362;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.287;QD=20.37;ReadPosRankSum=1.707;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2885,303,0 chrXV 466157 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=3.001;HaplotypeScore=7.7459;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.934;QD=24.08;ReadPosRankSum=2.394;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3235,342,0 chrXV 466324 . T G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=4.125;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.536;QD=22.74;ReadPosRankSum=1.699;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2443,264,0 chrXV 466340 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.717;QD=23.78;ReadPosRankSum=1.697;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2387,246,0 chrXV 467149 . T A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.92;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3415,352,0 chrXV 467239 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3691,382,0 chrXV 467407 . A G 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=8.326;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.222;QD=24.71;ReadPosRankSum=2.413;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,198:203:99:5016,537,0 chrXV 467624 . T C 4904.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.24;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4904,534,0 chrXV 467703 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=176;Dels=0.00;FS=3.032;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.344;QD=24.77;ReadPosRankSum=2.407;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4359,462,0 chrXV 467752 . A T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.25;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4090,430,0 chrXV 467878 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.05;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2643,279,0 chrXV 467889 . G C 2745 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=7.4271;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.80;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2778,303,0 chrXV 467983 . G A 4874.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.01;FS=0.000;HaplotypeScore=34.0703;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=23.21;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4874,496,0 chrXV 468018 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.16;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4132,421,0 chrXV 468109 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=18.00;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3510,361,0 chrXV 468121 . A G 3099 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=16.57;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3132,327,0 chrXV 468133 . A G 2712 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=15.07;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2745,282,0 chrXV 468134 . T C 2642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=6.490;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;MQRankSum=-2.192;QD=14.60;ReadPosRankSum=2.422;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:2675,285,0 chrXV 468143 . A G 2534 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.8007;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=13.70;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2567,273,0 chrXV 468169 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=15.28;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:2905,303,0 chrXV 468172 . G C 2741 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;QD=14.35;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:2774,306,0 chrXV 468284 . G A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=24.56;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4544,486,0 chrXV 468336 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=158;Dels=0.00;FS=3.029;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=0.697;QD=21.47;ReadPosRankSum=2.356;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3393,363,0 chrXV 468355 . G C 2932 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=21.40;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2965,327,0 chrXV 468364 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.437;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.386;QD=20.99;ReadPosRankSum=1.682;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2950,324,0 chrXV 468391 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9485;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=22.26;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3171,333,0 chrXV 468511 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=6.407;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.959;QD=24.88;ReadPosRankSum=2.351;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3757,393,0 chrXV 468561 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3971;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.95;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2907,303,0 chrXV 468674 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=4.017;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.149;QD=22.48;ReadPosRankSum=1.672;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2663,282,0 chrXV 468739 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3192,336,0 chrXV 470004 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.92;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2729,282,0 chrXV 470034 . G T 2344 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.92;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2377,243,0 chrXV 470646 . T A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3750,399,0 chrXV 471040 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.74;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2928,309,0 chrXV 471091 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.38;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2745,297,0 chrXV 471315 . G T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.94;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3510,361,0 chrXV 471329 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=4.415;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.160;QD=22.30;ReadPosRankSum=1.664;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3434,357,0 chrXV 471799 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.251;QD=25.92;ReadPosRankSum=1.709;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3965,412,0 chrXV 471859 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4475,460,0 chrXV 472668 . C T 5433.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.0922;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.36;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5433,586,0 chrXV 472765 . A C 6864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.578;DP=289;Dels=0.00;FS=5.714;HaplotypeScore=13.5194;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.732;QD=23.75;ReadPosRankSum=0.955;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:3,285:289:99:6864,725,0 chrXV 473069 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=179;Dels=0.00;FS=2.582;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.714;QD=23.09;ReadPosRankSum=2.961;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4133,435,0 chrXV 473093 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.48;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3305,340,0 chrXV 473117 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.912;HaplotypeScore=8.5983;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.348;QD=19.63;ReadPosRankSum=2.385;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3037,330,0 chrXV 473222 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=98;Dels=0.00;FS=2.588;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.761;QD=22.21;ReadPosRankSum=2.844;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:3,94:98:99:2210,231,0 chrXV 473352 . G T 3135 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3066;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.93;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3168,330,0 chrXV 473630 . G A 5518.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.0187;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.67;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5518,556,0 chrXV 474107 . C A 4628.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.36;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4628,481,0 chrXV 474270 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.21;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3755,405,0 chrXV 474427 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.39;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2470,249,0 chrXV 474609 . A T 2498 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.25;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2531,276,0 chrXV 474686 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.60;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2301,240,0 chrXV 474687 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.666;QD=21.64;ReadPosRankSum=1.699;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2284,240,0 chrXV 475466 . T A 2411 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2444,252,0 chrXV 475524 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=4.221;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.749;QD=24.24;ReadPosRankSum=1.685;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1827,198,0 chrXV 475648 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.07;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3242,334,0 chrXV 475733 . A C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=131;Dels=0.00;FS=10.030;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.010;QD=22.11;ReadPosRankSum=2.335;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2930,315,0 chrXV 475809 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.09;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3913,406,0 chrXV 475840 . T C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=139;Dels=0.00;FS=6.925;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.458;QD=23.01;ReadPosRankSum=2.360;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3231,345,0 chrXV 475934 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.496;QD=22.88;ReadPosRankSum=1.614;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3386,360,0 chrXV 476009 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.90;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2530,267,0 chrXV 476609 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2264,234,0 chrXV 477077 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.62;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2101,225,0 chrXV 477341 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4671,490,0 chrXV 477395 . A C 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.1772;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.362;QD=23.66;ReadPosRankSum=1.682;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4873,525,0 chrXV 477773 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.639;QD=22.99;ReadPosRankSum=1.709;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3449,375,0 chrXV 478097 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.958;HaplotypeScore=8.2970;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.355;QD=23.99;ReadPosRankSum=2.373;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3128,336,0 chrXV 478184 . T A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.6047;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.64;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4718,484,0 chrXV 478679 . A G 7208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=310;Dels=0.00;FS=6.043;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.078;QD=23.25;ReadPosRankSum=2.964;SB=-4.024e+03 GT:AD:DP:GQ:PL 1/1:3,307:310:99:7208,766,0 chrXV 479265 . T A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.741;SB=1.37 GT:AD:DP:GQ:PL 1/1:1,9:10:6:57,6,0 chrXV 479299 . T C 910 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.501;QD=19.36;ReadPosRankSum=2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:99:943,105,0 chrXV 480090 . C T 7274.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=29.1123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-4.104e+03 GT:AD:DP:GQ:PL 1/1:0,347:349:99:7274,769,0 chrXV 480144 . G A 9256.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=27.5957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-4.796e+03 GT:AD:DP:GQ:PL 1/1:0,406:407:99:9256,967,0 chrXV 480673 . T C 8211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=338;Dels=0.00;FS=2.834;HaplotypeScore=19.7307;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.525;QD=24.29;ReadPosRankSum=2.369;SB=-3.703e+03 GT:AD:DP:GQ:PL 1/1:2,335:338:99:8211,862,0 chrXV 480906 . G A 7911.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=17.8784;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.27;SB=-4.440e+03 GT:AD:DP:GQ:PL 1/1:0,323:326:99:7911,829,0 chrXV 480946 . C T 6726.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6726,703,0 chrXV 481843 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.872;QD=22.99;ReadPosRankSum=1.682;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3205,342,0 chrXV 481860 . T A 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.299;QD=23.68;ReadPosRankSum=1.710;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3813,397,0 chrXV 481930 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.69;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3382,354,0 chrXV 482206 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.3304;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.39;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3731,382,0 chrXV 482608 . G A 5900.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5900,613,0 chrXV 484571 . G C 4153.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.15;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4153,441,0 chrXV 485571 . C T 4652.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.7021;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.28;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4652,481,0 chrXV 485898 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=6.296;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.770;QD=24.21;ReadPosRankSum=2.408;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4286,456,0 chrXV 485952 . C T 4857.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.81;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4857,502,0 chrXV 486511 . G C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.02;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4054,432,0 chrXV 489971 . T C 716 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:78:749,78,0 chrXV 490226 . C G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3472,378,0 chrXV 490304 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.00;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3058,318,0 chrXV 494571 . A G 5340.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.4017;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.45;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5340,576,0 chrXV 494590 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.5983;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.07;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4636,484,0 chrXV 494669 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.090;QD=20.48;ReadPosRankSum=1.714;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:3974,420,0 chrXV 494728 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0102;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.03;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4473,457,0 chrXV 495045 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.9623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.40;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4072,441,0 chrXV 495525 . A C 6548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=279;Dels=0.00;FS=2.766;HaplotypeScore=12.4549;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.787;QD=23.47;ReadPosRankSum=2.388;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:6548,691,0 chrXV 495561 . C T 6931.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.8519;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.82;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6931,721,0 chrXV 495861 . C T 6508.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6508,673,0 chrXV 495905 . T C 6616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.1110;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.047;QD=25.35;ReadPosRankSum=1.679;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:6616,691,0 chrXV 496393 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2664,270,0 chrXV 496482 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.71;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2807,294,0 chrXV 496695 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.7142;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=25.74;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4607,478,0 chrXV 496731 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.554;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.764;QD=22.90;ReadPosRankSum=1.698;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4694,493,0 chrXV 496734 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.00;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4645,481,0 chrXV 496782 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.39;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3572,375,0 chrXV 497083 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.51;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2126,222,0 chrXV 497271 . A G 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.473;QD=21.64;ReadPosRankSum=1.628;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:78:747,78,0 chrXV 497301 . C A 632 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=25.28;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:69:665,69,0 chrXV 497400 . T C 138.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.739;QD=11.51;ReadPosRankSum=0.158;SB=-2.394e+01 GT:AD:DP:GQ:PL 1/1:1,10:12:18:171,18,0 chrXV 497401 . C T 138.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=12.56;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,9:11:18:171,18,0 chrXV 497661 . A G 3134 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.48;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3167,330,0 chrXV 497758 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4318,457,0 chrXV 497904 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3737,379,0 chrXV 498007 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=196;Dels=0.00;FS=9.863;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.789;QD=23.53;ReadPosRankSum=2.892;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4612,481,0 chrXV 498202 . A G 4964.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.45;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4964,517,0 chrXV 498478 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.421;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.917;QD=23.02;ReadPosRankSum=1.703;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2772,288,0 chrXV 498482 . T C 2683 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.55;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2716,285,0 chrXV 498558 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.34;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3124,327,0 chrXV 498787 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.300;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.620;QD=24.49;ReadPosRankSum=1.620;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3070,333,0 chrXV 498862 . C A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.70;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4051,429,0 chrXV 498904 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.403;QD=25.02;ReadPosRankSum=1.692;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4303,454,0 chrXV 498994 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.81;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3223,333,0 chrXV 499054 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.42;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4169,441,0 chrXV 499060 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.18;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4218,453,0 chrXV 499140 . C A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.10;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3664,378,0 chrXV 499249 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.81;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3152,321,0 chrXV 499324 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.07;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2924,306,0 chrXV 499435 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.22;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4091,418,0 chrXV 499558 . A C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3565,378,0 chrXV 499801 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=138;Dels=0.00;FS=6.711;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.935;QD=22.55;ReadPosRankSum=2.396;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3145,348,0 chrXV 499909 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=133;Dels=0.00;FS=9.157;HaplotypeScore=12.7273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.204;QD=24.27;ReadPosRankSum=3.392;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:3262,342,0 chrXV 499981 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3517,363,0 chrXV 500068 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.484;QD=25.48;ReadPosRankSum=2.342;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:4077,430,0 chrXV 500107 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.5878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4054,441,0 chrXV 500224 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=17.2242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.281;QD=23.26;ReadPosRankSum=-0.245;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:1,190:195:99:4535,489,0 chrXV 500434 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.6109;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.38;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4441,469,0 chrXV 500575 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.29;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3284,339,0 chrXV 500665 . G A 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.175;QD=23.52;ReadPosRankSum=-1.410;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3090,312,0 chrXV 500968 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.6071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2986,309,0 chrXV 501550 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.17;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3977,406,0 chrXV 501598 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3334,345,0 chrXV 501919 . T C 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.042;QD=24.09;ReadPosRankSum=2.330;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4938,537,0 chrXV 502258 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=162;Dels=0.00;FS=4.505;HaplotypeScore=14.7618;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.307;QD=22.91;ReadPosRankSum=1.710;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3711,387,0 chrXV 502423 . A T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.79;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3616,370,0 chrXV 502474 . G C 2678 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.77;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2711,282,0 chrXV 502484 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.519;QD=20.08;ReadPosRankSum=1.705;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2643,285,0 chrXV 502590 . G A 4248.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.06;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4248,433,0 chrXV 502621 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=7.216;HaplotypeScore=8.8589;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.591;QD=24.88;ReadPosRankSum=2.388;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3981,409,0 chrXV 503533 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.26;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3299,360,0 chrXV 503561 . G C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.94;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3326,357,0 chrXV 503975 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.9977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3660,385,0 chrXV 504206 . A T 3201 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3234,339,0 chrXV 504284 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3791,405,0 chrXV 504745 . C G 2833 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.02;FS=0.000;HaplotypeScore=53.2996;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.24;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2866,303,0 chrXV 504774 . T C 2962 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.46;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2995,312,0 chrXV 504794 . A T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.95;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3314,340,0 chrXV 504874 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=15.5347;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.65;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3279,348,0 chrXV 504931 . T A 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=2.937;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.940;QD=26.08;ReadPosRankSum=2.413;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3521,358,0 chrXV 505011 . C G 2940 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7781;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.10;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2973,315,0 chrXV 505109 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.985;HaplotypeScore=11.0356;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.881;QD=23.95;ReadPosRankSum=2.420;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3975,420,0 chrXV 505164 . A T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.9850;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.62;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3668,373,0 chrXV 505269 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.43;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3172,324,0 chrXV 505308 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.09;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3269,348,0 chrXV 505358 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=2.870;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=-1.630;QD=14.82;ReadPosRankSum=2.413;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2034,219,0 chrXV 505372 . A C 1701 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=6.273;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=-2.030;QD=13.83;ReadPosRankSum=2.410;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1734,192,0 chrXV 505374 . C T 1766 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=14.72;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1799,189,0 chrXV 505376 . T C 1697 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;MQRankSum=-1.389;QD=14.02;ReadPosRankSum=1.703;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1730,189,0 chrXV 505381 . A G 1667 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;MQRankSum=-0.516;QD=12.73;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1700,177,0 chrXV 505483 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6771;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.04;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2775,282,0 chrXV 505528 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=22.29;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2842,297,0 chrXV 505541 . C G 2721 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=21.26;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2754,306,0 chrXV 505980 . T G 3006 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3039,321,0 chrXV 506101 . C A 3002 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5835;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.01;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3035,307,0 chrXV 506209 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0949;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.102;QD=23.66;ReadPosRankSum=1.681;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3251,339,0 chrXV 507053 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.34;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3137,330,0 chrXV 507079 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.50;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3228,342,0 chrXV 507805 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.98;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2656,279,0 chrXV 508131 . G A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.17;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4700,499,0 chrXV 508178 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.13;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4141,444,0 chrXV 508404 . A C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.59;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3390,360,0 chrXV 508412 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.34;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3585,384,0 chrXV 508557 . T C 5943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.9986;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.364;QD=26.30;ReadPosRankSum=1.671;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5943,646,0 chrXV 508682 . T C 7124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=292;Dels=0.00;FS=2.820;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.189;QD=24.40;ReadPosRankSum=2.391;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:7124,757,0 chrXV 508701 . A T 7143.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.98;SB=-3.809e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7143,730,0 chrXV 508802 . T C 5968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=265;Dels=0.00;FS=5.012;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.492;QD=22.52;ReadPosRankSum=1.719;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,259:265:99:5968,646,0 chrXV 508929 . T C 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=19.0871;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.808;QD=23.05;ReadPosRankSum=0.219;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4587,492,0 chrXV 509182 . T C 5910.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.22;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5910,643,0 chrXV 509207 . T C 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=220;Dels=0.00;FS=5.950;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.767;QD=23.88;ReadPosRankSum=2.968;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:5253,553,0 chrXV 509248 . T A 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.9143;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.503;QD=23.22;ReadPosRankSum=1.715;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4713,507,0 chrXV 509620 . T C 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=3.100;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.177;QD=24.08;ReadPosRankSum=1.714;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4744,487,0 chrXV 509802 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=170;Dels=0.00;FS=4.824;HaplotypeScore=13.2847;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.390;QD=19.71;ReadPosRankSum=3.012;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:4,164:170:99:3350,363,0 chrXV 509804 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=11.8167;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.76;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3340,360,0 chrXV 509969 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.606;QD=24.43;ReadPosRankSum=1.710;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3933,415,0 chrXV 510299 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3036,315,0 chrXV 510586 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3746,388,0 chrXV 510684 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=7.8719;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.075;QD=22.53;ReadPosRankSum=1.234;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3965,392,0 chrXV 510696 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7906;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.71;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3906,397,0 chrXV 511142 . G A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4566,475,0 chrXV 511243 . T A 3207 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.76;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3240,328,0 chrXV 511443 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.135;QD=24.27;ReadPosRankSum=1.678;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3140,330,0 chrXV 511893 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.97;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4493,466,0 chrXV 511995 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.332;QD=25.03;ReadPosRankSum=1.713;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4555,478,0 chrXV 512025 . C T 4692.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.36;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4692,481,0 chrXV 512238 . A G 5681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=244;Dels=0.00;FS=3.838;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.243;QD=23.28;ReadPosRankSum=1.718;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:5681,598,0 chrXV 512256 . G T 5744.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.54;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5744,595,0 chrXV 512566 . G T 5270.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.5255;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.22;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5270,544,0 chrXV 512726 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.96;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3766,391,0 chrXV 512793 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.58;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4292,436,0 chrXV 512820 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.64;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3829,394,0 chrXV 513015 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.10;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2204,234,0 chrXV 513219 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.49;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2147,228,0 chrXV 513337 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.31;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4173,462,0 chrXV 513607 . A T 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.72;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,322,0 chrXV 513637 . A T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.54;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3779,393,0 chrXV 513988 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.53;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4758,490,0 chrXV 514344 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=3.232;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.292;QD=22.41;ReadPosRankSum=1.713;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4057,444,0 chrXV 514397 . A C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.668;QD=22.09;ReadPosRankSum=1.713;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3976,421,0 chrXV 514400 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.78;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3920,409,0 chrXV 514435 . T G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.672;DP=194;Dels=0.00;FS=11.408;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.541;QD=20.61;ReadPosRankSum=3.760;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:5,189:194:99:3999,426,0 chrXV 514625 . C T 5496.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=25.68;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5496,565,0 chrXV 514713 . A G 3033 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;MQRankSum=-0.327;QD=19.32;ReadPosRankSum=2.725;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3066,342,0 chrXV 514714 . C T 3031 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=4.297;HaplotypeScore=4.4133;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;MQRankSum=-0.311;QD=19.43;ReadPosRankSum=1.310;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3064,330,0 chrXV 514715 . T C 2850 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=8.658;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;MQRankSum=1.368;QD=17.92;ReadPosRankSum=2.110;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2883,330,0 chrXV 514738 . G C 2279 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=4.6982;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=18.53;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2312,243,0 chrXV 514746 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=13.981;HaplotypeScore=13.0227;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=0.693;QD=19.11;ReadPosRankSum=2.283;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2574,270,0 chrXV 514832 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=10.9840;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.31;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3737,393,0 chrXV 514882 . T A 1273 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=14.98;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1306,138,0 chrXV 514925 . C T 67.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=15.8154;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=3.55;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,16:19:12:100,12,0 chrXV 514953 . T C 389 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=13.41;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:45:422,45,0 chrXV 514954 . T C 324 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=11.17;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:39:357,39,0 chrXV 514974 . A G 534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=1.648;QD=12.71;ReadPosRankSum=1.648;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:60:567,60,0 chrXV 515034 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=19.27;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1189,126,0 chrXV 515073 . T A 988 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;MQRankSum=-0.062;QD=13.92;ReadPosRankSum=3.329;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1021,105,0 chrXV 515077 . A C 996 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=54.4319;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=13.64;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1029,108,0 chrXV 515081 . C T 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=54.4282;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=14.20;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1084,114,0 chrXV 515090 . G C 1034 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=66.6928;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.36;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1067,114,0 chrXV 515094 . T C 1055 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=65.6961;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.26;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1088,117,0 chrXV 515098 . A C 1122 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.96;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1155,120,0 chrXV 515105 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.36;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1153,123,0 chrXV 515116 . T C 1035 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.62;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1068,114,0 chrXV 515119 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.45;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1028,108,0 chrXV 515138 . G A 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.178;QD=12.96;ReadPosRankSum=1.686;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1005,108,0 chrXV 515159 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=15.85;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1317,135,0 chrXV 515214 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=20.60;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2258,231,0 chrXV 515252 . A C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=24.70;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3409,363,0 chrXV 515279 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5779;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=24.86;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4077,415,0 chrXV 515324 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=177;Dels=0.00;FS=13.458;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=1.652;QD=22.64;ReadPosRankSum=3.339;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:4,170:177:99:4007,429,0 chrXV 515378 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.146;QD=23.77;ReadPosRankSum=1.711;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3969,415,0 chrXV 515441 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=25.11;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4268,459,0 chrXV 515471 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.8412;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.307;QD=25.88;ReadPosRankSum=1.651;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4425,463,0 chrXV 515506 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=165;Dels=0.00;FS=7.946;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.715;QD=24.78;ReadPosRankSum=2.390;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4089,430,0 chrXV 515571 . G A 4786.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.93;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4786,490,0 chrXV 515672 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=22.13;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2999,318,0 chrXV 515705 . G C 1695 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=14.74;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1728,204,0 chrXV 515720 . C T 1712 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=13.70;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1745,198,0 chrXV 515726 . C T 1800 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=13.64;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1833,210,0 chrXV 515728 . A G 1948 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=14.32;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1981,228,0 chrXV 515780 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.651;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.358;QD=20.35;ReadPosRankSum=1.715;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4152,450,0 chrXV 515805 . A T 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=208;Dels=0.00;FS=2.963;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.832;QD=22.44;ReadPosRankSum=2.426;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4668,481,0 chrXV 515884 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=16.10;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1884,225,0 chrXV 515885 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=15.79;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1880,222,0 chrXV 515918 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=12.58;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1782,215,0 chrXV 515927 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=11.26;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1632,194,0 chrXV 515935 . T C 1755 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=12.36;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1788,210,0 chrXV 515948 . T C 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;DP=148;Dels=0.00;FS=6.536;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;MQRankSum=-0.556;QD=12.62;ReadPosRankSum=1.569;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:1901,209,0 chrXV 515981 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=17.51;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2974,318,0 chrXV 516055 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=21.27;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3117,348,0 chrXV 516062 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=20.88;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2935,341,0 chrXV 516077 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=19.35;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2258,266,0 chrXV 516084 . T G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=7.462;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;MQRankSum=-1.637;QD=17.39;ReadPosRankSum=2.321;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2033,248,0 chrXV 516136 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=4.5823;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=17.83;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2351,252,0 chrXV 516140 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.618;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;MQRankSum=2.446;QD=18.00;ReadPosRankSum=2.946;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2355,261,0 chrXV 516181 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=20.49;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3024,312,0 chrXV 516212 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=16.89;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2414,270,0 chrXV 516229 . T A 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.212;QD=15.67;ReadPosRankSum=1.683;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2227,252,0 chrXV 516244 . A G 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=9.018;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;MQRankSum=-0.696;QD=14.74;ReadPosRankSum=2.412;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:1934,222,0 chrXV 516246 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=15.57;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2010,222,0 chrXV 516270 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=12.79;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1606,174,0 chrXV 516275 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=14.11;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1641,180,0 chrXV 516336 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=103.1638;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=18.39;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2221,228,0 chrXV 516351 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=18.77;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2360,240,0 chrXV 516412 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.107;QD=22.88;ReadPosRankSum=1.625;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3707,402,0 chrXV 516539 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.337;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=1.456;QD=25.27;ReadPosRankSum=1.707;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3512,375,0 chrXV 516665 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=24.65;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3722,405,0 chrXV 516689 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=25.76;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3580,364,0 chrXV 516707 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.885;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-1.277;QD=23.06;ReadPosRankSum=1.682;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3239,342,0 chrXV 516828 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=18.27;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2116,225,0 chrXV 516832 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=18.81;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2027,207,0 chrXV 516857 . C T 1400 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=17.95;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1433,144,0 chrXV 516859 . C G 1280 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=16.84;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1313,141,0 chrXV 516864 . C T 1243 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=16.14;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1276,138,0 chrXV 516871 . T C 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=10.116;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;MQRankSum=-1.202;QD=16.94;ReadPosRankSum=2.356;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1371,141,0 chrXV 516893 . G A 1604 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=21.97;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1637,168,0 chrXV 516896 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=22.22;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1722,174,0 chrXV 517028 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=23.89;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2589,273,0 chrXV 517060 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=20.71;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1483,156,0 chrXV 517074 . T C 850 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=15.45;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:883,93,0 chrXV 517088 . C G 701 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=12.30;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:734,81,0 chrXV 517101 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=13.66;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:798,84,0 chrXV 517102 . T C 749 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=13.37;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:782,87,0 chrXV 517115 . C G 1006 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=13.97;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1039,111,0 chrXV 517134 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=15.73;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1323,138,0 chrXV 517167 . G T 2133 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.31;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2166,222,0 chrXV 517216 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=3.692;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.725;QD=22.41;ReadPosRankSum=1.673;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2700,288,0 chrXV 517243 . A G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=6.647;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.485;QD=23.45;ReadPosRankSum=2.397;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2261,246,0 chrXV 517285 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=19.46;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1512,186,0 chrXV 517286 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=20.01;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1534,186,0 chrXV 517301 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=20.86;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1639,183,0 chrXV 517410 . C G 2351 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=24.49;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2384,255,0 chrXV 517420 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=25.46;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2426,249,0 chrXV 517528 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.91;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2224,231,0 chrXV 517533 . C A 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.912;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-0.217;QD=21.24;ReadPosRankSum=-1.047;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2093,225,0 chrXV 517619 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1684;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=11.95;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1240,132,0 chrXV 517635 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;QD=12.88;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1334,141,0 chrXV 517639 . G A 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=12.74;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1371,141,0 chrXV 517647 . C T 1123 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=10.80;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1156,123,0 chrXV 517648 . G A 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=11.04;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1181,126,0 chrXV 517707 . A C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=5.326;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=1.686;QD=20.59;ReadPosRankSum=1.709;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3142,339,0 chrXV 517989 . G A 5079.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5079,523,0 chrXV 518151 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3995,418,0 chrXV 518299 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2890,309,0 chrXV 518346 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.06;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3054,318,0 chrXV 518509 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=25.00;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2708,279,0 chrXV 518604 . T G 2680 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.52;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2713,297,0 chrXV 518700 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.565;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.693;QD=22.39;ReadPosRankSum=1.709;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3359,357,0 chrXV 518701 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=23.71;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3533,358,0 chrXV 518717 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=18.41;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2887,306,0 chrXV 518743 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=15.01;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2060,219,0 chrXV 518748 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=13.50;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1829,192,0 chrXV 518763 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=12.16;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1468,156,0 chrXV 518776 . A G 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;MQRankSum=1.406;QD=11.94;ReadPosRankSum=1.643;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1430,150,0 chrXV 518808 . G A 2188 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=17.93;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2221,237,0 chrXV 518810 . T C 2202 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.90;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2235,234,0 chrXV 518814 . T C 2250 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=18.15;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2283,240,0 chrXV 518877 . C G 2857 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.48;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2890,303,0 chrXV 519037 . A C 2381 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.07;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2414,261,0 chrXV 519048 . T A 2581 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.64;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2614,261,0 chrXV 519432 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.17;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3916,400,0 chrXV 519516 . C G 4048.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.24;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4048,426,0 chrXV 519651 . A G 6427.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.13;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:6427,679,0 chrXV 519771 . C T 7704.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=12.9263;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.85;SB=-4.190e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:7704,790,0 chrXV 519868 . A T 6275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=261;Dels=0.00;FS=5.233;HaplotypeScore=16.4369;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.227;QD=24.04;ReadPosRankSum=2.912;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:3,258:261:99:6275,643,0 chrXV 520009 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4341,454,0 chrXV 520142 . G C 2739 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.36;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2772,291,0 chrXV 520282 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.61;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3458,358,0 chrXV 520321 . C G 3139 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.15;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3172,330,0 chrXV 520372 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8463;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.27;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2965,321,0 chrXV 520499 . A T 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=148;Dels=0.00;FS=9.676;HaplotypeScore=6.1017;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.104;QD=20.26;ReadPosRankSum=2.897;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3031,312,0 chrXV 520515 . T G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=3.009;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.114;QD=18.44;ReadPosRankSum=2.274;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2615,285,0 chrXV 520650 . T C 5076.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.97;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5076,546,0 chrXV 520667 . G T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=20.99;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4722,501,0 chrXV 520674 . C A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=18.23;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3865,438,0 chrXV 520701 . A T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=18.00;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3617,399,0 chrXV 520731 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=191;Dels=0.00;FS=6.278;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.305;QD=18.62;ReadPosRankSum=2.372;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:3557,381,0 chrXV 520774 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.91;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4445,454,0 chrXV 520870 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.64;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3852,411,0 chrXV 520872 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.84;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3710,411,0 chrXV 521151 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.05;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2534,264,0 chrXV 521292 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.67;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3157,327,0 chrXV 521415 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.16;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3103,321,0 chrXV 521442 . G T 2842 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.90;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2875,294,0 chrXV 521445 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.31;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2679,282,0 chrXV 521639 . A T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.96;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4617,475,0 chrXV 521664 . C G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.76;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3897,426,0 chrXV 521727 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.797;QD=25.06;ReadPosRankSum=1.695;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4737,510,0 chrXV 521781 . A G 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=6.124;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.315;QD=22.62;ReadPosRankSum=2.426;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4818,519,0 chrXV 521850 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.45;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4375,466,0 chrXV 521864 . C T 4507.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.54;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4507,466,0 chrXV 522199 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.80;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3855,408,0 chrXV 522242 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=125.0630;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.66;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3256,354,0 chrXV 522250 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=131.9458;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.732;QD=19.21;ReadPosRankSum=1.662;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2915,312,0 chrXV 522406 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=24.61;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3232,331,0 chrXV 522422 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2645;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-1.245;QD=22.96;ReadPosRankSum=1.703;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2811,297,0 chrXV 523000 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.70;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2166,219,0 chrXV 523506 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.1133;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.39;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4772,502,0 chrXV 523527 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.674;QD=21.11;ReadPosRankSum=1.681;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4348,462,0 chrXV 523905 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,224:229:99:4956,517,0 chrXV 524124 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3732,393,0 chrXV 524250 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.02;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3531,364,0 chrXV 524541 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8647;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.52;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4159,427,0 chrXV 524664 . T C 2971 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.17;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3004,330,0 chrXV 524711 . T A 2575 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.41;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2608,264,0 chrXV 524727 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.72;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2248,243,0 chrXV 524958 . A C 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=9.138;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.634;QD=24.83;ReadPosRankSum=1.648;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:1051,111,0 chrXV 525016 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.42;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1511,159,0 chrXV 525148 . T A 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.884;QD=21.24;ReadPosRankSum=1.555;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2115,222,0 chrXV 525158 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.87;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2504,258,0 chrXV 525385 . T A 2797 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.97;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2830,303,0 chrXV 525506 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.15;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3727,399,0 chrXV 525568 . T C 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5814;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.692;QD=20.70;ReadPosRankSum=0.927;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1834,195,0 chrXV 525601 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=103;Dels=0.00;FS=5.712;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.951;QD=24.58;ReadPosRankSum=2.932;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2565,267,0 chrXV 525838 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=6.072;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.633;QD=24.03;ReadPosRankSum=2.878;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3388,354,0 chrXV 525985 . T C 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=199;Dels=0.00;FS=2.996;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.998;QD=24.59;ReadPosRankSum=2.400;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4893,520,0 chrXV 526003 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.43;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4307,442,0 chrXV 526015 . A T 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=3.672;HaplotypeScore=9.7464;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.172;QD=21.00;ReadPosRankSum=1.627;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4158,433,0 chrXV 526144 . A C 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=201;Dels=0.00;FS=3.011;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.055;QD=25.31;ReadPosRankSum=2.425;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:5087,535,0 chrXV 526210 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=25.20;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4184,427,0 chrXV 526270 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.41;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3905,403,0 chrXV 526390 . T C 2454 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.34;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2487,261,0 chrXV 526435 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2440,258,0 chrXV 526628 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.80;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2929,312,0 chrXV 526705 . T A 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=157;Dels=0.00;FS=6.804;HaplotypeScore=16.5927;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.964;QD=22.85;ReadPosRankSum=2.309;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3587,384,0 chrXV 527008 . C A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6371;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.70;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3903,394,0 chrXV 527017 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=157;Dels=0.00;FS=5.513;HaplotypeScore=10.7288;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.813;QD=23.65;ReadPosRankSum=2.787;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3713,390,0 chrXV 527323 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=168;Dels=0.00;FS=2.530;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=24.62;ReadPosRankSum=2.934;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:4136,444,0 chrXV 527497 . G C 4705.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.6196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4705,505,0 chrXV 527698 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.58;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4006,412,0 chrXV 527986 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.54;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2928,312,0 chrXV 528085 . G T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.26;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4350,451,0 chrXV 528112 . T G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.2755;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.249;QD=20.09;ReadPosRankSum=1.712;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3496,390,0 chrXV 528159 . C G 2868 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.78;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2901,321,0 chrXV 528237 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.85;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3627,390,0 chrXV 528349 . A T 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=157;Dels=0.00;FS=6.105;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=24.69;ReadPosRankSum=2.418;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3876,397,0 chrXV 528477 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.56;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3604,384,0 chrXV 528487 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.64;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3450,357,0 chrXV 528799 . A T 2128 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.94;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2161,216,0 chrXV 528813 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.86;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2223,231,0 chrXV 529675 . G A 5128.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.89;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5128,526,0 chrXV 529807 . G C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4564,495,0 chrXV 529863 . G A 5007.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.96;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5007,511,0 chrXV 530757 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3168,327,0 chrXV 530989 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3338,354,0 chrXV 531421 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1214,129,0 chrXV 531654 . A C 2777 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2810,300,0 chrXV 532110 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3769,379,0 chrXV 532911 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4421,457,0 chrXV 533280 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2713,294,0 chrXV 533325 . T C 2603 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.25;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2636,285,0 chrXV 533398 . A C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=4.409;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.126;QD=21.59;ReadPosRankSum=1.330;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3012,315,0 chrXV 533423 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.82;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3177,327,0 chrXV 533520 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=3.030;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.102;QD=22.74;ReadPosRankSum=2.148;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3525,384,0 chrXV 533544 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.06;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3192,328,0 chrXV 533625 . A G 4979.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.90;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4979,537,0 chrXV 533670 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=225;Dels=0.00;FS=6.443;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.067;QD=23.97;ReadPosRankSum=2.394;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:2,220:225:99:5393,580,0 chrXV 533983 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.83;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4196,450,0 chrXV 534213 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.45;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3598,370,0 chrXV 534218 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=183;Dels=0.00;FS=9.175;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.203;QD=18.73;ReadPosRankSum=2.951;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3428,363,0 chrXV 534542 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=14.67;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3128,316,0 chrXV 534846 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.75;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3150,330,0 chrXV 534977 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3845,394,0 chrXV 535075 . G T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.14;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4810,490,0 chrXV 535103 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=192;Dels=0.00;FS=2.580;HaplotypeScore=13.6311;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=-2.461;QD=25.03;ReadPosRankSum=2.901;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4805,505,0 chrXV 535208 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.04;FS=0.000;HaplotypeScore=20.3110;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=21.35;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4633,493,0 chrXV 535304 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.041;QD=23.43;ReadPosRankSum=1.666;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4967,526,0 chrXV 535577 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.99;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4648,487,0 chrXV 535793 . A G 5830.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.8444;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.80;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5830,610,0 chrXV 535943 . T C 4502.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.18;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4502,483,0 chrXV 536145 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.36;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3638,376,0 chrXV 536192 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.074;QD=23.02;ReadPosRankSum=1.703;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2819,300,0 chrXV 536237 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=6.932;HaplotypeScore=11.6001;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.869;QD=23.17;ReadPosRankSum=2.411;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2953,312,0 chrXV 536384 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.69;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3142,333,0 chrXV 536410 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.627;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.611;QD=23.48;ReadPosRankSum=1.707;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3250,336,0 chrXV 536558 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.9126;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.28;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3036,324,0 chrXV 536862 . A G 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=71.1857;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.791;QD=16.02;ReadPosRankSum=1.689;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1331,141,0 chrXV 536881 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.48;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1302,141,0 chrXV 537181 . C T 282 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=65.64;MQ0=0;QD=25.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:33:315,33,0 chrXV 537445 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.5550;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.73;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2121,231,0 chrXV 537484 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=5.377;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.092;QD=24.85;ReadPosRankSum=2.923;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3553,387,0 chrXV 537556 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.80;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2984,312,0 chrXV 537611 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.580;QD=25.02;ReadPosRankSum=1.682;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3428,360,0 chrXV 537738 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.23;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3857,411,0 chrXV 537790 . G C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.25;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3661,385,0 chrXV 537874 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=148;Dels=0.00;FS=2.858;HaplotypeScore=13.7034;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.709;QD=23.13;ReadPosRankSum=2.349;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3423,357,0 chrXV 538068 . G C 2509 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.82;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2542,273,0 chrXV 538230 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.72;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3807,385,0 chrXV 538299 . A G 2520 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.71;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2553,273,0 chrXV 538389 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=25.06;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3383,352,0 chrXV 538395 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=24.47;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3238,336,0 chrXV 538466 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.5474;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.709;QD=20.48;ReadPosRankSum=1.435;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2224,234,0 chrXV 538489 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=112;Dels=0.00;FS=3.050;HaplotypeScore=7.3363;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.324;QD=21.71;ReadPosRankSum=2.025;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2465,255,0 chrXV 538583 . A G 2044 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=7.562;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.157;QD=20.04;ReadPosRankSum=2.208;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2077,228,0 chrXV 538584 . C A 2063 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.05;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2096,222,0 chrXV 538585 . C T 2102 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.02;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2135,222,0 chrXV 538758 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.63;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2839,309,0 chrXV 538794 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=24.65;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3090,327,0 chrXV 538866 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.05;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2967,301,0 chrXV 539133 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.38;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4749,490,0 chrXV 539577 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.22;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:89:99:2011,210,0 chrXV 539639 . A T 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.274;QD=24.11;ReadPosRankSum=2.282;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2155,216,0 chrXV 539640 . A C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.080;QD=23.29;ReadPosRankSum=1.691;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2036,216,0 chrXV 540873 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.01;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4257,454,0 chrXV 540930 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=4.485;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=22.64;ReadPosRankSum=1.706;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3067,321,0 chrXV 540998 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3272,345,0 chrXV 541182 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.74;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3662,370,0 chrXV 541377 . A G 4912.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.19;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4912,514,0 chrXV 541674 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.49;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4002,412,0 chrXV 541939 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=3.015;HaplotypeScore=11.3248;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.527;QD=23.19;ReadPosRankSum=2.369;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4290,459,0 chrXV 542472 . T G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3837,411,0 chrXV 542699 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=3.283;HaplotypeScore=12.7589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.522;QD=23.53;ReadPosRankSum=1.656;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4259,451,0 chrXV 542841 . T C 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.533;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.321;QD=23.74;ReadPosRankSum=1.714;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4630,484,0 chrXV 542889 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=178;Dels=0.00;FS=10.437;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.233;QD=23.88;ReadPosRankSum=2.949;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:4250,451,0 chrXV 542952 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.1114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4128,450,0 chrXV 543081 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=3.020;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.378;QD=24.66;ReadPosRankSum=2.402;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3847,403,0 chrXV 543282 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6449;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.06;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4811,490,0 chrXV 544733 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3271,342,0 chrXV 546198 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.54;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3849,391,0 chrXV 546237 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5149;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.666;QD=23.75;ReadPosRankSum=1.710;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3729,394,0 chrXV 548689 . A C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.407;QD=23.86;ReadPosRankSum=1.696;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2324,246,0 chrXV 549314 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.36;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2645,270,0 chrXV 550623 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.286;QD=21.51;ReadPosRankSum=1.698;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2206,237,0 chrXV 550636 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.43;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2155,228,0 chrXV 551813 . G A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.75;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4584,466,0 chrXV 551830 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6122;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.53;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4146,421,0 chrXV 552069 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.67;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3216,328,0 chrXV 552421 . A T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.9165;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.33;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4526,472,0 chrXV 552775 . C G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.15;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3582,375,0 chrXV 553072 . A G 4658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.933;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.032;QD=24.78;ReadPosRankSum=1.714;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4658,501,0 chrXV 553085 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.50;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4434,466,0 chrXV 553150 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=2.979;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.419;QD=22.18;ReadPosRankSum=2.412;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2961,315,0 chrXV 553386 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.79;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4346,442,0 chrXV 553950 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.93;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4677,496,0 chrXV 554076 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.97;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3692,390,0 chrXV 555451 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.459;QD=25.25;ReadPosRankSum=0.514;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4166,442,0 chrXV 556870 . T G 2766 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.05;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2799,294,0 chrXV 557021 . T A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.54;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3484,358,0 chrXV 557194 . T G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3703,382,0 chrXV 557623 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.668;QD=22.39;ReadPosRankSum=1.709;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3493,381,0 chrXV 557722 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=150;Dels=0.00;FS=3.837;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.109;QD=22.93;ReadPosRankSum=1.686;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3440,363,0 chrXV 557758 . A G 3102 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3135,330,0 chrXV 557821 . T G 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.123;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=24.40;ReadPosRankSum=1.710;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3831,411,0 chrXV 558155 . G C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.23;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3482,361,0 chrXV 558381 . T A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.65;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3944,420,0 chrXV 558497 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4279,433,0 chrXV 558567 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3841,403,0 chrXV 558913 . G C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.43;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3398,360,0 chrXV 558953 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.53;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3600,373,0 chrXV 559459 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=217;Dels=0.00;FS=9.523;HaplotypeScore=5.9448;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.597;QD=20.71;ReadPosRankSum=2.958;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4493,481,0 chrXV 559465 . C T 4634.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.01;FS=0.000;HaplotypeScore=4.8198;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.55;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4634,469,0 chrXV 559477 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=212;Dels=0.00;FS=9.930;HaplotypeScore=7.5074;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.691;QD=19.46;ReadPosRankSum=2.948;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4125,438,0 chrXV 559714 . T A 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=11.171;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.800;QD=21.61;ReadPosRankSum=2.376;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2194,225,0 chrXV 559768 . T G 2364 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2397,252,0 chrXV 560189 . T A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.69;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4198,436,0 chrXV 560432 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.44;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3813,414,0 chrXV 560610 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=4.180;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.792;QD=26.64;ReadPosRankSum=1.715;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5302,556,0 chrXV 560807 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.710;DP=147;Dels=0.00;FS=20.164;HaplotypeScore=113.9391;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.763;QD=14.48;ReadPosRankSum=4.432;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:13,134:147:99:2161,231,0 chrXV 561511 . G A 5326.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2561;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.50;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5326,541,0 chrXV 562082 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.5049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3867,397,0 chrXV 562162 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.84;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3972,406,0 chrXV 562298 . A T 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=3.158;HaplotypeScore=21.2602;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.655;QD=25.97;ReadPosRankSum=1.713;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4674,481,0 chrXV 562357 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.07;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4301,445,0 chrXV 562468 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.077;QD=23.72;ReadPosRankSum=1.685;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3511,372,0 chrXV 562567 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.2217;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3570,372,0 chrXV 562672 . G C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.15;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3311,363,0 chrXV 562688 . A C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.59;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3344,351,0 chrXV 562828 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.82;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3822,388,0 chrXV 563008 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2994,306,0 chrXV 563766 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.356;QD=24.88;ReadPosRankSum=1.685;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3658,381,0 chrXV 563862 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.82;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2781,294,0 chrXV 563917 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.57;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3605,367,0 chrXV 563945 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.970;QD=23.54;ReadPosRankSum=1.658;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3319,348,0 chrXV 564207 . T G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.27;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3654,396,0 chrXV 564208 . C A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=25.05;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3833,388,0 chrXV 564258 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.22;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2664,273,0 chrXV 564299 . G C 2704 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2737,291,0 chrXV 564451 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.779;QD=23.21;ReadPosRankSum=1.700;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2586,276,0 chrXV 564575 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.86;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3672,376,0 chrXV 565820 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8594;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.804;QD=23.49;ReadPosRankSum=1.709;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3617,381,0 chrXV 565891 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.461;HaplotypeScore=9.8620;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.878;QD=22.45;ReadPosRankSum=1.659;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3221,354,0 chrXV 566126 . T A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.67;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3930,414,0 chrXV 566165 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.48;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3616,381,0 chrXV 566210 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.11;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3246,342,0 chrXV 566353 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.70;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2830,288,0 chrXV 566373 . A C 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.775;QD=20.87;ReadPosRankSum=1.699;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2266,240,0 chrXV 566430 . G T 1835 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.38;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1868,189,0 chrXV 566502 . A G 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.137;QD=24.05;ReadPosRankSum=1.678;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1572,168,0 chrXV 566542 . A C 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.639;QD=24.04;ReadPosRankSum=1.685;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1812,192,0 chrXV 566564 . A C 1702 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.64;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1735,189,0 chrXV 566820 . A T 4724.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.99;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4724,499,0 chrXV 567085 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.14;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4103,435,0 chrXV 567262 . G A 3085 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=23.02;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3118,319,0 chrXV 567267 . C T 2923 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.14;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2956,303,0 chrXV 567269 . G A 2807 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.59;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2840,303,0 chrXV 567276 . A G 2712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=2.910;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=1.605;QD=20.55;ReadPosRankSum=2.412;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2745,291,0 chrXV 567367 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.68;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3922,403,0 chrXV 568141 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=6.849;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.668;QD=21.61;ReadPosRankSum=2.392;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2777,291,0 chrXV 568252 . C G 4681.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.8517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4681,502,0 chrXV 568707 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.19;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2930,300,0 chrXV 569058 . T A 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=193;Dels=0.00;FS=2.907;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.426;QD=23.99;ReadPosRankSum=2.424;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4631,484,0 chrXV 569259 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=176;Dels=0.00;FS=2.839;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.320;QD=24.20;ReadPosRankSum=2.407;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:4259,451,0 chrXV 569690 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=128.6722;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=15.98;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2318,237,0 chrXV 569770 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.27;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3011,318,0 chrXV 569787 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.476;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.969;QD=25.42;ReadPosRankSum=1.703;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3032,318,0 chrXV 569825 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.66;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2524,273,0 chrXV 570373 . A T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4260,442,0 chrXV 571079 . T C 5140.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.3439;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.36;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5140,552,0 chrXV 571108 . C T 5170.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.62;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5170,526,0 chrXV 571256 . A C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=2.634;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.038;QD=22.37;ReadPosRankSum=2.383;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3311,351,0 chrXV 571300 . G T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.96;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3494,358,0 chrXV 571406 . A G 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=4.210;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.219;QD=23.77;ReadPosRankSum=1.712;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4159,447,0 chrXV 571413 . C A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.93;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3877,397,0 chrXV 571487 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.35;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3896,417,0 chrXV 571939 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=25.15;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2825,291,0 chrXV 571945 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=24.19;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2839,291,0 chrXV 572041 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.85;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1169,123,0 chrXV 572098 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=3.8784;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.70;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1617,165,0 chrXV 572102 . C T 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.936;QD=20.52;ReadPosRankSum=1.592;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1572,162,0 chrXV 572376 . A T 2191 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.90;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2224,231,0 chrXV 572407 . T C 2679 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.50;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2712,294,0 chrXV 572419 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=125;Dels=0.00;FS=14.107;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.895;QD=22.10;ReadPosRankSum=2.847;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2796,300,0 chrXV 572941 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.108;QD=21.90;ReadPosRankSum=2.419;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3592,387,0 chrXV 573228 . T C 5888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.975;QD=21.57;ReadPosRankSum=2.396;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:5888,631,0 chrXV 573248 . A G 5730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=257;Dels=0.00;FS=9.748;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.435;QD=22.30;ReadPosRankSum=2.364;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5730,601,0 chrXV 573312 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=243;Dels=0.00;FS=6.037;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.690;QD=20.93;ReadPosRankSum=2.971;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:5086,547,0 chrXV 573324 . A T 5386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=249;Dels=0.00;FS=3.016;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.449;QD=21.63;ReadPosRankSum=0.261;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:5386,540,0 chrXV 573358 . A G 5473.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.27;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5473,583,0 chrXV 573377 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.908;QD=19.41;ReadPosRankSum=1.706;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:5240,559,0 chrXV 573378 . A G 5244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.403;DP=269;Dels=0.00;FS=5.180;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.431;QD=19.49;ReadPosRankSum=3.429;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:4,265:269:99:5244,556,0 chrXV 573442 . C T 5338.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.06;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5338,547,0 chrXV 574266 . A T 5581.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.25;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5581,571,0 chrXV 574378 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.7728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4764,487,0 chrXV 574716 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3831,397,0 chrXV 574776 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4168,453,0 chrXV 574821 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3193,342,0 chrXV 577461 . C T 2710 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=27.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2743,285,0 chrXV 577639 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;MQRankSum=-1.124;QD=23.93;ReadPosRankSum=1.626;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3168,339,0 chrXV 577827 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.04;FS=0.000;HaplotypeScore=4.7083;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.20;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2399,246,0 chrXV 577890 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.40;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2116,219,0 chrXV 577985 . G T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.14;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3816,391,0 chrXV 578058 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.05;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2745,282,0 chrXV 578365 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.67;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3676,385,0 chrXV 578644 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.237;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.264;QD=23.04;ReadPosRankSum=1.654;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4102,447,0 chrXV 578704 . A T 3046 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3079,318,0 chrXV 578986 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3187,336,0 chrXV 579050 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=4.023;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.394;QD=24.10;ReadPosRankSum=1.698;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2515,267,0 chrXV 579079 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.562;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.334;QD=24.12;ReadPosRankSum=1.700;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2686,282,0 chrXV 579389 . A G 6099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=249;Dels=0.00;FS=3.628;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.424;QD=24.49;ReadPosRankSum=1.704;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:6099,646,0 chrXV 580144 . T A 186.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;MQRankSum=-1.107;QD=16.91;ReadPosRankSum=1.423;SB=-8.491e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:24:219,24,0 chrXV 580206 . A G 672 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:75:705,75,0 chrXV 580333 . C G 2463 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=26.48;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2496,255,0 chrXV 580357 . A T 2801 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.23;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2834,291,0 chrXV 580495 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4870;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.17;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3769,399,0 chrXV 580579 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=158;Dels=0.00;FS=6.096;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.726;QD=21.61;ReadPosRankSum=2.917;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3414,357,0 chrXV 580595 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.63;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3128,327,0 chrXV 580924 . G A 4853.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.81;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4853,496,0 chrXV 581173 . G A 5164.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.9957;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.16;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5164,535,0 chrXV 581278 . A T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.14;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3444,354,0 chrXV 581305 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.37;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2811,294,0 chrXV 581450 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.56;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1635,174,0 chrXV 581692 . A G 561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=43;Dels=0.00;FS=3.358;HaplotypeScore=7.3284;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.733;QD=13.05;ReadPosRankSum=1.644;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:3,39:43:66:594,66,0 chrXV 581732 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.31;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1184,129,0 chrXV 582005 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.83;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4452,451,0 chrXV 582590 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.00;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3177,325,0 chrXV 582755 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0674;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.509;QD=24.52;ReadPosRankSum=1.681;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3359,363,0 chrXV 582812 . G C 2576 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2609,279,0 chrXV 583591 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3290,337,0 chrXV 583715 . A G 2900 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.36;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2933,318,0 chrXV 584081 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=24.54;ReadPosRankSum=1.636;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1800,189,0 chrXV 585188 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4632,487,0 chrXV 585314 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4152,439,0 chrXV 585644 . T C 7270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=310;Dels=0.00;FS=3.004;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.727;QD=23.45;ReadPosRankSum=2.418;SB=-4.049e+03 GT:AD:DP:GQ:PL 1/1:2,307:310:99:7270,763,0 chrXV 585683 . T C 7054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=21.7744;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.164;QD=22.61;ReadPosRankSum=1.688;SB=-4.023e+03 GT:AD:DP:GQ:PL 1/1:1,310:312:99:7054,745,0 chrXV 585728 . T C 6296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=30.4556;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.025;QD=22.49;ReadPosRankSum=1.670;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:6296,676,0 chrXV 585808 . T C 6822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=295;Dels=0.00;FS=7.077;HaplotypeScore=20.0060;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=2.391;QD=23.13;ReadPosRankSum=2.424;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:2,291:295:99:6822,736,0 chrXV 585970 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=224;Dels=0.00;FS=6.058;HaplotypeScore=17.3560;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.545;QD=23.63;ReadPosRankSum=2.951;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:5294,556,0 chrXV 586076 . A T 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=231;Dels=0.00;FS=6.465;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.069;QD=20.51;ReadPosRankSum=2.365;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4738,487,0 chrXV 586108 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=15.81;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3148,330,0 chrXV 586109 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7715;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.29;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:3061,330,0 chrXV 586143 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.22;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3699,370,0 chrXV 586164 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.163;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.964;QD=18.80;ReadPosRankSum=1.681;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3817,403,0 chrXV 586304 . T C 4451.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.59;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4451,472,0 chrXV 586402 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.98;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4124,427,0 chrXV 586701 . A C 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=3.602;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.913;QD=24.13;ReadPosRankSum=1.711;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3982,418,0 chrXV 586839 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.85;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3553,387,0 chrXV 587077 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.287;QD=24.58;ReadPosRankSum=-0.157;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4621,463,0 chrXV 587142 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.574;HaplotypeScore=21.5987;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.292;QD=19.33;ReadPosRankSum=1.677;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3654,399,0 chrXV 587265 . T C 6478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=286;Dels=0.00;FS=5.948;HaplotypeScore=23.7517;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.053;QD=22.65;ReadPosRankSum=2.961;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:3,280:286:99:6478,706,0 chrXV 587316 . C T 5798.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.29;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5798,616,0 chrXV 587400 . C T 6431.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.0754;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.32;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6431,670,0 chrXV 587460 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.61;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4911,534,0 chrXV 587490 . C G 4383.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.22;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4383,474,0 chrXV 587565 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.85;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5143,550,0 chrXV 587691 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.65;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2880,291,0 chrXV 587816 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.11;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3250,336,0 chrXV 587817 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.30;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3262,337,0 chrXV 588288 . C T 5851.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=22.5729;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.05;SB=-3.412e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5851,633,0 chrXV 588514 . A G 5362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.3861;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.494;QD=22.91;ReadPosRankSum=1.717;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5362,585,0 chrXV 588756 . G A 5078.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.95;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5078,541,0 chrXV 588933 . T A 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=3.224;HaplotypeScore=7.5597;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.182;QD=21.23;ReadPosRankSum=1.615;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4416,454,0 chrXV 588953 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.71;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4038,432,0 chrXV 589016 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.1970;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.26;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4061,415,0 chrXV 589146 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4963;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.02;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3765,408,0 chrXV 589221 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.83;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3447,372,0 chrXV 589248 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7062;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.95;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3692,376,0 chrXV 589272 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.40;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3440,369,0 chrXV 589303 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.48;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3203,330,0 chrXV 589429 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.283;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.467;QD=22.59;ReadPosRankSum=1.702;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2631,279,0 chrXV 589481 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.96;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2654,270,0 chrXV 589839 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.87;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2046,210,0 chrXV 589882 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.44;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1674,171,0 chrXV 589883 . G T 1651 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.34;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1684,171,0 chrXV 590048 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.96;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3349,346,0 chrXV 590260 . A T 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=2.680;HaplotypeScore=8.1227;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.766;QD=22.69;ReadPosRankSum=2.376;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3051,312,0 chrXV 590443 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.20;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2492,264,0 chrXV 590452 . G T 2346 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.33;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2379,246,0 chrXV 590749 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.18;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4003,409,0 chrXV 591118 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.35;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3330,340,0 chrXV 591121 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.837;QD=21.69;ReadPosRankSum=1.709;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3297,339,0 chrXV 591202 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.83;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3670,379,0 chrXV 591532 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.62;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2655,273,0 chrXV 591630 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=4.320;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.142;QD=24.06;ReadPosRankSum=1.661;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3561,375,0 chrXV 591684 . G A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4288,433,0 chrXV 591787 . T A 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=4.102;HaplotypeScore=8.9736;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.048;QD=23.41;ReadPosRankSum=1.708;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3371,354,0 chrXV 591850 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.23;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3446,366,0 chrXV 591904 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.7856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3050,324,0 chrXV 592238 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.20;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4439,454,0 chrXV 592245 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.46;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4379,460,0 chrXV 592540 . A G 6748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=310;Dels=0.00;FS=5.221;HaplotypeScore=31.3079;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.091;QD=21.77;ReadPosRankSum=3.422;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:4,303:310:99:6748,724,0 chrXV 592588 . G A 5591.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.91;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5591,601,0 chrXV 592592 . G C 5198.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.84;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5198,561,0 chrXV 592863 . T G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6362;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.475;QD=24.18;ReadPosRankSum=2.305;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4329,434,0 chrXV 592976 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.242;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.475;QD=22.68;ReadPosRankSum=1.681;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3095,330,0 chrXV 593587 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.640;QD=23.20;ReadPosRankSum=1.671;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2655,279,0 chrXV 593851 . G T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.40;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3721,390,0 chrXV 593956 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=138;Dels=0.00;FS=10.956;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.239;QD=19.97;ReadPosRankSum=3.600;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:5,133:138:99:2789,297,0 chrXV 593957 . C A 2880 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.43;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2913,300,0 chrXV 594020 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.08;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2543,261,0 chrXV 594122 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.26;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1903,195,0 chrXV 594267 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=25.50;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1767,189,0 chrXV 594306 . A G 107.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;DP=67;Dels=0.00;FS=3.126;HaplotypeScore=51.8358;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=0.589;QD=1.60;ReadPosRankSum=-4.531;SB=2.87 GT:AD:DP:GQ:PL 1/1:57,10:67:18:140,18,0 chrXV 594439 . T A 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.669;QD=22.02;ReadPosRankSum=1.702;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2543,279,0 chrXV 594446 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=22.64;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2637,279,0 chrXV 594455 . G C 2475 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=21.71;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2508,267,0 chrXV 594499 . G C 2644 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9500;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=21.32;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2677,285,0 chrXV 594586 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=23.35;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3162,322,0 chrXV 594667 . A G 1851 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=22.85;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,207,0 chrXV 594673 . T C 1747 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;QD=22.99;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1780,198,0 chrXV 594677 . G A 1762 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=23.18;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1795,192,0 chrXV 594684 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=21.41;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1810,201,0 chrXV 594720 . A C 1701 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=23.62;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1734,189,0 chrXV 594737 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=25.38;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2013,204,0 chrXV 594821 . T C 631 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=1;QD=17.53;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:78:664,78,0 chrXV 600564 . T C 50.97 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.16;MQ0=46;QD=0.86;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:43,13:59:9:83,9,0 chrXV 600572 . G A 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.79;MQ0=37;QD=1.08;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:37,13:50:9:86,9,0 chrXV 600575 . A G 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=35;QD=1.12;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:35,13:48:9:86,9,0 chrXV 600576 . T G 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.25;MQ0=34;QD=1.15;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:34,13:47:9:86,9,0 chrXV 600580 . G A 54.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=33;QD=1.20;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:33,13:46:9:87,9,0 chrXV 600588 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=28;QD=1.22;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:27,14:41:9:82,9,0 chrXV 600591 . A G 54.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=26;QD=1.41;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:26,13:39:9:87,9,0 chrXV 600597 . G T 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.43;MQ0=23;QD=1.50;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:21,13:36:9:86,9,0 chrXV 600611 . A C 52.97 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=20;QD=1.61;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:20,13:33:9:85,9,0 chrXV 600618 . A T 53.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.86;MQ0=18;QD=1.86;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:18,11:29:9:86,9,0 chrXV 600811 . C G 982 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=20.04;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1015,108,0 chrXV 600853 . A T 496 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=14.17;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:54:529,54,0 chrXV 600857 . A C 392 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=10.792;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=1.636;QD=10.89;ReadPosRankSum=1.540;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:45:425,45,0 chrXV 600864 . A T 318 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=7.95;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:36:351,36,0 chrXV 600887 . G T 478 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=8.69;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:54:511,54,0 chrXV 600978 . G C 2858 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=25.98;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2891,303,0 chrXV 601015 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=24.66;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2154,231,0 chrXV 601201 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.55;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2193,231,0 chrXV 601255 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.37;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2066,219,0 chrXV 601297 . G T 2036 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.57;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2069,216,0 chrXV 601307 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.07;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2152,216,0 chrXV 601463 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.4424;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.124;QD=24.19;ReadPosRankSum=1.709;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3580,381,0 chrXV 601482 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.263;QD=23.14;ReadPosRankSum=1.680;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3111,327,0 chrXV 601569 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.69;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3340,340,0 chrXV 601702 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.0957;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=26.12;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3839,391,0 chrXV 601749 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.71;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3520,366,0 chrXV 601761 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=4.800;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.470;QD=20.66;ReadPosRankSum=1.709;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3153,333,0 chrXV 601776 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.65;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2941,315,0 chrXV 601817 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.9819;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.89;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2430,258,0 chrXV 601911 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.464;QD=24.27;ReadPosRankSum=1.711;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4077,429,0 chrXV 602229 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0403;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=25.81;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2950,298,0 chrXV 602250 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.49;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2799,288,0 chrXV 602578 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.782;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.980;QD=25.81;ReadPosRankSum=1.678;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3330,357,0 chrXV 602686 . C A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.53;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4034,418,0 chrXV 602888 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.52;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3433,363,0 chrXV 602945 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.41;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3278,334,0 chrXV 602954 . A C 3171 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.72;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3204,345,0 chrXV 603046 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.15;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2448,261,0 chrXV 603257 . C G 2879 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.85;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2912,306,0 chrXV 603266 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.07;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2940,306,0 chrXV 603325 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.44;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2863,297,0 chrXV 603468 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.393;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.810;QD=24.67;ReadPosRankSum=1.710;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3824,408,0 chrXV 603549 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=172;Dels=0.00;FS=7.549;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.688;QD=23.58;ReadPosRankSum=2.363;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4056,424,0 chrXV 603740 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.51;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3469,363,0 chrXV 603949 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=25.57;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3350,343,0 chrXV 603992 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.57;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2945,309,0 chrXV 604007 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.62;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3017,307,0 chrXV 604413 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.47;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3246,345,0 chrXV 604415 . C G 3129 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.43;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3162,342,0 chrXV 604521 . G C 3063 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.20;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3096,336,0 chrXV 604538 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.438;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.137;QD=21.62;ReadPosRankSum=1.705;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2800,306,0 chrXV 604572 . A T 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.247;QD=20.35;ReadPosRankSum=1.680;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2740,294,0 chrXV 604757 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=13.1290;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.79;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3496,366,0 chrXV 605280 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.58;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2873,303,0 chrXV 605290 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.65;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2944,312,0 chrXV 605294 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.94;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3070,313,0 chrXV 605911 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=190;Dels=0.00;FS=8.877;HaplotypeScore=21.3291;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.255;QD=21.92;ReadPosRankSum=3.376;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:4,184:190:99:4165,447,0 chrXV 605978 . G A 5459.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.05;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5459,568,0 chrXV 606232 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.498;QD=25.07;ReadPosRankSum=-0.983;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3735,394,0 chrXV 606329 . G T 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=98.2282;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=21.60;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2820,294,0 chrXV 606373 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=13.81;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1745,186,0 chrXV 606393 . T G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.5388;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;MQRankSum=-1.433;QD=12.58;ReadPosRankSum=1.707;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:1781,186,0 chrXV 606412 . T G 1889 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=14.53;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1922,201,0 chrXV 606849 . G T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3745,396,0 chrXV 606886 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4114,421,0 chrXV 607382 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2593,276,0 chrXV 607617 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=6.6647;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.998;QD=23.96;ReadPosRankSum=1.673;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2860,309,0 chrXV 607837 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3585,373,0 chrXV 608505 . T C 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=6.709;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.624;QD=23.01;ReadPosRankSum=1.686;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1759,183,0 chrXV 608673 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.00;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2343,255,0 chrXV 608682 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.35;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2275,255,0 chrXV 608836 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=149;Dels=0.00;FS=9.193;HaplotypeScore=14.0291;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.977;QD=23.27;ReadPosRankSum=3.339;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:4,143:149:99:3467,372,0 chrXV 608958 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.61;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2605,282,0 chrXV 609109 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.47;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2588,264,0 chrXV 609276 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.13;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3133,321,0 chrXV 609344 . G T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.87;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3586,378,0 chrXV 609537 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=25.69;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4033,415,0 chrXV 609558 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.772;DP=139;Dels=0.00;FS=8.058;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.827;QD=22.76;ReadPosRankSum=3.648;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:5,134:139:99:3196,342,0 chrXV 609836 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.995;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.954;QD=24.87;ReadPosRankSum=2.388;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2993,318,0 chrXV 609918 . A T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.84;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3453,369,0 chrXV 610300 . T C 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=222;Dels=0.00;FS=8.189;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.184;QD=23.55;ReadPosRankSum=2.383;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:5227,570,0 chrXV 610420 . C A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4556,466,0 chrXV 610496 . G C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.12;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3868,405,0 chrXV 610549 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.82;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3787,385,0 chrXV 610554 . C G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.84;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3494,369,0 chrXV 610660 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.18;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2629,279,0 chrXV 610864 . A G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.699;QD=23.55;ReadPosRankSum=1.470;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:2011,216,0 chrXV 610882 . A C 1860 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7499;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.96;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1893,198,0 chrXV 610939 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.20;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2981,315,0 chrXV 611029 . T G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.602;QD=23.18;ReadPosRankSum=1.694;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2189,228,0 chrXV 611065 . T A 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.283;QD=24.76;ReadPosRankSum=1.697;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2484,255,0 chrXV 611163 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.6135;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.66;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3336,343,0 chrXV 611203 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=25.84;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3721,382,0 chrXV 611430 . T A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.65;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3789,388,0 chrXV 611434 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=171;Dels=0.00;FS=8.069;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.160;QD=20.74;ReadPosRankSum=3.408;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3546,372,0 chrXV 611572 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=24.01;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3625,396,0 chrXV 611599 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=144;Dels=0.00;FS=6.103;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.560;QD=23.10;ReadPosRankSum=2.951;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3326,351,0 chrXV 611617 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=160;Dels=0.00;FS=2.844;HaplotypeScore=8.9425;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.008;QD=21.08;ReadPosRankSum=2.327;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3373,354,0 chrXV 611686 . A G 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=4.791;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=0.346;QD=21.92;ReadPosRankSum=1.716;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4822,511,0 chrXV 611688 . A C 4776.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=22.11;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4776,505,0 chrXV 611712 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=4.586;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=0.276;QD=17.89;ReadPosRankSum=1.699;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3703,390,0 chrXV 611714 . C G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=18.12;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3769,394,0 chrXV 611752 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.992;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=0.082;QD=16.95;ReadPosRankSum=1.691;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:2898,315,0 chrXV 611842 . A G 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.636;QD=23.34;ReadPosRankSum=1.684;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5111,547,0 chrXV 611904 . A T 5378.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.60;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5378,565,0 chrXV 612123 . G A 6053.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.8615;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.91;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6053,625,0 chrXV 612770 . T A 1394 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.03;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1427,147,0 chrXV 612840 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.53;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1445,156,0 chrXV 612914 . C G 2075 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2108,219,0 chrXV 613096 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3073,310,0 chrXV 614146 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=166;Dels=0.00;FS=3.688;HaplotypeScore=10.7092;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.522;QD=24.22;ReadPosRankSum=-0.459;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4020,396,0 chrXV 614212 . A G 4450.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.6706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4450,463,0 chrXV 614917 . A C 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=214;Dels=0.00;FS=10.132;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.855;QD=24.91;ReadPosRankSum=2.427;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5330,574,0 chrXV 614998 . C T 4690.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.45;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4690,496,0 chrXV 615019 . C T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=24.39;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4707,487,0 chrXV 615079 . T C 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=3.349;HaplotypeScore=18.1126;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.458;QD=24.57;ReadPosRankSum=1.718;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5896,616,0 chrXV 615172 . G A 5617.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.2188;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=22.83;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5617,577,0 chrXV 615175 . A G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=242;Dels=0.00;FS=6.798;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.281;QD=21.35;ReadPosRankSum=2.429;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5167,570,0 chrXV 615199 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.56;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4528,460,0 chrXV 615307 . C T 5214.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.81;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5214,532,0 chrXV 615643 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.57;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3836,411,0 chrXV 616123 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4003,409,0 chrXV 616666 . T A 2391 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.21;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2424,252,0 chrXV 616760 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=23.32;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2621,279,0 chrXV 616762 . C A 2539 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=22.87;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2572,273,0 chrXV 616818 . A T 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.878;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.014;QD=19.72;ReadPosRankSum=1.648;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2458,255,0 chrXV 616830 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.031;QD=17.90;ReadPosRankSum=1.701;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2020,216,0 chrXV 616831 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=18.14;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2046,219,0 chrXV 616846 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.41;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2581,261,0 chrXV 617274 . T A 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.782;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.598;QD=25.85;ReadPosRankSum=1.625;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3335,340,0 chrXV 617336 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5637;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.35;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3372,348,0 chrXV 617676 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2896,306,0 chrXV 617717 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.96;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3178,330,0 chrXV 617892 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=4.307;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.698;QD=25.12;ReadPosRankSum=1.704;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3148,324,0 chrXV 618586 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.97;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3421,366,0 chrXV 618618 . G T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.01;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3345,357,0 chrXV 618629 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.073;QD=21.25;ReadPosRankSum=1.668;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3464,369,0 chrXV 618723 . G A 3919.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0756;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.61;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3919,420,0 chrXV 618863 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.26;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3663,373,0 chrXV 618889 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.91;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3562,364,0 chrXV 618906 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.857;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.373;QD=21.73;ReadPosRankSum=1.710;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3455,366,0 chrXV 618941 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=15.64;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2269,228,0 chrXV 618972 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.424;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=89.9454;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=0.399;QD=0.13;ReadPosRankSum=-3.925;SB=-7.476e+01 GT:AD:DP:GQ:PL 1/1:106,7:113:6:46,6,0 chrXV 618996 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=13.01;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1777,192,0 chrXV 619031 . C G 4271.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.79;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4271,474,0 chrXV 619220 . G A 7618.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=19.1095;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.50;SB=-4.192e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7618,772,0 chrXV 619398 . A G 5685.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.3172;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.21;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5685,613,0 chrXV 619601 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=132;Dels=0.00;FS=5.219;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.073;QD=23.21;ReadPosRankSum=3.246;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:3097,333,0 chrXV 619636 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.48;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2874,291,0 chrXV 619647 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=9.052;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.128;QD=22.73;ReadPosRankSum=2.409;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2806,297,0 chrXV 619861 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.75;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3144,345,0 chrXV 620025 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3659,393,0 chrXV 620334 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2882,303,0 chrXV 620397 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=137;Dels=0.00;FS=5.911;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.410;QD=24.68;ReadPosRankSum=2.948;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:3381,363,0 chrXV 620433 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.17;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3384,349,0 chrXV 620620 . G A 5400.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.7999;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.96;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5400,547,0 chrXV 620881 . A G 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.4295;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.257;QD=22.14;ReadPosRankSum=1.716;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,215:221:99:4892,526,0 chrXV 621951 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=6.2968;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.158;QD=22.57;ReadPosRankSum=0.924;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3724,399,0 chrXV 621972 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.48;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4294,456,0 chrXV 622303 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.67;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3979,409,0 chrXV 622413 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.471;HaplotypeScore=7.0780;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.784;QD=24.42;ReadPosRankSum=2.351;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3638,382,0 chrXV 623130 . C A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.25;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4705,484,0 chrXV 623349 . G C 2691 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2724,294,0 chrXV 623422 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2730,279,0 chrXV 623562 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2291,249,0 chrXV 623604 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.46;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2848,291,0 chrXV 623860 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.43;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4217,451,0 chrXV 623880 . A T 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.5489;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.283;QD=23.93;ReadPosRankSum=0.053;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4691,463,0 chrXV 623925 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.1144;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.22;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4348,460,0 chrXV 623931 . A T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.2794;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.61;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4261,456,0 chrXV 624091 . G A 6096.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.3496;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.72;SB=-3.649e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6096,619,0 chrXV 624279 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.46;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3636,373,0 chrXV 624391 . G T 2313 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.13;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2346,240,0 chrXV 624491 . T A 900 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.45;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:933,96,0 chrXV 624522 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.57;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:936,99,0 chrXV 624582 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.36;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:905,93,0 chrXV 624626 . T A 1048 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.30;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1081,111,0 chrXV 624648 . T C 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=4.293;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.040;QD=21.84;ReadPosRankSum=1.652;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:972,102,0 chrXV 624930 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.7341;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.00;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5013,537,0 chrXV 625082 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.4073;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3675,376,0 chrXV 625559 . A C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.67;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3716,393,0 chrXV 625581 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=3.031;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=0.066;QD=21.40;ReadPosRankSum=2.375;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2837,300,0 chrXV 625595 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-0.326;QD=20.41;ReadPosRankSum=1.664;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2094,225,0 chrXV 625596 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=20.25;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2078,219,0 chrXV 625649 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.59;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2247,231,0 chrXV 626072 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.356;QD=24.07;ReadPosRankSum=1.692;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4236,448,0 chrXV 626502 . G C 1264 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=17.32;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1297,141,0 chrXV 626508 . T G 1263 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=17.30;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1296,135,0 chrXV 626516 . A T 1269 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=17.15;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1302,132,0 chrXV 626519 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=17.13;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1335,135,0 chrXV 626602 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.03;FS=0.000;HaplotypeScore=7.5222;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.67;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1921,204,0 chrXV 627315 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4005,423,0 chrXV 627894 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.41;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2520,273,0 chrXV 628108 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.34;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2795,291,0 chrXV 628209 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.90;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1844,186,0 chrXV 628228 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.320;QD=19.65;ReadPosRankSum=1.631;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2077,219,0 chrXV 628280 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.31;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3133,324,0 chrXV 628552 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6681;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.85;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4525,466,0 chrXV 628909 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;DP=169;Dels=0.00;FS=6.922;HaplotypeScore=12.2300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.139;QD=23.31;ReadPosRankSum=2.406;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3940,387,0 chrXV 629011 . C T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.49;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4614,475,0 chrXV 630082 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.60;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3468,366,0 chrXV 630687 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.25;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1293,138,0 chrXV 630812 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.56;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1928,201,0 chrXV 630899 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=27.35;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2248,228,0 chrXV 630972 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.37;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3103,327,0 chrXV 631072 . T G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=160;Dels=0.00;FS=5.199;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.555;QD=20.95;ReadPosRankSum=3.195;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:3352,357,0 chrXV 631073 . C A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.35;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3553,366,0 chrXV 631653 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=5.107;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.419;QD=21.80;ReadPosRankSum=1.714;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4099,444,0 chrXV 631958 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2922,309,0 chrXV 632289 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.55;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3347,343,0 chrXV 632436 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=8.5054;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.079;QD=23.55;ReadPosRankSum=2.397;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3297,357,0 chrXV 632634 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.63;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3588,381,0 chrXV 632889 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2794,288,0 chrXV 633453 . T C 5550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=230;Dels=0.00;FS=7.309;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.016;QD=24.13;ReadPosRankSum=2.428;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5550,571,0 chrXV 633695 . T G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3481,381,0 chrXV 633727 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4300;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.50;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3494,361,0 chrXV 634307 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2581,267,0 chrXV 634711 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.45;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3692,387,0 chrXV 634951 . A G 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=3.048;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.076;QD=23.68;ReadPosRankSum=2.389;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1975,210,0 chrXV 635682 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=146;Dels=0.00;FS=10.454;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.517;QD=24.66;ReadPosRankSum=2.897;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3601,373,0 chrXV 635897 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5692;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3263,339,0 chrXV 636791 . A G 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.027;QD=23.32;ReadPosRankSum=1.677;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1502,162,0 chrXV 636833 . C A 533 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=23.17;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:60:566,60,0 chrXV 636908 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.35;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1351,138,0 chrXV 637584 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4753;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.46;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4200,453,0 chrXV 637878 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.0494;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=23.25;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4836,490,0 chrXV 637893 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.34;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4515,466,0 chrXV 637894 . T G 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=222;Dels=0.00;FS=10.074;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.190;QD=19.37;ReadPosRankSum=2.851;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4300,462,0 chrXV 637926 . C A 4832.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.30;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4832,508,0 chrXV 638136 . T C 6585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=282;Dels=0.00;FS=11.953;HaplotypeScore=16.5815;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.534;QD=23.35;ReadPosRankSum=3.750;SB=-3.454e+03 GT:AD:DP:GQ:PL 1/1:5,274:282:99:6585,706,0 chrXV 638499 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.46;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3386,352,0 chrXV 638526 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.31;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3268,339,0 chrXV 638603 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=2.736;HaplotypeScore=13.2961;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.440;QD=21.91;ReadPosRankSum=2.340;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2991,321,0 chrXV 638733 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=59.0425;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.13;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3073,318,0 chrXV 639000 . G A 5629.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.1797;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.36;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5629,580,0 chrXV 639299 . T C 5697.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.79;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5697,592,0 chrXV 639307 . T C 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=5.212;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.435;QD=22.17;ReadPosRankSum=1.679;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5763,604,0 chrXV 639445 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.07;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4112,421,0 chrXV 639610 . T G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5097;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.663;QD=23.65;ReadPosRankSum=2.391;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:3036,321,0 chrXV 639717 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=3.789;HaplotypeScore=13.9691;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.991;QD=23.03;ReadPosRankSum=1.646;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4630,513,0 chrXV 639978 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.589;QD=24.10;ReadPosRankSum=1.697;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4819,505,0 chrXV 640056 . G T 5758.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5758,589,0 chrXV 640481 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.48;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2726,285,0 chrXV 640881 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.55;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3552,375,0 chrXV 641229 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.57;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2743,282,0 chrXV 641425 . G T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.70;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4497,463,0 chrXV 642138 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.37;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3535,381,0 chrXV 642164 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.365;QD=21.44;ReadPosRankSum=1.687;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3280,342,0 chrXV 642215 . A T 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.830;QD=21.65;ReadPosRankSum=1.637;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3194,330,0 chrXV 642286 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.09;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3788,408,0 chrXV 642380 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.73;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3860,408,0 chrXV 642716 . G A 6285.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=26.08;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:6285,637,0 chrXV 643206 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2991,306,0 chrXV 643604 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2485,255,0 chrXV 644459 . C G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=24.44;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4522,475,0 chrXV 644578 . C T 5545.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.87;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5545,568,0 chrXV 645045 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2936,298,0 chrXV 645672 . G C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3352,354,0 chrXV 646327 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4351,442,0 chrXV 652034 . G T 2544 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2577,273,0 chrXV 653760 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.70;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4051,415,0 chrXV 653775 . G T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.56;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3911,411,0 chrXV 655136 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2942,303,0 chrXV 656264 . G C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3814;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.92;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3613,384,0 chrXV 656567 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.97;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3272,337,0 chrXV 658744 . G A 5037.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.65;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5037,541,0 chrXV 659697 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=136;Dels=0.00;FS=7.251;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.046;QD=21.85;ReadPosRankSum=2.413;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,131:136:99:3004,318,0 chrXV 660199 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.305;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.710;QD=22.17;ReadPosRankSum=1.675;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2738,291,0 chrXV 660208 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.93;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2643,282,0 chrXV 660805 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4279,445,0 chrXV 662272 . C A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.98;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5419,571,0 chrXV 663812 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1519,162,0 chrXV 664259 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.89;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2505,261,0 chrXV 664726 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=24.36;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4312,459,0 chrXV 669720 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.26;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3906,400,0 chrXV 670051 . C A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.38;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4563,466,0 chrXV 670150 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.674;QD=22.24;ReadPosRankSum=1.626;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2947,309,0 chrXV 670200 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.84;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3411,352,0 chrXV 670328 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2576,282,0 chrXV 670522 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.45;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3597,378,0 chrXV 670894 . A T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3664,379,0 chrXV 670961 . T A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.20;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3301,342,0 chrXV 671981 . C A 4295.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.9745;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.73;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4295,445,0 chrXV 672026 . C G 4446.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0281;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.43;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4446,466,0 chrXV 672196 . C A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.63;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3843,397,0 chrXV 673654 . A T 2701 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.33;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2734,285,0 chrXV 675070 . A C 2802 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.78;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2835,297,0 chrXV 675191 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.518;QD=25.05;ReadPosRankSum=1.625;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2463,258,0 chrXV 675246 . T C 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.004;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.354;QD=23.78;ReadPosRankSum=1.693;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2149,228,0 chrXV 675258 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.83;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1892,195,0 chrXV 675643 . A T 2209 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.99;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2242,228,0 chrXV 675665 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.16;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2303,246,0 chrXV 675701 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.47;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2325,243,0 chrXV 675894 . C G 2782 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.06;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2815,294,0 chrXV 676340 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=26.63;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3515,372,0 chrXV 676391 . A G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=7.2066;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.241;QD=24.14;ReadPosRankSum=1.705;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3099,327,0 chrXV 676406 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.629;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.690;QD=23.72;ReadPosRankSum=1.701;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2761,294,0 chrXV 676532 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.61;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4037,421,0 chrXV 676724 . C T 5078.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=23.5743;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.17;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5078,526,0 chrXV 676799 . C T 7192.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.28;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7192,745,0 chrXV 676817 . A G 6928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=325;Dels=0.00;FS=8.479;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.763;QD=21.32;ReadPosRankSum=2.427;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:2,321:325:99:6928,757,0 chrXV 677286 . G A 5820.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=22.3578;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.19;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5820,628,0 chrXV 677365 . C T 6607.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=21.6499;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.72;SB=-3.895e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:6607,679,0 chrXV 677733 . C G 4413.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0215;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.87;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4413,471,0 chrXV 677846 . T A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.51;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4256,442,0 chrXV 678027 . C G 1428 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.64;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1461,156,0 chrXV 678070 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=22.78;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1673,177,0 chrXV 678086 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=23.07;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1717,180,0 chrXV 678099 . A C 1520 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.54;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1553,174,0 chrXV 678100 . C G 1507 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1540,171,0 chrXV 678625 . A T 2684 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=27.67;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2717,276,0 chrXV 678705 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.15;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2186,222,0 chrXV 678832 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.67;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3996,432,0 chrXV 678936 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4984;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=24.06;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3369,343,0 chrXV 679042 . C A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=26.39;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4275,439,0 chrXV 679088 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.353;QD=21.48;ReadPosRankSum=1.700;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2353,252,0 chrXV 679101 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.19;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2131,219,0 chrXV 679386 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.5824;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.877;QD=24.97;ReadPosRankSum=1.644;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3945,417,0 chrXV 679485 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=176;Dels=0.00;FS=3.035;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.244;QD=22.11;ReadPosRankSum=2.408;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3891,406,0 chrXV 679488 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=183;Dels=0.00;FS=9.137;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.329;QD=21.51;ReadPosRankSum=3.297;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:3936,414,0 chrXV 679794 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.3310;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.37;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4264,442,0 chrXV 679983 . C T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.68;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4831,499,0 chrXV 680430 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.27;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3035,321,0 chrXV 680491 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4987;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.55;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3290,334,0 chrXV 680797 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.244;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.062;QD=20.95;ReadPosRankSum=1.658;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2002,210,0 chrXV 680922 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.24;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1681,174,0 chrXV 680951 . T A 1246 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.48;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1279,138,0 chrXV 681208 . A G 593 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:626,66,0 chrXV 681705 . G A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.58;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4817,522,0 chrXV 682254 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3180;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=23.87;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3652,379,0 chrXV 682318 . A T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=26.03;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3306,357,0 chrXV 682676 . A G 6920.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=26.11;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:6920,724,0 chrXV 682766 . G C 5700.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.3394;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.36;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5700,607,0 chrXV 682961 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4896;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.28;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4027,438,0 chrXV 682981 . G T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.29;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3570,364,0 chrXV 683095 . G T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.96;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5218,538,0 chrXV 683158 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.16;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4704,484,0 chrXV 683189 . C A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5617;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.26;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4780,490,0 chrXV 683295 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=207;Dels=0.00;FS=6.077;HaplotypeScore=9.9144;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.230;QD=20.34;ReadPosRankSum=1.240;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:4210,416,0 chrXV 683302 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8155;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.29;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4160,433,0 chrXV 683351 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.56;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4174,441,0 chrXV 683410 . C T 4953.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.47;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4953,505,0 chrXV 683563 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.00;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3161,322,0 chrXV 683694 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.97;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1878,201,0 chrXV 683698 . A C 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=3.415;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.308;QD=20.18;ReadPosRankSum=1.694;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1869,201,0 chrXV 683731 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.16;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2069,213,0 chrXV 683759 . G T 1795 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1828,186,0 chrXV 683778 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.814;QD=21.01;ReadPosRankSum=1.690;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1798,186,0 chrXV 684078 . T C 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.766;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.637;QD=24.66;ReadPosRankSum=2.389;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:3017,315,0 chrXV 684335 . A G 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.689;QD=22.78;ReadPosRankSum=1.664;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4511,467,0 chrXV 684467 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.1200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4863,522,0 chrXV 684893 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3768,411,0 chrXV 685474 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2222,231,0 chrXV 686417 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=90;Dels=0.00;FS=2.949;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=24.66;ReadPosRankSum=2.338;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,86:90:99:2252,240,0 chrXV 686985 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2242,231,0 chrXV 687317 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=5.459;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.209;QD=24.66;ReadPosRankSum=1.702;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2918,312,0 chrXV 687739 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.178;QD=25.23;ReadPosRankSum=1.709;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3784,399,0 chrXV 688425 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.0880;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.82;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3782,402,0 chrXV 688433 . T A 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.4943;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.919;QD=19.50;ReadPosRankSum=1.679;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3822,385,0 chrXV 688554 . T A 6492.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.18;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6492,661,0 chrXV 688719 . T C 5923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=299;Dels=0.00;FS=12.187;HaplotypeScore=19.5761;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.858;QD=19.81;ReadPosRankSum=3.784;SB=-3.783e+03 GT:AD:DP:GQ:PL 1/1:5,294:299:99:5923,628,0 chrXV 688982 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=12.1073;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.64;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:4326,468,0 chrXV 689078 . A G 4900.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9567;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.27;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4900,528,0 chrXV 689217 . T C 2281 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.34;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2314,243,0 chrXV 689383 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.71;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2577,273,0 chrXV 689599 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=17.4103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.565;QD=24.27;ReadPosRankSum=0.157;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4538,478,0 chrXV 689641 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=178;Dels=0.00;FS=3.030;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.914;QD=22.22;ReadPosRankSum=2.352;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3956,432,0 chrXV 690202 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.3302;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.16;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2787,291,0 chrXV 690359 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3403,360,0 chrXV 690477 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.329;QD=23.12;ReadPosRankSum=1.598;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3015,324,0 chrXV 691288 . A C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=21.93;ReadPosRankSum=2.382;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2423,261,0 chrXV 691480 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2685,282,0 chrXV 691977 . T A 2656 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.30;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2689,279,0 chrXV 692038 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=6.677;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.923;QD=23.17;ReadPosRankSum=1.700;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2535,279,0 chrXV 692169 . A C 1463 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.20;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1496,162,0 chrXV 692189 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.795;QD=21.45;ReadPosRankSum=1.610;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1856,201,0 chrXV 692272 . G T 2201 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2234,240,0 chrXV 692352 . A T 2895 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.53;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2928,300,0 chrXV 695150 . C T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5361,565,0 chrXV 695231 . A G 4370.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.97;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4370,463,0 chrXV 695402 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.86;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3627,378,0 chrXV 698579 . T G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.508;QD=21.63;ReadPosRankSum=1.654;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2932,318,0 chrXV 700514 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.680;QD=22.90;ReadPosRankSum=1.701;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2598,279,0 chrXV 700968 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.96;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5051,552,0 chrXV 701028 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.053;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.781;QD=21.44;ReadPosRankSum=1.698;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4374,457,0 chrXV 701042 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=209;Dels=0.00;FS=3.025;HaplotypeScore=10.5242;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.431;QD=20.50;ReadPosRankSum=2.414;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4285,462,0 chrXV 701137 . C G 5241.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.49;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5241,568,0 chrXV 701156 . T C 5074.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.45;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5074,549,0 chrXV 701208 . C T 5467.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=22.50;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5467,562,0 chrXV 701218 . C A 5557.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.3821;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.14;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5557,568,0 chrXV 701256 . C T 6151.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.9091;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.30;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6151,649,0 chrXV 701365 . T A 6218.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.4536;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.29;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6218,643,0 chrXV 701450 . A G 6354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=281;Dels=0.00;FS=2.932;HaplotypeScore=21.9399;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.016;QD=22.61;ReadPosRankSum=2.423;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:2,277:281:99:6354,688,0 chrXV 703056 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.56;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3772,391,0 chrXV 703124 . C G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.36;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3906,417,0 chrXV 710126 . G T 50.97 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=0.88;SB=-2.698e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:9:83,9,0 chrXV 710606 . T A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.1884;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.72;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4115,424,0 chrXV 711322 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1818,195,0 chrXV 711533 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1829,189,0 chrXV 712214 . C G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.1813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4121,441,0 chrXV 713926 . T C 2786 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2819,303,0 chrXV 715815 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3914,420,0 chrXV 716400 . C T 5584.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.28;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5584,601,0 chrXV 716951 . G C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4162,439,0 chrXV 717052 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4722,487,0 chrXV 717181 . A T 5513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=232;Dels=0.00;FS=3.029;HaplotypeScore=15.3002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.508;QD=23.76;ReadPosRankSum=2.375;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:2,230:232:99:5513,571,0 chrXV 717277 . T C 6736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=19.7393;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.264;QD=22.76;ReadPosRankSum=1.709;SB=-3.940e+03 GT:AD:DP:GQ:PL 1/1:1,294:296:99:6736,715,0 chrXV 717962 . A G 5811.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.2169;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.18;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5811,642,0 chrXV 718180 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=194;Dels=0.00;FS=8.648;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.462;QD=23.82;ReadPosRankSum=2.424;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4621,487,0 chrXV 718222 . T C 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=223;Dels=0.00;FS=8.110;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.008;QD=24.01;ReadPosRankSum=2.404;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:2,216:223:99:5355,576,0 chrXV 720332 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3209,336,0 chrXV 720426 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.33;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2981,324,0 chrXV 720492 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.753;QD=24.54;ReadPosRankSum=1.660;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4712,502,0 chrXV 720923 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=11.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.594;QD=23.55;ReadPosRankSum=2.396;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4356,465,0 chrXV 721121 . C T 5935.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.7733;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.03;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5935,610,0 chrXV 721219 . G T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.28;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4434,451,0 chrXV 721240 . A T 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.4337;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.266;QD=21.09;ReadPosRankSum=1.432;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4387,451,0 chrXV 721322 . G A 5449.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5449,577,0 chrXV 723226 . A C 5645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=25.3132;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.487;QD=23.04;ReadPosRankSum=1.703;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,241:245:99:5645,601,0 chrXV 724989 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.50;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1405,150,0 chrXV 725113 . T C 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.668;QD=24.68;ReadPosRankSum=2.381;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1810,195,0 chrXV 726294 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.37;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3552,384,0 chrXV 726893 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2823,300,0 chrXV 727008 . G A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4218,433,0 chrXV 729380 . A T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3898,400,0 chrXV 730011 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.10;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2805,291,0 chrXV 730479 . G A 5831.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5831,592,0 chrXV 732609 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.390;QD=23.07;ReadPosRankSum=1.712;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3991,432,0 chrXV 733519 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.40;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2815,288,0 chrXV 733533 . T A 2525 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.82;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2558,264,0 chrXV 733608 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.39;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3235,333,0 chrXV 733667 . C G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.92;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3563,375,0 chrXV 733949 . C G 3386.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.30;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3386,360,0 chrXV 733953 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=1.039;QD=21.79;ReadPosRankSum=1.665;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3377,357,0 chrXV 734684 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1368,141,0 chrXV 735107 . T A 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=2.844;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=26.22;ReadPosRankSum=2.371;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3277,334,0 chrXV 735678 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.46;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3792,402,0 chrXV 735873 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.57;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3537,358,0 chrXV 735877 . G T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.72;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3460,358,0 chrXV 736963 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.33;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3571,375,0 chrXV 736990 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=153;Dels=0.00;FS=6.465;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.001;QD=24.15;ReadPosRankSum=2.401;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3695,402,0 chrXV 741440 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.183;QD=23.43;ReadPosRankSum=1.651;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3983,429,0 chrXV 741453 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.54;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4072,430,0 chrXV 745301 . G C 2186 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=42.0318;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.18;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2219,237,0 chrXV 747552 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3763,390,0 chrXV 748605 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.13;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3695,399,0 chrXV 748650 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.57;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3517,358,0 chrXV 748655 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.18;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3217,351,0 chrXV 748737 . T G 4483.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.10;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4483,475,0 chrXV 751144 . C A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3856,397,0 chrXV 751857 . G T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.51;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4141,433,0 chrXV 757677 . C T 5470.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.1707;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5470,562,0 chrXV 757746 . A G 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=3.004;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.792;QD=23.48;ReadPosRankSum=2.302;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4719,493,0 chrXV 757952 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.99;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3719,385,0 chrXV 758119 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=130;Dels=0.00;FS=3.042;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.474;QD=17.26;ReadPosRankSum=2.411;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2277,246,0 chrXV 758245 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.4925;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.97;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3835,400,0 chrXV 758539 . A G 4593.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4541;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.56;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4593,490,0 chrXV 759034 . G A 5482.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.56;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5482,583,0 chrXV 759061 . G A 5700.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.85;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5700,595,0 chrXV 759214 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.98;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3929,420,0 chrXV 759381 . A G 2702 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2735,285,0 chrXV 760114 . A G 6776.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.6463;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.61;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6776,733,0 chrXV 761032 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.74;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4392,454,0 chrXV 761321 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2319,249,0 chrXV 762315 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=144;Dels=0.00;FS=6.049;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.958;QD=23.67;ReadPosRankSum=2.909;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3408,366,0 chrXV 762399 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=7.415;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.692;QD=23.11;ReadPosRankSum=2.311;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3674,393,0 chrXV 762597 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.59;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3861,388,0 chrXV 762665 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=199;Dels=0.00;FS=6.060;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.722;QD=23.98;ReadPosRankSum=2.924;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4772,508,0 chrXV 763017 . C T 6171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=24.9167;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.648;QD=24.20;ReadPosRankSum=1.779;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:6171,643,0 chrXV 763368 . A C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.96;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3306,345,0 chrXV 763613 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.52;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3408,352,0 chrXV 763671 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.04;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2839,288,0 chrXV 763679 . C G 2840 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.45;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2873,309,0 chrXV 763978 . C G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=125;Dels=0.00;FS=3.859;HaplotypeScore=12.8318;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.084;QD=22.10;ReadPosRankSum=-0.559;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2796,297,0 chrXV 764523 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.524;QD=24.29;ReadPosRankSum=1.678;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3167,336,0 chrXV 764698 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.97;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2813,291,0 chrXV 764846 . A G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=106;Dels=0.00;FS=9.089;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.259;QD=22.89;ReadPosRankSum=3.356;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:4,101:106:99:2459,267,0 chrXV 765140 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3005,309,0 chrXV 765566 . T C 3157 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3190,351,0 chrXV 765690 . A C 2219 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.12;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2252,240,0 chrXV 765710 . T C 2411 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.60;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2444,258,0 chrXV 765854 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.17;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3901,406,0 chrXV 766151 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.75;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4702,493,0 chrXV 766225 . G T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.38;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4185,427,0 chrXV 766681 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1050,108,0 chrXV 766799 . G A 560 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:593,63,0 chrXV 767198 . C G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.99;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3651,387,0 chrXV 768052 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.33;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3892,409,0 chrXV 768716 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.34;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4963,523,0 chrXV 777196 . G A 6207.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=27.0441;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.93;SB=-3.718e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6207,643,0 chrXV 779974 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.77;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1742,180,0 chrXV 780008 . C A 1698 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.97;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1731,186,0 chrXV 780071 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.02;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1883,204,0 chrXV 780072 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.19;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2008,213,0 chrXV 780180 . T C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=3.052;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.169;QD=22.76;ReadPosRankSum=2.372;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2195,231,0 chrXV 780221 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.09;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2015,207,0 chrXV 780235 . T A 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=101;Dels=0.00;FS=2.942;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.529;QD=20.44;ReadPosRankSum=2.376;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2097,222,0 chrXV 781811 . G C 4416.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1569;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.13;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4416,463,0 chrXV 782474 . G C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3550,370,0 chrXV 783564 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.05;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1831,195,0 chrXV 785050 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4024,421,0 chrXV 785154 . T G 4417.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.81;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4417,469,0 chrXV 785674 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4379,457,0 chrXV 789434 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=117;Dels=0.00;FS=5.593;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.122;QD=18.45;ReadPosRankSum=2.905;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2192,228,0 chrXV 789595 . T C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=123;Dels=0.00;FS=2.850;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.643;QD=20.91;ReadPosRankSum=2.288;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2605,273,0 chrXV 789672 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.02;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3083,333,0 chrXV 789915 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2396,249,0 chrXV 790680 . A C 4467.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.7498;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4467,469,0 chrXV 791600 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.457;QD=24.58;ReadPosRankSum=1.704;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3105,327,0 chrXV 791764 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.299;QD=24.77;ReadPosRankSum=1.684;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3591,381,0 chrXV 791841 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3063,321,0 chrXV 792081 . G A 5609.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.50;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5609,595,0 chrXV 792138 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.0380;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.319;QD=22.00;ReadPosRankSum=0.358;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3982,429,0 chrXV 794469 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=140;Dels=0.00;FS=3.009;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.989;QD=22.75;ReadPosRankSum=2.378;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3218,336,0 chrXV 794866 . T A 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=4.228;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.706;QD=22.70;ReadPosRankSum=1.629;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3098,321,0 chrXV 795030 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=120;Dels=0.00;FS=10.296;HaplotypeScore=11.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.790;QD=21.84;ReadPosRankSum=2.908;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2654,288,0 chrXV 795596 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.34;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3093,316,0 chrXV 795939 . G C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3690,402,0 chrXV 796728 . T C 4947.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.18;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4947,534,0 chrXV 796798 . C G 4325.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.18;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4325,451,0 chrXV 796810 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.85;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4004,435,0 chrXV 798206 . A T 6166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.825;QD=20.97;ReadPosRankSum=1.697;SB=-3.205e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6166,625,0 chrXV 798213 . G C 5745.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.47;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:5745,610,0 chrXV 798788 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2506,258,0 chrXV 798886 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.78;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2887,294,0 chrXV 799117 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2386,240,0 chrXV 801745 . G A 6061.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.9559;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.94;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6061,625,0 chrXV 802185 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.85;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3529,358,0 chrXV 802360 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=24.16;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2642,267,0 chrXV 802374 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=24.93;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2576,267,0 chrXV 802400 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.39;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2277,243,0 chrXV 802678 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.47;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4482,469,0 chrXV 802722 . G C 4321.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.86;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4321,459,0 chrXV 802733 . G A 4466.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.68;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4466,460,0 chrXV 802913 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.1974;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.89;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3928,403,0 chrXV 804146 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1873,192,0 chrXV 804694 . C T 4890.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9650;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.47;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4890,508,0 chrXV 805074 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.27;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2305,237,0 chrXV 806960 . G T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3861;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.14;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3669,384,0 chrXV 807285 . T G 3594.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.64;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3594,387,0 chrXV 808193 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=112;Dels=0.00;FS=3.014;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.324;QD=22.98;ReadPosRankSum=2.405;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2607,273,0 chrXV 808281 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.16;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3229,348,0 chrXV 810364 . G T 3093 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3126,324,0 chrXV 810448 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=8.901;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.545;QD=26.12;ReadPosRankSum=2.398;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3761,393,0 chrXV 811848 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.11;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4596,472,0 chrXV 816215 . C G 3003 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,120:124:99:3036,333,0 chrXV 816620 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3191,339,0 chrXV 816745 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=5.336;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.014;QD=24.93;ReadPosRankSum=1.690;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4088,427,0 chrXV 818089 . C T 4864.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4864,502,0 chrXV 818506 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.693;DP=149;Dels=0.00;FS=11.950;HaplotypeScore=14.5599;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.552;QD=23.08;ReadPosRankSum=3.566;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:5,143:149:99:3439,348,0 chrXV 818965 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.86;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3362,346,0 chrXV 819020 . G T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3444,352,0 chrXV 819084 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.369;QD=24.32;ReadPosRankSum=1.675;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3000,312,0 chrXV 819302 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.497;QD=23.99;ReadPosRankSum=2.366;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3526,372,0 chrXV 819348 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.12;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3449,355,0 chrXV 819402 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.40;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3370,351,0 chrXV 819414 . G C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.34;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3351,349,0 chrXV 819520 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.76;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4457,460,0 chrXV 820165 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=2.964;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.509;QD=23.82;ReadPosRankSum=2.385;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3621,381,0 chrXV 820227 . C G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4247,448,0 chrXV 820353 . C T 5585.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.0805;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.27;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:5585,571,0 chrXV 820399 . T C 5716.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.74;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5716,604,0 chrXV 820504 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3687,396,0 chrXV 820643 . A T 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.197;DP=109;Dels=0.00;FS=5.200;HaplotypeScore=7.4435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.870;QD=22.02;ReadPosRankSum=3.294;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:4,105:109:99:2433,249,0 chrXV 820854 . C G 1547 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=25.36;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1580,165,0 chrXV 820953 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=74;Dels=0.00;FS=2.756;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.117;QD=20.38;ReadPosRankSum=2.383;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1541,168,0 chrXV 821142 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3280,345,0 chrXV 821187 . G T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3830,405,0 chrXV 821223 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4249,433,0 chrXV 821660 . T C 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=178;Dels=0.00;FS=5.896;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.689;QD=24.60;ReadPosRankSum=2.938;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4379,469,0 chrXV 821758 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2507,264,0 chrXV 822096 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2631,276,0 chrXV 822154 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3278,351,0 chrXV 822346 . A C 2331 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2364,246,0 chrXV 822927 . T G 5708.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.489;DP=373;Dels=0.00;FS=16.830;HaplotypeScore=38.6906;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=1;MQRankSum=1.604;QD=15.30;ReadPosRankSum=9.318;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:67,306:373:99:5708,543,0 chrXV 823408 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.25;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2893,309,0 chrXV 823625 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.58;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3104,324,0 chrXV 823902 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.49;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3441,355,0 chrXV 823924 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.46;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2939,300,0 chrXV 823938 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.25;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2516,270,0 chrXV 823983 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.370;QD=19.90;ReadPosRankSum=1.709;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3078,330,0 chrXV 824184 . G T 2707 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8668;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.75;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2740,285,0 chrXV 824472 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2683,285,0 chrXV 824520 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=8.349;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.318;QD=25.59;ReadPosRankSum=2.346;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3660,385,0 chrXV 824910 . G A 687 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.21;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:75:720,75,0 chrXV 824928 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.237;QD=20.49;ReadPosRankSum=2.354;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1078,111,0 chrXV 825198 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2605,285,0 chrXV 825345 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3471,366,0 chrXV 826024 . C T 2363 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.90;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2396,264,0 chrXV 826032 . A G 2102 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=120;Dels=0.00;FS=12.869;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.300;QD=17.52;ReadPosRankSum=3.370;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2135,234,0 chrXV 826034 . C T 2242 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.16;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2275,237,0 chrXV 826120 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=2.804;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.492;QD=24.11;ReadPosRankSum=2.375;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3215,342,0 chrXV 826212 . A T 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=3.992;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.973;QD=24.84;ReadPosRankSum=1.693;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4422,454,0 chrXV 826325 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5107,517,0 chrXV 826538 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.44;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4351,442,0 chrXV 826784 . A G 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.780;DP=185;Dels=0.00;FS=15.655;HaplotypeScore=8.2295;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.029;QD=23.74;ReadPosRankSum=3.806;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:5,180:185:99:4392,471,0 chrXV 827016 . A T 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=177;Dels=0.00;FS=10.273;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.426;QD=24.67;ReadPosRankSum=2.960;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:4367,448,0 chrXV 827048 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.257;QD=23.90;ReadPosRankSum=1.673;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:4255,451,0 chrXV 827194 . A T 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.548;HaplotypeScore=13.1313;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.211;QD=24.77;ReadPosRankSum=1.682;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5127,523,0 chrXV 827284 . T A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0343;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.58;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3962,426,0 chrXV 827386 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.5120;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.07;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4526,472,0 chrXV 828050 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=178;Dels=0.00;FS=11.919;HaplotypeScore=22.0181;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.468;QD=25.16;ReadPosRankSum=2.380;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4479,472,0 chrXV 828529 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=4.088;HaplotypeScore=9.5286;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.857;QD=21.04;ReadPosRankSum=1.694;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3872,414,0 chrXV 828544 . A T 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.5753;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.383;QD=21.84;ReadPosRankSum=1.659;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4149,427,0 chrXV 828571 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9847;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.30;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3532,378,0 chrXV 828897 . G A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.92;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4510,460,0 chrXV 828922 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.928;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.711;QD=24.74;ReadPosRankSum=2.421;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4256,456,0 chrXV 829039 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.291;HaplotypeScore=6.3851;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.537;QD=23.91;ReadPosRankSum=1.602;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3825,408,0 chrXV 829111 . A G 3157 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.39;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3190,342,0 chrXV 829210 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4850,499,0 chrXV 830506 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=5.217;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.619;QD=23.58;ReadPosRankSum=1.704;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2933,309,0 chrXV 830723 . A T 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.130;QD=26.31;ReadPosRankSum=1.689;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:2138,219,0 chrXV 830744 . T A 1943 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=26.26;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1976,204,0 chrXV 830783 . C A 1453 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=23.44;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1486,153,0 chrXV 830785 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=22.35;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,153,0 chrXV 830894 . C A 804 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=16.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:84:837,84,0 chrXV 831035 . C T 103.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=8.61;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:136,15,0 chrXV 831051 . C T 588 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.70;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:66:621,66,0 chrXV 832096 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.66;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4242,430,0 chrXV 832169 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3111,316,0 chrXV 832222 . G T 2888 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2921,297,0 chrXV 832326 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.71;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3980,412,0 chrXV 832546 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.37;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2896,294,0 chrXV 832576 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=23.19;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2885,297,0 chrXV 832589 . C G 2504 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.59;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2537,267,0 chrXV 832602 . C G 2442 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.05;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2475,264,0 chrXV 832664 . T A 1810 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.51;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1843,189,0 chrXV 832710 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.12;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2542,270,0 chrXV 832805 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=26.59;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3803,394,0 chrXV 832871 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.822;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.799;QD=23.10;ReadPosRankSum=2.396;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3221,345,0 chrXV 832893 . A C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=3.646;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.158;QD=21.62;ReadPosRankSum=1.671;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3653,390,0 chrXV 833083 . A G 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=209;Dels=0.00;FS=10.582;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.166;QD=24.21;ReadPosRankSum=2.868;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:5059,535,0 chrXV 833904 . C T 6572.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=17.4588;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.13;SB=-3.661e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6572,685,0 chrXV 834436 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.67;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3003,315,0 chrXV 834445 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.97;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3158,327,0 chrXV 834614 . G A 5440.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.4716;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.95;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5440,556,0 chrXV 834738 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.9264;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.71;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5178,532,0 chrXV 834976 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.71;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4053,432,0 chrXV 836272 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.3522;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.32;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3085,321,0 chrXV 836419 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=2.843;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-1.020;QD=24.96;ReadPosRankSum=2.360;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4119,424,0 chrXV 836722 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7035;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.208;QD=25.43;ReadPosRankSum=1.633;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4476,480,0 chrXV 836747 . A C 3638.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.88;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3638,396,0 chrXV 836858 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.91;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3723,399,0 chrXV 836879 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4017;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.36;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4058,424,0 chrXV 837247 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.94;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3326,340,0 chrXV 837437 . G T 2882 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.0246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2915,294,0 chrXV 837685 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.274;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.488;QD=25.33;ReadPosRankSum=1.651;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,84:87:99:2237,234,0 chrXV 838080 . A C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.192;QD=23.89;ReadPosRankSum=1.631;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4109,447,0 chrXV 838118 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.130;QD=23.54;ReadPosRankSum=1.710;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3767,402,0 chrXV 838573 . C T 5181.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.91;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5181,547,0 chrXV 838975 . A T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.9839;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.87;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3962,420,0 chrXV 839011 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.49;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3600,376,0 chrXV 839037 . A T 2935 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.67;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2968,315,0 chrXV 839325 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.44;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2524,261,0 chrXV 839346 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.65;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2306,234,0 chrXV 839384 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.52;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2262,231,0 chrXV 839433 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2672,273,0 chrXV 840149 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=25.28;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3741,391,0 chrXV 840176 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=8.001;HaplotypeScore=5.9415;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.245;QD=22.47;ReadPosRankSum=2.386;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3505,375,0 chrXV 840184 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=161;Dels=0.00;FS=12.063;HaplotypeScore=11.9884;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.843;QD=21.98;ReadPosRankSum=2.956;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3538,366,0 chrXV 840302 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.66;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3798,405,0 chrXV 840461 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.99;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3873,400,0 chrXV 840663 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.42;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3490,372,0 chrXV 840781 . T A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.73;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3370,349,0 chrXV 840860 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.23;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2941,315,0 chrXV 840872 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.25;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:3148,322,0 chrXV 840945 . T G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.70;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4052,438,0 chrXV 841378 . T G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.90;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4357,465,0 chrXV 841852 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2137,225,0 chrXV 841912 . G T 2795 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.09;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2828,294,0 chrXV 842147 . T A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.37;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3389,351,0 chrXV 843188 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.409;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.881;QD=22.79;ReadPosRankSum=1.692;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3920,423,0 chrXV 843195 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=2.968;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.257;QD=22.83;ReadPosRankSum=2.405;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3835,405,0 chrXV 843367 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.2562;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.306;QD=22.53;ReadPosRankSum=1.647;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2849,300,0 chrXV 843686 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.489;QD=21.68;ReadPosRankSum=1.702;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2504,264,0 chrXV 843831 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=189;Dels=0.00;FS=11.348;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.517;QD=24.03;ReadPosRankSum=2.423;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4541,495,0 chrXV 843866 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.38;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4290,436,0 chrXV 843892 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=10.098;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.114;QD=23.54;ReadPosRankSum=2.374;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3837,402,0 chrXV 843925 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.06;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3992,403,0 chrXV 843952 . C G 4725.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.29;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4725,502,0 chrXV 845260 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=9.3684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3434,363,0 chrXV 845688 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.511;QD=24.48;ReadPosRankSum=1.708;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3500,369,0 chrXV 845796 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.563;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.698;QD=25.46;ReadPosRankSum=1.706;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3411,363,0 chrXV 845838 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=24.54;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3289,334,0 chrXV 845840 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=24.06;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3296,340,0 chrXV 846014 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=24.18;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3578,370,0 chrXV 846027 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.24;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3263,333,0 chrXV 846635 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0588;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.414;QD=22.47;ReadPosRankSum=1.680;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3066,330,0 chrXV 846762 . G T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.6446;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.89;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3368,349,0 chrXV 847503 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.04;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3162,330,0 chrXV 847521 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7810;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.32;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3111,316,0 chrXV 847692 . G T 3117 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.75;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3150,319,0 chrXV 847716 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.99;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3001,312,0 chrXV 848376 . C G 2555 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=27.18;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2588,267,0 chrXV 848406 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=25.09;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2893,309,0 chrXV 848537 . A G 2631 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.30;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2664,291,0 chrXV 848614 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.54;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3945,409,0 chrXV 848635 . G C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=22.20;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3907,412,0 chrXV 848657 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.93;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3618,381,0 chrXV 848684 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6929;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.68;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2825,291,0 chrXV 848740 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=15.9518;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.79;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2363,243,0 chrXV 848780 . G C 2987 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.03;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3020,321,0 chrXV 848800 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.707;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.133;QD=19.62;ReadPosRankSum=1.711;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3212,336,0 chrXV 849171 . C T 9060.01 filter AC=2;AF=1.00;AN=2;DP=405;Dels=0.00;FS=0.000;HaplotypeScore=12.7222;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.37;SB=-5.480e+03 GT:AD:DP:GQ:PL 1/1:0,403:405:99:9060,917,0 chrXV 849243 . T C 12117.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=491;Dels=0.00;FS=6.431;HaplotypeScore=35.1040;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.465;QD=24.68;ReadPosRankSum=2.394;SB=-6.329e+03 GT:AD:DP:GQ:PL 1/1:2,486:491:99:12117,1259,0 chrXV 849394 . C T 2137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=26.1439;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.401;QD=5.41;ReadPosRankSum=1.594;SB=-9.260e+02 GT:AD:DP:GQ:PL 0/1:265,129:395:99:2167,0,5029 chrXV 849537 . A T 7438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=314;Dels=0.00;FS=3.670;HaplotypeScore=13.9945;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.322;QD=23.69;ReadPosRankSum=1.721;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:1,311:314:99:7438,813,0 chrXV 849618 . T G 8817.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=371;Dels=0.00;FS=5.939;HaplotypeScore=21.3896;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.313;QD=23.77;ReadPosRankSum=2.938;SB=-4.639e+03 GT:AD:DP:GQ:PL 1/1:3,366:371:99:8817,958,0 chrXV 849841 . T C 10518.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.725;DP=503;Dels=0.00;FS=0.000;HaplotypeScore=11.0460;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.055;QD=20.91;ReadPosRankSum=1.684;SB=-6.315e+03 GT:AD:DP:GQ:PL 1/1:1,501:503:99:10518,1141,0 chrXV 849847 . A G 10030.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=502;Dels=0.00;FS=6.223;HaplotypeScore=15.0959;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.167;QD=19.98;ReadPosRankSum=2.395;SB=-6.464e+03 GT:AD:DP:GQ:PL 1/1:2,497:502:99:10030,1078,0 chrXV 850123 . A G 12625.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.093;DP=535;Dels=0.00;FS=10.590;HaplotypeScore=34.5124;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.386;QD=23.60;ReadPosRankSum=4.179;SB=-5.400e+03 GT:AD:DP:GQ:PL 1/1:6,527:535:99:12625,1369,0 chrXV 850266 . G C 10204.01 filter AC=2;AF=1.00;AN=2;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=22.5982;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.68;SB=-5.118e+03 GT:AD:DP:GQ:PL 1/1:0,446:450:99:10204,1087,0 chrXV 850405 . C T 10505.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=23.3960;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.75;SB=-4.774e+03 GT:AD:DP:GQ:PL 1/1:0,408:408:99:10505,1070,0 chrXV 850507 . C T 13134.01 filter AC=2;AF=1.00;AN=2;DP=494;Dels=0.00;FS=0.000;HaplotypeScore=16.4787;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.59;SB=-6.442e+03 GT:AD:DP:GQ:PL 1/1:0,491:494:99:13134,1340,0 chrXV 850723 . A G 10323.01 filter AC=2;AF=1.00;AN=2;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=19.7048;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.68;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,436:436:99:10323,1078,0 chrXV 850837 . G T 8249.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.48;SB=-4.253e+03 GT:AD:DP:GQ:PL 1/1:0,383:384:99:8249,844,0 chrXV 850845 . A T 8299.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=384;Dels=0.00;FS=5.553;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.008;QD=21.61;ReadPosRankSum=2.919;SB=-4.336e+03 GT:AD:DP:GQ:PL 1/1:3,380:384:99:8299,850,0 chrXV 850902 . T C 7827.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=362;Dels=0.00;FS=2.963;HaplotypeScore=15.7873;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.525;QD=21.62;ReadPosRankSum=2.402;SB=-4.052e+03 GT:AD:DP:GQ:PL 1/1:2,356:362:99:7827,841,0 chrXV 851026 . C T 9581.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=12.2495;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.28;SB=-4.811e+03 GT:AD:DP:GQ:PL 1/1:0,376:379:99:9581,980,0 chrXV 851249 . T A 8574.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=380;Dels=0.00;FS=6.055;HaplotypeScore=26.9727;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.982;QD=22.56;ReadPosRankSum=2.966;SB=-4.739e+03 GT:AD:DP:GQ:PL 1/1:3,377:380:99:8574,916,0 chrXV 851373 . T C 8039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.435;DP=329;Dels=0.00;FS=7.439;HaplotypeScore=14.2717;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=-0.831;QD=24.43;ReadPosRankSum=2.427;SB=-3.702e+03 GT:AD:DP:GQ:PL 1/1:2,327:329:99:8039,874,0 chrXV 852451 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.92;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2256,246,0 chrXV 852538 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3325,351,0 chrXV 852621 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.664;QD=22.60;ReadPosRankSum=1.674;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2768,288,0 chrXV 852634 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.63;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2715,285,0 chrXV 852640 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7796;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.61;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2818,303,0 chrXV 852729 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.52;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4266,436,0 chrXV 853231 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.45;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2756,285,0 chrXV 853264 . G T 2904 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.25;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2937,300,0 chrXV 853371 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.286;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.226;QD=24.60;ReadPosRankSum=1.705;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3256,345,0 chrXV 853861 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.10;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3687,379,0 chrXV 854115 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.939;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=-1.420;QD=25.00;ReadPosRankSum=2.400;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2483,264,0 chrXV 854117 . T G 2425 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=25.80;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2458,264,0 chrXV 854178 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=25.89;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2493,255,0 chrXV 854615 . A T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=2.60;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:44,6,0 chrXV 854799 . G A 1060 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=21.63;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1093,114,0 chrXV 854873 . A G 780 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.67;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:87:813,87,0 chrXV 854892 . A G 914 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.76;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:947,99,0 chrXV 854955 . T C 479 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.83;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:512,54,0 chrXV 855177 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=27.58;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3668,382,0 chrXV 855289 . C T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.66;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4266,436,0 chrXV 855309 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9898;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.75;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4391,445,0 chrXV 855498 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=26.97;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4262,430,0 chrXV 856113 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.46;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4411,451,0 chrXV 856254 . G A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.43;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4104,435,0 chrXV 857553 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3315,340,0 chrXV 858511 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=143;Dels=0.00;FS=5.622;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.255;QD=22.91;ReadPosRankSum=2.951;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3276,351,0 chrXV 858879 . A T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.0199;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.08;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4639,472,0 chrXV 859245 . A G 5009.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.9906;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.85;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5009,540,0 chrXV 859338 . T G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=10.288;HaplotypeScore=13.4785;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.787;QD=18.74;ReadPosRankSum=2.387;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3655,393,0 chrXV 859618 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.5907;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=13.74;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:2452,267,0 chrXV 859706 . A G 6066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.804;QD=22.89;ReadPosRankSum=2.431;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:6066,640,0 chrXV 859857 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.387;DP=213;Dels=0.00;FS=12.701;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.207;QD=23.57;ReadPosRankSum=4.275;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:7,206:213:99:5020,538,0 chrXV 860178 . G A 4924.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4924,499,0 chrXV 860275 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.443;QD=25.08;ReadPosRankSum=1.713;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4539,475,0 chrXV 860337 . T A 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.718;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.872;QD=24.92;ReadPosRankSum=1.709;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3813,394,0 chrXV 860397 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.601;QD=21.04;ReadPosRankSum=1.708;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3063,339,0 chrXV 860578 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=3.502;HaplotypeScore=105.9561;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.588;QD=20.67;ReadPosRankSum=1.639;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2369,249,0 chrXV 860613 . A C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=124;Dels=0.00;FS=5.404;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.472;QD=20.06;ReadPosRankSum=2.943;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2521,264,0 chrXV 860651 . T G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=5.657;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.353;QD=18.39;ReadPosRankSum=1.698;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:1964,213,0 chrXV 860684 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8638;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.98;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2031,210,0 chrXV 860762 . C A 962 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:995,102,0 chrXV 860902 . A G 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=9.0105;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=1.957;QD=6.19;ReadPosRankSum=-1.621;SB=-9.891e-03 GT:AD:DP:GQ:PL 0/1:3,16:21:28:160,0,28 chrXV 861103 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=5.250;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.267;QD=20.75;ReadPosRankSum=1.629;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1423,153,0 chrXV 861110 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.49;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1559,162,0 chrXV 861195 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.58;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3300,342,0 chrXV 861653 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.352;QD=22.04;ReadPosRankSum=1.628;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2964,321,0 chrXV 861655 . T C 3031 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.32;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3064,321,0 chrXV 862092 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.32;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3748,385,0 chrXV 862212 . C G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.11;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3444,366,0 chrXV 862224 . A T 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=4.006;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.592;QD=22.81;ReadPosRankSum=1.711;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3672,376,0 chrXV 862275 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.358;HaplotypeScore=8.7008;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.022;QD=21.26;ReadPosRankSum=1.665;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3316,360,0 chrXV 862485 . C G 2716 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.04;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2749,297,0 chrXV 862815 . G C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1225;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.58;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4079,435,0 chrXV 863103 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2808,300,0 chrXV 863148 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3027,312,0 chrXV 863403 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2941,303,0 chrXV 863468 . C A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3375,354,0 chrXV 863724 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2850,300,0 chrXV 863813 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.57;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3031,309,0 chrXV 863988 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2988,318,0 chrXV 864240 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2794,300,0 chrXV 864477 . A C 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.367;QD=24.18;ReadPosRankSum=1.700;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5271,562,0 chrXV 864723 . G A 5817.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5817,607,0 chrXV 867169 . T G 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=235;Dels=0.00;FS=7.021;HaplotypeScore=17.2960;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.298;QD=25.69;ReadPosRankSum=2.429;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:6037,634,0 chrXV 867347 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.59;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4435,454,0 chrXV 867358 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.546;HaplotypeScore=7.4683;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.713;QD=20.46;ReadPosRankSum=-0.411;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3745,402,0 chrXV 868024 . A G 572 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=16.34;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:605,66,0 chrXV 868038 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=14.61;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:559,57,0 chrXV 868053 . T C 420 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=25.8283;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=11.67;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:453,48,0 chrXV 868056 . C G 365 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=26.7948;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=10.14;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:42:398,42,0 chrXV 868474 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:4855,496,0 chrXV 868576 . C T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.1375;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.22;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5120,544,0 chrXV 868630 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=220;Dels=0.00;FS=6.078;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.619;QD=23.62;ReadPosRankSum=2.885;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:5196,561,0 chrXV 868909 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.74;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1990,204,0 chrXV 869099 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=17.71;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1025,105,0 chrXV 869133 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=13.85;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1113,117,0 chrXV 869134 . A C 1055 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=13.70;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1088,117,0 chrXV 869158 . A C 963 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=11.89;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:996,108,0 chrXV 869170 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=10.78;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:93:906,93,0 chrXV 869174 . T C 794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;MQRankSum=1.689;QD=9.80;ReadPosRankSum=1.689;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:90:827,90,0 chrXV 869184 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=13.07;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1092,114,0 chrXV 869373 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.3741;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=25.13;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4046,412,0 chrXV 869434 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.26;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3615,387,0 chrXV 869435 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.49;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3462,384,0 chrXV 869473 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.36;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4079,415,0 chrXV 869524 . A G 4290.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.51;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4290,456,0 chrXV 869837 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=8.014;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.933;QD=23.39;ReadPosRankSum=2.409;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2886,306,0 chrXV 870333 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.9013;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.638;QD=22.68;ReadPosRankSum=-0.414;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4219,453,0 chrXV 870396 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.688;HaplotypeScore=14.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.611;QD=24.35;ReadPosRankSum=1.572;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4286,442,0 chrXV 870449 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.689;HaplotypeScore=11.0591;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.381;QD=23.46;ReadPosRankSum=1.689;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3753,396,0 chrXV 870516 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3885,414,0 chrXV 871008 . C A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.38;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3325,340,0 chrXV 871819 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.9384;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.95;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2802,291,0 chrXV 872133 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.338;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.882;QD=24.03;ReadPosRankSum=1.669;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2700,285,0 chrXV 872241 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3244,331,0 chrXV 872742 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.70;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4249,436,0 chrXV 872836 . A T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.18;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4582,466,0 chrXV 872988 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=3.873;HaplotypeScore=7.2940;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.527;QD=23.93;ReadPosRankSum=0.785;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3853,397,0 chrXV 873009 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9807;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.01;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3405,354,0 chrXV 873546 . C A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3879,400,0 chrXV 873690 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2685,273,0 chrXV 873804 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2197,222,0 chrXV 873866 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2485,261,0 chrXV 873900 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2457,264,0 chrXV 874238 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.74;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1765,180,0 chrXV 874326 . C A 2164 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=22.31;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2197,228,0 chrXV 874350 . A C 1856 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-1.083;QD=19.33;ReadPosRankSum=1.696;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1889,210,0 chrXV 874352 . T C 1617 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=17.02;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1650,192,0 chrXV 874353 . C T 1627 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.95;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1660,192,0 chrXV 874388 . A T 1688 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.18;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1721,183,0 chrXV 874428 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.058;QD=22.53;ReadPosRankSum=2.392;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1948,204,0 chrXV 874473 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=4.523;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.747;QD=23.89;ReadPosRankSum=1.698;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2470,264,0 chrXV 874666 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4433;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=23.69;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2757,297,0 chrXV 875004 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8656;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.18;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2298,243,0 chrXV 875332 . A T 2776 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.39;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2809,294,0 chrXV 875566 . C A 2508 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.89;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2541,261,0 chrXV 875572 . A C 2513 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.44;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2546,273,0 chrXV 875585 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.32;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2598,264,0 chrXV 875652 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.31;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2621,279,0 chrXV 875886 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2216,234,0 chrXV 876178 . G C 2143 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.9866;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.92;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2176,225,0 chrXV 876460 . A G 1942 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1975,216,0 chrXV 876653 . C A 2540 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.30;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2573,264,0 chrXV 876891 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.81;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3152,339,0 chrXV 877263 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.92;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2749,285,0 chrXV 877730 . A C 4665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=189;Dels=0.00;FS=11.834;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.403;QD=24.68;ReadPosRankSum=2.941;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4665,487,0 chrXV 877812 . C T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=26.16;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4735,481,0 chrXV 877890 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=7.429;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.506;QD=21.05;ReadPosRankSum=2.415;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4441,480,0 chrXV 877935 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=207;Dels=0.00;FS=6.032;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;MQRankSum=-0.368;QD=16.72;ReadPosRankSum=2.966;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:3461,366,0 chrXV 877937 . C G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=17.11;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3542,369,0 chrXV 877950 . A G 2627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-0.219;QD=14.20;ReadPosRankSum=2.370;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2660,288,0 chrXV 877951 . T G 2722 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=6.092;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-2.317;QD=14.71;ReadPosRankSum=2.423;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2755,285,0 chrXV 877953 . G A 2764 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=14.62;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:2797,291,0 chrXV 877970 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.8357;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=14.89;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3190,328,0 chrXV 878069 . G A 6169.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.9434;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.58;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6169,637,0 chrXV 878115 . C T 5053.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.0657;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=23.61;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5053,538,0 chrXV 878721 . A C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.7747;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.213;QD=19.85;ReadPosRankSum=1.698;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4069,430,0 chrXV 878999 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=23.54;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3649,376,0 chrXV 879013 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.140;QD=21.50;ReadPosRankSum=1.685;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3215,348,0 chrXV 879022 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=6.516;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.184;QD=21.68;ReadPosRankSum=2.386;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3339,351,0 chrXV 879067 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.53;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3357,343,0 chrXV 879097 . T G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=7.415;HaplotypeScore=7.0133;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.337;QD=23.43;ReadPosRankSum=2.419;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3749,408,0 chrXV 879127 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=2.915;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.774;QD=22.84;ReadPosRankSum=2.402;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3540,378,0 chrXV 879175 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=137;Dels=0.00;FS=6.046;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.519;QD=18.60;ReadPosRankSum=2.919;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2581,276,0 chrXV 879184 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4984;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2537,267,0 chrXV 879343 . T A 3188 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.79;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3221,348,0 chrXV 879406 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.40;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3416,352,0 chrXV 879676 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.27;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4725,484,0 chrXV 880012 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.66;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4894,505,0 chrXV 880027 . G A 5009.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.30;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5009,514,0 chrXV 880543 . T C 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.214;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.047;QD=22.87;ReadPosRankSum=2.385;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2640,282,0 chrXV 880556 . A G 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.077;QD=22.13;ReadPosRankSum=1.701;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2512,261,0 chrXV 880789 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.96;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3018,318,0 chrXV 880865 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.13;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3013,327,0 chrXV 880976 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.49;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3654,376,0 chrXV 880986 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.22;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3586,367,0 chrXV 881033 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.71;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3488,378,0 chrXV 881147 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.48;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4113,424,0 chrXV 881292 . C T 4912.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.50;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4912,499,0 chrXV 881426 . C G 6140.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.0968;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.89;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6140,655,0 chrXV 881726 . C T 6251.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=19.1133;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.00;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6251,655,0 chrXV 881960 . T C 10968.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=496;Dels=0.00;FS=5.905;HaplotypeScore=29.7723;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.370;QD=22.11;ReadPosRankSum=2.974;SB=-5.933e+03 GT:AD:DP:GQ:PL 1/1:3,493:496:99:10968,1171,0 chrXV 882091 . A G 8972.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=398;Dels=0.00;FS=5.205;HaplotypeScore=26.6611;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.020;QD=22.54;ReadPosRankSum=3.344;SB=-4.069e+03 GT:AD:DP:GQ:PL 1/1:4,393:398:99:8972,949,0 chrXV 882125 . C T 9346.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=24.3284;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.96;SB=-4.157e+03 GT:AD:DP:GQ:PL 1/1:0,407:407:99:9346,976,0 chrXV 882294 . A G 5503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=268;Dels=0.00;FS=2.868;HaplotypeScore=17.1099;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.912;QD=20.53;ReadPosRankSum=2.366;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:3,264:268:99:5503,592,0 chrXV 882343 . A G 6160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=18.2885;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.106;QD=22.65;ReadPosRankSum=1.694;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:6160,652,0 chrXV 882532 . T C 2708 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.83;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2741,294,0 chrXV 882544 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.53;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2599,267,0 chrXV 882593 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.6162;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.06;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1596,171,0 chrXV 882644 . C T 279.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;DP=80;Dels=0.00;FS=36.385;HaplotypeScore=4.6663;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=-2.180;QD=3.49;ReadPosRankSum=-5.822;SB=2.117e-03 GT:AD:DP:GQ:PL 0/1:34,46:80:99:309,0,205 chrXV 882911 . G C 2897 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.63;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2930,306,0 chrXV 883135 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=238;Dels=0.00;FS=7.857;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.068;QD=22.47;ReadPosRankSum=2.376;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:2,232:238:99:5348,582,0 chrXV 883315 . T C 7000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=32.2332;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.675;QD=24.22;ReadPosRankSum=1.605;SB=-3.721e+03 GT:AD:DP:GQ:PL 1/1:3,284:289:99:7000,739,0 chrXV 883966 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3228,331,0 chrXV 884566 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.996;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.586;QD=25.08;ReadPosRankSum=1.706;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3335,343,0 chrXV 884596 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.366;QD=22.07;ReadPosRankSum=1.659;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3167,327,0 chrXV 884606 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.66;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3065,310,0 chrXV 884667 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=142;Dels=0.00;FS=5.827;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.407;QD=22.16;ReadPosRankSum=2.779;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3180,336,0 chrXV 884876 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=5.4260;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.02;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2796,285,0 chrXV 884877 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=5.4260;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.60;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2757,288,0 chrXV 885209 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3495,361,0 chrXV 885275 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=2.965;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.519;QD=24.65;ReadPosRankSum=2.418;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3821,402,0 chrXV 885329 . T C 3160 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3193,351,0 chrXV 885669 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=5.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.880;QD=24.52;ReadPosRankSum=1.705;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3123,330,0 chrXV 885692 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=4.502;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.307;QD=22.38;ReadPosRankSum=1.683;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3189,342,0 chrXV 885908 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.83;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3456,361,0 chrXV 885962 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=3.091;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.866;QD=22.06;ReadPosRankSum=1.668;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2460,261,0 chrXV 886037 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=6.515;HaplotypeScore=4.9991;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.095;QD=19.16;ReadPosRankSum=2.366;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2294,240,0 chrXV 886052 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.177;QD=19.21;ReadPosRankSum=1.705;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2492,264,0 chrXV 886097 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.620;QD=20.72;ReadPosRankSum=1.680;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2810,294,0 chrXV 886907 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4233,453,0 chrXV 887066 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=3.754;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-1.168;QD=24.47;ReadPosRankSum=1.693;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4355,448,0 chrXV 887399 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.23;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2367,246,0 chrXV 887657 . C A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.23;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4213,459,0 chrXV 888126 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2283,240,0 chrXV 888891 . C A 1497 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.26;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1530,162,0 chrXV 889336 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=2.050;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.774;QD=23.46;ReadPosRankSum=2.057;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3917,387,0 chrXV 889741 . G A 269 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=8.41;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:33:302,33,0 chrXV 889988 . A T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=27.31;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3386,349,0 chrXV 890036 . C G 4727.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.1571;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.01;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4727,502,0 chrXV 890409 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.464;QD=23.23;ReadPosRankSum=1.709;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3554,378,0 chrXV 890957 . G A 4711.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.79;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4711,481,0 chrXV 891265 . T G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=3.094;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.534;QD=21.14;ReadPosRankSum=1.600;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3362,357,0 chrXV 891275 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.24;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3129,324,0 chrXV 891444 . T C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.748;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.189;QD=24.16;ReadPosRankSum=1.705;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3126,330,0 chrXV 891508 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=3.021;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.592;QD=19.80;ReadPosRankSum=2.382;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2231,234,0 chrXV 891617 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=26.53;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2580,264,0 chrXV 891758 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.98;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:3081,324,0 chrXV 891827 . G C 2301 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.48;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2334,249,0 chrXV 892177 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.5283;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.111;QD=24.35;ReadPosRankSum=1.710;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3798,402,0 chrXV 892334 . T G 3706.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.87;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3706,393,0 chrXV 892603 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.70;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1627,171,0 chrXV 892736 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.55;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2511,258,0 chrXV 892829 . A C 2671 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.06;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2704,285,0 chrXV 892863 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.85;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3877,420,0 chrXV 893238 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3213,348,0 chrXV 893595 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.05;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3273,337,0 chrXV 893597 . T G 3116 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.79;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3149,333,0 chrXV 893796 . T A 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.458;QD=25.45;ReadPosRankSum=1.682;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3537,364,0 chrXV 894517 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.59;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2234,240,0 chrXV 894566 . T G 2338 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.48;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2371,255,0 chrXV 895062 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.20;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4743,484,0 chrXV 895152 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.018;QD=22.16;ReadPosRankSum=1.677;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4166,442,0 chrXV 895158 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.93;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4232,450,0 chrXV 895667 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.45;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2502,273,0 chrXV 895706 . T G 2291 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.46;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2324,249,0 chrXV 896036 . A C 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.638;QD=21.56;ReadPosRankSum=1.699;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4507,483,0 chrXV 896038 . G T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.91;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4557,475,0 chrXV 896048 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.98;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4322,442,0 chrXV 896084 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.256;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.085;QD=19.68;ReadPosRankSum=1.713;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3582,381,0 chrXV 896361 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.815;QD=21.63;ReadPosRankSum=1.681;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2975,318,0 chrXV 896376 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.35;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2516,273,0 chrXV 896873 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651;DP=116;Dels=0.00;FS=6.144;HaplotypeScore=3.5619;MLEAC=1;MLEAF=0.500;MQ=47.37;MQ0=0;MQRankSum=-5.313;QD=0.16;ReadPosRankSum=-6.028;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:90,26:116:49:49,0,1820 chrXV 896879 . C T 2293 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=5.8071;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=-1.386;QD=18.95;ReadPosRankSum=1.241;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2326,240,0 chrXV 896882 . T C 2098 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=7.5623;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-0.575;QD=17.06;ReadPosRankSum=2.067;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2131,213,0 chrXV 896888 . C T 2273 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=18.18;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2306,240,0 chrXV 896924 . G T 2747 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6248;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.82;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2780,291,0 chrXV 897596 . A G 5269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=231;Dels=0.00;FS=6.069;HaplotypeScore=17.1007;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.306;QD=22.81;ReadPosRankSum=2.926;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:5269,559,0 chrXV 898703 . A C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.89;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3260,351,0 chrXV 898841 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.66;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3214,339,0 chrXV 898990 . C A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.79;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3765,391,0 chrXV 899008 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.071;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.553;QD=23.31;ReadPosRankSum=1.684;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3357,357,0 chrXV 899059 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=141;Dels=0.00;FS=8.653;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.478;QD=22.86;ReadPosRankSum=3.359;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:3256,342,0 chrXV 899349 . C A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4484,460,0 chrXV 899583 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3050,310,0 chrXV 899806 . T A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.6855;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.09;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4341,454,0 chrXV 900929 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.831;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.801;QD=23.89;ReadPosRankSum=2.403;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2565,273,0 chrXV 900947 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.57;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2720,291,0 chrXV 901125 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=6.793;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.625;QD=21.87;ReadPosRankSum=2.370;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2767,297,0 chrXV 901517 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.65;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3137,319,0 chrXV 901570 . A C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.170;QD=22.69;ReadPosRankSum=1.704;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2824,297,0 chrXV 901621 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.6662;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=21.41;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2388,264,0 chrXV 902182 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.6479;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.58;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3416,360,0 chrXV 902767 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.52;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2379,258,0 chrXV 902817 . A T 2356 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2389,255,0 chrXV 902953 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.94;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2752,288,0 chrXV 903002 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=7.901;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.031;QD=24.28;ReadPosRankSum=2.361;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2728,285,0 chrXV 903164 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.920;QD=21.89;ReadPosRankSum=1.705;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2835,294,0 chrXV 903193 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.24;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2858,291,0 chrXV 903220 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=123;Dels=0.00;FS=8.460;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.539;QD=20.37;ReadPosRankSum=2.348;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2538,267,0 chrXV 903319 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.26;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3373,357,0 chrXV 903503 . A T 3072 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.10;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3105,327,0 chrXV 903530 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.076;QD=23.42;ReadPosRankSum=1.680;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3125,333,0 chrXV 903669 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=1;QD=19.85;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2574,270,0 chrXV 903843 . T G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.463;QD=21.31;ReadPosRankSum=1.706;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2867,312,0 chrXV 903846 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=20.54;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2847,291,0 chrXV 903919 . G T 2507 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.25;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2540,261,0 chrXV 904192 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2666,276,0 chrXV 904342 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.2651;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.335;QD=21.83;ReadPosRankSum=1.674;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2653,285,0 chrXV 904817 . A G 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=5.535;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.764;QD=25.52;ReadPosRankSum=1.620;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2432,258,0 chrXV 904872 . G C 1938 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.63;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1971,207,0 chrXV 904900 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.60;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2157,228,0 chrXV 905332 . A T 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=164;Dels=0.00;FS=6.945;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.427;QD=21.32;ReadPosRankSum=2.420;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3496,369,0 chrXV 905341 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.02;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3468,369,0 chrXV 905380 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=175;Dels=0.00;FS=6.097;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.273;QD=18.32;ReadPosRankSum=2.936;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3239,348,0 chrXV 905482 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.67;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4071,421,0 chrXV 905729 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.032;QD=21.15;ReadPosRankSum=2.904;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2021,213,0 chrXV 905751 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.02;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1755,180,0 chrXV 905801 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.2564;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.12;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1505,153,0 chrXV 905895 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=5.9025;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1198,123,0 chrXV 907000 . T C 7599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=305;Dels=0.00;FS=2.565;HaplotypeScore=13.8034;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.470;QD=24.91;ReadPosRankSum=1.602;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:3,302:305:99:7599,791,0 chrXV 907705 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=100;Dels=0.00;FS=3.047;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.268;QD=22.51;ReadPosRankSum=2.401;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2284,240,0 chrXV 908634 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=12.7736;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=26.61;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4737,493,0 chrXV 908801 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.7273;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.51;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4984,508,0 chrXV 908860 . T A 6102.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.70;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6102,619,0 chrXV 910022 . G A 6060.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.9953;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=26.01;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:6060,616,0 chrXV 910072 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=222;Dels=0.00;FS=2.890;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.072;QD=22.44;ReadPosRankSum=2.394;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4982,520,0 chrXV 910083 . T C 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=216;Dels=0.00;FS=2.923;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.688;QD=21.85;ReadPosRankSum=2.415;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4720,505,0 chrXV 910701 . T G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=175;Dels=0.00;FS=5.420;HaplotypeScore=14.1967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.546;QD=24.81;ReadPosRankSum=2.857;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4341,462,0 chrXV 911862 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.71;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2651,267,0 chrXV 911894 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.594;QD=23.06;ReadPosRankSum=2.407;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2662,276,0 chrXV 911906 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.518;QD=20.99;ReadPosRankSum=2.409;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2573,270,0 chrXV 912636 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2984,309,0 chrXV 912729 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3407,357,0 chrXV 913133 . T A 2599 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.63;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2632,279,0 chrXV 913164 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.34;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2764,303,0 chrXV 914651 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.536;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.770;QD=25.06;ReadPosRankSum=1.711;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4085,438,0 chrXV 914912 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.87;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3138,330,0 chrXV 915217 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.378;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.822;QD=24.25;ReadPosRankSum=1.707;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3347,348,0 chrXV 915406 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=124;Dels=0.00;FS=2.894;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.350;QD=21.22;ReadPosRankSum=1.950;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2664,288,0 chrXV 915416 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=3.893;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.042;QD=21.79;ReadPosRankSum=1.621;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2778,297,0 chrXV 915553 . A C 2944 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.65;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2977,312,0 chrXV 915558 . C T 2774 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=140;Dels=0.00;FS=5.466;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=1.756;QD=19.81;ReadPosRankSum=2.691;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2807,300,0 chrXV 915560 . T C 2702 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.02;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.90;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2735,300,0 chrXV 915687 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.60;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3763,396,0 chrXV 915759 . G A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=26.05;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4532,481,0 chrXV 915949 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.63;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4015,409,0 chrXV 915979 . G T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.88;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3892,403,0 chrXV 916053 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.38;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3953,414,0 chrXV 916056 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.62;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3939,417,0 chrXV 916094 . C G 3706.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.61;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:3706,393,0 chrXV 916139 . A T 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=4.393;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.840;QD=24.51;ReadPosRankSum=1.697;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4852,502,0 chrXV 916489 . T C 4926.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.80;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4926,523,0 chrXV 916584 . G T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.3669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4922,505,0 chrXV 916728 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.8174;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.11;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4946,514,0 chrXV 916839 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.6373;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.99;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5301,567,0 chrXV 916890 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.88;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4760,505,0 chrXV 917052 . T A 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=159;Dels=0.00;FS=2.976;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.734;QD=22.37;ReadPosRankSum=2.372;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3557,378,0 chrXV 917139 . A G 5334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.127;QD=24.47;ReadPosRankSum=1.716;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5334,565,0 chrXV 918228 . T A 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.051;QD=27.50;ReadPosRankSum=1.712;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4702,478,0 chrXV 918419 . T A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2709;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.54;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3583,361,0 chrXV 919242 . T C 5007.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.9986;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.86;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5007,535,0 chrXV 919614 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=177;Dels=0.00;FS=6.096;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.540;QD=21.44;ReadPosRankSum=2.422;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3794,414,0 chrXV 919746 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.20;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4374,454,0 chrXV 919749 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=200;Dels=0.00;FS=8.058;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-2.141;QD=20.42;ReadPosRankSum=2.413;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4084,444,0 chrXV 919818 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.836;HaplotypeScore=9.6106;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.287;QD=20.39;ReadPosRankSum=1.693;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3691,388,0 chrXV 920281 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3981,415,0 chrXV 920766 . T A 5202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=214;Dels=0.00;FS=4.219;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.453;QD=24.31;ReadPosRankSum=1.667;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5202,532,0 chrXV 920814 . A C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4100,441,0 chrXV 920857 . G A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.17;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4808,490,0 chrXV 921242 . C A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3717,382,0 chrXV 921405 . A G 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.165;QD=21.69;ReadPosRankSum=1.638;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2419,258,0 chrXV 921940 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3067,312,0 chrXV 921982 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2980,315,0 chrXV 922090 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3580,367,0 chrXV 922453 . A C 5495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=247;Dels=0.00;FS=2.813;HaplotypeScore=20.3125;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.025;QD=22.25;ReadPosRankSum=2.429;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:5495,600,0 chrXV 922567 . A G 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.2338;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.915;QD=24.32;ReadPosRankSum=1.643;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4766,505,0 chrXV 922757 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.34;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3529,366,0 chrXV 922935 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.57;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1699,180,0 chrXV 922957 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.07;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1417,147,0 chrXV 923202 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1074,120,0 chrXV 923451 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.27;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3519,361,0 chrXV 923567 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.253;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.309;QD=23.42;ReadPosRankSum=1.652;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3077,324,0 chrXV 923616 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.48;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2992,306,0 chrXV 923827 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3462,372,0 chrXV 923925 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=203;Dels=0.00;FS=6.712;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.978;QD=22.81;ReadPosRankSum=2.425;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4631,498,0 chrXV 923937 . T A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.4217;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.07;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4525,463,0 chrXV 924831 . T C 6468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=267;Dels=0.00;FS=3.437;HaplotypeScore=13.3881;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.239;QD=24.22;ReadPosRankSum=1.706;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:6468,676,0 chrXV 925008 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3218;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.34;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3064,321,0 chrXV 925188 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.10;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2366,258,0 chrXV 925525 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.04;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2870,294,0 chrXV 925933 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=206;Dels=0.00;FS=3.602;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.764;QD=23.82;ReadPosRankSum=1.681;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4906,534,0 chrXV 926126 . C T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.05;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5123,520,0 chrXV 926224 . T C 5347.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.21;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5347,585,0 chrXV 926881 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3499,358,0 chrXV 926925 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2773,285,0 chrXV 928129 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3530,364,0 chrXV 928579 . T C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=4.410;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.177;QD=24.30;ReadPosRankSum=1.705;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3144,330,0 chrXV 929121 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.22;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4336,451,0 chrXV 929593 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.24;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3031,327,0 chrXV 930118 . A G 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.010;DP=180;Dels=0.00;FS=3.390;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.997;QD=23.67;ReadPosRankSum=-0.648;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4261,434,0 chrXV 932327 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.74;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3194,330,0 chrXV 934516 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.5092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4485,460,0 chrXV 935504 . C T 5407.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.8175;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.47;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5407,553,0 chrXV 935795 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.58;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3638,379,0 chrXV 937046 . A G 6632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=297;Dels=0.00;FS=2.929;HaplotypeScore=22.0660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.510;QD=22.33;ReadPosRankSum=2.416;SB=-3.446e+03 GT:AD:DP:GQ:PL 1/1:2,294:297:99:6632,703,0 chrXV 937658 . C G 5749.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.1759;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.10;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5749,601,0 chrXV 940092 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.25;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4115,438,0 chrXV 941271 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3165,327,0 chrXV 941405 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.1260;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.22;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3669,384,0 chrXV 941514 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0338;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.02;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2680,273,0 chrXV 942317 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3625,387,0 chrXV 942594 . T C 5033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.049;DP=214;Dels=0.00;FS=7.194;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.244;QD=23.52;ReadPosRankSum=4.150;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:6,208:214:99:5033,535,0 chrXV 942759 . T C 6849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=14.6566;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.416;QD=23.86;ReadPosRankSum=1.708;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:1,284:287:99:6849,742,0 chrXV 944430 . T C 2029 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1313;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.29;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2062,219,0 chrXV 945621 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.68;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2659,273,0 chrXV 945624 . T C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.816;QD=19.78;ReadPosRankSum=1.646;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2466,264,0 chrXV 945647 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=19.21;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2185,228,0 chrXV 945663 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.358;QD=18.46;ReadPosRankSum=1.703;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2267,243,0 chrXV 945784 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.36;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2981,301,0 chrXV 946466 . A G 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.667;QD=18.17;ReadPosRankSum=1.681;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:4905,508,0 chrXV 946490 . A C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.257;QD=18.06;ReadPosRankSum=2.410;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:4534,484,0 chrXV 946686 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8537;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.94;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3424,349,0 chrXV 948120 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.5282;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.63;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5369,585,0 chrXV 950909 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.42;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3483,358,0 chrXV 952140 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=25.91;ReadPosRankSum=-0.818;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3291,317,0 chrXV 952737 . A G 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=116;Dels=0.00;FS=6.940;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.573;QD=24.85;ReadPosRankSum=2.407;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2916,300,0 chrXV 956308 . G T 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.9043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=25.01;ReadPosRankSum=1.714;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4776,496,0 chrXV 956880 . G C 2386 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2419,258,0 chrXV 958080 . T A 2420 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.47;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2453,252,0 chrXV 959231 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=24.57;ReadPosRankSum=1.707;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3440,360,0 chrXV 959820 . G A 4957.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4957,505,0 chrXV 960232 . A C 2283 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2316,252,0 chrXV 960428 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.29;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2292,243,0 chrXV 960845 . G C 1450 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1483,153,0 chrXV 961510 . C T 5256.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.4083;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.91;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5256,538,0 chrXV 961682 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.54;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3436,357,0 chrXV 963635 . G C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6159;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.69;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4162,430,0 chrXV 964403 . C A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.9923;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.39;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3860,400,0 chrXV 966067 . C A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.66;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3284,334,0 chrXV 966325 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3545,369,0 chrXV 968186 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.28;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3890,403,0 chrXV 968286 . T A 3109 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2361;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.86;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3142,330,0 chrXV 968332 . T G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.58;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3632,396,0 chrXV 968360 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.64;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3877,408,0 chrXV 968440 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=190;Dels=0.00;FS=13.550;HaplotypeScore=21.3121;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=2.457;QD=24.32;ReadPosRankSum=3.376;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:4,184:190:99:4621,481,0 chrXV 968617 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.8410;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.13;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4197,450,0 chrXV 968647 . T C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.297;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.479;QD=23.69;ReadPosRankSum=1.714;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4453,480,0 chrXV 968773 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7936;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.38;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2943,306,0 chrXV 968822 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=24.81;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3697,385,0 chrXV 968865 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=26.25;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3649,376,0 chrXV 968882 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=26.49;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3682,379,0 chrXV 968942 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1689;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=25.47;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3336,357,0 chrXV 968970 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=24.90;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3386,351,0 chrXV 968991 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=24.86;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3505,366,0 chrXV 969023 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=3.022;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=0.258;QD=22.71;ReadPosRankSum=2.284;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2736,294,0 chrXV 969046 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.87;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2159,228,0 chrXV 969067 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.82;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1953,207,0 chrXV 969164 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-0.997;QD=19.71;ReadPosRankSum=1.662;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1984,216,0 chrXV 969177 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=20.77;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1757,186,0 chrXV 969193 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=17.55;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1209,129,0 chrXV 969198 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=17.28;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1087,114,0 chrXV 969237 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.71;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1162,120,0 chrXV 969272 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.18;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1679,177,0 chrXV 970097 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=22.60;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2519,279,0 chrXV 970105 . A T 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=101;Dels=0.00;FS=5.268;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;MQRankSum=-3.073;QD=22.50;ReadPosRankSum=3.352;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2306,240,0 chrXV 970110 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=22.02;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1993,213,0 chrXV 970129 . C A 1847 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=20.30;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1880,201,0 chrXV 970141 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.43;MQ0=0;QD=20.43;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1892,201,0 chrXV 970171 . C G 1536 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=19.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1569,165,0 chrXV 970172 . C T 1481 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=18.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1514,165,0 chrXV 970181 . C T 1492 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=18.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1525,159,0 chrXV 970186 . G A 1495 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=17.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1528,159,0 chrXV 970210 . A G 133.13 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=2.02;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,66:66:18:166,18,0 chrXV 970213 . A G 947 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=14.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:980,102,0 chrXV 970228 . T A 1011 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;MQRankSum=0.176;QD=14.65;ReadPosRankSum=-0.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1044,111,0 chrXV 970235 . T C 979 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=14.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1012,111,0 chrXV 970266 . A G 714 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;MQRankSum=0.693;QD=14.28;ReadPosRankSum=1.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:81:747,81,0 chrXV 973659 . G C 624.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=19.62;MQ0=77;MQRankSum=-0.787;QD=2.84;ReadPosRankSum=-1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,73:220:99:654,0,1106 chrXV 973677 . C T 2026 filter AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.2586;MLEAC=2;MLEAF=1.00;MQ=19.28;MQ0=75;QD=9.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:72,149:221:99:2059,210,0 chrXV 973694 . C T 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.232;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=75;MQRankSum=-0.788;QD=1.81;ReadPosRankSum=0.745;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,78:248:99:478,0,1045 chrXV 973728 . C A 382.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.262;DP=259;Dels=0.00;FS=5.161;HaplotypeScore=15.6665;MLEAC=1;MLEAF=0.500;MQ=16.97;MQ0=65;MQRankSum=1.485;QD=1.47;ReadPosRankSum=0.036;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:146,108:259:99:412,0,446 chrXV 973794 . C T 2137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;DP=318;Dels=0.00;FS=3.307;HaplotypeScore=16.1424;MLEAC=1;MLEAF=0.500;MQ=29.91;MQ0=14;MQRankSum=0.604;QD=6.72;ReadPosRankSum=-0.471;SB=-8.550e+02 GT:AD:DP:GQ:PL 0/1:157,161:318:99:2167,0,2175 chrXV 974076 . C T 847 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=20.49;MQ0=12;QD=6.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,140:141:90:880,90,0 chrXV 974082 . C T 270.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=14;MQRankSum=0.896;QD=2.01;ReadPosRankSum=-0.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,67:134:99:300,0,240 chrXV 974083 . A G 254.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=14;MQRankSum=0.159;QD=1.87;ReadPosRankSum=0.877;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,65:136:99:284,0,249 chrXV 974088 . C T 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.542;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=1;MLEAF=0.500;MQ=18.35;MQ0=14;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,63:134:99:231,0,193 chrXV 976376 . T C 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=-1.208;QD=1.54;ReadPosRankSum=-0.893;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:9:83,9,0 chrXV 980197 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=23.93;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2211,225,0 chrXV 980242 . A T 1852 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=21.79;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1885,192,0 chrXV 980465 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.502;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=9.75;MQ0=15;MQRankSum=-1.324;QD=0.37;ReadPosRankSum=2.510;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:10,28:38:6:45,6,0 chrXV 980582 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=47;Dels=0.00;FS=76.843;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=2;MQRankSum=4.764;QD=0.36;ReadPosRankSum=-4.791;SB=-5.477e+01 GT:AD:DP:GQ:PL 1/1:12,35:47:6:48,6,0 chrXV 980586 . C T 83.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;DP=51;Dels=0.00;FS=60.112;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;MQRankSum=4.825;QD=1.64;ReadPosRankSum=-0.806;SB=-1.755e+02 GT:AD:DP:GQ:PL 1/1:12,39:51:12:116,12,0 chrXV 980701 . A T 2365 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=25.16;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2398,255,0 chrXV 981009 . T C 2344 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.92;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2377,252,0 chrXV 981291 . T G 2473 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.73;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2506,267,0 chrXV 982131 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.36;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2489,270,0 chrXV 982135 . A T 2466 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.82;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2499,267,0 chrXV 982145 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.31;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2441,261,0 chrXV 983798 . A C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.18;ReadPosRankSum=1.710;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3821,405,0 chrXV 984300 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.44;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2806,294,0 chrXV 984859 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=19.77;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1615,171,0 chrXV 984992 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.38;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3313,339,0 chrXV 987547 . A G 5511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.792;DP=252;Dels=0.00;FS=7.967;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.869;QD=21.87;ReadPosRankSum=3.767;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:5,244:252:99:5511,597,0 chrXV 987667 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DP=218;Dels=0.00;FS=4.424;HaplotypeScore=9.7314;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.144;QD=20.34;ReadPosRankSum=1.604;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4435,454,0 chrXV 987922 . G C 4613.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.21;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4613,475,0 chrXV 987985 . C A 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.155;QD=24.53;ReadPosRankSum=1.088;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3851,400,0 chrXV 988096 . G A 5031.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.97;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,220:229:99:5031,543,0 chrXV 988183 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6564;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.25;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4206,430,0 chrXV 988575 . A T 7049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=14.2381;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.159;QD=23.81;ReadPosRankSum=1.697;SB=-3.753e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:7049,727,0 chrXV 989300 . C T 4945.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=26.3662;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.68;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4945,517,0 chrXV 991809 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2323;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.85;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4135,421,0 chrXV 992008 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=3.638;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.145;QD=24.60;ReadPosRankSum=1.712;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4206,444,0 chrXV 992356 . C G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.67;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3696,387,0 chrXV 992802 . C A 2829 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5020;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.18;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2862,294,0 chrXV 993116 . C G 2798 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2831,297,0 chrXV 993617 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3316,337,0 chrXV 993703 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3545,378,0 chrXV 994342 . T C 2600 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.24;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2633,279,0 chrXV 994833 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=4.620;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-1.334;QD=22.55;ReadPosRankSum=1.701;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2581,276,0 chrXV 995180 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.11;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3021,327,0 chrXV 995834 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.90;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3389,354,0 chrXV 996026 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.685;QD=23.91;ReadPosRankSum=1.652;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3117,327,0 chrXV 996702 . A T 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-1.358;QD=23.97;ReadPosRankSum=1.670;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2694,276,0 chrXV 997483 . C G 4465.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4465,469,0 chrXV 997902 . G C 2125 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2158,234,0 chrXV 998245 . C A 1513 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=21.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1546,159,0 chrXV 998921 . G A 5844.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.15;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5844,619,0 chrXV 999385 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=3.358;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.282;QD=23.74;ReadPosRankSum=1.715;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4962,517,0 chrXV 999455 . G C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.95;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3451,375,0 chrXV 999645 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2947,300,0 chrXV 999686 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.21;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2957,309,0 chrXV 1000192 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.64;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4362,451,0 chrXV 1002323 . C G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3517,369,0 chrXV 1002519 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.11;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3119,318,0 chrXV 1003372 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.764;QD=24.62;ReadPosRankSum=1.707;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3348,357,0 chrXV 1004868 . A T 1493 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1526,156,0 chrXV 1007685 . G C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3941,426,0 chrXV 1008479 . T C 6316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=258;Dels=0.00;FS=6.972;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.302;QD=24.48;ReadPosRankSum=2.382;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:6316,655,0 chrXV 1008507 . C A 5886.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.90;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5886,613,0 chrXV 1008599 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.86;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4009,418,0 chrXV 1012739 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.56;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1838,201,0 chrXV 1018776 . A G 5241.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.20;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5241,550,0 chrXV 1018908 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=189;Dels=0.00;FS=6.091;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.348;QD=21.70;ReadPosRankSum=2.423;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4101,438,0 chrXV 1022262 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.80;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3770,382,0 chrXV 1023392 . T G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.53;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3600,378,0 chrXV 1023427 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=147;Dels=0.00;FS=9.211;HaplotypeScore=17.3589;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.851;QD=22.86;ReadPosRankSum=3.352;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3360,351,0 chrXV 1024047 . G T 2948 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2981,318,0 chrXV 1026427 . A C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.814;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.976;QD=24.96;ReadPosRankSum=1.708;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3545,375,0 chrXV 1027094 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3831,408,0 chrXV 1028039 . A T 1094 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1127,114,0 chrXV 1029127 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.40;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2083,222,0 chrXV 1029944 . A G 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=220;Dels=0.00;FS=3.700;HaplotypeScore=14.3987;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.365;QD=23.69;ReadPosRankSum=1.716;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5212,570,0 chrXV 1030315 . C A 2835 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.44;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2868,294,0 chrXV 1031126 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=25.23;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2531,273,0 chrXV 1031150 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.82;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2465,264,0 chrXV 1031500 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=26.51;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2976,304,0 chrXV 1031632 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.86;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3937,403,0 chrXV 1031656 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.86;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3595,381,0 chrXV 1031662 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.29;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3421,352,0 chrXV 1031715 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.91;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4223,439,0 chrXV 1032017 . T C 5387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=235;Dels=0.00;FS=3.503;HaplotypeScore=16.7863;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.676;QD=22.92;ReadPosRankSum=1.702;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5387,588,0 chrXV 1032089 . T C 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=6.909;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.312;QD=24.13;ReadPosRankSum=2.425;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4850,514,0 chrXV 1032162 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=172;Dels=0.00;FS=4.523;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.469;QD=23.94;ReadPosRankSum=1.712;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4118,433,0 chrXV 1032536 . C A 5541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4485;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.668;QD=25.30;ReadPosRankSum=1.395;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5541,568,0 chrXV 1032583 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0771;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.51;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5178,526,0 chrXV 1032788 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.65;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4348,462,0 chrXV 1032872 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.63;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3805,400,0 chrXV 1032893 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.30;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3309,342,0 chrXV 1032998 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3914,409,0 chrXV 1033361 . A T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.94;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3341,345,0 chrXV 1033439 . T G 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.703;QD=21.01;ReadPosRankSum=0.675;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2512,273,0 chrXV 1033446 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.39;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2899,297,0 chrXV 1035608 . G A 5016.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.4788;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.68;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5016,520,0 chrXV 1037514 . A C 467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=9.4873;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=0.000;QD=17.30;ReadPosRankSum=1.600;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:54:500,54,0 chrXV 1037516 . A G 385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.376;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.213;QD=15.40;ReadPosRankSum=0.794;SB=-2.488e+01 GT:AD:DP:GQ:PL 1/1:3,22:25:45:418,45,0 chrXV 1039474 . T C 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=3.096;HaplotypeScore=13.1131;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.087;QD=23.29;ReadPosRankSum=1.681;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4821,505,0 chrXV 1039586 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.470;QD=22.77;ReadPosRankSum=1.689;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3688,405,0 chrXV 1039714 . T A 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=114;Dels=0.01;FS=3.551;HaplotypeScore=84.2546;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.827;QD=17.88;ReadPosRankSum=1.545;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2071,213,0 chrXV 1039786 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.41;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3465,369,0 chrXV 1043118 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=4.867;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.753;QD=23.40;ReadPosRankSum=1.694;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2186,231,0 chrXV 1044933 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.80;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3151,324,0 chrXV 1045164 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.55;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3368,357,0 chrXV 1049615 . G A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=18.2384;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.73;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4971,505,0 chrXV 1049703 . G C 5036.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.31;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5036,529,0 chrXV 1050419 . T C 4544.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4544,489,0 chrXV 1050499 . C T 4715.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.46;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4715,499,0 chrXV 1053855 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.33;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2034,216,0 chrXV 1054633 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.97;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2830,288,0 chrXV 1055772 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=2.957;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.713;QD=24.23;ReadPosRankSum=2.395;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4361,463,0 chrXV 1056008 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.03;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3630,373,0 chrXV 1057321 . C T 4601.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4601,478,0 chrXV 1058174 . A G 2371 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2404,249,0 chrXV 1060135 . C T 789 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:87:822,87,0 chrXV 1060932 . C G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3888;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.08;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4021,424,0 chrXV 1061986 . C A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.55;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3437,357,0 chrXV 1062226 . G A 5603.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.47;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5603,571,0 chrXV 1062538 . A G 5430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=239;Dels=0.00;FS=3.027;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.642;QD=22.72;ReadPosRankSum=2.357;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5430,582,0 chrXV 1062547 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.78;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5194,561,0 chrXV 1062757 . T C 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=8.609;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.504;QD=23.91;ReadPosRankSum=2.392;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:5069,552,0 chrXV 1062786 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.07;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3972,432,0 chrXV 1062865 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.39;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3860,408,0 chrXV 1063177 . C T 4918.01 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.25;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4918,505,0 chrXV 1063183 . G A 4616.01 SnpCluster AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.16;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4616,475,0 chrXV 1063186 . G A 4445.01 SnpCluster AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.60;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4445,454,0 chrXV 1063375 . A G 7217.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=25.06;SB=-3.850e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:7217,757,0 chrXV 1063605 . G C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.49;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3718,390,0 chrXV 1063841 . A G 2104 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.700;QD=20.23;ReadPosRankSum=1.699;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2137,228,0 chrXV 1063846 . T C 2148 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=107;Dels=0.00;FS=10.075;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=-1.645;QD=20.07;ReadPosRankSum=2.895;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:3,102:107:99:2181,231,0 chrXV 1063847 . G A 2218 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.92;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2251,231,0 chrXV 1065729 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.05;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3808,388,0 chrXV 1065815 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.8747;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3480,363,0 chrXV 1067520 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.03;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2962,315,0 chrXV 1068041 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.53;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3529,367,0 chrXV 1068851 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2251,240,0 chrXV 1069905 . T A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.5502;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.57;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3906,403,0 chrXV 1071370 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-0.026;QD=22.52;ReadPosRankSum=1.706;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3006,321,0 chrXV 1071523 . A G 1393 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;MQRankSum=-2.410;QD=22.47;ReadPosRankSum=2.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1426,153,0 chrXV 1071752 . G A 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.975;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=46;MQRankSum=-0.711;QD=1.34;ReadPosRankSum=1.201;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,57:212:99:314,0,1384 chrXV 1074107 . C G 36.97 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=35.4009;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=1.16;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:9:69,9,0 chrXV 1074123 . A G 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=21.3527;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.359;QD=1.00;ReadPosRankSum=0.839;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:7,29:36:9:68,9,0 chrXV 1074124 . G A 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=21.3527;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.535;QD=1.00;ReadPosRankSum=1.485;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:4,32:36:9:68,9,0 chrXV 1074133 . T G 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=23.9856;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;QD=0.91;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,43:44:9:72,9,0 chrXV 1074136 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=27.4455;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=1;MQRankSum=0.057;QD=0.77;ReadPosRankSum=3.260;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:5,43:49:9:70,9,0 chrXV 1074138 . A G 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.402;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=35.2593;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=1;MQRankSum=-2.889;QD=0.66;ReadPosRankSum=5.109;SB=2.03 GT:AD:DP:GQ:PL 1/1:24,37:61:9:72,9,0 chrXV 1074170 . C T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.73;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:107,12,0 chrXV 1074173 . C T 85.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.28;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:118,12,0 chrXV 1074176 . T C 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.88;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:110,12,0 chrXV 1074186 . G A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.98;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:112,12,0 chrXV 1074187 . C T 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.98;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:112,12,0 chrXV 1074193 . T G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.25;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:109,12,0 chrXV 1074195 . T C 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.36;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:111,12,0 chrXV 1074196 . A C 75.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.385;QD=4.20;ReadPosRankSum=1.156;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:12:108,12,0 chrXV 1074198 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.14;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:107,12,0 chrXV 1074205 . C G 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.50;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:104,12,0 chrXV 1074209 . A G 70.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.05;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:103,12,0 chrXV 1074216 . A C 43.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.89;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,8:9:9:76,9,0 chrXV 1074266 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=2;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrXV 1074287 . A G 526 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=2;QD=18.79;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:559,69,0 chrXV 1074295 . A G 693 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=2;QD=18.24;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:726,87,0 chrXV 1074302 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=55;Dels=0.00;FS=23.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=2;MQRankSum=-2.003;QD=17.11;ReadPosRankSum=3.148;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:4,51:55:99:974,114,0 chrXV 1074311 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=17.7972;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=2;QD=19.78;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1912,219,0 chrXV 1074443 . A G 3046 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=152;Dels=0.00;FS=12.377;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=28;MQRankSum=-0.787;QD=20.04;ReadPosRankSum=1.646;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3079,330,0 chrXV 1074569 . G A 5221.01 filter AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=30;QD=18.19;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,283:287:99:5221,556,0 chrXV 1074659 . C G 1890.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.479;DP=141;Dels=0.00;FS=31.275;HaplotypeScore=15.9218;MLEAC=1;MLEAF=0.500;MQ=37.64;MQ0=14;MQRankSum=5.341;QD=13.40;ReadPosRankSum=6.863;SB=-6.680e+02 GT:AD:DP:GQ:PL 0/1:36,101:141:99:1920,0,236 chrXV 1074695 . A T 339.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DP=79;Dels=0.00;FS=18.502;HaplotypeScore=163.9273;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=2;MQRankSum=-0.608;QD=4.29;ReadPosRankSum=-5.901;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:62,17:79:56:369,0,56 chrXV 1074721 . A G 767 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=46;Dels=0.00;FS=2.684;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=5;MQRankSum=-0.151;QD=16.67;ReadPosRankSum=2.270;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:84:800,84,0 chrXV 1074725 . A G 807 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=5;QD=18.34;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:840,90,0 chrXV 1074763 . A G 1400 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.060;DP=85;Dels=0.00;FS=1.812;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=9;MQRankSum=0.642;QD=16.47;ReadPosRankSum=2.193;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:9,72:85:99:1433,107,0 chrXV 1074842 . G A 1868.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=171;Dels=0.00;FS=82.129;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=30.51;MQ0=30;MQRankSum=-1.491;QD=10.92;ReadPosRankSum=2.836;SB=-6.660e+02 GT:AD:DP:GQ:PL 0/1:70,99:171:99:1898,0,524 chrXV 1074854 . T C 1212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;DP=175;Dels=0.00;FS=110.987;HaplotypeScore=10.9208;MLEAC=1;MLEAF=0.500;MQ=29.91;MQ0=29;MQRankSum=-3.241;QD=6.93;ReadPosRankSum=0.957;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:87,84:175:99:1242,0,996 chrXV 1074857 . A G 694.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.839;DP=175;Dels=0.00;FS=99.095;HaplotypeScore=14.0209;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=27;MQRankSum=-3.641;QD=3.97;ReadPosRankSum=1.875;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:99,75:175:99:724,0,1235 chrXV 1074858 . G A 686.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.793;DP=171;Dels=0.00;FS=122.599;HaplotypeScore=12.6760;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=27;MQRankSum=-3.747;QD=4.01;ReadPosRankSum=1.277;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:96,75:171:99:716,0,1235 chrXV 1074890 . C A 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;DP=176;Dels=0.00;FS=284.193;HaplotypeScore=14.8755;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=19;MQRankSum=-1.848;QD=0.84;ReadPosRankSum=-3.531;SB=-3.003e+00 GT:AD:DP:GQ:PL 0/1:142,29:176:99:177,0,2701 chrXV 1074956 . C T 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.105;DP=175;Dels=0.00;FS=357.560;HaplotypeScore=4.2251;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=7;MQRankSum=-6.284;QD=0.31;ReadPosRankSum=0.104;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:135,40:175:85:85,0,3031 chrXV 1074980 . C A 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=159;Dels=0.00;FS=381.212;HaplotypeScore=4.9266;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=17;MQRankSum=-7.477;QD=1.65;ReadPosRankSum=1.821;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:106,52:159:99:293,0,2242 chrXV 1075223 . C T 3518.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3746;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=4;MQRankSum=1.426;QD=18.71;ReadPosRankSum=1.617;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:4,181:188:99:3518,366,0 chrXV 1075226 . C T 3305.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=190;Dels=0.00;FS=2.699;HaplotypeScore=3.5875;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=8;MQRankSum=1.595;QD=17.39;ReadPosRankSum=1.988;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:7,183:190:99:3305,351,0 chrXV 1075230 . C T 3284.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.320;DP=204;Dels=0.00;FS=21.246;HaplotypeScore=5.9536;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=12;MQRankSum=2.777;QD=16.10;ReadPosRankSum=4.431;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:20,184:204:99:3284,331,0 chrXV 1075245 . A G 3685.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=232;Dels=0.00;FS=3.632;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=19;MQRankSum=0.660;QD=15.88;ReadPosRankSum=1.716;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:3685,402,0 chrXV 1075489 . T G 1775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;DP=460;Dels=0.00;FS=10.646;HaplotypeScore=17.1091;MLEAC=1;MLEAF=0.500;MQ=35.48;MQ0=98;MQRankSum=-3.235;QD=3.86;ReadPosRankSum=0.004;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:313,144:460:99:1805,0,5021 chrXV 1075521 . A G 2507.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.503;DP=425;Dels=0.00;FS=51.625;HaplotypeScore=30.2121;MLEAC=1;MLEAF=0.500;MQ=33.52;MQ0=112;MQRankSum=-4.434;QD=5.90;ReadPosRankSum=-1.867;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:157,261:425:99:2537,0,2274 chrXV 1075581 . T C 6949.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.984;DP=482;Dels=0.00;FS=14.431;HaplotypeScore=14.5340;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=35;MQRankSum=0.171;QD=14.42;ReadPosRankSum=2.912;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:3,474:482:99:6949,733,0 chrXV 1075593 . C G 7699.01 filter AC=2;AF=1.00;AN=2;DP=499;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=20;QD=15.43;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,495:499:99:7699,808,0 chrXV 1075610 . T C 8803.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=496;Dels=0.00;FS=14.553;HaplotypeScore=21.9228;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=0.444;QD=17.75;ReadPosRankSum=2.954;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:3,493:496:99:8803,952,0 chrXV 1075718 . G T 1919 filter AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=19.2246;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=28;QD=9.36;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,203:205:99:1952,213,0 chrXV 1075738 . C T 903 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.21;MQ0=27;QD=6.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,139:140:93:936,93,0 chrXV 1075901 . A G 624 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=4;MQRankSum=-0.030;QD=13.87;ReadPosRankSum=2.330;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,43:45:72:657,72,0 chrXV 1076094 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.06;MQ0=32;QD=0.69;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,36:36:6:56,6,0 chrXV 1076337 . G A 436 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.61;MQ0=12;QD=15.03;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:51:469,51,0 chrXV 1076368 . A T 436 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.48;MQ0=11;QD=14.53;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:51:469,51,0 chrXV 1076426 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.94;MQ0=4;QD=3.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:6:57,6,0 chrXV 1076437 . A T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrXV 1076454 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrXV 1076602 . A C 103.26 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.15;MQ0=13;QD=5.16;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:136,15,0 chrXV 1077431 . T C 1666 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=205;Dels=0.00;FS=12.095;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=124;MQRankSum=-3.738;QD=8.13;ReadPosRankSum=3.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:1699,163,0 chrXV 1077713 . T C 1529.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.110;DP=400;Dels=0.00;FS=9.770;HaplotypeScore=33.1059;MLEAC=1;MLEAF=0.500;MQ=49.13;MQ0=1;MQRankSum=-0.056;QD=3.82;ReadPosRankSum=-0.213;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:290,108:400:99:1559,0,6473 chrXV 1078198 . T A 660.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DP=76;Dels=0.00;FS=20.998;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=12;MQRankSum=2.292;QD=8.68;ReadPosRankSum=0.455;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:23,53:76:99:690,0,179 chrXV 1078360 . A G 220.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=1;QD=14.67;SB=-8.196e+01 GT:AD:DP:GQ:PL 1/1:0,14:15:27:253,27,0 chrXV 1078444 . C T 460.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.060;DP=142;Dels=0.00;FS=18.451;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=9.38;MQ0=121;MQRankSum=-2.097;QD=3.24;ReadPosRankSum=2.097;SB=-2.302e+01 GT:AD:DP:GQ:PL 1/1:44,98:142:27:493,27,0 chrXV 1078509 . A G 53.97 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=6.02;MQ0=113;QD=0.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:121:9:86,9,0 chrXV 1078958 . C T 6044.01 filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=14;QD=25.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6044,634,0 chrXV 1079000 . T C 958.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.754;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=21.2831;MLEAC=1;MLEAF=0.500;MQ=24.57;MQ0=64;MQRankSum=2.379;QD=2.56;ReadPosRankSum=0.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:287,87:374:99:988,0,4718 chrXV 1079266 . C A 4459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.776;DP=531;Dels=0.00;FS=0.000;HaplotypeScore=55.0293;MLEAC=1;MLEAF=0.500;MQ=32.01;MQ0=38;MQRankSum=0.021;QD=8.40;ReadPosRankSum=0.734;SB=-2.253e+03 GT:AD:DP:GQ:PL 0/1:255,271:531:99:4459,0,4243 chrXV 1079402 . G A 1401.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.961;DP=434;Dels=0.00;FS=3.039;HaplotypeScore=34.8050;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=1;MQRankSum=1.133;QD=3.23;ReadPosRankSum=0.021;SB=-6.190e+02 GT:AD:DP:GQ:PL 0/1:329,103:434:99:1431,0,6612 chrXV 1079460 . A G 1771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.056;DP=460;Dels=0.00;FS=2.213;HaplotypeScore=28.0066;MLEAC=1;MLEAF=0.500;MQ=41.35;MQ0=2;MQRankSum=-1.906;QD=3.85;ReadPosRankSum=-0.898;SB=-9.310e+02 GT:AD:DP:GQ:PL 0/1:333,126:460:99:1801,0,6840 chrXV 1079744 . C T 731.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.474;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=21.1262;MLEAC=1;MLEAF=0.500;MQ=23.03;MQ0=183;MQRankSum=-1.135;QD=1.82;ReadPosRankSum=1.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:306,93:401:99:761,0,2896 chrXV 1079816 . G T 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=7.04;MQ0=233;MQRankSum=1.109;QD=0.36;ReadPosRankSum=-0.715;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:68,178:247:55:120,0,55 chrXV 1083260 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.27;MQ0=209;QD=0.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,210:217:6:53,6,0 chrXV 1083302 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.34;MQ0=68;QD=0.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:6:52,6,0 chrXV 1083439 . A T 200.01 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.37;MQ0=34;QD=4.44;SB=-4.699e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:27:233,27,0 chrXV 1083653 . G A 343 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.53;MQ0=47;QD=4.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:42:376,42,0 chrXV 1083684 . T C 316 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=14.19;MQ0=24;QD=4.33;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,72:73:39:349,39,0 chrXV 1091240 . T A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DP=35;Dels=0.00;FS=6.113;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=21;MQRankSum=0.212;QD=0.69;ReadPosRankSum=0.919;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:26,9:35:54:54,0,189 chrXV 1091241 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DP=34;Dels=0.00;FS=6.113;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.25;MQ0=20;MQRankSum=0.636;QD=0.62;ReadPosRankSum=1.202;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:25,9:34:51:51,0,169 chrXV 1091267 . G A 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=26;Dels=0.00;FS=5.237;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=10;MQRankSum=-0.227;QD=7.88;ReadPosRankSum=-0.793;SB=-7.100e+01 GT:AD:DP:GQ:PL 0/1:10,16:26:71:235,0,71 chrXV 1091291 . T G 52.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9779;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=10.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:5:9:85,9,0 chrXVI 6804 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrXVI 6807 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=11.761;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=0;MQRankSum=1.380;QD=4.13;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,2:6:6:56,6,0 chrXVI 6879 . T C 255 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=3;QD=8.50;SB=-8.695e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:30:288,30,0 chrXVI 6905 . T C 173.06 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.99;MQ0=14;QD=5.41;SB=-2.694e+01 GT:AD:DP:GQ:PL 1/1:2,30:32:21:206,21,0 chrXVI 6910 . C A 152.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=36;Dels=0.00;FS=6.284;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.87;MQ0=19;MQRankSum=-0.919;QD=4.23;ReadPosRankSum=-1.735;SB=-3.280e+00 GT:AD:DP:GQ:PL 0/1:19,16:36:8:182,0,8 chrXVI 7037 . C T 28.12 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.67;MQ0=25;MQRankSum=-0.651;QD=0.69;ReadPosRankSum=-0.434;SB=0.674 GT:AD:DP:GQ:PL 0/1:26,15:41:13:58,0,13 chrXVI 7043 . C A 25.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.67;MQ0=25;MQRankSum=-0.651;QD=0.61;ReadPosRankSum=-1.519;SB=0.674 GT:AD:DP:GQ:PL 0/1:26,15:41:13:55,0,13 chrXVI 7055 . C T 25.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.7384;MLEAC=1;MLEAF=0.500;MQ=12.77;MQ0=24;MQRankSum=-0.579;QD=0.64;ReadPosRankSum=-1.736;SB=0.674 GT:AD:DP:GQ:PL 0/1:25,14:39:13:55,0,13 chrXVI 7056 . C T 24.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.7384;MLEAC=1;MLEAF=0.500;MQ=12.77;MQ0=24;MQRankSum=-0.579;QD=0.62;ReadPosRankSum=-1.736;SB=0.674 GT:AD:DP:GQ:PL 0/1:24,14:39:13:54,0,13 chrXVI 7076 . T A 31.88 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.00;MQ0=10;QD=1.52;SB=11.38 GT:AD:DP:GQ:PL 1/1:10,10:21:6:63,6,0 chrXVI 7079 . T A 22.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.00;MQ0=10;MQRankSum=-0.158;QD=1.05;ReadPosRankSum=-1.739;SB=0.674 GT:AD:DP:GQ:PL 0/1:11,10:21:13:52,0,13 chrXVI 7087 . A G 18.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.47;MQ0=9;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.393;SB=0.674 GT:AD:DP:GQ:PL 0/1:10,9:19:13:48,0,13 chrXVI 7088 . C A 17.20 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.47;MQ0=9;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.393;SB=0.674 GT:AD:DP:GQ:PL 0/1:10,9:19:13:47,0,13 chrXVI 7090 . T C 19.17 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.92;MQ0=8;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-1.393;SB=0.674 GT:AD:DP:GQ:PL 0/1:7,10:18:13:49,0,13 chrXVI 7095 . C T 22.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.41;MQ0=7;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.393;SB=0.674 GT:AD:DP:GQ:PL 0/1:8,9:17:13:52,0,13 chrXVI 12381 . C T 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=6.09;MQ0=397;MQRankSum=2.097;QD=0.30;ReadPosRankSum=0.864;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:349,70:424:82:159,0,82 chrXVI 12457 . G T 395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DP=496;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=1;MLEAF=0.500;MQ=12.33;MQ0=375;MQRankSum=0.036;QD=0.80;ReadPosRankSum=-1.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:398,96:496:99:425,0,1893 chrXVI 12492 . C T 502.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.544;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=11.66;MQ0=348;MQRankSum=0.114;QD=1.12;ReadPosRankSum=0.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,80:450:99:532,0,1341 chrXVI 12519 . A C 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=9.92;MQ0=363;MQRankSum=1.677;QD=0.74;ReadPosRankSum=1.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:384,51:436:99:354,0,1028 chrXVI 12641 . G T 1309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;DP=354;Dels=0.00;FS=19.580;HaplotypeScore=15.2022;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=149;MQRankSum=1.441;QD=3.70;ReadPosRankSum=-0.701;SB=-5.210e+02 GT:AD:DP:GQ:PL 0/1:263,85:354:99:1339,0,2497 chrXVI 12653 . C T 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.462;DP=311;Dels=0.00;FS=26.601;HaplotypeScore=7.3041;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=130;MQRankSum=-0.428;QD=1.30;ReadPosRankSum=1.904;SB=-5.060e+02 GT:AD:DP:GQ:PL 0/1:238,71:311:99:434,0,2222 chrXVI 12654 . T C 432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.621;DP=305;Dels=0.00;FS=26.972;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=21.68;MQ0=127;MQRankSum=-0.091;QD=1.42;ReadPosRankSum=1.712;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:232,71:305:99:462,0,2162 chrXVI 12701 . G A 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DP=212;Dels=0.00;FS=3.326;HaplotypeScore=32.3087;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=115;MQRankSum=-5.495;QD=0.57;ReadPosRankSum=-3.440;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:113,99:212:99:151,0,1498 chrXVI 12703 . C T 541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;DP=213;Dels=0.00;FS=8.312;HaplotypeScore=32.3634;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=113;MQRankSum=1.250;QD=2.54;ReadPosRankSum=1.535;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:162,50:213:99:571,0,1061 chrXVI 12747 . G A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=212;Dels=0.00;FS=7.574;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.18;MQ0=134;MQRankSum=0.620;QD=0.53;ReadPosRankSum=-0.113;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:175,37:212:99:142,0,947 chrXVI 12788 . A G 208.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;DP=162;Dels=0.00;FS=6.500;HaplotypeScore=20.6288;MLEAC=1;MLEAF=0.500;MQ=18.33;MQ0=81;MQRankSum=1.631;QD=1.28;ReadPosRankSum=-0.659;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:132,30:162:99:238,0,673 chrXVI 12808 . A G 131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.895;DP=106;Dels=0.00;FS=3.928;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=64;MQRankSum=0.871;QD=1.24;ReadPosRankSum=-1.819;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:86,20:106:99:161,0,340 chrXVI 12828 . T A 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;DP=49;Dels=0.04;FS=1.777;HaplotypeScore=10.1278;MLEAC=1;MLEAF=0.500;MQ=31.94;MQ0=6;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.975;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:21,26:47:99:181,0,116 chrXVI 12999 . A G 62.97 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=3;QD=2.86;SB=-3.221e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:95,9,0 chrXVI 13053 . A G 1003 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.316;DP=61;Dels=0.00;FS=16.052;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=13;MQRankSum=0.748;QD=16.44;ReadPosRankSum=-1.058;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:13,48:61:55:1036,55,0 chrXVI 13084 . A T 1522 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;DP=74;Dels=0.00;FS=7.924;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=12;MQRankSum=0.224;QD=20.57;ReadPosRankSum=1.285;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:11,63:74:99:1555,127,0 chrXVI 13106 . A C 1365 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=8;QD=18.96;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:6,66:72:99:1398,141,0 chrXVI 13891 . C T 493.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=10.32;MQ0=267;MQRankSum=4.346;QD=1.58;ReadPosRankSum=-0.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,87:312:82:523,0,82 chrXVI 14011 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=472;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.40;MQ0=467;QD=0.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:363,105:472:6:53,6,0 chrXVI 14366 . C T 4090.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DP=462;Dels=0.00;FS=12.048;HaplotypeScore=13.6980;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=83;MQRankSum=-1.980;QD=8.85;ReadPosRankSum=-0.075;SB=-2.268e+03 GT:AD:DP:GQ:PL 0/1:219,242:462:99:4090,0,3587 chrXVI 14379 . A G 4451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DP=487;Dels=0.00;FS=23.104;HaplotypeScore=19.7033;MLEAC=1;MLEAF=0.500;MQ=37.40;MQ0=57;MQRankSum=-3.034;QD=9.14;ReadPosRankSum=0.895;SB=-2.208e+03 GT:AD:DP:GQ:PL 0/1:238,245:487:99:4451,0,4534 chrXVI 14437 . A G 504.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;DP=502;Dels=0.00;FS=19.637;HaplotypeScore=46.8342;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=2;MQRankSum=-2.604;QD=1.00;ReadPosRankSum=-0.560;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:413,83:502:99:534,0,8832 chrXVI 14446 . C T 385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.945;DP=501;Dels=0.00;FS=34.822;HaplotypeScore=41.3848;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=2;MQRankSum=-3.295;QD=0.77;ReadPosRankSum=0.061;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:416,84:501:99:415,0,9492 chrXVI 14456 . T C 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.683;DP=551;Dels=0.00;FS=25.553;HaplotypeScore=46.5043;MLEAC=1;MLEAF=0.500;MQ=50.80;MQ0=0;MQRankSum=-5.926;QD=0.36;ReadPosRankSum=1.153;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:455,93:551:99:230,0,10714 chrXVI 14612 . G T 2064.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=707;Dels=0.00;FS=0.330;HaplotypeScore=33.3875;MLEAC=1;MLEAF=0.500;MQ=51.64;MQ0=1;MQRankSum=-10.220;QD=2.92;ReadPosRankSum=0.083;SB=-9.540e+02 GT:AD:DP:GQ:PL 0/1:545,159:707:99:2094,0,13094 chrXVI 14667 . G T 2196.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DP=770;Dels=0.00;FS=8.165;HaplotypeScore=27.6624;MLEAC=1;MLEAF=0.500;MQ=51.79;MQ0=0;MQRankSum=-6.539;QD=2.85;ReadPosRankSum=0.236;SB=-1.386e+03 GT:AD:DP:GQ:PL 0/1:590,179:769:99:2226,0,12410 chrXVI 14741 . G A 1339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=781;Dels=0.00;FS=10.404;HaplotypeScore=53.4727;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=3;MQRankSum=-4.010;QD=1.71;ReadPosRankSum=-0.674;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:613,167:781:99:1369,0,12552 chrXVI 14772 . T A 1404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;DP=628;Dels=0.00;FS=10.461;HaplotypeScore=48.6233;MLEAC=1;MLEAF=0.500;MQ=49.32;MQ0=4;MQRankSum=-8.305;QD=2.24;ReadPosRankSum=-2.240;SB=-2.570e+02 GT:AD:DP:GQ:PL 0/1:495,132:628:99:1434,0,10314 chrXVI 14802 . A G 1294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.112;DP=580;Dels=0.00;FS=9.098;HaplotypeScore=158.3529;MLEAC=1;MLEAF=0.500;MQ=42.95;MQ0=6;MQRankSum=2.392;QD=2.23;ReadPosRankSum=-1.432;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:443,135:579:99:1324,0,9012 chrXVI 14803 . C T 1105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.438;DP=567;Dels=0.00;FS=0.000;HaplotypeScore=163.0303;MLEAC=1;MLEAF=0.500;MQ=42.82;MQ0=6;MQRankSum=-9.394;QD=1.95;ReadPosRankSum=1.968;SB=-2.900e+02 GT:AD:DP:GQ:PL 0/1:456,111:567:99:1135,0,8331 chrXVI 14828 . T A 4582.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.046;DP=498;Dels=0.00;FS=3.080;HaplotypeScore=152.2923;MLEAC=1;MLEAF=0.500;MQ=35.27;MQ0=7;MQRankSum=3.397;QD=9.20;ReadPosRankSum=0.659;SB=-1.433e+03 GT:AD:DP:GQ:PL 0/1:239,257:498:99:4582,0,1532 chrXVI 14863 . C T 844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.495;DP=413;Dels=0.00;FS=0.962;HaplotypeScore=29.3826;MLEAC=1;MLEAF=0.500;MQ=29.51;MQ0=27;MQRankSum=-0.404;QD=2.04;ReadPosRankSum=1.058;SB=-3.740e+02 GT:AD:DP:GQ:PL 0/1:316,96:413:99:874,0,6058 chrXVI 15039 . G T 11957.01 filter AC=2;AF=1.00;AN=2;DP=501;Dels=0.00;FS=0.000;HaplotypeScore=19.9955;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=37;QD=23.87;SB=-4.538e+03 GT:AD:DP:GQ:PL 1/1:0,501:501:99:11957,1193,0 chrXVI 15043 . A G 772.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.255;DP=513;Dels=0.00;FS=0.000;HaplotypeScore=23.1990;MLEAC=1;MLEAF=0.500;MQ=39.48;MQ0=37;MQRankSum=0.538;QD=1.50;ReadPosRankSum=-0.616;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:417,93:513:99:802,0,8630 chrXVI 15157 . C T 1003.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DP=512;Dels=0.00;FS=1.930;HaplotypeScore=40.8299;MLEAC=1;MLEAF=0.500;MQ=30.32;MQ0=154;MQRankSum=0.052;QD=1.96;ReadPosRankSum=-2.007;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:359,150:512:99:1033,0,4683 chrXVI 15475 . G C 4139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.098;DP=367;Dels=0.00;FS=4.106;HaplotypeScore=32.9605;MLEAC=1;MLEAF=0.500;MQ=52.04;MQ0=10;MQRankSum=0.405;QD=11.28;ReadPosRankSum=6.719;SB=-1.902e+03 GT:AD:DP:GQ:PL 0/1:167,194:367:99:4139,0,2687 chrXVI 15589 . A C 707.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DP=451;Dels=0.00;FS=2.711;HaplotypeScore=36.6545;MLEAC=1;MLEAF=0.500;MQ=41.57;MQ0=11;MQRankSum=0.921;QD=1.57;ReadPosRankSum=1.002;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:364,83:451:99:737,0,7256 chrXVI 15669 . C A 4867.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.144;DP=471;Dels=0.00;FS=319.439;HaplotypeScore=30.9063;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=12;MQRankSum=-15.972;QD=10.33;ReadPosRankSum=0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:257,214:471:99:4867,0,5317 chrXVI 15762 . C A 10175.01 filter AC=2;AF=1.00;AN=2;DP=472;Dels=0.00;FS=0.000;HaplotypeScore=25.0239;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=83;QD=21.56;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,469:472:99:10175,995,0 chrXVI 15852 . G A 2754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;DP=676;Dels=0.00;FS=0.643;HaplotypeScore=64.5504;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=4;MQRankSum=-5.539;QD=4.07;ReadPosRankSum=-2.381;SB=-1.362e+03 GT:AD:DP:GQ:PL 0/1:483,190:676:99:2784,0,9631 chrXVI 16098 . G T 4580.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;DP=583;Dels=0.00;FS=125.904;HaplotypeScore=50.9907;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=5;MQRankSum=2.775;QD=7.86;ReadPosRankSum=-1.465;SB=-1.273e+03 GT:AD:DP:GQ:PL 0/1:303,277:583:99:4580,0,4888 chrXVI 16122 . G A 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.864;DP=637;Dels=0.00;FS=129.738;HaplotypeScore=22.1137;MLEAC=1;MLEAF=0.500;MQ=30.05;MQ0=4;MQRankSum=-2.545;QD=1.08;ReadPosRankSum=-2.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:524,112:637:99:720,0,9555 chrXVI 16137 . C T 587.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.052;DP=644;Dels=0.00;FS=69.571;HaplotypeScore=39.5984;MLEAC=1;MLEAF=0.500;MQ=30.69;MQ0=3;MQRankSum=-4.675;QD=0.91;ReadPosRankSum=-0.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:526,112:644:99:617,0,10194 chrXVI 16140 . C T 454.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=645;Dels=0.00;FS=76.085;HaplotypeScore=40.8566;MLEAC=1;MLEAF=0.500;MQ=30.91;MQ0=3;MQRankSum=-5.630;QD=0.70;ReadPosRankSum=0.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:534,109:645:99:484,0,10569 chrXVI 16146 . T C 375.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DP=652;Dels=0.00;FS=86.450;HaplotypeScore=40.9500;MLEAC=1;MLEAF=0.500;MQ=31.17;MQ0=3;MQRankSum=-8.930;QD=0.58;ReadPosRankSum=1.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:542,108:652:99:405,0,10923 chrXVI 16149 . G A 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=652;Dels=0.00;FS=89.219;HaplotypeScore=32.9852;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=3;MQRankSum=-6.028;QD=0.48;ReadPosRankSum=0.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:537,113:652:99:341,0,10783 chrXVI 16167 . G T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DP=620;Dels=0.00;FS=65.108;HaplotypeScore=37.9975;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=5;MQRankSum=-9.849;QD=0.11;ReadPosRankSum=0.977;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:504,115:620:98:98,0,10198 chrXVI 16176 . G C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DP=613;Dels=0.00;FS=99.499;HaplotypeScore=40.3896;MLEAC=1;MLEAF=0.500;MQ=31.35;MQ0=7;MQRankSum=-9.668;QD=0.08;ReadPosRankSum=0.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:502,109:613:79:79,0,10004 chrXVI 16188 . G T 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.561;DP=594;Dels=0.00;FS=83.085;HaplotypeScore=34.2095;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=9;MQRankSum=-8.428;QD=0.13;ReadPosRankSum=-0.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:487,103:594:99:110,0,9628 chrXVI 16500 . A G 7210.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.286;DP=444;Dels=0.00;FS=11.343;HaplotypeScore=23.4060;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=28;MQRankSum=-5.347;QD=16.24;ReadPosRankSum=5.296;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:10,433:444:99:7210,733,0 chrXVI 16662 . A G 6437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DP=550;Dels=0.00;FS=80.523;HaplotypeScore=23.4517;MLEAC=1;MLEAF=0.500;MQ=35.49;MQ0=22;MQRankSum=-15.973;QD=11.70;ReadPosRankSum=0.628;SB=-1.228e+03 GT:AD:DP:GQ:PL 0/1:188,362:550:99:6437,0,3294 chrXVI 16689 . G A 3228.29 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.677;DP=425;Dels=0.00;FS=190.633;HaplotypeScore=15.6808;MLEAC=1;MLEAF=0.500;MQ=34.98;MQ0=8;MQRankSum=-14.525;QD=7.60;ReadPosRankSum=-1.276;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:209,215:425:99:3259,0,4411 chrXVI 16737 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=0;MQRankSum=-12.216;QD=0.11;ReadPosRankSum=-0.754;SB=-3.630e+02 GT:AD:DP:GQ:PL 0/1:181,131:312:65:65,0,4268 chrXVI 16738 . A G 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.864;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=0;MQRankSum=-11.888;QD=0.35;ReadPosRankSum=-0.518;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:178,133:312:99:140,0,4399 chrXVI 16745 . A G 662.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.179;DP=333;Dels=0.00;FS=1.300;HaplotypeScore=9.6124;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=0;MQRankSum=-9.190;QD=1.99;ReadPosRankSum=-0.512;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:167,164:333:99:692,0,4119 chrXVI 16749 . A C 925.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.217;DP=344;Dels=0.00;FS=3.468;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=35.44;MQ0=0;MQRankSum=-7.453;QD=2.69;ReadPosRankSum=-0.862;SB=-8.000e+02 GT:AD:DP:GQ:PL 0/1:159,185:344:99:955,0,3960 chrXVI 16931 . A G 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.075;DP=163;Dels=0.00;FS=24.669;HaplotypeScore=96.7297;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;MQRankSum=1.939;QD=6.98;ReadPosRankSum=-0.027;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:6,75:163:99:1171,123,0 chrXVI 16947 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DP=189;Dels=0.01;FS=108.433;HaplotypeScore=28.9408;MLEAC=1;MLEAF=0.500;MQ=43.05;MQ0=0;MQRankSum=3.268;QD=0.09;ReadPosRankSum=-3.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,51:188:46:46,0,929 chrXVI 16980 . T A 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=36.8232;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;MQRankSum=0.395;QD=15.34;ReadPosRankSum=2.886;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:5,201:206:99:3194,321,0 chrXVI 17345 . G A 8374.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=18.6000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.77;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:8374,800,0 chrXVI 17360 . G T 1552.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=326;Dels=0.00;FS=13.210;HaplotypeScore=21.1850;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-1.810;QD=4.76;ReadPosRankSum=-0.053;SB=-1.012e+03 GT:AD:DP:GQ:PL 0/1:222,103:326:99:1582,0,5148 chrXVI 17412 . A T 9859.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=410;Dels=0.00;FS=4.338;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.005;QD=24.05;ReadPosRankSum=1.698;SB=-4.515e+03 GT:AD:DP:GQ:PL 1/1:1,409:410:99:9859,944,0 chrXVI 17554 . T G 1647.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.069;DP=361;Dels=0.00;FS=3.238;HaplotypeScore=10.1434;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=-3.474;QD=4.56;ReadPosRankSum=1.331;SB=-8.650e+02 GT:AD:DP:GQ:PL 0/1:263,98:361:99:1677,0,5841 chrXVI 17634 . T G 5822.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;DP=397;Dels=0.00;FS=2.336;HaplotypeScore=32.6142;MLEAC=1;MLEAF=0.500;MQ=51.76;MQ0=0;MQRankSum=-9.741;QD=14.67;ReadPosRankSum=2.408;SB=-2.497e+03 GT:AD:DP:GQ:PL 0/1:134,260:397:99:5822,0,2155 chrXVI 17739 . C A 2001.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=329;Dels=0.00;FS=0.431;HaplotypeScore=20.3963;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=8.358;QD=6.08;ReadPosRankSum=0.709;SB=-1.101e+03 GT:AD:DP:GQ:PL 0/1:223,104:329:99:2031,0,5338 chrXVI 17787 . C T 4724.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;DP=312;Dels=0.00;FS=4.812;HaplotypeScore=24.1755;MLEAC=1;MLEAF=0.500;MQ=49.73;MQ0=0;MQRankSum=-8.119;QD=15.14;ReadPosRankSum=0.725;SB=-2.408e+03 GT:AD:DP:GQ:PL 0/1:99,212:312:99:4724,0,1880 chrXVI 19120 . C T 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=13.91;MQ0=52;MQRankSum=0.964;QD=2.26;ReadPosRankSum=1.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,39:116:99:292,0,263 chrXVI 19989 . G C 1480.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DP=184;Dels=0.00;FS=6.391;HaplotypeScore=8.6642;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.994;QD=8.04;ReadPosRankSum=0.303;SB=-7.170e+02 GT:AD:DP:GQ:PL 0/1:99,80:184:99:1510,0,2017 chrXVI 21910 . G A 2473.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=20.8019;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=1.373;QD=11.14;ReadPosRankSum=0.411;SB=-1.244e+03 GT:AD:DP:GQ:PL 0/1:107,112:222:99:2503,0,2331 chrXVI 21970 . C A 6934.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=15.0153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6934,670,0 chrXVI 22192 . C T 3660.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=364;Dels=0.00;FS=7.601;HaplotypeScore=35.7398;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.011;QD=10.05;ReadPosRankSum=-0.642;SB=-2.044e+03 GT:AD:DP:GQ:PL 0/1:177,185:364:99:3660,0,3799 chrXVI 24494 . A G 3411.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=369;Dels=0.00;FS=1.723;HaplotypeScore=22.3561;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=0.503;QD=9.24;ReadPosRankSum=-0.259;SB=-1.720e+03 GT:AD:DP:GQ:PL 0/1:188,179:369:99:3411,0,3467 chrXVI 24575 . T C 3383.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;DP=297;Dels=0.00;FS=1.926;HaplotypeScore=14.1303;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.379;QD=11.39;ReadPosRankSum=0.223;SB=-1.795e+03 GT:AD:DP:GQ:PL 0/1:143,153:297:99:3383,0,3021 chrXVI 24645 . G A 6569.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.56;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6569,634,0 chrXVI 24701 . G A 2665.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;DP=278;Dels=0.00;FS=2.625;HaplotypeScore=12.7476;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-1.386;QD=9.59;ReadPosRankSum=0.239;SB=-1.440e+03 GT:AD:DP:GQ:PL 0/1:139,139:278:99:2695,0,2819 chrXVI 24708 . C T 2583.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DP=288;Dels=0.00;FS=0.430;HaplotypeScore=12.7476;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-0.786;QD=8.97;ReadPosRankSum=0.098;SB=-1.442e+03 GT:AD:DP:GQ:PL 0/1:140,145:288:99:2613,0,2985 chrXVI 24966 . A T 1490.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.582;DP=253;Dels=0.00;FS=20.190;HaplotypeScore=13.5589;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-7.394;QD=5.89;ReadPosRankSum=-0.280;SB=-7.070e+02 GT:AD:DP:GQ:PL 0/1:153,100:253:99:1520,0,3544 chrXVI 24974 . G T 1594.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.443;DP=242;Dels=0.00;FS=34.329;HaplotypeScore=94.7389;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-7.585;QD=6.59;ReadPosRankSum=-0.457;SB=-5.910e+02 GT:AD:DP:GQ:PL 0/1:144,98:242:99:1624,0,3089 chrXVI 24980 . A T 1017.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;DP=244;Dels=0.00;FS=34.625;HaplotypeScore=102.4587;MLEAC=1;MLEAF=0.500;MQ=52.13;MQ0=0;MQRankSum=-8.514;QD=4.17;ReadPosRankSum=0.080;SB=-5.060e+02 GT:AD:DP:GQ:PL 0/1:146,98:244:99:1047,0,3341 chrXVI 25057 . G A 1880.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.948;DP=248;Dels=0.00;FS=0.998;HaplotypeScore=9.5576;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=-4.407;QD=7.58;ReadPosRankSum=-1.396;SB=-1.115e+03 GT:AD:DP:GQ:PL 0/1:124,124:248:99:1910,0,2761 chrXVI 25069 . T C 1947.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;DP=250;Dels=0.00;FS=4.453;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=54.64;MQ0=0;MQRankSum=-4.429;QD=7.79;ReadPosRankSum=-1.619;SB=-9.940e+02 GT:AD:DP:GQ:PL 0/1:128,122:250:99:1977,0,2891 chrXVI 25078 . T C 1796.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;DP=256;Dels=0.00;FS=5.130;HaplotypeScore=6.0764;MLEAC=1;MLEAF=0.500;MQ=54.54;MQ0=0;MQRankSum=-6.267;QD=7.02;ReadPosRankSum=-1.518;SB=-1.036e+03 GT:AD:DP:GQ:PL 0/1:129,127:256:99:1826,0,3063 chrXVI 25079 . G A 1896.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.138;DP=257;Dels=0.00;FS=5.104;HaplotypeScore=6.8104;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=0;MQRankSum=-6.305;QD=7.38;ReadPosRankSum=-1.346;SB=-1.147e+03 GT:AD:DP:GQ:PL 0/1:129,127:257:99:1926,0,2946 chrXVI 25149 . C T 1478.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.156;DP=239;Dels=0.00;FS=42.621;HaplotypeScore=7.2948;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=-1.792;QD=6.18;ReadPosRankSum=-1.000;SB=-5.280e+02 GT:AD:DP:GQ:PL 0/1:130,107:239:99:1508,0,3062 chrXVI 25159 . G T 1780.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;DP=236;Dels=0.00;FS=24.874;HaplotypeScore=10.4496;MLEAC=1;MLEAF=0.500;MQ=55.06;MQ0=0;MQRankSum=-3.976;QD=7.54;ReadPosRankSum=-3.074;SB=-6.790e+02 GT:AD:DP:GQ:PL 0/1:125,111:236:99:1810,0,2984 chrXVI 25194 . A G 1280.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.033;DP=233;Dels=0.00;FS=14.514;HaplotypeScore=9.9793;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-6.741;QD=5.49;ReadPosRankSum=1.172;SB=-8.430e+02 GT:AD:DP:GQ:PL 0/1:121,112:233:99:1310,0,2971 chrXVI 25200 . C T 1391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.614;DP=239;Dels=0.00;FS=12.746;HaplotypeScore=11.1367;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=0;MQRankSum=-6.273;QD=5.82;ReadPosRankSum=1.734;SB=-1.122e+03 GT:AD:DP:GQ:PL 0/1:122,116:239:99:1421,0,2891 chrXVI 25209 . T G 1491.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=251;Dels=0.00;FS=5.937;HaplotypeScore=19.4217;MLEAC=1;MLEAF=0.500;MQ=53.00;MQ0=0;MQRankSum=-6.835;QD=5.94;ReadPosRankSum=1.855;SB=-1.289e+03 GT:AD:DP:GQ:PL 0/1:124,126:251:99:1521,0,2724 chrXVI 25269 . T C 2310.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DP=279;Dels=0.00;FS=12.984;HaplotypeScore=22.3261;MLEAC=1;MLEAF=0.500;MQ=55.00;MQ0=0;MQRankSum=-6.044;QD=8.28;ReadPosRankSum=-2.294;SB=-1.063e+03 GT:AD:DP:GQ:PL 0/1:142,134:279:99:2340,0,3143 chrXVI 25524 . A G 2022.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.844;DP=271;Dels=0.00;FS=3.381;HaplotypeScore=20.8901;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-2.283;QD=7.46;ReadPosRankSum=0.642;SB=-1.008e+03 GT:AD:DP:GQ:PL 0/1:154,114:271:99:2052,0,3356 chrXVI 25536 . C T 2274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.885;DP=278;Dels=0.00;FS=2.629;HaplotypeScore=12.2847;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-2.876;QD=8.18;ReadPosRankSum=-1.820;SB=-1.286e+03 GT:AD:DP:GQ:PL 0/1:144,133:278:99:2304,0,3054 chrXVI 25566 . T C 2736.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210;DP=298;Dels=0.00;FS=3.142;HaplotypeScore=18.2176;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=0.470;QD=9.18;ReadPosRankSum=2.328;SB=-1.562e+03 GT:AD:DP:GQ:PL 0/1:156,142:298:99:2766,0,3143 chrXVI 25632 . A G 10155.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=375;Dels=0.00;FS=17.440;HaplotypeScore=25.0595;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.495;QD=27.08;ReadPosRankSum=3.401;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:4,370:375:99:10155,989,0 chrXVI 26069 . G C 48.97 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=5.4249;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=12;QD=1.19;SB=-5.347e+01 GT:AD:DP:GQ:PL 1/1:0,35:40:9:81,9,0 chrXVI 26081 . G A 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=7.17;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:97,12,0 chrXVI 26082 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=6.95;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:95,12,0 chrXVI 26084 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=1.55;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:45,6,0 chrXVI 26104 . T C 620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;MQRankSum=-1.732;QD=13.19;ReadPosRankSum=1.659;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:69:653,69,0 chrXVI 26397 . A G 2940 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.71;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2973,292,0 chrXVI 26602 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.86;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2544,255,0 chrXVI 27969 . G T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4166,409,0 chrXVI 28027 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=155;Dels=0.00;FS=2.875;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.003;QD=25.10;ReadPosRankSum=2.370;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3891,388,0 chrXVI 28437 . T C 5525.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.5316;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.82;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5525,550,0 chrXVI 28864 . T C 5698.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5698,562,0 chrXVI 29749 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2783,271,0 chrXVI 30586 . C G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.70;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3436,366,0 chrXVI 30803 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=2.999;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.845;QD=26.66;ReadPosRankSum=2.381;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3865,382,0 chrXVI 35776 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.26;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3462,346,0 chrXVI 36977 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.53;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4218,406,0 chrXVI 38391 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.9025;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.44;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4775,481,0 chrXVI 40552 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=172;Dels=0.00;FS=6.690;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.237;QD=21.23;ReadPosRankSum=1.711;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3652,373,0 chrXVI 41286 . T C 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.0521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.109;QD=24.15;ReadPosRankSum=1.638;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5434,535,0 chrXVI 42805 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.10;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2493,238,0 chrXVI 43046 . T G 509 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.9782;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=25.45;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:54:542,54,0 chrXVI 43388 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4268,415,0 chrXVI 44225 . G A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.22;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3892,376,0 chrXVI 45292 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.20;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3083,298,0 chrXVI 45370 . T G 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.181;DP=103;Dels=0.00;FS=131.450;HaplotypeScore=14.0493;MLEAC=1;MLEAF=0.500;MQ=58.19;MQ0=0;MQRankSum=-0.785;QD=0.58;ReadPosRankSum=-4.215;SB=0.325 GT:AD:DP:GQ:PL 0/1:76,25:103:90:90,0,1404 chrXVI 51430 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2947,300,0 chrXVI 53867 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.848;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.645;QD=23.71;ReadPosRankSum=2.404;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3864,382,0 chrXVI 53943 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.285;QD=23.79;ReadPosRankSum=1.712;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4092,406,0 chrXVI 55419 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.85;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2825,288,0 chrXVI 55474 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3518,349,0 chrXVI 56475 . A G 66.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=9.57;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:99,9,0 chrXVI 56480 . C T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=5.11;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:78,9,0 chrXVI 56481 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=5.11;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:78,9,0 chrXVI 56487 . G A 118.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=9.86;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:151,15,0 chrXVI 56490 . T G 115.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=9.61;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:148,15,0 chrXVI 56527 . A T 119.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;QD=5.96;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:152,15,0 chrXVI 56534 . G A 121.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;QD=6.06;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:154,15,0 chrXVI 56535 . C T 121.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;QD=6.06;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:154,15,0 chrXVI 56538 . A G 116.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=8.9777;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;QD=5.81;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:149,15,0 chrXVI 56540 . G T 121.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=8.9777;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=2;QD=6.06;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:154,15,0 chrXVI 56557 . T G 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=2.89;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:2,9:11:6:63,6,0 chrXVI 56560 . A G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=2.52;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:2,9:11:6:59,6,0 chrXVI 56565 . T A 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=2.89;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:2,9:11:6:63,6,0 chrXVI 62714 . C T 19.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DP=12;Dels=0.00;FS=7.404;HaplotypeScore=10.2178;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=1;MQRankSum=2.359;QD=1.59;ReadPosRankSum=-2.637;SB=-1.522e-02 GT:AD:DP:GQ:PL 0/1:6,6:12:23:49,0,23 chrXVI 62716 . C A 66.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;DP=16;Dels=0.00;FS=9.590;HaplotypeScore=4.4694;MLEAC=1;MLEAF=0.500;MQ=31.73;MQ0=1;MQRankSum=2.667;QD=4.13;ReadPosRankSum=-2.933;SB=-3.906e-02 GT:AD:DP:GQ:PL 0/1:6,9:16:16:96,0,16 chrXVI 62720 . A T 222.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.502;DP=54;Dels=0.00;FS=8.841;HaplotypeScore=6.0468;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=1;MQRankSum=1.141;QD=4.11;ReadPosRankSum=-1.963;SB=-3.171e+02 GT:AD:DP:GQ:PL 1/1:6,48:54:1:251,1,0 chrXVI 65188 . G A 5704.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=20.0442;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.05;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:5704,547,0 chrXVI 66527 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.98;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3747,367,0 chrXVI 67558 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.073;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.534;QD=24.18;ReadPosRankSum=1.683;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3433,337,0 chrXVI 67723 . C A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3554,340,0 chrXVI 68882 . G C 3684.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=27.09;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3684,370,0 chrXVI 69311 . A T 2443 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.41;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2476,235,0 chrXVI 69402 . T A 1937 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.06;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1970,186,0 chrXVI 70402 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=141;Dels=0.00;FS=5.568;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.196;QD=23.67;ReadPosRankSum=2.950;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:3338,325,0 chrXVI 70567 . A C 5364.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7728;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=28.23;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:5364,532,0 chrXVI 72276 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.89;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3573,352,0 chrXVI 72506 . G T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.49;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4080,403,0 chrXVI 72592 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.464;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.468;QD=26.86;ReadPosRankSum=1.706;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3545,349,0 chrXVI 72835 . C G 5508.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.5524;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=27.27;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5508,541,0 chrXVI 72872 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.288;QD=24.81;ReadPosRankSum=1.625;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4863,475,0 chrXVI 72884 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.37;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4511,448,0 chrXVI 73071 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=23.41;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2631,247,0 chrXVI 73213 . T G 1268 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=27.57;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1301,126,0 chrXVI 73217 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=30.60;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1318,123,0 chrXVI 73338 . C G 1482 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1515,150,0 chrXVI 73830 . C G 2209 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.8221;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.38;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2242,219,0 chrXVI 74040 . G C 870 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=28.06;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:903,90,0 chrXVI 74327 . C T 5200.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=27.96;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5200,505,0 chrXVI 74459 . C A 8583.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=24.0159;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.62;SB=-4.010e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:8583,818,0 chrXVI 74823 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=26.34;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3687,352,0 chrXVI 74884 . G C 2612 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.09;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2645,279,0 chrXVI 74885 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.14;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2631,282,0 chrXVI 75307 . G C 7965.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.86;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,300:308:99:7965,785,0 chrXVI 75329 . T C 7842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=5.2497;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.328;QD=25.63;ReadPosRankSum=1.687;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:1,305:306:99:7842,781,0 chrXVI 75355 . A G 7091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.114;DP=273;Dels=0.00;FS=12.035;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.768;QD=25.97;ReadPosRankSum=2.842;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:3,270:273:99:7091,664,0 chrXVI 75389 . A C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=185;Dels=0.00;FS=6.067;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.557;QD=21.74;ReadPosRankSum=2.951;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4022,397,0 chrXVI 75461 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=192.1319;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.69;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4194,412,0 chrXVI 75549 . G A 5404.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.90;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5404,541,0 chrXVI 77714 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6459;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.70;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4397,433,0 chrXVI 77752 . C T 4890.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.29;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4890,472,0 chrXVI 77854 . C G 4367.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.99;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4367,439,0 chrXVI 78094 . T G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.156;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.028;QD=23.62;ReadPosRankSum=1.656;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4299,433,0 chrXVI 78691 . T A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.53;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3957,379,0 chrXVI 79268 . C A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.70;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4598,442,0 chrXVI 79670 . T A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.04;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3758,370,0 chrXVI 80834 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3590,355,0 chrXVI 81157 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.22;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4615,439,0 chrXVI 82074 . C G 5515.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.0322;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.47;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:5515,556,0 chrXVI 82177 . C T 5457.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=28.72;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:5457,517,0 chrXVI 82212 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3748;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.85;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4860,469,0 chrXVI 83513 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.5883;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.91;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5132,502,0 chrXVI 83595 . C T 6795.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.2137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6795,646,0 chrXVI 84033 . G A 6602.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.4646;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.39;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6602,634,0 chrXVI 84945 . G A 4780.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.12;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4780,484,0 chrXVI 87193 . A G 4207.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4207,412,0 chrXVI 89283 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.98;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:4182,418,0 chrXVI 90265 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.63;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3155,304,0 chrXVI 90431 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.121;QD=24.98;ReadPosRankSum=1.692;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2181,216,0 chrXVI 90760 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.71;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2464,235,0 chrXVI 90904 . A T 2952 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2985,289,0 chrXVI 91018 . A G 2548 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.81;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2581,255,0 chrXVI 91219 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2541,244,0 chrXVI 91357 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.04;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3541,349,0 chrXVI 91540 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=6.837;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.090;QD=25.09;ReadPosRankSum=2.417;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3788,370,0 chrXVI 91564 . G A 4507.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.04;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4507,433,0 chrXVI 91792 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.295;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6599;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.451;QD=23.62;ReadPosRankSum=-1.674;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2868,266,0 chrXVI 91999 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.54;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4297,421,0 chrXVI 92122 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.203;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.310;QD=21.11;ReadPosRankSum=1.672;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2461,246,0 chrXVI 92131 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.42;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2656,250,0 chrXVI 92515 . T A 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.561;QD=27.44;ReadPosRankSum=1.708;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3897,373,0 chrXVI 92608 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.18;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3822,367,0 chrXVI 93103 . C A 2868 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.58;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2901,280,0 chrXVI 93137 . T A 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.964;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.530;QD=25.61;ReadPosRankSum=1.707;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3508,328,0 chrXVI 93364 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4511,436,0 chrXVI 93505 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.9855;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.371;QD=23.74;ReadPosRankSum=1.715;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4819,487,0 chrXVI 93676 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.76;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3761,361,0 chrXVI 93712 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.614;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.282;QD=24.23;ReadPosRankSum=1.687;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3756,379,0 chrXVI 93759 . G C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4752;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.01;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4276,421,0 chrXVI 93841 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.76;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3297,328,0 chrXVI 93959 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1454;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.99;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3508,343,0 chrXVI 93996 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=3.023;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.404;QD=24.98;ReadPosRankSum=2.337;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3272,322,0 chrXVI 94145 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2521,244,0 chrXVI 94218 . T C 2203 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2236,219,0 chrXVI 95333 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.53;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3276,322,0 chrXVI 95804 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.57;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3714,370,0 chrXVI 96457 . T A 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.070;QD=28.34;ReadPosRankSum=1.710;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4450,427,0 chrXVI 97006 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.01;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3770,370,0 chrXVI 97582 . A G 1315 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=15;MQRankSum=-1.732;QD=9.01;ReadPosRankSum=1.679;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1348,132,0 chrXVI 97609 . A G 154.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=11.71;MQ0=24;MQRankSum=-1.732;QD=1.16;ReadPosRankSum=1.700;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,132:133:18:187,18,0 chrXVI 97621 . T C 430 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=136;Dels=0.00;FS=3.283;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.14;MQ0=21;MQRankSum=-1.732;QD=3.16;ReadPosRankSum=1.702;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,135:136:48:463,48,0 chrXVI 97633 . C T 1080 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=16;QD=7.06;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1113,117,0 chrXVI 98068 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.43;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4653,457,0 chrXVI 98236 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=3.003;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.024;QD=23.76;ReadPosRankSum=2.402;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3707,370,0 chrXVI 98320 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.61;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3987,391,0 chrXVI 98464 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.20;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3058,295,0 chrXVI 98717 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.19;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2589,244,0 chrXVI 98825 . A T 2781 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=27.53;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2814,271,0 chrXVI 98881 . G T 2489 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.83;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,104:109:99:2522,244,0 chrXVI 98933 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.202;QD=26.17;ReadPosRankSum=1.701;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2964,292,0 chrXVI 99028 . C G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=118.5664;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=25.37;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3298,339,0 chrXVI 99055 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=21.33;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2848,280,0 chrXVI 99062 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=19.79;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2566,244,0 chrXVI 99097 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.050;QD=18.92;ReadPosRankSum=1.705;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2474,244,0 chrXVI 99124 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=146;Dels=0.00;FS=2.929;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.968;QD=18.87;ReadPosRankSum=2.415;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:2788,274,0 chrXVI 99139 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.05;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2875,286,0 chrXVI 99211 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=22.86;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2936,294,0 chrXVI 99227 . T A 2714 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.89;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2747,276,0 chrXVI 99253 . C G 1986 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=20.91;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2019,204,0 chrXVI 99260 . A C 1949 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=22.66;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1982,195,0 chrXVI 99402 . C A 2299 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=25.83;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2332,220,0 chrXVI 99466 . A T 87.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.680;DP=83;Dels=0.00;FS=1.143;HaplotypeScore=76.2283;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=2.721;QD=1.05;ReadPosRankSum=-4.424;SB=-5.826e+01 GT:AD:DP:GQ:PL 1/1:63,20:83:15:120,15,0 chrXVI 99579 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.084;QD=18.75;ReadPosRankSum=1.676;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2377,249,0 chrXVI 99582 . A C 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=5.101;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.183;QD=19.08;ReadPosRankSum=1.704;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2399,246,0 chrXVI 99598 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.53;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2703,262,0 chrXVI 100197 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.05;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2438,243,0 chrXVI 100419 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3571,364,0 chrXVI 100535 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.75;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3762,376,0 chrXVI 100561 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.61;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3573,343,0 chrXVI 101471 . T A 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.469;QD=26.60;ReadPosRankSum=1.651;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2294,222,0 chrXVI 101504 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9359;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=25.49;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2098,201,0 chrXVI 101574 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.420;HaplotypeScore=5.1088;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.732;QD=26.15;ReadPosRankSum=1.649;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:2230,225,0 chrXVI 101698 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.74;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2581,258,0 chrXVI 101755 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.53;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2765,274,0 chrXVI 101782 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=26.52;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3421,334,0 chrXVI 101890 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.22;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3697,364,0 chrXVI 101962 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.126;DP=208;Dels=0.00;FS=10.322;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.401;QD=25.45;ReadPosRankSum=4.099;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:6,202:208:99:5294,520,0 chrXVI 102121 . G A 6557.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.22;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6557,619,0 chrXVI 102244 . A C 4519.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.0833;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.37;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4519,478,0 chrXVI 102331 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.51;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4137,412,0 chrXVI 102343 . G T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.98;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3654,355,0 chrXVI 102370 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.675;QD=22.35;ReadPosRankSum=1.035;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3464,331,0 chrXVI 102421 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.599;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.927;QD=24.83;ReadPosRankSum=1.708;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3550,346,0 chrXVI 102546 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.522;HaplotypeScore=12.6644;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.325;QD=26.11;ReadPosRankSum=1.709;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3995,391,0 chrXVI 102652 . T C 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.445;QD=25.22;ReadPosRankSum=1.666;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:5297,544,0 chrXVI 102792 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.93;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4089,400,0 chrXVI 102899 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=146;Dels=0.00;FS=2.576;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.131;QD=25.53;ReadPosRankSum=2.911;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3727,370,0 chrXVI 102946 . G C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=27.59;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3724,370,0 chrXVI 103007 . A C 3183 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.30;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3216,319,0 chrXVI 103016 . A T 2955 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.27;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2988,297,0 chrXVI 103137 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.70;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:4394,427,0 chrXVI 103531 . T C 4507.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.54;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4507,445,0 chrXVI 103537 . G A 4381.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.06;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4381,421,0 chrXVI 103612 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.00;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3023,304,0 chrXVI 103942 . C T 5034.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.08;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:5034,502,0 chrXVI 104047 . G A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.04;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4792,457,0 chrXVI 104203 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=26.23;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4065,406,0 chrXVI 104284 . A G 3126 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1302;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.81;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3159,321,0 chrXVI 104305 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.914;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-2.011;QD=27.16;ReadPosRankSum=2.415;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3802,370,0 chrXVI 104428 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=26.16;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4788,475,0 chrXVI 104443 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=26.16;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4551,451,0 chrXVI 104754 . T C 468 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:501,51,0 chrXVI 104784 . C T 573 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:57:606,57,0 chrXVI 105267 . C T 5648.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=28.38;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5648,532,0 chrXVI 105282 . C T 5223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.382;QD=26.65;ReadPosRankSum=-1.164;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:5223,480,0 chrXVI 105285 . C T 5148.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=27.53;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5148,487,0 chrXVI 105527 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=13.2908;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.61;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2086,201,0 chrXVI 105791 . G C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=11.9529;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=27.01;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3782,370,0 chrXVI 105814 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=15.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2140,255,0 chrXVI 105817 . T A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=6.314;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=-1.166;QD=15.65;ReadPosRankSum=2.395;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2161,255,0 chrXVI 105834 . A C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.096;QD=22.85;ReadPosRankSum=1.708;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3290,331,0 chrXVI 105948 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=22.75;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4026,406,0 chrXVI 105953 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=23.18;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3963,385,0 chrXVI 105960 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;MQRankSum=-0.802;QD=21.07;ReadPosRankSum=1.712;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3687,373,0 chrXVI 105969 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.750;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=1.336;QD=21.70;ReadPosRankSum=1.628;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3603,340,0 chrXVI 106014 . A C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=20.91;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3576,358,0 chrXVI 106082 . C T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6064;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.17;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4304,427,0 chrXVI 106109 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4939;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.75;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4197,400,0 chrXVI 106351 . T C 6742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.824;DP=253;Dels=0.00;FS=7.962;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.244;QD=26.65;ReadPosRankSum=3.812;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:5,248:253:99:6742,670,0 chrXVI 106450 . G A 6905.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.7982;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.56;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6905,676,0 chrXVI 106600 . G A 7171.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=15.6513;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.56;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7171,706,0 chrXVI 106651 . T C 6995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=273;Dels=0.00;FS=6.066;HaplotypeScore=13.8926;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.579;QD=25.62;ReadPosRankSum=2.908;SB=-3.852e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:6995,691,0 chrXVI 106953 . C A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.80;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3276,316,0 chrXVI 106996 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6694;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.50;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3493,331,0 chrXVI 107103 . A T 3091 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.19;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3124,318,0 chrXVI 107325 . C T 6468.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=28.75;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6468,622,0 chrXVI 107437 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.27;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4422,454,0 chrXVI 107490 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=165;Dels=0.00;FS=8.162;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.912;QD=19.27;ReadPosRankSum=2.374;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3212,319,0 chrXVI 107496 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=233;Dels=0.00;FS=3.569;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.299;QD=12.72;ReadPosRankSum=1.687;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:2997,292,0 chrXVI 107538 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=22.9458;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=9.64;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:2675,264,0 chrXVI 107715 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.09;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4239,409,0 chrXVI 107736 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.37;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3417,334,0 chrXVI 107814 . T A 6372.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.19;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6372,619,0 chrXVI 108230 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.02;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2979,298,0 chrXVI 108300 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.02;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3819,399,0 chrXVI 108350 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.777;QD=24.38;ReadPosRankSum=1.705;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3129,313,0 chrXVI 108820 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3542,340,0 chrXVI 108924 . C T 4925.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=27.21;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4925,472,0 chrXVI 108940 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=25.47;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4992,472,0 chrXVI 108966 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.1111;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.23;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4224,400,0 chrXVI 109104 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.4665;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.77;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3527,349,0 chrXVI 110058 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3691,376,0 chrXVI 110256 . C A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3961,403,0 chrXVI 110310 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=2.978;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.673;QD=26.12;ReadPosRankSum=2.417;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3970,400,0 chrXVI 110345 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4231;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.94;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3987,385,0 chrXVI 110658 . C T 5593.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3215;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.28;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5593,541,0 chrXVI 110811 . C A 5927.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.2867;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.11;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5927,571,0 chrXVI 110925 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=196;Dels=0.00;FS=7.255;HaplotypeScore=9.5993;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.235;QD=24.12;ReadPosRankSum=2.386;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:2,191:196:99:4728,472,0 chrXVI 110946 . A G 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=201;Dels=0.00;FS=2.905;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.664;QD=24.08;ReadPosRankSum=2.388;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4841,481,0 chrXVI 111609 . T C 6357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=3.159;HaplotypeScore=9.9656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.368;QD=26.60;ReadPosRankSum=1.718;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:6357,631,0 chrXVI 111711 . A G 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=213;Dels=0.00;FS=3.029;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.898;QD=25.21;ReadPosRankSum=2.426;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:5369,535,0 chrXVI 111813 . C T 5840.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.5639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5840,550,0 chrXVI 111924 . C T 6190.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.7509;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.57;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:6190,601,0 chrXVI 111979 . T C 5102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.446;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.227;QD=25.38;ReadPosRankSum=1.715;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:5102,496,0 chrXVI 112440 . C T 6295.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.49;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6295,601,0 chrXVI 112935 . T C 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=205;Dels=0.00;FS=8.343;HaplotypeScore=12.7557;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.333;QD=23.48;ReadPosRankSum=2.341;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4814,487,0 chrXVI 113074 . G A 5732.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.9557;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=26.05;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5732,559,0 chrXVI 113838 . C T 5847.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5847,565,0 chrXVI 113880 . T C 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=239;Dels=0.00;FS=3.006;HaplotypeScore=22.3531;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.252;QD=26.63;ReadPosRankSum=2.429;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:6365,631,0 chrXVI 114050 . G A 6483.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=26.68;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6483,631,0 chrXVI 114105 . T A 7434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=24.3357;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.929;QD=26.93;ReadPosRankSum=1.694;SB=-4.000e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:7434,719,0 chrXVI 114171 . A G 5732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=225;Dels=0.00;FS=3.010;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.322;QD=25.48;ReadPosRankSum=2.362;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5732,589,0 chrXVI 114192 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=198;Dels=0.00;FS=5.924;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-1.631;QD=23.94;ReadPosRankSum=2.923;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4740,481,0 chrXVI 114225 . T A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=22.44;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4331,427,0 chrXVI 114231 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.99;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4051,406,0 chrXVI 114414 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=22.70;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3314,328,0 chrXVI 114421 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=22.77;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3324,325,0 chrXVI 114437 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=23.09;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3741,370,0 chrXVI 115128 . T C 2281 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=16.0429;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.01;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2314,228,0 chrXVI 115170 . G T 2574 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.49;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2607,261,0 chrXVI 115252 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.72;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3991,382,0 chrXVI 115323 . C A 5418.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.8443;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.09;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5418,526,0 chrXVI 116036 . C T 5220.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9598;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.34;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5220,502,0 chrXVI 116082 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.88;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4926,469,0 chrXVI 116203 . C A 3016 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.11;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3049,298,0 chrXVI 116214 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=142;Dels=0.00;FS=6.060;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.152;QD=15.57;ReadPosRankSum=2.906;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2244,240,0 chrXVI 116308 . G C 2768 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.66;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2801,288,0 chrXVI 116322 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.93;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2925,286,0 chrXVI 116373 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.731;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.340;QD=23.70;ReadPosRankSum=1.700;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2569,264,0 chrXVI 116448 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.00;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2103,210,0 chrXVI 116499 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.45;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1941,195,0 chrXVI 116689 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2921,292,0 chrXVI 116904 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.11;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3838,361,0 chrXVI 116947 . T G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.718;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.647;QD=23.96;ReadPosRankSum=1.711;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3978,400,0 chrXVI 117063 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=154;Dels=0.00;FS=4.970;HaplotypeScore=15.9670;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.077;QD=24.49;ReadPosRankSum=3.329;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:4,147:154:99:3772,382,0 chrXVI 117148 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=22.96;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3628,364,0 chrXVI 117201 . G A 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.582;DP=168;Dels=0.00;FS=4.453;HaplotypeScore=76.9671;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;MQRankSum=0.082;QD=7.77;ReadPosRankSum=-9.430;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:48,79:168:99:1338,129,0 chrXVI 117204 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=89.3368;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=6.47;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1075,105,0 chrXVI 117213 . G C 554.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.972;DP=179;Dels=0.00;FS=1.339;HaplotypeScore=47.7708;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;MQRankSum=-0.598;QD=3.10;ReadPosRankSum=-8.413;SB=-4.332e+02 GT:AD:DP:GQ:PL 1/1:132,47:179:16:587,16,0 chrXVI 117215 . A T 467.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.760;DP=182;Dels=0.00;FS=2.177;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;MQRankSum=-2.645;QD=2.57;ReadPosRankSum=-8.757;SB=-3.785e+02 GT:AD:DP:GQ:PL 1/1:137,45:182:2:497,2,0 chrXVI 117225 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=0.12;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:6:49,6,0 chrXVI 117230 . C T 55.97 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=0.36;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:9:88,9,0 chrXVI 117298 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=153;Dels=0.00;FS=2.858;HaplotypeScore=11.8697;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.334;QD=14.88;ReadPosRankSum=2.417;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:2309,234,0 chrXVI 117481 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=27.68;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4291,412,0 chrXVI 117985 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.34;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3599,343,0 chrXVI 118215 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3576,358,0 chrXVI 118252 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.81;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3381,337,0 chrXVI 118322 . G T 2573 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2606,261,0 chrXVI 119014 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0038;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.88;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3701,358,0 chrXVI 119106 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.57;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3391,322,0 chrXVI 119878 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3181,313,0 chrXVI 120319 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.26;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1635,159,0 chrXVI 120608 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.883;QD=26.44;ReadPosRankSum=1.710;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4098,397,0 chrXVI 120832 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=25.47;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3719,373,0 chrXVI 120838 . G C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=24.57;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3735,373,0 chrXVI 120844 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.93;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3689,355,0 chrXVI 121129 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.139;QD=22.54;ReadPosRankSum=1.694;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4079,412,0 chrXVI 121136 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.99;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4230,406,0 chrXVI 121193 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1201;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.71;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3627,367,0 chrXVI 121484 . A G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=3.078;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.027;QD=27.63;ReadPosRankSum=1.626;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1884,183,0 chrXVI 121557 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=27.23;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1966,186,0 chrXVI 121751 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.48;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2813,285,0 chrXVI 121974 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3369,337,0 chrXVI 122105 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.2711;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:4288,421,0 chrXVI 122198 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.142;QD=25.81;ReadPosRankSum=1.683;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3639,367,0 chrXVI 122473 . T C 6321.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.67;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:6321,625,0 chrXVI 122553 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.790;DP=208;Dels=0.00;FS=16.476;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.155;QD=24.14;ReadPosRankSum=3.752;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:5,202:208:99:5021,496,0 chrXVI 122567 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=2.997;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-1.578;QD=23.86;ReadPosRankSum=2.425;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4795,481,0 chrXVI 122768 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.51;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4081,412,0 chrXVI 122948 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.2356;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.51;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5329,538,0 chrXVI 123092 . G A 6115.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=17.0227;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.91;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:6115,595,0 chrXVI 123188 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0624;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.66;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4516,454,0 chrXVI 123251 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:5018,469,0 chrXVI 123366 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7848;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.59;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:4095,403,0 chrXVI 123705 . T C 5817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=234;Dels=0.00;FS=3.717;HaplotypeScore=14.1536;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.617;QD=24.86;ReadPosRankSum=1.687;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5817,574,0 chrXVI 123818 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=4.291;HaplotypeScore=19.3746;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.548;QD=23.33;ReadPosRankSum=1.695;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4433,448,0 chrXVI 124031 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2104;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=23.43;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3196,319,0 chrXVI 124049 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.44;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2813,271,0 chrXVI 124058 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.945;QD=21.13;ReadPosRankSum=1.706;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2822,279,0 chrXVI 124079 . A T 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.381;QD=19.06;ReadPosRankSum=1.657;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2663,256,0 chrXVI 124091 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5680;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.14;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2847,274,0 chrXVI 124217 . A G 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=183;Dels=0.00;FS=13.823;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.126;QD=25.50;ReadPosRankSum=2.951;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4667,475,0 chrXVI 124241 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.083;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.543;QD=24.34;ReadPosRankSum=1.712;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:4186,415,0 chrXVI 124331 . G A 5496.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8291;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.76;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5496,559,0 chrXVI 124436 . T C 6399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=253;Dels=0.00;FS=3.028;HaplotypeScore=16.0111;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.689;QD=25.29;ReadPosRankSum=2.410;SB=-3.589e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:6399,640,0 chrXVI 124589 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5178,499,0 chrXVI 124718 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4346;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.38;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3535,349,0 chrXVI 124850 . T C 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.221;QD=26.05;ReadPosRankSum=1.677;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4923,484,0 chrXVI 125144 . T A 6089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=224;Dels=0.00;FS=9.073;HaplotypeScore=13.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.234;QD=27.18;ReadPosRankSum=3.398;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:6089,583,0 chrXVI 125264 . G A 5655.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.6630;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.26;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5655,562,0 chrXVI 125270 . C T 5775.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.56;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5775,559,0 chrXVI 125654 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.99;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3107,313,0 chrXVI 125867 . G A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.67;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3985,400,0 chrXVI 125957 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.85;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4161,412,0 chrXVI 126095 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.712;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.189;QD=27.33;ReadPosRankSum=1.706;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3689,358,0 chrXVI 126582 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.66;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1250,123,0 chrXVI 126720 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.92;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3381,331,0 chrXVI 126808 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.50;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3784,364,0 chrXVI 126838 . A G 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.172;HaplotypeScore=12.9832;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.279;QD=23.15;ReadPosRankSum=1.714;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4468,460,0 chrXVI 127009 . C A 5894.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=27.80;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5894,565,0 chrXVI 127372 . G A 6903.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.29;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6903,661,0 chrXVI 127391 . G A 6000.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.21;SB=-3.551e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:6000,568,0 chrXVI 127855 . C T 6041.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.1752;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.26;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6041,583,0 chrXVI 127901 . C T 6193.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=20.7425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.07;SB=-3.588e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:6193,598,0 chrXVI 127985 . C T 4934.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4934,472,0 chrXVI 128020 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.056;QD=24.61;ReadPosRankSum=1.676;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4529,445,0 chrXVI 128690 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=5.113;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-1.229;QD=11.03;ReadPosRankSum=1.692;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:1931,192,0 chrXVI 128692 . A G 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=4.981;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;MQRankSum=-1.304;QD=11.38;ReadPosRankSum=1.691;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:1967,192,0 chrXVI 128710 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=10.35;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:2196,210,0 chrXVI 128722 . T C 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=216;Dels=0.00;FS=2.745;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;MQRankSum=-1.768;QD=11.37;ReadPosRankSum=2.313;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:2489,246,0 chrXVI 128735 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8040;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=13.56;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3165,304,0 chrXVI 129521 . G A 6116.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.55;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6116,592,0 chrXVI 132625 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.11;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1647,168,0 chrXVI 132681 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.09;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2507,237,0 chrXVI 132683 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.25;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2525,238,0 chrXVI 132693 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.02;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2387,231,0 chrXVI 132779 . C A 2331 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.28;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2364,234,0 chrXVI 132838 . A C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.721;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.327;QD=23.64;ReadPosRankSum=1.699;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2563,255,0 chrXVI 132855 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.301;QD=22.98;ReadPosRankSum=1.694;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2147,210,0 chrXVI 132909 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.88;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1770,177,0 chrXVI 132915 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.65;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1786,177,0 chrXVI 133186 . G A 7731.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=19.6814;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.51;SB=-4.102e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:7731,757,0 chrXVI 133388 . C G 6346.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.49;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6346,634,0 chrXVI 135960 . T C 1810 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=128;Dels=0.00;FS=35.527;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=43;MQRankSum=2.392;QD=14.14;ReadPosRankSum=2.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1843,180,0 chrXVI 138394 . C T 3024 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3057,295,0 chrXVI 138673 . T A 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.666;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.214;QD=25.02;ReadPosRankSum=1.667;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2710,262,0 chrXVI 141321 . A G 5294.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.95;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5294,517,0 chrXVI 145251 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=133;Dels=0.00;FS=3.031;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.492;QD=26.18;ReadPosRankSum=2.393;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3482,340,0 chrXVI 145367 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.18;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3253,319,0 chrXVI 145885 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3842,391,0 chrXVI 145943 . T C 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=186;Dels=0.00;FS=5.817;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.516;QD=26.18;ReadPosRankSum=2.940;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4869,478,0 chrXVI 146064 . C T 4154.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4154,418,0 chrXVI 146345 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.439;QD=25.89;ReadPosRankSum=1.673;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:3114,304,0 chrXVI 147108 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.629;QD=27.70;ReadPosRankSum=1.706;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3740,361,0 chrXVI 147209 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2049,204,0 chrXVI 150017 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2544,252,0 chrXVI 152472 . A G 2943 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.9456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2976,295,0 chrXVI 155634 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2645,267,0 chrXVI 156150 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2073,198,0 chrXVI 156476 . G C 3523.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.52;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3523,346,0 chrXVI 156514 . G T 3148 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3181,310,0 chrXVI 156560 . C G 2983 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3016,298,0 chrXVI 159409 . A G 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=200;Dels=0.00;FS=6.778;HaplotypeScore=12.0718;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.750;QD=25.25;ReadPosRankSum=0.949;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:5049,508,0 chrXVI 163733 . G T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3994,382,0 chrXVI 163842 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.77;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3530,343,0 chrXVI 165213 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.055;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.060;QD=26.10;ReadPosRankSum=1.697;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:5116,520,0 chrXVI 165244 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.877;HaplotypeScore=13.9520;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.590;QD=25.20;ReadPosRankSum=1.714;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4788,484,0 chrXVI 170236 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=15.3545;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.660;QD=23.68;ReadPosRankSum=1.010;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3410,340,0 chrXVI 170718 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.719;QD=24.66;ReadPosRankSum=1.634;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2647,267,0 chrXVI 171059 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4248,424,0 chrXVI 171982 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.53;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1480,144,0 chrXVI 172021 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.31;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1759,168,0 chrXVI 172126 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=25.25;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4393,436,0 chrXVI 172141 . C T 4846.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=25.37;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4846,469,0 chrXVI 173535 . T G 2035 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.95;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2068,204,0 chrXVI 173538 . C T 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.400;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.400;QD=21.51;ReadPosRankSum=-1.428;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1990,171,0 chrXVI 173703 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.466;QD=24.23;ReadPosRankSum=1.656;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2262,228,0 chrXVI 173708 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=23.15;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2325,228,0 chrXVI 173979 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=27.01;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2545,247,0 chrXVI 174059 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.16;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3002,298,0 chrXVI 174782 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=108;Dels=0.00;FS=2.582;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.178;QD=26.01;ReadPosRankSum=2.935;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2842,286,0 chrXVI 175312 . G A 5961.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1854;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.47;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5961,577,0 chrXVI 176477 . T A 4462.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.8971;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.88;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4462,436,0 chrXVI 177590 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.46;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2961,283,0 chrXVI 177989 . T A 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=98;Dels=0.00;FS=10.908;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.309;QD=23.19;ReadPosRankSum=2.805;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2306,222,0 chrXVI 178167 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2614,256,0 chrXVI 179596 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=187;Dels=0.00;FS=3.013;HaplotypeScore=16.6308;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.412;QD=25.52;ReadPosRankSum=2.410;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4772,466,0 chrXVI 180404 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.369;QD=26.50;ReadPosRankSum=1.699;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2816,285,0 chrXVI 180436 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=122;Dels=0.00;FS=10.429;HaplotypeScore=9.0293;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.432;QD=25.41;ReadPosRankSum=2.924;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,116:122:99:3133,307,0 chrXVI 182927 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.8617;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.00;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1275,123,0 chrXVI 182943 . C G 986 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.72;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1019,102,0 chrXVI 182956 . T C 1444 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.56;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1477,147,0 chrXVI 183111 . T C 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.286;QD=24.71;ReadPosRankSum=1.621;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:81:799,81,0 chrXVI 183385 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=6.100;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.156;QD=23.78;ReadPosRankSum=2.405;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3923,397,0 chrXVI 183482 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.270;DP=150;Dels=0.00;FS=3.248;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.647;QD=24.54;ReadPosRankSum=0.831;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3681,343,0 chrXVI 187861 . C G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3559,358,0 chrXVI 188889 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=23.76;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2243,222,0 chrXVI 189738 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=28.28;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2352,226,0 chrXVI 190807 . G C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.76;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3692,364,0 chrXVI 191331 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1850,180,0 chrXVI 191944 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3616,372,0 chrXVI 192874 . T C 160.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.55;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:193,21,0 chrXVI 194031 . C A 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DP=55;Dels=0.00;FS=3.901;HaplotypeScore=14.4120;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-0.160;QD=1.29;ReadPosRankSum=-3.212;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:34,21:55:99:101,0,561 chrXVI 194152 . C T 4807.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.41;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4807,451,0 chrXVI 194671 . T G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DP=127;Dels=0.00;FS=138.101;HaplotypeScore=25.2588;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-0.320;QD=0.57;ReadPosRankSum=-0.169;SB=-5.833e-03 GT:AD:DP:GQ:PL 0/1:80,45:127:99:103,0,1308 chrXVI 194832 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=167;Dels=0.00;FS=9.191;HaplotypeScore=12.2661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.628;QD=24.17;ReadPosRankSum=2.945;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:4036,403,0 chrXVI 195879 . C T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.69;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4057,403,0 chrXVI 199138 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.02;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3877,388,0 chrXVI 199543 . C G 3113 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.79;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3146,319,0 chrXVI 199576 . T A 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.544;QD=26.59;ReadPosRankSum=1.633;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2878,297,0 chrXVI 199717 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=26.67;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5041,490,0 chrXVI 199801 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.1581;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.133;QD=24.48;ReadPosRankSum=1.694;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4479,454,0 chrXVI 199875 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.49;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4252,394,0 chrXVI 199884 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.64;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4233,427,0 chrXVI 199941 . C G 4836.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.30;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4836,469,0 chrXVI 200253 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=26.27;ReadPosRankSum=1.688;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4151,406,0 chrXVI 200431 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4447,433,0 chrXVI 201616 . G A 6849.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.84;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6849,655,0 chrXVI 201697 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.268;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.679;QD=23.06;ReadPosRankSum=1.712;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3966,388,0 chrXVI 201985 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.705;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4984;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.380;QD=24.15;ReadPosRankSum=-0.646;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2883,268,0 chrXVI 202708 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=26.72;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3313,331,0 chrXVI 202791 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=26.04;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2741,265,0 chrXVI 202808 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=27.37;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3126,295,0 chrXVI 202889 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2136;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.974;QD=24.04;ReadPosRankSum=1.705;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3134,313,0 chrXVI 202900 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=25.07;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3067,289,0 chrXVI 202983 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2331,237,0 chrXVI 205023 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2177,219,0 chrXVI 206288 . T C 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=106;Dels=0.00;FS=6.070;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.610;QD=25.08;ReadPosRankSum=2.801;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2691,268,0 chrXVI 207364 . C T 6092.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.3723;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6092,604,0 chrXVI 207437 . T A 8652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=312;Dels=0.00;FS=2.876;HaplotypeScore=17.7966;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.617;QD=27.73;ReadPosRankSum=2.387;SB=-3.719e+03 GT:AD:DP:GQ:PL 1/1:2,310:312:99:8652,836,0 chrXVI 208747 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.52;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3760,361,0 chrXVI 210433 . A G 2431 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.62;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2464,246,0 chrXVI 210832 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2232,222,0 chrXVI 211078 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2853,277,0 chrXVI 211190 . T A 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.166;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.754;QD=26.56;ReadPosRankSum=1.691;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2291,225,0 chrXVI 211386 . A T 1611 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=25.17;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1644,159,0 chrXVI 211577 . T A 198.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=18;Dels=0.00;FS=6.284;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=1;MQRankSum=1.531;QD=11.00;ReadPosRankSum=-1.327;SB=-8.504e+01 GT:AD:DP:GQ:PL 1/1:2,16:18:24:231,24,0 chrXVI 212704 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8313;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.97;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3042,307,0 chrXVI 214358 . A C 2762 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2795,279,0 chrXVI 214724 . C T 5902.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.1305;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.49;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5902,574,0 chrXVI 215183 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.521;QD=27.28;ReadPosRankSum=1.684;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3929,379,0 chrXVI 215587 . G C 2133 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.09;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2166,210,0 chrXVI 215973 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.02;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4007,382,0 chrXVI 218021 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=149;Dels=0.00;FS=6.873;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.619;QD=24.11;ReadPosRankSum=2.314;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3592,367,0 chrXVI 220471 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.32;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2954,289,0 chrXVI 220856 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.71;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2064,195,0 chrXVI 220879 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.887;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.838;QD=24.36;ReadPosRankSum=1.695;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2323,228,0 chrXVI 222598 . G A 5390.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.07;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:5390,517,0 chrXVI 223881 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.67;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4570,433,0 chrXVI 225206 . T C 5832.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5832,574,0 chrXVI 226070 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=92;Dels=0.00;FS=3.745;HaplotypeScore=9.0703;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.347;QD=24.57;ReadPosRankSum=1.694;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2293,231,0 chrXVI 226571 . C A 5704.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.77;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5704,538,0 chrXVI 226573 . A C 5322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.402;QD=22.27;ReadPosRankSum=1.703;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5322,529,0 chrXVI 227828 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=3.034;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.686;QD=25.05;ReadPosRankSum=2.343;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3457,357,0 chrXVI 228020 . A C 2829 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.81;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2862,283,0 chrXVI 228950 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3423,328,0 chrXVI 230852 . A T 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.437;QD=24.90;ReadPosRankSum=1.704;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3120,301,0 chrXVI 231052 . T C 2945 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.78;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2978,292,0 chrXVI 231288 . C G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4050,391,0 chrXVI 231390 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.55;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3876,367,0 chrXVI 232116 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.60;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3284,331,0 chrXVI 232619 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.47;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4367,415,0 chrXVI 232790 . G C 4102.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:4102,415,0 chrXVI 233007 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3247,325,0 chrXVI 233841 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.32;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3764,364,0 chrXVI 234054 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.8184;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.89;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:3054,307,0 chrXVI 234100 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=24.41;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3466,349,0 chrXVI 234114 . C G 3380.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.47;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3380,337,0 chrXVI 234171 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=20.98;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2131,210,0 chrXVI 234188 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.32;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1952,189,0 chrXVI 234189 . C A 1920 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.82;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1953,192,0 chrXVI 234333 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=21.55;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2468,237,0 chrXVI 234336 . A T 2191 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=20.29;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2224,228,0 chrXVI 234405 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=24.59;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3254,322,0 chrXVI 234527 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.966;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.004;QD=24.48;ReadPosRankSum=1.710;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3843,373,0 chrXVI 234528 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=160;Dels=0.00;FS=5.461;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.236;QD=23.59;ReadPosRankSum=2.905;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3774,379,0 chrXVI 234591 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=150;Dels=0.00;FS=6.907;HaplotypeScore=10.5165;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.254;QD=21.86;ReadPosRankSum=2.319;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3279,334,0 chrXVI 234789 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.61;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3470,340,0 chrXVI 235149 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=8.372;HaplotypeScore=8.2258;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.699;QD=25.95;ReadPosRankSum=2.399;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3789,385,0 chrXVI 235565 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3526,346,0 chrXVI 236129 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.17;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2694,262,0 chrXVI 236142 . C A 2751 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.31;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2784,268,0 chrXVI 236348 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5662;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=27.04;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4354,430,0 chrXVI 236471 . C A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.27;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3940,370,0 chrXVI 236844 . T A 5104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.601;QD=27.59;ReadPosRankSum=1.695;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:5104,481,0 chrXVI 236868 . A T 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.253;HaplotypeScore=7.4292;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.245;QD=26.77;ReadPosRankSum=1.638;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4925,475,0 chrXVI 236973 . A G 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=190;Dels=0.00;FS=2.574;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.048;QD=26.78;ReadPosRankSum=2.963;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:5088,502,0 chrXVI 237068 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7696;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=27.22;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4300,409,0 chrXVI 237218 . C A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.19;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3652,358,0 chrXVI 237235 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=25.76;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3658,352,0 chrXVI 237288 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.362;QD=22.71;ReadPosRankSum=1.706;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3076,304,0 chrXVI 237294 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.22;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2988,289,0 chrXVI 237332 . A G 2566 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.75;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2599,258,0 chrXVI 237340 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.55;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2511,249,0 chrXVI 237387 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.39;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2862,277,0 chrXVI 237695 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.41;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2645,267,0 chrXVI 237703 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=5.830;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.595;QD=20.93;ReadPosRankSum=0.181;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2901,294,0 chrXVI 237745 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.285;QD=22.44;ReadPosRankSum=2.401;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3389,337,0 chrXVI 237880 . A G 5050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.388;QD=27.90;ReadPosRankSum=1.713;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:5050,493,0 chrXVI 238111 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.495;QD=24.84;ReadPosRankSum=1.707;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3478,346,0 chrXVI 238158 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.323;QD=26.62;ReadPosRankSum=1.703;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:3227,313,0 chrXVI 238578 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.04;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2950,280,0 chrXVI 238837 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.85;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3264,313,0 chrXVI 238845 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=3.041;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.241;QD=23.86;ReadPosRankSum=2.414;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3292,334,0 chrXVI 238977 . T G 1724 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1757,174,0 chrXVI 239536 . T G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=3.228;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.223;QD=24.81;ReadPosRankSum=1.708;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3597,358,0 chrXVI 239629 . A T 3061 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.69;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3094,301,0 chrXVI 240215 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.82;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2253,216,0 chrXVI 240217 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.94;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2211,213,0 chrXVI 240583 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4316,418,0 chrXVI 240681 . C G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.24;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4314,436,0 chrXVI 240946 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.336;QD=25.46;ReadPosRankSum=1.712;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4455,448,0 chrXVI 241053 . G C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.28;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3564,355,0 chrXVI 241363 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.8963;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=26.37;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4878,475,0 chrXVI 241467 . C T 4739.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9499;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.76;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4739,469,0 chrXVI 241650 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=168;Dels=0.01;FS=7.684;HaplotypeScore=18.2223;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.052;QD=24.40;ReadPosRankSum=2.420;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:4100,409,0 chrXVI 241683 . C A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7609;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=25.37;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4110,397,0 chrXVI 241702 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.306;QD=24.30;ReadPosRankSum=1.687;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3742,361,0 chrXVI 241801 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.489;QD=24.16;ReadPosRankSum=1.597;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3150,307,0 chrXVI 241902 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=151.1708;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.51;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,186:191:99:4108,397,0 chrXVI 241984 . T A 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9225;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.499;QD=27.69;ReadPosRankSum=1.699;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5759,550,0 chrXVI 242019 . C G 5435.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.52;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5435,547,0 chrXVI 242191 . A G 6416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=27.6063;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.832;QD=24.97;ReadPosRankSum=1.718;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:1,254:257:99:6416,640,0 chrXVI 242716 . A T 5802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.827;QD=26.14;ReadPosRankSum=1.670;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5802,571,0 chrXVI 242761 . G A 5834.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.74;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5834,553,0 chrXVI 242835 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=126;Dels=0.00;FS=3.823;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=-1.535;QD=22.16;ReadPosRankSum=1.704;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2825,280,0 chrXVI 243021 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2658,265,0 chrXVI 243265 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3529,346,0 chrXVI 243433 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.143;QD=25.58;ReadPosRankSum=1.709;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3913,385,0 chrXVI 244785 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3721,367,0 chrXVI 245264 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.27;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4282,409,0 chrXVI 245744 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.256;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.047;QD=26.04;ReadPosRankSum=1.694;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2403,240,0 chrXVI 245982 . A T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.59;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3776,358,0 chrXVI 247153 . C A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4388,415,0 chrXVI 248123 . C T 5090.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.83;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5090,493,0 chrXVI 248288 . C T 6087.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=21.0522;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.79;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6087,586,0 chrXVI 248580 . A C 5861.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5861,574,0 chrXVI 249407 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.575;QD=26.44;ReadPosRankSum=1.642;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:4124,415,0 chrXVI 252117 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.74;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:3168,298,0 chrXVI 252372 . T A 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.708;QD=21.82;ReadPosRankSum=1.708;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3175,304,0 chrXVI 252434 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.424;QD=26.42;ReadPosRankSum=1.708;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3858,373,0 chrXVI 252501 . A T 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=155;Dels=0.00;FS=2.998;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.054;QD=24.45;ReadPosRankSum=2.370;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3790,376,0 chrXVI 252618 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4181,406,0 chrXVI 253090 . G A 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=185;Dels=0.00;FS=2.887;HaplotypeScore=14.3385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.821;QD=26.31;ReadPosRankSum=2.410;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4867,451,0 chrXVI 253375 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.38;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3040,292,0 chrXVI 253892 . T C 5798.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.6359;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.88;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5798,571,0 chrXVI 254117 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4269,421,0 chrXVI 254530 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=27.21;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3456,334,0 chrXVI 254741 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.18;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3231,316,0 chrXVI 254778 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.04;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2762,265,0 chrXVI 254813 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.11;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2540,255,0 chrXVI 254822 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.11;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2720,259,0 chrXVI 254974 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=4.061;HaplotypeScore=10.3919;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.346;QD=26.80;ReadPosRankSum=1.706;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3618,358,0 chrXVI 255112 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4511,433,0 chrXVI 255750 . G C 4385.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4385,430,0 chrXVI 255854 . T C 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.043;QD=26.41;ReadPosRankSum=1.693;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4675,463,0 chrXVI 256359 . T G 2163 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.03;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2196,222,0 chrXVI 256510 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=121;Dels=0.00;FS=5.743;HaplotypeScore=9.7512;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.225;QD=25.47;ReadPosRankSum=2.942;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:3115,307,0 chrXVI 257678 . T G 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=2.666;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.365;QD=25.48;ReadPosRankSum=2.367;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4611,457,0 chrXVI 257972 . C T 8338.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=15.8924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-4.775e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:8338,809,0 chrXVI 259894 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.6000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.66;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4636,463,0 chrXVI 260548 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.3793;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.47;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4483,424,0 chrXVI 261137 . C G 1483 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1516,153,0 chrXVI 262228 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.4761;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.37;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4297,409,0 chrXVI 262452 . T G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3568,364,0 chrXVI 262948 . T C 5258.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.8427;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.29;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:5258,517,0 chrXVI 263263 . A G 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=201;Dels=0.00;FS=3.644;HaplotypeScore=14.4216;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.140;QD=25.11;ReadPosRankSum=1.680;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:5048,505,0 chrXVI 263733 . A T 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.732;QD=25.79;ReadPosRankSum=1.712;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4487,430,0 chrXVI 264524 . A C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=3.148;HaplotypeScore=19.0169;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.794;QD=23.55;ReadPosRankSum=1.696;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4592,442,0 chrXVI 264882 . T A 2339 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.52;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2372,231,0 chrXVI 264964 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.69;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3758,358,0 chrXVI 265153 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.13;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3267,313,0 chrXVI 266023 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.92;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4802,457,0 chrXVI 266858 . C G 4651.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.97;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4651,469,0 chrXVI 267269 . A T 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.9210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.825;QD=26.42;ReadPosRankSum=0.128;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:5311,486,0 chrXVI 267899 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3496,331,0 chrXVI 268208 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.82;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3198,304,0 chrXVI 269012 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3851,373,0 chrXVI 269345 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.44;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3540,352,0 chrXVI 269803 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3846,370,0 chrXVI 270158 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3350,334,0 chrXVI 270296 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4075,388,0 chrXVI 270630 . T C 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=190;Dels=0.00;FS=2.563;HaplotypeScore=16.8511;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.059;QD=25.65;ReadPosRankSum=2.931;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4874,469,0 chrXVI 270785 . T C 4819.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7874;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.07;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4819,466,0 chrXVI 270942 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2523,244,0 chrXVI 270991 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.89;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:1063,105,0 chrXVI 271044 . A G 362 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=12.93;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,25:28:39:395,39,0 chrXVI 271054 . T A 521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.096;QD=13.36;ReadPosRankSum=2.197;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:54:554,54,0 chrXVI 271083 . T A 903 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.89;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:936,93,0 chrXVI 271089 . A T 982 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=13.45;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1015,99,0 chrXVI 271095 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=15.16;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1276,123,0 chrXVI 271460 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4478,424,0 chrXVI 271555 . G A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.99;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5048,478,0 chrXVI 271666 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4311,412,0 chrXVI 272321 . T C 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=125;Dels=0.00;FS=3.155;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.051;QD=26.54;ReadPosRankSum=1.704;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:3318,334,0 chrXVI 272587 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.396;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.011;QD=23.47;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3591,358,0 chrXVI 272608 . T C 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=170;Dels=0.00;FS=3.034;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.168;QD=23.76;ReadPosRankSum=2.406;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4040,400,0 chrXVI 272771 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.41;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3481,354,0 chrXVI 272942 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.46;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2699,271,0 chrXVI 273874 . T C 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=84;Dels=0.00;FS=2.616;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.655;QD=22.04;ReadPosRankSum=2.914;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1884,183,0 chrXVI 273875 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=85;Dels=0.00;FS=2.694;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.362;QD=22.36;ReadPosRankSum=2.363;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1934,186,0 chrXVI 273953 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=122;Dels=0.00;FS=7.800;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.575;QD=24.56;ReadPosRankSum=2.389;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:3029,292,0 chrXVI 274407 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.15;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3909,370,0 chrXVI 274932 . A C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.768;DP=178;Dels=0.00;FS=3.110;HaplotypeScore=10.4966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.220;QD=24.87;ReadPosRankSum=-0.020;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4426,410,0 chrXVI 275246 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.28;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3337,334,0 chrXVI 275387 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.98;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3536,343,0 chrXVI 275818 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9407;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.86;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2903,280,0 chrXVI 275836 . C A 2951 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=26.59;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2984,283,0 chrXVI 275926 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=95;Dels=0.00;FS=3.057;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.443;QD=25.94;ReadPosRankSum=2.397;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,91:95:99:2497,249,0 chrXVI 276463 . G T 2886 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.77;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2919,283,0 chrXVI 276934 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.98;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3665,355,0 chrXVI 277086 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2687,262,0 chrXVI 277230 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.587;QD=23.19;ReadPosRankSum=1.703;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2793,282,0 chrXVI 277302 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.050;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.329;QD=25.82;ReadPosRankSum=2.401;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2667,267,0 chrXVI 277437 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.35;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2444,246,0 chrXVI 277547 . A G 2813 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.50;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2846,288,0 chrXVI 277562 . G T 3066 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.73;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3099,298,0 chrXVI 277807 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=29.08;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2534,241,0 chrXVI 278223 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=2.981;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=27.24;ReadPosRankSum=2.362;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:3111,318,0 chrXVI 278867 . A C 4865.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=26.44;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4865,475,0 chrXVI 278872 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=189;Dels=0.00;FS=8.063;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.696;QD=24.83;ReadPosRankSum=2.424;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4692,466,0 chrXVI 279235 . A G 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.056;QD=26.11;ReadPosRankSum=1.695;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4857,484,0 chrXVI 279259 . G C 4492.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.9736;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.52;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4492,457,0 chrXVI 279412 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.574;QD=25.32;ReadPosRankSum=1.687;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3900,388,0 chrXVI 279637 . A G 2747 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2780,277,0 chrXVI 279722 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=24.03;ReadPosRankSum=1.693;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:2196,219,0 chrXVI 279843 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.78;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3193,307,0 chrXVI 280007 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=4.794;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.806;QD=26.88;ReadPosRankSum=1.714;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:5027,499,0 chrXVI 280422 . A G 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=142;Dels=0.00;FS=8.226;HaplotypeScore=14.1854;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.532;QD=25.31;ReadPosRankSum=2.397;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3594,355,0 chrXVI 280470 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.85;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3571,340,0 chrXVI 280623 . C A 5433.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=27.30;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5433,529,0 chrXVI 280682 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.52;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4540,442,0 chrXVI 280692 . T G 4435.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.9420;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.10;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4435,442,0 chrXVI 280860 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=23.74;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3680,367,0 chrXVI 280872 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=24.79;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3570,352,0 chrXVI 281659 . T C 3072 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=25.39;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3105,307,0 chrXVI 281703 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.87;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,265,0 chrXVI 281721 . T G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.3182;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.482;QD=23.62;ReadPosRankSum=1.706;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3175,319,0 chrXVI 281838 . C A 5611.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.74;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5611,547,0 chrXVI 281885 . G T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=24.50;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4899,460,0 chrXVI 281895 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.49;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3955,397,0 chrXVI 281956 . C A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.20;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4306,421,0 chrXVI 281975 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.06;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5087,475,0 chrXVI 282264 . T C 2313 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2346,237,0 chrXVI 282326 . C G 1969 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:2002,198,0 chrXVI 282360 . A G 2012 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.13;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2045,201,0 chrXVI 282453 . T G 2385 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.41;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2418,240,0 chrXVI 282491 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1864,189,0 chrXVI 283162 . A T 1374 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=28.04;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1407,135,0 chrXVI 283200 . G A 894 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:90:927,90,0 chrXVI 283424 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2542,258,0 chrXVI 288425 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1967;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.38;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4490,430,0 chrXVI 289053 . G T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.14;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3369,328,0 chrXVI 289247 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2582,247,0 chrXVI 290458 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.77;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3638,349,0 chrXVI 291046 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.14;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2440,246,0 chrXVI 291410 . G C 3151 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.70;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:3184,310,0 chrXVI 291821 . A C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.474;QD=25.70;ReadPosRankSum=1.680;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3469,340,0 chrXVI 292699 . C G 2013 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.49;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2046,201,0 chrXVI 293975 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.045;QD=26.07;ReadPosRankSum=1.665;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:4041,400,0 chrXVI 294485 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3633,361,0 chrXVI 294624 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=129;Dels=0.00;FS=5.896;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.211;QD=24.76;ReadPosRankSum=2.914;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3227,316,0 chrXVI 294728 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.242;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.327;QD=25.32;ReadPosRankSum=1.710;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3950,403,0 chrXVI 295177 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.4587;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.44;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5214,496,0 chrXVI 295256 . A G 6090.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.86;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:6090,613,0 chrXVI 295944 . A G 6161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=14.4155;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.057;QD=22.40;ReadPosRankSum=1.707;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:6161,607,0 chrXVI 296306 . A G 6395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=3.766;HaplotypeScore=13.6494;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.354;QD=26.76;ReadPosRankSum=1.688;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:6395,619,0 chrXVI 296884 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.0962;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.593;QD=21.47;ReadPosRankSum=-1.546;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3253,319,0 chrXVI 297633 . G T 5144.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=27.66;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5144,490,0 chrXVI 297648 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=187;Dels=0.00;FS=14.437;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.783;QD=24.37;ReadPosRankSum=3.346;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:4,180:187:99:4557,448,0 chrXVI 298468 . T C 584 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=25.39;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:617,63,0 chrXVI 298471 . G T 630 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=26.25;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:663,63,0 chrXVI 298476 . C A 612 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=25.50;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:645,63,0 chrXVI 298503 . A T 116.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=11;Dels=0.00;FS=4.393;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-1.663;QD=10.57;ReadPosRankSum=0.000;SB=2.91 GT:AD:DP:GQ:PL 1/1:4,7:11:15:149,15,0 chrXVI 298521 . G A 134.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=7.06;SB=-6.811e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:167,18,0 chrXVI 299299 . T A 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=2.699;HaplotypeScore=9.6177;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.975;QD=27.16;ReadPosRankSum=2.406;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4645,439,0 chrXVI 299735 . A T 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.415;QD=27.79;ReadPosRankSum=1.706;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3641,358,0 chrXVI 299805 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9407;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=28.13;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4163,400,0 chrXVI 300401 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=179;Dels=0.00;FS=6.557;HaplotypeScore=14.9628;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.998;QD=23.13;ReadPosRankSum=2.380;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:4140,418,0 chrXVI 300478 . G C 4218.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.52;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4218,444,0 chrXVI 300640 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.156;HaplotypeScore=13.7828;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.599;QD=25.14;ReadPosRankSum=1.694;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4625,469,0 chrXVI 301260 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.604;HaplotypeScore=10.2400;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.668;QD=24.55;ReadPosRankSum=1.709;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3756,367,0 chrXVI 301308 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.76;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3128,301,0 chrXVI 301341 . T C 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.550;QD=23.27;ReadPosRankSum=1.650;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2965,289,0 chrXVI 301444 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.064;QD=26.45;ReadPosRankSum=1.706;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3571,355,0 chrXVI 301572 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.3665;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.66;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3893,397,0 chrXVI 301723 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:4048,382,0 chrXVI 301952 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.342;QD=26.63;ReadPosRankSum=1.711;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4447,439,0 chrXVI 302336 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.92;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3688,364,0 chrXVI 302738 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1872,186,0 chrXVI 303036 . A C 1769 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.23;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1802,183,0 chrXVI 303354 . C T 7480.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.93;SB=-3.896e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:7480,725,0 chrXVI 303378 . C T 7795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;DP=308;Dels=0.00;FS=3.039;HaplotypeScore=14.0220;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.608;QD=25.31;ReadPosRankSum=1.664;SB=-4.594e+03 GT:AD:DP:GQ:PL 1/1:1,305:308:99:7795,740,0 chrXVI 303450 . G A 7266.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.86;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:7266,724,0 chrXVI 303780 . T C 4885.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.05;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4885,487,0 chrXVI 303807 . C T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=27.43;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:5267,502,0 chrXVI 303834 . C A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8318;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.84;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4600,442,0 chrXVI 304420 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.10;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3865,376,0 chrXVI 304561 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=142;Dels=0.00;FS=3.042;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.413;QD=26.08;ReadPosRankSum=2.379;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3703,358,0 chrXVI 304635 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4267,412,0 chrXVI 304734 . A T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=11.8007;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.90;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4324,415,0 chrXVI 304831 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.45;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4268,415,0 chrXVI 304895 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=5.936;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.392;QD=19.50;ReadPosRankSum=1.698;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2022,195,0 chrXVI 304957 . T G 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=9.070;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.843;QD=20.02;ReadPosRankSum=1.609;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2295,222,0 chrXVI 304984 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-2.187;QD=23.81;ReadPosRankSum=0.753;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2533,222,0 chrXVI 305273 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.99;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2332,225,0 chrXVI 305812 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.1806;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.00;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4725,454,0 chrXVI 306198 . A T 2781 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.75;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2814,271,0 chrXVI 306302 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.69;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3597,355,0 chrXVI 306430 . A G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;MQRankSum=0.569;QD=27.16;ReadPosRankSum=2.397;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2559,250,0 chrXVI 306698 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.68;ReadPosRankSum=1.606;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2884,291,0 chrXVI 306860 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4049,412,0 chrXVI 307244 . T A 6238.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.46;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:6238,592,0 chrXVI 307685 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=19.3726;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.28;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4450,427,0 chrXVI 307847 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4377,436,0 chrXVI 308140 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.282;QD=25.77;ReadPosRankSum=1.654;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4587,451,0 chrXVI 308239 . G A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.8840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4563,442,0 chrXVI 308420 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.969;QD=24.70;ReadPosRankSum=1.673;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2972,298,0 chrXVI 308487 . A T 2908 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.73;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2941,289,0 chrXVI 308554 . T A 2122 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.07;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2155,222,0 chrXVI 308578 . T G 1766 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.24;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1799,183,0 chrXVI 308656 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.54;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1318,132,0 chrXVI 308669 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.18;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1292,126,0 chrXVI 308781 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=16.32;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1241,126,0 chrXVI 308785 . G T 1400 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.67;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1433,141,0 chrXVI 309089 . G T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.7187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4605,451,0 chrXVI 309206 . G T 2888 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.4896;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.24;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2921,292,0 chrXVI 309383 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.81;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3796,364,0 chrXVI 309587 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.93;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3531,349,0 chrXVI 309787 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.2394;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.726;QD=23.13;ReadPosRankSum=1.710;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3609,367,0 chrXVI 309899 . T A 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.265;QD=28.28;ReadPosRankSum=1.651;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4807,454,0 chrXVI 309958 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=2.921;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.082;QD=23.65;ReadPosRankSum=2.375;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3902,388,0 chrXVI 310009 . T G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.21;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3970,400,0 chrXVI 310045 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=26.20;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4061,403,0 chrXVI 310074 . T G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.18;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3675,373,0 chrXVI 310159 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4486,439,0 chrXVI 310203 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.16;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3976,403,0 chrXVI 310490 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.54;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3767,361,0 chrXVI 310795 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.51;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4534,442,0 chrXVI 310918 . T C 5488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=222;Dels=0.00;FS=2.914;HaplotypeScore=12.5938;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.441;QD=24.72;ReadPosRankSum=2.271;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:5488,538,0 chrXVI 310970 . A C 6396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=247;Dels=0.00;FS=3.553;HaplotypeScore=10.4625;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.353;QD=25.89;ReadPosRankSum=1.690;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:6396,625,0 chrXVI 311025 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=22.1823;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.031;QD=25.18;ReadPosRankSum=2.413;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:5086,505,0 chrXVI 311060 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.38;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4960,481,0 chrXVI 311427 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.77;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2980,298,0 chrXVI 311442 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.38;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2813,282,0 chrXVI 311496 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.388;QD=23.21;ReadPosRankSum=1.708;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3272,325,0 chrXVI 311955 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.97;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2406,240,0 chrXVI 312263 . G A 4197.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.61;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:4197,406,0 chrXVI 312405 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3868,391,0 chrXVI 312657 . A T 5033.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.0946;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.21;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5033,478,0 chrXVI 312873 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.31;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1556,159,0 chrXVI 312892 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.51;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1316,129,0 chrXVI 313045 . A G 1576 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=29.74;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1609,156,0 chrXVI 313228 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.68;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3155,307,0 chrXVI 313357 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=27.31;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3387,316,0 chrXVI 313377 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=26.72;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3527,337,0 chrXVI 313494 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.13;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3345,322,0 chrXVI 313832 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.30;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3039,292,0 chrXVI 313834 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=130;Dels=0.00;FS=6.193;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.931;QD=22.76;ReadPosRankSum=2.334;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2992,301,0 chrXVI 313954 . C G 5041.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:5041,508,0 chrXVI 314083 . C G 3805.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.20;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3805,373,0 chrXVI 314443 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3539,346,0 chrXVI 314479 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.71;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3904,376,0 chrXVI 315182 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=2.918;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.138;QD=26.93;ReadPosRankSum=2.419;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:4443,433,0 chrXVI 315397 . G A 5805.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.57;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5805,577,0 chrXVI 316580 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.157;QD=25.19;ReadPosRankSum=1.701;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2804,274,0 chrXVI 316765 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.66;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3464,340,0 chrXVI 316953 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.73;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4490,451,0 chrXVI 317528 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.463;QD=22.80;ReadPosRankSum=1.694;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2085,207,0 chrXVI 317602 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=25.76;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1836,177,0 chrXVI 317619 . G C 1525 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=26.29;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1558,153,0 chrXVI 317622 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=27.67;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1638,159,0 chrXVI 317677 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=27.44;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1789,171,0 chrXVI 318016 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.95;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3817,388,0 chrXVI 318049 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=28.88;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:4274,403,0 chrXVI 318072 . T G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.063;QD=28.02;ReadPosRankSum=1.708;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4063,394,0 chrXVI 318410 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.06;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3260,313,0 chrXVI 318508 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.76;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3217,307,0 chrXVI 318634 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=26.66;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3733,364,0 chrXVI 319664 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.07;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3142,319,0 chrXVI 319826 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.72;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2925,294,0 chrXVI 319901 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1284;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.48;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3427,340,0 chrXVI 320279 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.839;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.541;QD=25.70;ReadPosRankSum=2.381;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3675,376,0 chrXVI 320399 . C A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4847,475,0 chrXVI 324393 . G C 2610 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2643,262,0 chrXVI 325231 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=132;Dels=0.00;FS=2.589;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=25.48;ReadPosRankSum=2.884;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:3364,334,0 chrXVI 328317 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.15;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4926,469,0 chrXVI 329374 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.438;QD=26.84;ReadPosRankSum=1.694;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2475,243,0 chrXVI 329486 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.945;QD=26.51;ReadPosRankSum=1.653;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2366,234,0 chrXVI 330238 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.244;QD=22.28;ReadPosRankSum=1.709;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3387,340,0 chrXVI 330424 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.397;QD=23.98;ReadPosRankSum=1.660;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2383,234,0 chrXVI 333067 . G C 2102 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.63;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2135,213,0 chrXVI 333616 . T C 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=25.80;ReadPosRankSum=1.667;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4154,406,0 chrXVI 333767 . T G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.617;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.742;QD=26.41;ReadPosRankSum=1.668;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:4305,418,0 chrXVI 334207 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.274;QD=24.69;ReadPosRankSum=1.681;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3358,328,0 chrXVI 334494 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.69;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2574,255,0 chrXVI 335267 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3847,370,0 chrXVI 337162 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.226;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.132;QD=26.47;ReadPosRankSum=1.678;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3388,337,0 chrXVI 338332 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.57;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3203,313,0 chrXVI 338426 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=140;Dels=0.00;FS=2.415;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.321;QD=20.31;ReadPosRankSum=3.320;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:4,135:140:99:2876,286,0 chrXVI 338429 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9217;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.921;QD=19.01;ReadPosRankSum=1.708;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2713,268,0 chrXVI 338640 . A T 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.810;QD=25.72;ReadPosRankSum=1.712;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4346,412,0 chrXVI 338828 . T C 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.837;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.138;QD=23.81;ReadPosRankSum=2.400;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2390,240,0 chrXVI 338953 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.854;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.488;QD=25.86;ReadPosRankSum=1.691;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2257,222,0 chrXVI 339175 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=27.50;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3355,322,0 chrXVI 339202 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=3.482;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.713;QD=25.09;ReadPosRankSum=1.707;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3462,363,0 chrXVI 339231 . G T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=26.18;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3822,370,0 chrXVI 339275 . G T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=25.46;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3666,355,0 chrXVI 339477 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.51;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3781,376,0 chrXVI 339486 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.90;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3658,367,0 chrXVI 339516 . T A 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2869;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.969;QD=23.35;ReadPosRankSum=1.673;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4180,391,0 chrXVI 340194 . T C 5793.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.86;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5793,589,0 chrXVI 341700 . C T 5923.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.9610;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5923,589,0 chrXVI 342089 . T A 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=159;Dels=0.00;FS=4.771;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.730;QD=24.02;ReadPosRankSum=1.667;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3819,358,0 chrXVI 345435 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.654;QD=24.66;ReadPosRankSum=1.655;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2252,222,0 chrXVI 347162 . G T 2084 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2117,201,0 chrXVI 348351 . A T 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.284;QD=24.08;ReadPosRankSum=1.638;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3540,358,0 chrXVI 348646 . A G 5506.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6728;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.09;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5506,562,0 chrXVI 348690 . G A 7203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.8538;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.062;QD=28.36;ReadPosRankSum=0.034;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:7203,665,0 chrXVI 348815 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2958;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.80;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5116,514,0 chrXVI 349012 . T G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=139;Dels=0.00;FS=3.563;HaplotypeScore=8.8007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=22.99;ReadPosRankSum=1.655;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,133:139:99:3229,328,0 chrXVI 349570 . C T 5299.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.3386;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.90;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5299,508,0 chrXVI 352228 . A C 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.442;QD=24.93;ReadPosRankSum=1.713;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4488,445,0 chrXVI 352479 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9295;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.44;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2520,241,0 chrXVI 352604 . T G 2189 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2222,219,0 chrXVI 352789 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.98;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2596,252,0 chrXVI 352962 . A G 3065 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.76;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3098,313,0 chrXVI 353360 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.485;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.557;QD=27.84;ReadPosRankSum=1.633;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4844,478,0 chrXVI 354554 . C A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3974,403,0 chrXVI 354703 . G C 4445.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.78;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4445,445,0 chrXVI 356245 . T G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.682;DP=130;Dels=0.00;FS=2.593;HaplotypeScore=12.6753;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=2.078;QD=25.24;ReadPosRankSum=2.900;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3281,311,0 chrXVI 357842 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.432;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.802;QD=25.03;ReadPosRankSum=1.700;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2786,279,0 chrXVI 357853 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.80;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2687,262,0 chrXVI 357947 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.690;QD=26.65;ReadPosRankSum=1.701;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:3044,304,0 chrXVI 358063 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.58;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3170,313,0 chrXVI 358161 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3516,340,0 chrXVI 359574 . T A 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=12.553;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.337;QD=22.93;ReadPosRankSum=1.684;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1684,162,0 chrXVI 359596 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.00;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1353,132,0 chrXVI 360803 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=9.320;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.270;QD=26.71;ReadPosRankSum=2.949;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3686,361,0 chrXVI 362269 . G C 4184.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.65;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4184,412,0 chrXVI 363066 . T G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=7.562;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.958;QD=24.30;ReadPosRankSum=2.382;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3523,346,0 chrXVI 363218 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3330,337,0 chrXVI 363484 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.762;QD=26.76;ReadPosRankSum=1.663;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2709,265,0 chrXVI 363609 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.31;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3789,370,0 chrXVI 363799 . C G 4004.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.42;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:4004,391,0 chrXVI 364396 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4246;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.37;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4625,445,0 chrXVI 365920 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3830,391,0 chrXVI 366897 . A G 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.087;QD=24.89;ReadPosRankSum=1.713;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4456,457,0 chrXVI 368066 . C A 2555 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.07;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2588,247,0 chrXVI 368095 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.96;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2903,289,0 chrXVI 368135 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.25;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3413,331,0 chrXVI 368308 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.51;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3291,322,0 chrXVI 368611 . T G 4290.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2436;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.84;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4290,433,0 chrXVI 368905 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.3075;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.72;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3362,328,0 chrXVI 368962 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.578;QD=23.07;ReadPosRankSum=1.629;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3171,310,0 chrXVI 368980 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.879;QD=22.93;ReadPosRankSum=1.655;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3106,307,0 chrXVI 369001 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.46;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3547,346,0 chrXVI 369255 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=145;Dels=0.00;FS=9.977;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.555;QD=28.25;ReadPosRankSum=2.398;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:4096,381,0 chrXVI 369350 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=119;Dels=0.00;FS=11.452;HaplotypeScore=17.4290;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.178;QD=24.60;ReadPosRankSum=2.873;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2960,289,0 chrXVI 369476 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.086;QD=24.03;ReadPosRankSum=1.703;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2869,283,0 chrXVI 369483 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.81;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2497,252,0 chrXVI 369585 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.63;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3275,322,0 chrXVI 369665 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.8606;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=26.07;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3269,328,0 chrXVI 369748 . G A 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.774;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.587;QD=24.38;ReadPosRankSum=1.537;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3081,312,0 chrXVI 370280 . A G 5333.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3249;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.07;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5333,526,0 chrXVI 370692 . C G 4605.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.8682;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.62;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4605,457,0 chrXVI 370772 . T A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2878;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.80;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3314,337,0 chrXVI 370936 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=130;Dels=0.00;FS=5.409;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.867;QD=24.42;ReadPosRankSum=2.914;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:3208,322,0 chrXVI 371029 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.29;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3575,340,0 chrXVI 371082 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.672;QD=26.11;ReadPosRankSum=1.680;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3499,352,0 chrXVI 371406 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.24;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3831,388,0 chrXVI 371445 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0413;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.79;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4688,478,0 chrXVI 371571 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.3472;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.170;QD=24.54;ReadPosRankSum=1.696;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4712,463,0 chrXVI 371706 . T C 5857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.6114;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.662;QD=25.14;ReadPosRankSum=1.702;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5857,586,0 chrXVI 372091 . G A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.53;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4595,463,0 chrXVI 372243 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=25.43;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4653,460,0 chrXVI 372267 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.9411;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.55;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4664,466,0 chrXVI 372742 . C T 8726.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=11.7258;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.13;SB=-3.943e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:8726,821,0 chrXVI 372870 . A C 5430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.238;QD=25.37;ReadPosRankSum=1.699;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5430,544,0 chrXVI 373029 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1669,156,0 chrXVI 373351 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=26.03;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4164,409,0 chrXVI 373406 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=4.144;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-1.560;QD=21.84;ReadPosRankSum=1.711;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3538,352,0 chrXVI 373419 . T G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.374;QD=17.35;ReadPosRankSum=2.327;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2827,294,0 chrXVI 373422 . T A 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-1.063;QD=16.86;ReadPosRankSum=2.245;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2663,267,0 chrXVI 373522 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.5906;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.77;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4286,421,0 chrXVI 373674 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.98;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4452,436,0 chrXVI 373772 . G A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=26.92;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:4603,439,0 chrXVI 373847 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.48;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4255,427,0 chrXVI 373946 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.13;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3820,373,0 chrXVI 373972 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=26.07;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3571,343,0 chrXVI 374061 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.50;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3355,334,0 chrXVI 374261 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7374;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.82;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4897,457,0 chrXVI 376226 . A G 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.615;QD=26.33;ReadPosRankSum=1.713;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4897,487,0 chrXVI 376312 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.0207;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4424,442,0 chrXVI 377062 . T A 1585 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1618,159,0 chrXVI 377336 . C T 1691 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=18;QD=22.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1724,168,0 chrXVI 377513 . G A 1324 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=81;QD=9.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,97:139:99:1357,132,0 chrXVI 377648 . C T 2344 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=13;QD=24.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2377,232,0 chrXVI 377891 . A G 4136.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.459;DP=206;Dels=0.00;FS=7.147;HaplotypeScore=18.2204;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=10;MQRankSum=2.674;QD=20.08;ReadPosRankSum=3.051;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:13,192:206:99:4136,359,0 chrXVI 378124 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.06;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1645,165,0 chrXVI 378130 . C A 1612 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.36;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1645,156,0 chrXVI 378198 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.96;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2076,204,0 chrXVI 378223 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=25.11;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2519,244,0 chrXVI 378249 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2277;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.01;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2256,216,0 chrXVI 378635 . G C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.65;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4163,424,0 chrXVI 378670 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=19.6309;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=24.89;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4803,469,0 chrXVI 378721 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8385;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.08;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5101,499,0 chrXVI 378809 . A T 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=2.938;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.989;QD=24.87;ReadPosRankSum=2.411;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3216,313,0 chrXVI 378865 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8732;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-1.847;QD=21.39;ReadPosRankSum=2.345;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2044,210,0 chrXVI 379018 . C T 701 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.03;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:75:734,75,0 chrXVI 379460 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=9.27;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:2646,250,0 chrXVI 379477 . G T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=6.3834;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=12.74;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:3746,364,0 chrXVI 379573 . C T 5820.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.6819;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.05;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5820,592,0 chrXVI 379971 . T C 5246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.278;QD=25.34;ReadPosRankSum=1.665;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5246,514,0 chrXVI 380046 . T G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=193;Dels=0.00;FS=6.516;HaplotypeScore=18.8286;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.808;QD=23.36;ReadPosRankSum=2.398;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:4508,466,0 chrXVI 380250 . A G 5165.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.1852;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5165,508,0 chrXVI 380659 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.55;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3235,307,0 chrXVI 380674 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.95;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3265,316,0 chrXVI 380806 . T C 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.334;QD=26.54;ReadPosRankSum=1.712;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4645,451,0 chrXVI 380878 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.443;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.215;QD=25.99;ReadPosRankSum=1.707;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3587,361,0 chrXVI 381121 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=4.500;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.084;QD=26.27;ReadPosRankSum=1.704;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3284,319,0 chrXVI 381495 . G C 2372 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9206;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.23;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2405,243,0 chrXVI 381627 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=26.02;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2193,207,0 chrXVI 381922 . A C 2067 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=27.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:74:99:2100,204,0 chrXVI 381960 . C T 2661 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4110;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=27.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2694,276,0 chrXVI 382120 . A C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.39;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3484,355,0 chrXVI 382203 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.67;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2935,283,0 chrXVI 382213 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.810;QD=22.15;ReadPosRankSum=1.704;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2779,271,0 chrXVI 382287 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.185;QD=23.33;ReadPosRankSum=1.680;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3183,316,0 chrXVI 382450 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=5.047;HaplotypeScore=14.1534;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.597;QD=24.69;ReadPosRankSum=1.713;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,178:183:99:4518,463,0 chrXVI 382513 . T A 6223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.5074;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.303;QD=27.54;ReadPosRankSum=1.671;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:6223,601,0 chrXVI 382832 . C A 5618.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5618,538,0 chrXVI 383361 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.61;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3081,307,0 chrXVI 383709 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.194;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.625;QD=24.72;ReadPosRankSum=1.650;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4178,409,0 chrXVI 383919 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=25.24;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3736,361,0 chrXVI 383928 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.01;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3625,349,0 chrXVI 385271 . C T 5735.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5735,571,0 chrXVI 385957 . A G 7110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=262;Dels=0.00;FS=4.624;HaplotypeScore=17.5736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.007;QD=27.14;ReadPosRankSum=1.719;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:7110,697,0 chrXVI 386168 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.2439;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.85;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4592,472,0 chrXVI 386960 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.92;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3444,328,0 chrXVI 386966 . T G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=151;Dels=0.00;FS=13.581;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.299;QD=22.07;ReadPosRankSum=3.341;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:4,145:151:99:3332,328,0 chrXVI 387009 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.27;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3764,361,0 chrXVI 387471 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.35;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4179,400,0 chrXVI 387550 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=4.150;HaplotypeScore=14.8214;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.457;QD=25.08;ReadPosRankSum=0.000;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4564,454,0 chrXVI 387741 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.23;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3369,334,0 chrXVI 387747 . C A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.06;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3574,346,0 chrXVI 387786 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.321;QD=24.57;ReadPosRankSum=1.668;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3980,394,0 chrXVI 388066 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=180;Dels=0.00;FS=5.643;HaplotypeScore=10.7567;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.659;QD=25.61;ReadPosRankSum=2.961;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4610,454,0 chrXVI 388170 . G C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4079,403,0 chrXVI 388241 . T A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1573;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.26;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3912,394,0 chrXVI 388417 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.092;HaplotypeScore=7.0338;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.087;QD=26.06;ReadPosRankSum=1.689;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4247,418,0 chrXVI 388527 . A C 4678.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.35;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4678,457,0 chrXVI 388558 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.359;QD=27.79;ReadPosRankSum=1.710;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4391,427,0 chrXVI 388689 . G A 5526.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.4593;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.19;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5526,532,0 chrXVI 388922 . A T 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=169;Dels=0.00;FS=5.377;HaplotypeScore=14.0056;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.887;QD=24.34;ReadPosRankSum=2.959;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4114,394,0 chrXVI 389144 . A T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.4594;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.25;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4908,487,0 chrXVI 389519 . T C 6807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=264;Dels=0.00;FS=3.555;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.376;QD=25.78;ReadPosRankSum=1.706;SB=-3.488e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6807,682,0 chrXVI 389549 . C A 5730.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.35;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5730,550,0 chrXVI 389644 . T A 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=214;Dels=0.00;FS=9.983;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.789;QD=24.00;ReadPosRankSum=2.920;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:5135,493,0 chrXVI 389680 . C G 5361.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.5560;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.04;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5361,532,0 chrXVI 389708 . G A 5402.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.90;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5402,517,0 chrXVI 389788 . G A 6621.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.1877;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.36;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:6621,652,0 chrXVI 389821 . T C 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.7429;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.467;QD=22.19;ReadPosRankSum=1.717;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5127,514,0 chrXVI 389951 . T C 7355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.975;DP=283;Dels=0.00;FS=9.220;HaplotypeScore=21.1115;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.507;QD=25.99;ReadPosRankSum=2.889;SB=-4.068e+03 GT:AD:DP:GQ:PL 1/1:3,277:283:99:7355,727,0 chrXVI 390156 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.14;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4525,454,0 chrXVI 390636 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3605,352,0 chrXVI 391587 . G A 6482.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6482,625,0 chrXVI 391638 . C T 6420.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.5047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,249:254:99:6420,625,0 chrXVI 392179 . A G 6074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=227;Dels=0.00;FS=6.598;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.961;QD=26.76;ReadPosRankSum=2.384;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:6074,607,0 chrXVI 392213 . T C 5515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=208;Dels=0.00;FS=2.962;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.626;QD=26.51;ReadPosRankSum=2.402;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:5515,538,0 chrXVI 392272 . A G 5164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=200;Dels=0.00;FS=13.279;HaplotypeScore=12.3341;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=1.062;QD=25.82;ReadPosRankSum=3.416;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:4,194:200:99:5164,514,0 chrXVI 392460 . G A 5772.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.0947;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.85;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5772,562,0 chrXVI 392874 . A G 6273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=256;Dels=0.00;FS=3.027;HaplotypeScore=10.9281;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-1.555;QD=24.50;ReadPosRankSum=1.705;SB=-3.615e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:6273,619,0 chrXVI 393285 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=187;Dels=0.00;FS=2.987;HaplotypeScore=16.3941;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.718;QD=22.73;ReadPosRankSum=2.396;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4250,436,0 chrXVI 393808 . T A 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;MQRankSum=-0.820;QD=28.73;ReadPosRankSum=1.696;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2762,265,0 chrXVI 394211 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=27.40;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4165,415,0 chrXVI 394424 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.98;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2856,268,0 chrXVI 394442 . T A 2410 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.85;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2443,235,0 chrXVI 396203 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.76;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3374,343,0 chrXVI 397404 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=26.31;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2822,280,0 chrXVI 397584 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=2.839;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.505;QD=21.65;ReadPosRankSum=2.372;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3421,334,0 chrXVI 397587 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.99;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3609,346,0 chrXVI 398119 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.615;QD=24.41;ReadPosRankSum=1.703;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2938,286,0 chrXVI 398362 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.10;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2066,204,0 chrXVI 398561 . G A 4632.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.09;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4632,448,0 chrXVI 398626 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.38;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4274,406,0 chrXVI 398858 . T C 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=178;Dels=0.00;FS=2.847;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.507;QD=24.81;ReadPosRankSum=2.422;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4417,442,0 chrXVI 399485 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.011;QD=25.38;ReadPosRankSum=1.665;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3959,391,0 chrXVI 399602 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=28.91;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:4307,409,0 chrXVI 400049 . G A 5064.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.7137;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.24;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5064,487,0 chrXVI 400178 . A G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=215;Dels=0.00;FS=7.278;HaplotypeScore=12.0048;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.870;QD=25.44;ReadPosRankSum=2.403;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:5470,550,0 chrXVI 400646 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5186,496,0 chrXVI 400751 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.211;QD=25.98;ReadPosRankSum=1.711;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4260,442,0 chrXVI 400841 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3637,358,0 chrXVI 400919 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.58;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3458,328,0 chrXVI 401426 . C T 5511.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.51;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5511,529,0 chrXVI 401471 . A G 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=226;Dels=0.00;FS=9.947;HaplotypeScore=17.8496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.204;QD=23.46;ReadPosRankSum=2.878;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:3,219:226:99:5301,541,0 chrXVI 401651 . T G 5246.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.1840;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.72;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5246,511,0 chrXVI 401783 . C T 6121.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.5064;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=28.60;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6121,586,0 chrXVI 401828 . C T 4933.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.66;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4933,490,0 chrXVI 401858 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.67;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4143,424,0 chrXVI 402100 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.84;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3731,358,0 chrXVI 402278 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3162;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.60;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4461,424,0 chrXVI 402449 . T G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3934,385,0 chrXVI 402848 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.12;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2985,298,0 chrXVI 403028 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.67;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3494,328,0 chrXVI 403061 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.50;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3366,334,0 chrXVI 403300 . G T 488.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.129;DP=143;Dels=0.00;FS=262.124;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.765;QD=3.41;ReadPosRankSum=-8.665;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:86,57:143:99:518,0,1658 chrXVI 403383 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3962,379,0 chrXVI 403502 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.01;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4101,409,0 chrXVI 403562 . T C 4154.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.96;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4154,409,0 chrXVI 403691 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.26;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5331,523,0 chrXVI 403823 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=3.218;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.373;QD=25.68;ReadPosRankSum=1.714;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:5008,511,0 chrXVI 403919 . C A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.3670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.13;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4851,487,0 chrXVI 404106 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=186;Dels=0.00;FS=2.819;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.020;QD=18.53;ReadPosRankSum=2.423;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:3447,340,0 chrXVI 404554 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=26.52;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4137,397,0 chrXVI 404634 . C A 2360 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.84;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2393,228,0 chrXVI 404878 . T C 481 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.04;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:51:514,51,0 chrXVI 404886 . C T 311 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.44;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:344,33,0 chrXVI 405804 . A G 7188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=264;Dels=0.00;FS=4.562;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.232;QD=27.23;ReadPosRankSum=1.719;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:7188,724,0 chrXVI 405840 . T C 5739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=236;Dels=0.00;FS=2.837;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.057;QD=24.32;ReadPosRankSum=2.418;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5739,556,0 chrXVI 405846 . G A 5379.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.91;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5379,511,0 chrXVI 406247 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=5.699;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.027;QD=27.53;ReadPosRankSum=1.705;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3579,361,0 chrXVI 406317 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.83;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3900,379,0 chrXVI 406922 . G T 2752 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.57;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2785,268,0 chrXVI 406979 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;MQRankSum=-1.572;QD=21.48;ReadPosRankSum=1.700;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2374,231,0 chrXVI 407033 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-2.233;QD=12.42;ReadPosRankSum=2.269;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:1722,168,0 chrXVI 407036 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=12.84;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:1818,174,0 chrXVI 407712 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=120;Dels=0.00;FS=6.208;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.511;QD=21.78;ReadPosRankSum=2.366;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2647,273,0 chrXVI 408112 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9652;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.49;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3824,382,0 chrXVI 408303 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=26.39;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4117,394,0 chrXVI 408319 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=25.38;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3959,385,0 chrXVI 408832 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.98;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2934,292,0 chrXVI 408842 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.67;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3043,292,0 chrXVI 408889 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2074;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.28;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3842,370,0 chrXVI 409917 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.38;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4848,463,0 chrXVI 410004 . G C 4894.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.49;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4894,490,0 chrXVI 410371 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3282,334,0 chrXVI 410697 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.61;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3173,319,0 chrXVI 410778 . A T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.56;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4151,415,0 chrXVI 410844 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=182;Dels=0.00;FS=12.684;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.539;QD=25.40;ReadPosRankSum=2.950;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4623,457,0 chrXVI 411349 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.739;QD=23.20;ReadPosRankSum=1.622;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3665,352,0 chrXVI 411358 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=23.42;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3654,346,0 chrXVI 411383 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.352;QD=20.24;ReadPosRankSum=1.685;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2988,306,0 chrXVI 412217 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.653;QD=24.87;ReadPosRankSum=1.704;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3067,298,0 chrXVI 412483 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.51;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2790,277,0 chrXVI 413248 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3723;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.44;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3063,304,0 chrXVI 413865 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.05;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2764,265,0 chrXVI 413894 . T A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=28.87;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3436,331,0 chrXVI 414288 . A G 5040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.0563;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.023;QD=22.30;ReadPosRankSum=1.717;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,222:226:99:5040,517,0 chrXVI 414483 . A G 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=3.316;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.384;QD=25.41;ReadPosRankSum=1.685;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5642,562,0 chrXVI 414884 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=6.025;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.291;QD=24.79;ReadPosRankSum=2.816;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2611,258,0 chrXVI 415343 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.17;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1446,141,0 chrXVI 415381 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.95;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1175,114,0 chrXVI 415490 . T G 854 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.69;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:887,87,0 chrXVI 415608 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1648,165,0 chrXVI 415720 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.54;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3608,343,0 chrXVI 416230 . T A 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.862;QD=25.24;ReadPosRankSum=1.105;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5022,478,0 chrXVI 416247 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.663;QD=24.27;ReadPosRankSum=1.714;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4562,445,0 chrXVI 416425 . T A 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.340;QD=25.57;ReadPosRankSum=1.623;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4065,420,0 chrXVI 416451 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.225;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.690;QD=25.30;ReadPosRankSum=1.669;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4199,427,0 chrXVI 416547 . G A 4284.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.81;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4284,406,0 chrXVI 417505 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.894;QD=25.87;ReadPosRankSum=1.688;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:4113,409,0 chrXVI 418090 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.53;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2101,204,0 chrXVI 419190 . A C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.941;HaplotypeScore=12.1722;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.201;QD=26.05;ReadPosRankSum=0.185;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3985,400,0 chrXVI 419444 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.6121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3664,352,0 chrXVI 419531 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=123;Dels=0.00;FS=3.155;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.909;QD=24.59;ReadPosRankSum=1.647;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3058,307,0 chrXVI 419883 . G T 2552 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.85;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2585,250,0 chrXVI 420042 . A G 1779 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=14.95;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1812,213,0 chrXVI 420043 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=15.12;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1847,216,0 chrXVI 420386 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2576,253,0 chrXVI 420769 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5883;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.15;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3425,340,0 chrXVI 421082 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.01;FS=4.488;HaplotypeScore=8.5797;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.946;QD=24.46;ReadPosRankSum=1.711;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:4061,415,0 chrXVI 421124 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=170;Dels=0.00;FS=2.584;HaplotypeScore=14.0710;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.494;QD=25.50;ReadPosRankSum=2.947;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:4335,421,0 chrXVI 422111 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.57;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3914,379,0 chrXVI 422208 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.30;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3241,322,0 chrXVI 422582 . T G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.97;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3396,343,0 chrXVI 422588 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=5.466;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.410;QD=24.03;ReadPosRankSum=2.777;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3364,334,0 chrXVI 422730 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=154;Dels=0.00;FS=3.040;HaplotypeScore=11.8193;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.320;QD=27.05;ReadPosRankSum=2.368;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:4166,406,0 chrXVI 423212 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.3501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3217,304,0 chrXVI 423324 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.0655;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.61;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3842,388,0 chrXVI 423638 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.58;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3858,361,0 chrXVI 423898 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.05;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4031,400,0 chrXVI 423962 . G T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.29;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3642,355,0 chrXVI 423981 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=3.230;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.369;QD=24.49;ReadPosRankSum=1.689;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:4017,394,0 chrXVI 424350 . G T 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.469;DP=147;Dels=0.00;FS=255.746;HaplotypeScore=55.0929;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-1.483;QD=4.32;ReadPosRankSum=-3.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,66:147:99:665,0,1374 chrXVI 425230 . A G 161.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=149;Dels=0.03;FS=20.537;HaplotypeScore=89.2185;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=1.917;QD=1.08;ReadPosRankSum=-1.566;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:91,53:144:99:191,0,562 chrXVI 425481 . C T 6660.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.5829;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.58;SB=-3.628e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6660,661,0 chrXVI 425740 . A G 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.960;QD=26.07;ReadPosRankSum=1.676;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4823,472,0 chrXVI 426328 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.78;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3856,364,0 chrXVI 426370 . A T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.07;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3911,394,0 chrXVI 426447 . C T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.27;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4598,442,0 chrXVI 426505 . C T 4797.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.22;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4797,463,0 chrXVI 426991 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.982;QD=23.79;ReadPosRankSum=2.413;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3245,319,0 chrXVI 427075 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=25.98;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3254,313,0 chrXVI 427120 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.55;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2360,223,0 chrXVI 427130 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.831;QD=22.01;ReadPosRankSum=1.697;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2278,225,0 chrXVI 427238 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0184;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.93;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3093,298,0 chrXVI 427708 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.71;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:964,93,0 chrXVI 427730 . C A 813 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.91;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:846,81,0 chrXVI 428058 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.01;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2764,274,0 chrXVI 428065 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.42;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3217,313,0 chrXVI 428130 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2038;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.976;QD=23.61;ReadPosRankSum=2.409;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4250,421,0 chrXVI 428253 . G A 6004.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.2227;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=25.99;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6004,580,0 chrXVI 428330 . C T 5639.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.11;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5639,541,0 chrXVI 428479 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=174;Dels=0.00;FS=8.595;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.080;QD=25.23;ReadPosRankSum=2.337;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4390,433,0 chrXVI 428562 . C G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.05;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3382,340,0 chrXVI 428616 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.224;QD=23.47;ReadPosRankSum=1.643;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2779,277,0 chrXVI 428691 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=9.4635;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.197;QD=27.18;ReadPosRankSum=1.701;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:3023,298,0 chrXVI 428880 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=7.707;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.229;QD=25.14;ReadPosRankSum=2.348;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3646,361,0 chrXVI 428904 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=25.12;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3517,337,0 chrXVI 428908 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=25.11;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3516,340,0 chrXVI 428918 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=5.994;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.752;QD=22.36;ReadPosRankSum=2.873;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3354,337,0 chrXVI 429004 . C G 4870.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.9786;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.10;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4870,478,0 chrXVI 429187 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=24.27;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3956,400,0 chrXVI 429194 . A C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=7.360;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.190;QD=23.36;ReadPosRankSum=2.387;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3691,361,0 chrXVI 429229 . C G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.71;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3396,346,0 chrXVI 429289 . C G 5013.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.94;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5013,496,0 chrXVI 429479 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.16;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4805,487,0 chrXVI 429656 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.97;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2478,238,0 chrXVI 429659 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.48;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2475,240,0 chrXVI 429704 . A T 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.827;QD=23.12;ReadPosRankSum=1.693;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2068,201,0 chrXVI 429834 . A C 3282.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=26.47;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3282,328,0 chrXVI 429879 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=84.0456;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=25.65;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2675,253,0 chrXVI 429951 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.7981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.360;QD=25.18;ReadPosRankSum=3.765;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:6,140:146:99:3677,358,0 chrXVI 430091 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.16;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2958,286,0 chrXVI 430100 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.71;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2808,274,0 chrXVI 430227 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.31;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3605,343,0 chrXVI 430271 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=26.01;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3849,367,0 chrXVI 430826 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=177;Dels=0.00;FS=6.819;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.035;QD=26.38;ReadPosRankSum=2.366;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4670,469,0 chrXVI 430850 . A T 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=167;Dels=0.00;FS=2.923;HaplotypeScore=5.6946;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.257;QD=24.81;ReadPosRankSum=2.361;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4143,418,0 chrXVI 432226 . C G 6437.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:6437,631,0 chrXVI 432771 . A C 6927.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.4541;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.28;SB=-4.032e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:6927,670,0 chrXVI 432881 . C T 7273.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.64;SB=-3.974e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:7273,706,0 chrXVI 433340 . A G 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=211;Dels=0.00;FS=2.866;HaplotypeScore=15.5930;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.241;QD=22.91;ReadPosRankSum=2.320;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4835,481,0 chrXVI 433481 . T C 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=202;Dels=0.00;FS=5.899;HaplotypeScore=19.2395;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.412;QD=24.26;ReadPosRankSum=2.965;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4901,490,0 chrXVI 434157 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1356,135,0 chrXVI 434269 . A T 1822 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=27.19;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1855,183,0 chrXVI 434405 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.85;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2131,210,0 chrXVI 434418 . G T 2286 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7708;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.57;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2319,237,0 chrXVI 434477 . T A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=26.10;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3810,367,0 chrXVI 434506 . C A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.92;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3991,406,0 chrXVI 434613 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0058;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=27.25;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4877,469,0 chrXVI 435056 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5465;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.24;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3393,334,0 chrXVI 435173 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.9734;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.99;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3407,354,0 chrXVI 435332 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.35;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3556,343,0 chrXVI 435413 . C G 4327.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.28;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4327,430,0 chrXVI 435620 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.21;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2865,289,0 chrXVI 435711 . A T 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.114;QD=26.56;ReadPosRankSum=1.608;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2291,216,0 chrXVI 436158 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=4.342;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.065;QD=26.42;ReadPosRankSum=1.699;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2860,286,0 chrXVI 436358 . T C 1760 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=29.33;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1793,174,0 chrXVI 436359 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;MQRankSum=0.199;QD=28.70;ReadPosRankSum=1.675;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1784,174,0 chrXVI 436450 . T C 959 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=22.83;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:992,102,0 chrXVI 436464 . G A 596 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=16.56;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:629,69,0 chrXVI 436465 . A C 627 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=17.42;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:660,69,0 chrXVI 436481 . A G 265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;MQRankSum=0.578;QD=11.04;ReadPosRankSum=1.589;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:30:298,30,0 chrXVI 443131 . A G 49.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=9.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:5:9:82,9,0 chrXVI 443804 . T A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=25.79;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3430,325,0 chrXVI 443905 . T G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.582;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.281;QD=25.61;ReadPosRankSum=0.451;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3739,379,0 chrXVI 443969 . G C 4624.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=25.69;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4624,454,0 chrXVI 444034 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=25.58;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3376,331,0 chrXVI 444059 . C A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=26.50;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3683,352,0 chrXVI 444118 . T C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=27.70;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4238,409,0 chrXVI 444290 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=22.99;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2493,246,0 chrXVI 444303 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=22.57;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2335,234,0 chrXVI 444306 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=21.98;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2297,231,0 chrXVI 444321 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.02;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2147,207,0 chrXVI 444367 . A T 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.351;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.033;QD=23.85;ReadPosRankSum=1.699;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2561,258,0 chrXVI 444434 . A G 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=110;Dels=0.00;FS=3.041;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.456;QD=24.70;ReadPosRankSum=2.314;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2750,274,0 chrXVI 444490 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=7.2755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=26.58;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3323,319,0 chrXVI 444574 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=124;Dels=0.00;FS=10.146;HaplotypeScore=12.0538;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.435;QD=23.85;ReadPosRankSum=2.910;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2991,298,0 chrXVI 444685 . A G 4828.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.96;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4828,472,0 chrXVI 444755 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1306;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.66;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3772,361,0 chrXVI 444899 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.250;QD=25.43;ReadPosRankSum=1.715;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:5213,523,0 chrXVI 444920 . T A 5123.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=26.68;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5123,508,0 chrXVI 444980 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.86;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4109,397,0 chrXVI 445300 . T C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.820;QD=21.50;ReadPosRankSum=1.696;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2097,210,0 chrXVI 445378 . G T 2975 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.2686;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.00;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3008,289,0 chrXVI 445425 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.27;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2383,234,0 chrXVI 445607 . G A 1468 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1501,144,0 chrXVI 445861 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.479;QD=26.72;ReadPosRankSum=1.690;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2224,225,0 chrXVI 445985 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.99;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3301,325,0 chrXVI 446280 . A T 4896.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.46;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4896,478,0 chrXVI 446457 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.609;DP=174;Dels=0.00;FS=7.790;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.374;QD=23.66;ReadPosRankSum=3.527;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:5,167:174:99:4116,424,0 chrXVI 446756 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.54;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4444,451,0 chrXVI 447294 . G T 5486.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.71;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5486,526,0 chrXVI 447414 . T C 5743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=7.030;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.480;QD=24.54;ReadPosRankSum=2.397;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5743,559,0 chrXVI 448074 . G A 5038.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.5273;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.22;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5038,508,0 chrXVI 448089 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.1499;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.333;QD=23.44;ReadPosRankSum=1.700;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:5064,499,0 chrXVI 448143 . G A 5142.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.60;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:5142,502,0 chrXVI 448407 . A G 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=201;Dels=0.00;FS=3.000;HaplotypeScore=21.0547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.783;QD=24.00;ReadPosRankSum=2.400;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4823,490,0 chrXVI 448559 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.486;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.448;QD=24.97;ReadPosRankSum=1.656;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4595,454,0 chrXVI 449133 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3139,301,0 chrXVI 450160 . T C 5544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.571;QD=25.67;ReadPosRankSum=1.700;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5544,553,0 chrXVI 450430 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.97;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1848,183,0 chrXVI 450675 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.87;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2723,262,0 chrXVI 450731 . T A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.44;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3328,322,0 chrXVI 450989 . G T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.42;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3940,391,0 chrXVI 451153 . T G 3081 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=11.2827;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.10;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3114,330,0 chrXVI 451219 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.068;QD=24.88;ReadPosRankSum=1.708;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3682,367,0 chrXVI 451317 . A G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.111;QD=24.61;ReadPosRankSum=2.369;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2297,231,0 chrXVI 452126 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.61;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2937,280,0 chrXVI 452140 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.41;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2857,289,0 chrXVI 452142 . T G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.406;QD=22.10;ReadPosRankSum=1.678;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2884,289,0 chrXVI 452400 . G C 5250.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7216;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=27.06;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5250,517,0 chrXVI 452986 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.69;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3950,382,0 chrXVI 453010 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.56;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3414,343,0 chrXVI 453075 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.779;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.195;QD=25.63;ReadPosRankSum=2.409;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:3134,304,0 chrXVI 453106 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3194,307,0 chrXVI 453333 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.16;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2597,261,0 chrXVI 453447 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.746;QD=24.78;ReadPosRankSum=1.705;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3296,328,0 chrXVI 453508 . C T 5426.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=27.13;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5426,517,0 chrXVI 453647 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.015;QD=23.77;ReadPosRankSum=1.630;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4064,394,0 chrXVI 453873 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4120;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.94;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4499,421,0 chrXVI 454244 . T C 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=185;Dels=0.00;FS=2.713;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.153;QD=23.99;ReadPosRankSum=2.423;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4439,436,0 chrXVI 454319 . G A 8166.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=12.7035;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=27.40;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,295:298:99:8166,785,0 chrXVI 454517 . A G 10355.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=443;Dels=0.00;FS=7.036;HaplotypeScore=25.4194;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.809;QD=23.37;ReadPosRankSum=2.422;SB=-5.690e+03 GT:AD:DP:GQ:PL 1/1:2,439:443:99:10355,1043,0 chrXVI 454578 . T G 7997.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=398;Dels=0.00;FS=6.049;HaplotypeScore=18.0793;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.982;QD=20.09;ReadPosRankSum=2.926;SB=-5.632e+03 GT:AD:DP:GQ:PL 1/1:3,389:398:99:7997,802,0 chrXVI 454587 . C T 8293.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=14.4741;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.77;SB=-5.151e+03 GT:AD:DP:GQ:PL 1/1:0,380:381:99:8293,797,0 chrXVI 455063 . G C 5117.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.74;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5117,508,0 chrXVI 455098 . A C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=189;Dels=0.00;FS=9.081;HaplotypeScore=181.3495;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.406;QD=0.20;ReadPosRankSum=2.899;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:4,183:189:9:70,9,0 chrXVI 455359 . T A 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=5.441;HaplotypeScore=5.4757;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.099;QD=24.51;ReadPosRankSum=1.683;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3431,334,0 chrXVI 455366 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=5.556;HaplotypeScore=5.5851;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.169;QD=22.94;ReadPosRankSum=1.680;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3107,327,0 chrXVI 455475 . T A 2269 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.38;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2302,222,0 chrXVI 455516 . G T 1502 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.46;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1535,156,0 chrXVI 455538 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.96;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1183,114,0 chrXVI 455737 . A C 550 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:583,60,0 chrXVI 458635 . G C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.77;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3517,355,0 chrXVI 458970 . A T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.45;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3756,370,0 chrXVI 459330 . T G 2488 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.16;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2521,249,0 chrXVI 459913 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=26.55;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3930,394,0 chrXVI 460008 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.56;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3445,334,0 chrXVI 462045 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=28.59;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1691,165,0 chrXVI 462073 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=28.24;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1812,171,0 chrXVI 462121 . C G 1995 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=27.33;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:2028,198,0 chrXVI 462153 . C A 2223 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=27.44;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2256,213,0 chrXVI 462164 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=25.96;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2240,216,0 chrXVI 462319 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.30;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3241,322,0 chrXVI 462499 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.70;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4289,424,0 chrXVI 462656 . G A 7924.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=26.2784;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.61;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,318:322:99:7924,847,0 chrXVI 462756 . T C 7363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=323;Dels=0.00;FS=5.216;HaplotypeScore=18.4653;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.905;QD=22.80;ReadPosRankSum=2.618;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:4,318:323:99:7363,720,0 chrXVI 462814 . T G 9440.01 filter AC=2;AF=1.00;AN=2;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=16.6151;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.64;SB=-5.985e+03 GT:AD:DP:GQ:PL 1/1:0,413:417:99:9440,938,0 chrXVI 462835 . G A 8386.01 filter AC=2;AF=1.00;AN=2;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.23;SB=-5.025e+03 GT:AD:DP:GQ:PL 1/1:0,392:395:99:8386,838,0 chrXVI 462843 . T C 8932.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=404;Dels=0.00;FS=6.966;HaplotypeScore=11.3696;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.447;QD=22.11;ReadPosRankSum=2.425;SB=-5.445e+03 GT:AD:DP:GQ:PL 1/1:2,402:404:99:8932,884,0 chrXVI 462936 . C T 8980.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=24.4491;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.15;SB=-4.703e+03 GT:AD:DP:GQ:PL 1/1:0,356:357:99:8980,863,0 chrXVI 463061 . T C 8667.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=364;Dels=0.00;FS=2.943;HaplotypeScore=12.9120;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.947;QD=23.81;ReadPosRankSum=2.429;SB=-4.627e+03 GT:AD:DP:GQ:PL 1/1:2,360:364:99:8667,854,0 chrXVI 463075 . C T 8583.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=8.8739;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.91;SB=-4.493e+03 GT:AD:DP:GQ:PL 1/1:0,356:359:99:8583,818,0 chrXVI 463543 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=164;Dels=0.00;FS=4.387;HaplotypeScore=21.2971;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.962;QD=21.93;ReadPosRankSum=0.235;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3596,381,0 chrXVI 463700 . C T 5759.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5759,556,0 chrXVI 464146 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.03;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3059,295,0 chrXVI 464194 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8081;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.954;QD=18.79;ReadPosRankSum=1.661;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2814,282,0 chrXVI 464223 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.52;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2495,241,0 chrXVI 464559 . G A 6068.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.98;SB=-3.437e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6068,607,0 chrXVI 464709 . C T 6926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DP=268;Dels=0.00;FS=4.046;HaplotypeScore=22.8907;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.706;QD=25.84;ReadPosRankSum=-0.171;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:1,264:268:99:6926,673,0 chrXVI 465889 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.051;QD=24.87;ReadPosRankSum=1.703;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2943,297,0 chrXVI 466112 . G T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.81;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4671,463,0 chrXVI 466824 . G C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=26.88;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3414,334,0 chrXVI 467054 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4036;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.72;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2602,247,0 chrXVI 467077 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=118;Dels=0.00;FS=4.956;HaplotypeScore=5.4405;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.291;QD=17.27;ReadPosRankSum=1.033;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:5,111:118:99:2071,197,0 chrXVI 467087 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.62;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2628,267,0 chrXVI 467237 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=27.95;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3829,355,0 chrXVI 467571 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.801;QD=25.73;ReadPosRankSum=1.695;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2426,246,0 chrXVI 467632 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3237,319,0 chrXVI 467771 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=27.79;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3724,364,0 chrXVI 468177 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.17;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4130,397,0 chrXVI 468262 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.266;QD=26.46;ReadPosRankSum=1.705;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3466,340,0 chrXVI 468512 . A C 4463.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.65;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4463,448,0 chrXVI 468617 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3716,370,0 chrXVI 468648 . C G 4225.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:4225,412,0 chrXVI 469012 . C A 5331.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.91;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:5331,511,0 chrXVI 469693 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.05;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2137,216,0 chrXVI 469730 . G C 2143 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.35;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2176,216,0 chrXVI 470616 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.071;HaplotypeScore=15.1319;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.024;QD=25.66;ReadPosRankSum=1.708;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3747,373,0 chrXVI 470860 . C G 5159.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.01;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:5159,517,0 chrXVI 471189 . G T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4355,430,0 chrXVI 471267 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4481,439,0 chrXVI 471343 . C A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.74;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4064,406,0 chrXVI 471834 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=174;Dels=0.00;FS=9.010;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.127;QD=24.53;ReadPosRankSum=3.409;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:4269,430,0 chrXVI 471891 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=2.870;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.258;QD=22.49;ReadPosRankSum=1.417;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3554,358,0 chrXVI 472110 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.866;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.172;QD=25.39;ReadPosRankSum=1.686;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3859,391,0 chrXVI 472490 . G A 4203.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9961;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.17;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4203,412,0 chrXVI 472568 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.6868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.66;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3310,316,0 chrXVI 472696 . A C 2810 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.76;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2843,283,0 chrXVI 472783 . A T 1823 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=27.62;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1856,174,0 chrXVI 472825 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.41;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1400,135,0 chrXVI 472848 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.02;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1274,120,0 chrXVI 472894 . G T 1631 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.9055;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.34;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1664,156,0 chrXVI 473286 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=3.545;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.365;QD=24.91;ReadPosRankSum=1.714;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4758,478,0 chrXVI 473391 . T C 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=3.021;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.021;QD=25.17;ReadPosRankSum=2.410;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4657,475,0 chrXVI 473481 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.58;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3760,382,0 chrXVI 473594 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.91;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4871,463,0 chrXVI 473877 . A C 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.273;QD=25.09;ReadPosRankSum=1.677;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4817,475,0 chrXVI 474003 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=155;Dels=0.00;FS=9.727;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.136;QD=23.24;ReadPosRankSum=2.851;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3602,370,0 chrXVI 474096 . G T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.96;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4672,454,0 chrXVI 474237 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0786;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.99;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3847,367,0 chrXVI 474371 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3583,355,0 chrXVI 474450 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9476;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.406;QD=23.96;ReadPosRankSum=1.712;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4073,412,0 chrXVI 474526 . C T 5401.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.8587;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.35;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5401,514,0 chrXVI 474960 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.52;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2253,213,0 chrXVI 475484 . G C 3932.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.13;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3932,382,0 chrXVI 475496 . G A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8297;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.78;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3918,379,0 chrXVI 476694 . C G 2846 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.1645;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.35;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2879,289,0 chrXVI 476826 . G A 2631 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=20.88;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2664,261,0 chrXVI 476833 . T C 2383 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-0.364;QD=19.06;ReadPosRankSum=2.410;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2416,234,0 chrXVI 476836 . T C 2381 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-0.944;QD=18.46;ReadPosRankSum=2.392;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2414,243,0 chrXVI 476851 . A T 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=6.582;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=1.653;QD=20.27;ReadPosRankSum=1.680;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2708,259,0 chrXVI 477202 . A T 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.854;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.464;QD=25.56;ReadPosRankSum=1.664;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3911,376,0 chrXVI 477321 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.768;DP=149;Dels=0.00;FS=16.114;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.343;QD=24.94;ReadPosRankSum=3.747;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:5,144:149:99:3716,376,0 chrXVI 477481 . C G 4437.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.51;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4437,445,0 chrXVI 478120 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=23.64;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3404,337,0 chrXVI 478141 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=22.62;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3416,325,0 chrXVI 478144 . A T 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=0.283;QD=20.12;ReadPosRankSum=1.709;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3111,307,0 chrXVI 478200 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=6.801;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.985;QD=20.02;ReadPosRankSum=2.416;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2956,292,0 chrXVI 478228 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.78;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3101,295,0 chrXVI 478277 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.732;QD=23.99;ReadPosRankSum=1.700;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2672,267,0 chrXVI 478288 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=133;Dels=0.00;FS=5.901;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.485;QD=21.89;ReadPosRankSum=2.870;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,128:133:99:2944,292,0 chrXVI 478558 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0245;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.21;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3696,361,0 chrXVI 478657 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.36;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3005,298,0 chrXVI 478714 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.18;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3823,388,0 chrXVI 478917 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.91;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4042,403,0 chrXVI 479396 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3810,379,0 chrXVI 479770 . A G 6822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=256;Dels=0.00;FS=3.962;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.586;QD=26.65;ReadPosRankSum=1.678;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:6822,676,0 chrXVI 479826 . C T 7338.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.08;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:7338,718,0 chrXVI 479899 . C T 8826.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=27.33;SB=-4.028e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:8826,833,0 chrXVI 479920 . A C 7357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.984;QD=23.96;ReadPosRankSum=1.424;SB=-3.904e+03 GT:AD:DP:GQ:PL 1/1:3,302:307:99:7357,733,0 chrXVI 479932 . G T 6777.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.45;SB=-4.320e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6777,661,0 chrXVI 480296 . C A 64.97 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=14.3726;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=1.05;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:9:97,9,0 chrXVI 480383 . T A 1910 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.90;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1943,186,0 chrXVI 480441 . T G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=87;Dels=0.00;FS=2.535;HaplotypeScore=9.3808;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.198;QD=24.77;ReadPosRankSum=2.803;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:2188,216,0 chrXVI 480754 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.45;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4813,484,0 chrXVI 480795 . T C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=2.981;HaplotypeScore=16.6194;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.910;QD=25.20;ReadPosRankSum=2.399;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4888,493,0 chrXVI 481072 . T G 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.5926;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.251;QD=24.03;ReadPosRankSum=-1.715;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:5094,508,0 chrXVI 481833 . A G 5930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=249;Dels=0.00;FS=2.500;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.672;QD=23.82;ReadPosRankSum=2.923;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,245:249:99:5930,583,0 chrXVI 481940 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.78;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3321,325,0 chrXVI 481955 . G T 3043 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.37;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3076,304,0 chrXVI 481979 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.92;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3219,319,0 chrXVI 482155 . G A 6114.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.7205;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=27.17;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:6114,583,0 chrXVI 482212 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=26.72;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4436,418,0 chrXVI 482234 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.299;QD=24.42;ReadPosRankSum=1.708;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3566,349,0 chrXVI 482397 . C G 3768.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.43;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3768,379,0 chrXVI 482429 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=3.010;HaplotypeScore=13.6982;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.515;QD=23.15;ReadPosRankSum=2.415;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3334,345,0 chrXVI 482737 . G C 2858 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.43;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2891,286,0 chrXVI 482770 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=97.5147;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.03;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2620,255,0 chrXVI 482968 . T G 4638.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.6498;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.19;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4638,478,0 chrXVI 483004 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.35;SB=-3.577e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:4679,466,0 chrXVI 483027 . A T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=17.02;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4137,409,0 chrXVI 483116 . G A 5818.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.97;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5818,559,0 chrXVI 483298 . T G 4849.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.00;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4849,484,0 chrXVI 483319 . T A 4248.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.56;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4248,412,0 chrXVI 483355 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=201;Dels=0.00;FS=10.419;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.136;QD=18.90;ReadPosRankSum=2.934;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:3798,399,0 chrXVI 483359 . G T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.58;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,193:198:99:4074,397,0 chrXVI 483739 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=262;Dels=0.00;FS=6.449;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.127;QD=22.11;ReadPosRankSum=2.402;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5792,595,0 chrXVI 483904 . T C 6308.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.6289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-3.213e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6308,634,0 chrXVI 483961 . G C 5750.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5728;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.16;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5750,580,0 chrXVI 484285 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.84;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4844,457,0 chrXVI 484327 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.4361;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.692;QD=24.58;ReadPosRankSum=1.672;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4277,424,0 chrXVI 484357 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.9015;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.37;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4436,427,0 chrXVI 484429 . T C 5928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=236;Dels=0.00;FS=8.296;HaplotypeScore=20.5263;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.053;QD=25.12;ReadPosRankSum=3.409;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:4,232:236:99:5928,592,0 chrXVI 484903 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7824;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.28;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4434,442,0 chrXVI 485045 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.1650;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.49;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4461,430,0 chrXVI 485132 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.594;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.446;QD=21.77;ReadPosRankSum=1.711;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3679,358,0 chrXVI 485137 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.718;QD=21.96;ReadPosRankSum=1.711;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3623,364,0 chrXVI 485355 . T C 5538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=214;Dels=0.00;FS=8.398;HaplotypeScore=12.6080;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.517;QD=25.88;ReadPosRankSum=3.386;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:4,208:214:99:5538,547,0 chrXVI 485697 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.13;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2518,246,0 chrXVI 485698 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.233;QD=23.19;ReadPosRankSum=2.439;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:4,98:103:99:2422,243,0 chrXVI 485788 . T G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.7739;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-0.265;QD=25.08;ReadPosRankSum=1.708;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3612,373,0 chrXVI 485801 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=25.47;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3515,337,0 chrXVI 485873 . T G 1911 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;QD=24.19;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1944,192,0 chrXVI 485898 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.95;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1811,174,0 chrXVI 486011 . C A 1776 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.93;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1809,177,0 chrXVI 486231 . G T 1825 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.52;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1858,180,0 chrXVI 486307 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=27.74;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2363,225,0 chrXVI 486334 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.10;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2347,243,0 chrXVI 486489 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.257;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.459;QD=26.13;ReadPosRankSum=1.678;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3344,325,0 chrXVI 486595 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=6.653;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.008;QD=24.23;ReadPosRankSum=2.417;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3683,370,0 chrXVI 486612 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=154;Dels=0.00;FS=11.069;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.296;QD=22.98;ReadPosRankSum=2.520;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3539,369,0 chrXVI 486646 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.19;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3325,319,0 chrXVI 486789 . T G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.327;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.171;QD=24.63;ReadPosRankSum=1.708;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,141:147:99:3620,367,0 chrXVI 486969 . A T 3141 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.17;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3174,304,0 chrXVI 487204 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=65.9230;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.76;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2138,207,0 chrXVI 487322 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.64;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2289,217,0 chrXVI 487504 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=2.706;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.573;QD=27.39;ReadPosRankSum=2.412;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3588,355,0 chrXVI 488115 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.53;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2731,273,0 chrXVI 488130 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=25.76;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2970,283,0 chrXVI 488493 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.68;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2526,249,0 chrXVI 488578 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.27;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1837,213,0 chrXVI 488646 . G T 1329 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.73;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1362,132,0 chrXVI 488655 . A C 1230 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.21;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1263,126,0 chrXVI 489145 . G A 5739.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.45;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5739,562,0 chrXVI 489307 . T A 5642.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=27.13;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5642,535,0 chrXVI 489538 . T C 5438.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=26.40;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5438,526,0 chrXVI 489543 . G A 5507.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=26.73;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5507,520,0 chrXVI 489607 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4489;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.88;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4038,382,0 chrXVI 490120 . C T 948 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=8.70;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:93:981,93,0 chrXVI 490131 . G T 1388 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=10.76;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1421,150,0 chrXVI 490135 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=11.71;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1626,159,0 chrXVI 490450 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3316,334,0 chrXVI 490554 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.03;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2961,298,0 chrXVI 490756 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.02;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3593,358,0 chrXVI 490906 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=28.11;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3683,361,0 chrXVI 491068 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.8268;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.80;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5006,481,0 chrXVI 491113 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.22;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4698,469,0 chrXVI 491133 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.9460;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.81;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4500,436,0 chrXVI 491370 . T G 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=3.372;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.000;QD=23.27;ReadPosRankSum=1.715;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4677,466,0 chrXVI 491388 . G A 4785.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.05;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4785,451,0 chrXVI 491486 . G C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.2517;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.72;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3583,370,0 chrXVI 491534 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.71;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4320,418,0 chrXVI 492354 . C T 6494.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.5938;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.51;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:6494,619,0 chrXVI 493097 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.19;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4975,481,0 chrXVI 493521 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=4.297;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.088;QD=26.15;ReadPosRankSum=1.665;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4080,403,0 chrXVI 493908 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.23;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3237,325,0 chrXVI 494922 . T C 5059.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=19.7636;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.42;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5059,505,0 chrXVI 495156 . A G 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.131;QD=25.47;ReadPosRankSum=2.422;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4534,445,0 chrXVI 495265 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=25.29;ReadPosRankSum=2.933;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3414,346,0 chrXVI 495832 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2718,259,0 chrXVI 495890 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.90;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3704,352,0 chrXVI 496405 . T C 5830.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.24;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5830,580,0 chrXVI 496486 . A G 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=209;Dels=0.00;FS=6.345;HaplotypeScore=17.3168;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.024;QD=24.78;ReadPosRankSum=2.426;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:5178,508,0 chrXVI 496633 . T C 5755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.9811;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.767;QD=25.81;ReadPosRankSum=1.700;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:5755,580,0 chrXVI 496734 . A G 5984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=222;Dels=0.00;FS=3.089;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.967;QD=26.95;ReadPosRankSum=1.701;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5984,589,0 chrXVI 497140 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.291;QD=26.06;ReadPosRankSum=1.688;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4091,406,0 chrXVI 497425 . C T 6135.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.9632;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.51;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:6135,595,0 chrXVI 497758 . T C 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.2151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.262;QD=26.05;ReadPosRankSum=1.698;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:5367,520,0 chrXVI 498269 . C T 5554.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.20;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5554,541,0 chrXVI 498437 . A G 7171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=293;Dels=0.00;FS=13.638;HaplotypeScore=22.3923;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.243;QD=24.47;ReadPosRankSum=3.157;SB=-3.828e+03 GT:AD:DP:GQ:PL 1/1:4,288:293:99:7171,718,0 chrXVI 498617 . T C 6048.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.5327;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.20;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:6048,601,0 chrXVI 498689 . C T 5889.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.89;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:5889,568,0 chrXVI 498788 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=166;Dels=0.00;FS=9.111;HaplotypeScore=14.7773;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.327;QD=25.84;ReadPosRankSum=2.958;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:4289,427,0 chrXVI 499073 . G A 5288.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=26.84;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5288,517,0 chrXVI 499315 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=18.1148;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3632,361,0 chrXVI 499388 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=26.15;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3425,334,0 chrXVI 499635 . C T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6783;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=24.34;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4236,403,0 chrXVI 499664 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;MQRankSum=-0.779;QD=19.31;ReadPosRankSum=1.710;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3123,307,0 chrXVI 499678 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=52.1649;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;QD=17.15;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2228,222,0 chrXVI 499684 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=101.1462;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=17.15;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2057,201,0 chrXVI 499691 . T C 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.913;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=102.3709;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=0.961;QD=6.80;ReadPosRankSum=-9.653;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:49,112:161:90:1128,90,0 chrXVI 499739 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.739;QD=15.97;ReadPosRankSum=1.707;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2221,216,0 chrXVI 500000 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.94;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2801,262,0 chrXVI 500007 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.59;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2934,277,0 chrXVI 500189 . A G 5110.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=27.62;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:5110,505,0 chrXVI 500244 . C T 5020.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=26.56;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:5020,475,0 chrXVI 500339 . T G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=24.98;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4121,406,0 chrXVI 500345 . T A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.66;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4105,385,0 chrXVI 500351 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=24.13;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3885,364,0 chrXVI 500426 . C G 3131 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.69;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3164,322,0 chrXVI 500683 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=27.11;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5097,493,0 chrXVI 500726 . A C 5055.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=26.06;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:5055,502,0 chrXVI 500964 . G T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.5805;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=23.21;SB=-3.380e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5314,514,0 chrXVI 500975 . G C 5306.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=22.39;SB=-3.367e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5306,520,0 chrXVI 500988 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=20.89;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4553,457,0 chrXVI 501255 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=1.623;QD=23.46;ReadPosRankSum=1.710;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3753,382,0 chrXVI 501323 . T A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.42;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4963,475,0 chrXVI 501575 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.07;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4087,391,0 chrXVI 501709 . G C 4827.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2401;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.52;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:4827,481,0 chrXVI 501909 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=26.46;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4340,418,0 chrXVI 502052 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=27.70;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3740,358,0 chrXVI 502088 . C A 2303 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.26;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2336,240,0 chrXVI 502118 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.14;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1503,147,0 chrXVI 502255 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.92;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1330,129,0 chrXVI 502697 . G A 311 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=16.8359;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=2.85;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:36:344,36,0 chrXVI 503041 . A T 4715.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.64;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4715,454,0 chrXVI 503157 . C G 5113.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.7538;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.31;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5113,520,0 chrXVI 503305 . A C 2819 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=26.10;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2852,274,0 chrXVI 503313 . A G 2570 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.926;QD=24.25;ReadPosRankSum=2.403;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2603,256,0 chrXVI 503314 . A G 2516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.133;QD=24.19;ReadPosRankSum=1.699;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2549,255,0 chrXVI 503488 . C A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=30.66;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3557,337,0 chrXVI 503888 . T C 5219.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5219,538,0 chrXVI 504173 . G T 2995 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.04;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3028,289,0 chrXVI 504262 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=24.78;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3444,325,0 chrXVI 504270 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.528;QD=23.12;ReadPosRankSum=1.707;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3201,316,0 chrXVI 504666 . G A 5270.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.83;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5270,514,0 chrXVI 505150 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5639;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.38;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3878,379,0 chrXVI 505698 . C G 4479.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0279;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.02;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4479,448,0 chrXVI 505721 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.226;QD=24.83;ReadPosRankSum=1.692;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4246,421,0 chrXVI 505749 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=165;Dels=0.00;FS=3.032;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.514;QD=23.13;ReadPosRankSum=2.404;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,158:165:99:3816,382,0 chrXVI 505836 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3951,406,0 chrXVI 505893 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.01;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:5019,484,0 chrXVI 506058 . T G 6591.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.06;SB=-3.712e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6591,661,0 chrXVI 506129 . T C 6355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=243;Dels=0.00;FS=2.426;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.380;QD=26.15;ReadPosRankSum=1.933;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:3,235:243:99:6355,622,0 chrXVI 506265 . C A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=24.77;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4286,400,0 chrXVI 506274 . A C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.54;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3978,406,0 chrXVI 506349 . G T 5404.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.9207;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=27.29;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5404,514,0 chrXVI 506806 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=25.82;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3796,367,0 chrXVI 507005 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=22.17;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3725,375,0 chrXVI 507023 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=20.70;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3829,387,0 chrXVI 507026 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.21;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3901,405,0 chrXVI 507047 . A C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=216;Dels=0.00;FS=5.843;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-1.042;QD=21.63;ReadPosRankSum=2.911;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:3,210:216:99:4672,469,0 chrXVI 507169 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=158;Dels=0.00;FS=6.939;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.547;QD=24.00;ReadPosRankSum=2.386;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3792,381,0 chrXVI 507218 . C A 3619.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=21.67;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3619,357,0 chrXVI 507220 . A G 3439.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=165;Dels=0.00;FS=6.061;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.772;QD=20.84;ReadPosRankSum=2.957;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3439,345,0 chrXVI 507225 . A G 3463.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-0.508;QD=20.49;ReadPosRankSum=1.670;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3463,363,0 chrXVI 507326 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.2245;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.52;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3872,379,0 chrXVI 507401 . G C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.18;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3852,388,0 chrXVI 507608 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=6.389;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.120;QD=23.03;ReadPosRankSum=2.376;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3096,324,0 chrXVI 507635 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.054;QD=24.50;ReadPosRankSum=1.707;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3406,337,0 chrXVI 507830 . G C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=26.35;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4216,412,0 chrXVI 507854 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.82;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3401,337,0 chrXVI 507917 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.60;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1722,174,0 chrXVI 508199 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.26;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3985,379,0 chrXVI 508243 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.26;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3789,373,0 chrXVI 508697 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=23.20;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2863,268,0 chrXVI 508709 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.10;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2670,256,0 chrXVI 508976 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.99;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3499,340,0 chrXVI 509084 . G A 4241.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8709;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.51;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4241,412,0 chrXVI 509658 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9860;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.75;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3330,316,0 chrXVI 509810 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=25.32;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3671,358,0 chrXVI 509832 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.87;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3098,298,0 chrXVI 509846 . A G 2940 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9855;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.62;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2973,292,0 chrXVI 510020 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=25.93;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3371,334,0 chrXVI 510238 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=26.90;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2373,229,0 chrXVI 510285 . G T 2142 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.20;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2175,210,0 chrXVI 510291 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=25.11;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2218,222,0 chrXVI 510328 . T A 2417 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=26.56;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2450,235,0 chrXVI 510355 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.51;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2290,231,0 chrXVI 510403 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=77;Dels=0.00;FS=6.083;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.408;QD=22.08;ReadPosRankSum=2.909;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1733,171,0 chrXVI 510469 . A T 1505 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.95;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1538,147,0 chrXVI 510522 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=26.58;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1734,177,0 chrXVI 510564 . T A 1540 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=25.25;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1573,150,0 chrXVI 510580 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=23.15;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1561,150,0 chrXVI 510650 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=11.9166;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.85;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:961,102,0 chrXVI 510652 . T C 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=6.198;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-1.039;QD=18.72;ReadPosRankSum=1.663;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:969,105,0 chrXVI 510663 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=17.98;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1166,117,0 chrXVI 510713 . A T 2494 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.94;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2527,241,0 chrXVI 510773 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=27.56;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3230,310,0 chrXVI 510816 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=27.74;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3468,328,0 chrXVI 510985 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=2.949;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.517;QD=24.76;ReadPosRankSum=2.399;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3640,364,0 chrXVI 511038 . C T 4979.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.97;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4979,478,0 chrXVI 511406 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.236;QD=24.26;ReadPosRankSum=1.704;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3065,310,0 chrXVI 511425 . T A 2425 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=25.53;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2458,235,0 chrXVI 511469 . A T 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.866;QD=22.79;ReadPosRankSum=1.687;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1765,171,0 chrXVI 511583 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=23.93;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1804,189,0 chrXVI 511623 . T A 706 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.7642;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=21.39;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:739,75,0 chrXVI 511625 . C T 699 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=23.30;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:30:75:732,75,0 chrXVI 511628 . T G 654 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=23.36;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:687,72,0 chrXVI 511707 . C G 536 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.33;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:57:569,57,0 chrXVI 511744 . T A 454 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=15.66;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:48:487,48,0 chrXVI 511751 . A C 492 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=9.165;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-0.998;QD=14.91;ReadPosRankSum=1.628;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:54:525,54,0 chrXVI 511752 . A C 518 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=16.19;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:57:551,57,0 chrXVI 511769 . T A 635 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.14;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:668,66,0 chrXVI 511809 . A T 1382 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.29;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1415,141,0 chrXVI 511842 . C A 1590 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.13;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1623,156,0 chrXVI 511946 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=25.34;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1528,144,0 chrXVI 511983 . T A 2108 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=25.71;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2141,207,0 chrXVI 512028 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=25.58;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2744,276,0 chrXVI 512102 . T A 1162 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=23.71;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1195,114,0 chrXVI 512105 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.74;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1033,105,0 chrXVI 512148 . T C 831 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.46;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:87:864,87,0 chrXVI 512216 . A C 696 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.096;QD=19.33;ReadPosRankSum=1.636;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:72:729,72,0 chrXVI 512235 . T C 551 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.68;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:584,57,0 chrXVI 512517 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.35;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3123,292,0 chrXVI 512760 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=116;Dels=0.00;FS=3.049;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.025;QD=24.01;ReadPosRankSum=2.385;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2818,283,0 chrXVI 512940 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2415,234,0 chrXVI 513417 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7596;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.53;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3122,316,0 chrXVI 513619 . G A 6230.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=20.5897;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.09;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:6230,592,0 chrXVI 513862 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.27;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3979,400,0 chrXVI 514290 . T A 2724 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2757,282,0 chrXVI 514323 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2356,225,0 chrXVI 514359 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.024;QD=26.71;ReadPosRankSum=1.693;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2410,234,0 chrXVI 514428 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=13.105;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.403;QD=24.35;ReadPosRankSum=2.867;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:2054,210,0 chrXVI 514493 . T C 2794 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.36;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2827,286,0 chrXVI 514583 . A G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=5.389;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.021;QD=25.20;ReadPosRankSum=1.690;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2150,222,0 chrXVI 514990 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=26.40;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3749,361,0 chrXVI 515057 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=143;Dels=0.00;FS=3.262;HaplotypeScore=14.3751;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.464;QD=24.38;ReadPosRankSum=1.708;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3486,343,0 chrXVI 515138 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=8.286;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.124;QD=25.53;ReadPosRankSum=2.392;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3293,331,0 chrXVI 515185 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=23.32;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3381,322,0 chrXVI 515189 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=23.22;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3390,322,0 chrXVI 515196 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=145;Dels=0.00;FS=5.539;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.396;QD=19.84;ReadPosRankSum=2.910;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2910,292,0 chrXVI 515243 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.419;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.200;QD=21.34;ReadPosRankSum=1.710;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3329,334,0 chrXVI 515495 . C G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.58;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3456,343,0 chrXVI 516047 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.407;QD=27.61;ReadPosRankSum=1.702;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3208,322,0 chrXVI 516356 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.16;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4212,397,0 chrXVI 516710 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.522;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.463;QD=24.03;ReadPosRankSum=1.694;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2196,219,0 chrXVI 516780 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.144;QD=24.69;ReadPosRankSum=1.703;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3020,304,0 chrXVI 516903 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.75;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3200,304,0 chrXVI 517099 . C G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.01;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4052,400,0 chrXVI 517188 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.09;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3902,379,0 chrXVI 517281 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=177;Dels=0.00;FS=2.919;HaplotypeScore=8.7174;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.116;QD=24.53;ReadPosRankSum=2.366;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4341,433,0 chrXVI 517540 . A G 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=207;Dels=0.00;FS=6.663;HaplotypeScore=21.9450;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.643;QD=24.81;ReadPosRankSum=2.329;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:5136,517,0 chrXVI 517615 . G T 9135.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=21.2284;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.27;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:9135,908,0 chrXVI 517746 . A G 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=233;Dels=0.00;FS=6.386;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.845;QD=25.04;ReadPosRankSum=2.375;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5835,583,0 chrXVI 517881 . G A 7648.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.7721;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.65;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:7648,743,0 chrXVI 517980 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.60;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:5773,559,0 chrXVI 518014 . C G 5010.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.09;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5010,502,0 chrXVI 518057 . A T 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=2.997;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.245;QD=25.67;ReadPosRankSum=2.337;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3928,373,0 chrXVI 518836 . A G 6639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=265;Dels=0.00;FS=5.620;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.491;QD=25.05;ReadPosRankSum=2.966;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:3,261:265:99:6639,658,0 chrXVI 519322 . A G 6121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=241;Dels=0.00;FS=3.294;HaplotypeScore=15.2716;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.855;QD=25.40;ReadPosRankSum=1.703;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:1,236:241:99:6121,598,0 chrXVI 519385 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.73;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5907,571,0 chrXVI 520400 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.440;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.754;QD=23.68;ReadPosRankSum=1.691;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4025,391,0 chrXVI 520404 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.02;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3766,361,0 chrXVI 520764 . G A 272 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:305,30,0 chrXVI 520832 . T C 315 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:348,33,0 chrXVI 521292 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.764;QD=27.53;ReadPosRankSum=2.399;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2703,268,0 chrXVI 521626 . C A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.0952;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.71;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4730,460,0 chrXVI 521945 . C G 7448.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=26.32;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:7448,733,0 chrXVI 522079 . A C 1697.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.939;DP=355;Dels=0.02;FS=24.325;HaplotypeScore=56.2473;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=1;MQRankSum=-5.649;QD=4.78;ReadPosRankSum=1.185;SB=-1.863e+03 GT:AD:DP:GQ:PL 0/1:178,167:347:99:1727,0,1223 chrXVI 522081 . T A 1720.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.132;DP=354;Dels=0.05;FS=25.104;HaplotypeScore=190.9958;MLEAC=1;MLEAF=0.500;MQ=42.27;MQ0=1;MQRankSum=-3.201;QD=4.86;ReadPosRankSum=0.602;SB=-1.851e+03 GT:AD:DP:GQ:PL 0/1:173,165:338:99:1750,0,1172 chrXVI 522090 . G A 1477.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.042;DP=353;Dels=0.01;FS=10.791;HaplotypeScore=80.0021;MLEAC=1;MLEAF=0.500;MQ=42.64;MQ0=0;MQRankSum=-8.507;QD=4.18;ReadPosRankSum=-2.432;SB=-1.396e+03 GT:AD:DP:GQ:PL 0/1:206,142:348:99:1507,0,1902 chrXVI 522094 . A C 511.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.693;DP=298;Dels=0.02;FS=19.518;HaplotypeScore=59.4665;MLEAC=1;MLEAF=0.500;MQ=44.18;MQ0=0;MQRankSum=-6.820;QD=1.71;ReadPosRankSum=0.712;SB=-7.720e+02 GT:AD:DP:GQ:PL 0/1:208,85:293:99:541,0,2270 chrXVI 522096 . T G 379.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DP=296;Dels=0.02;FS=15.064;HaplotypeScore=58.6778;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=0;MQRankSum=-7.138;QD=1.28;ReadPosRankSum=-0.334;SB=-6.870e+02 GT:AD:DP:GQ:PL 0/1:208,82:291:99:409,0,2223 chrXVI 522099 . A G 333.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.435;DP=301;Dels=0.00;FS=23.114;HaplotypeScore=60.5335;MLEAC=1;MLEAF=0.500;MQ=44.24;MQ0=0;MQRankSum=-9.374;QD=1.11;ReadPosRankSum=0.899;SB=-6.360e+02 GT:AD:DP:GQ:PL 0/1:226,74:301:99:363,0,2430 chrXVI 522102 . A G 199.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DP=303;Dels=0.00;FS=21.164;HaplotypeScore=43.7596;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=0;MQRankSum=-7.233;QD=0.66;ReadPosRankSum=-0.708;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:229,73:303:99:229,0,2638 chrXVI 522104 . C A 119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.896;DP=300;Dels=0.00;FS=16.693;HaplotypeScore=39.0187;MLEAC=1;MLEAF=0.500;MQ=45.71;MQ0=0;MQRankSum=-8.378;QD=0.40;ReadPosRankSum=-2.962;SB=-7.120e+02 GT:AD:DP:GQ:PL 0/1:220,79:300:99:149,0,2462 chrXVI 522105 . A G 113.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.612;DP=299;Dels=0.00;FS=21.193;HaplotypeScore=35.0183;MLEAC=1;MLEAF=0.500;MQ=45.76;MQ0=0;MQRankSum=-8.935;QD=0.38;ReadPosRankSum=-2.590;SB=-6.300e+02 GT:AD:DP:GQ:PL 0/1:226,73:299:99:143,0,2670 chrXVI 522108 . A G 277.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.962;DP=301;Dels=0.00;FS=20.766;HaplotypeScore=29.8072;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=0;MQRankSum=-9.431;QD=0.92;ReadPosRankSum=-4.803;SB=-6.340e+02 GT:AD:DP:GQ:PL 0/1:223,78:301:99:307,0,2976 chrXVI 522118 . C A 51.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.094;DP=272;Dels=0.00;FS=22.085;HaplotypeScore=27.2888;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=0;MQRankSum=-8.553;QD=0.19;ReadPosRankSum=-6.220;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:225,47:272:81:81,0,3398 chrXVI 523110 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3517,343,0 chrXVI 523433 . C G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.21;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3995,391,0 chrXVI 523446 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=24.49;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3943,382,0 chrXVI 523583 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.05;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3465,346,0 chrXVI 523689 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.87;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2819,268,0 chrXVI 523692 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=7.231;HaplotypeScore=4.0995;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.978;QD=23.43;ReadPosRankSum=2.406;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2681,270,0 chrXVI 523749 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=7.360;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.629;QD=22.04;ReadPosRankSum=2.208;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2281,228,0 chrXVI 526392 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3747,376,0 chrXVI 526767 . A G 5530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=4.296;HaplotypeScore=10.6119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.593;QD=27.51;ReadPosRankSum=1.715;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:5530,556,0 chrXVI 527231 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4921,466,0 chrXVI 527307 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2285;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.90;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4066,397,0 chrXVI 528593 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.410;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.761;QD=24.57;ReadPosRankSum=1.675;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4497,457,0 chrXVI 529663 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2949,280,0 chrXVI 530286 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.23;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3987,415,0 chrXVI 530370 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.2667;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.02;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:4129,415,0 chrXVI 530807 . G C 4281.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4281,421,0 chrXVI 531193 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=3.044;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.861;QD=24.89;ReadPosRankSum=2.360;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2796,271,0 chrXVI 531957 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.83;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3595,355,0 chrXVI 532319 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.598;QD=26.05;ReadPosRankSum=1.701;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2977,289,0 chrXVI 533286 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.143;QD=24.25;ReadPosRankSum=1.709;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3710,361,0 chrXVI 533561 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.31;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1349,129,0 chrXVI 533565 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.95;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1398,132,0 chrXVI 533888 . T G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.33;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3503,343,0 chrXVI 534427 . A C 5098.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.75;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5098,514,0 chrXVI 534572 . C T 4475.01 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=21.94;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4475,442,0 chrXVI 534574 . A G 4540.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.490;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.456;QD=22.59;ReadPosRankSum=1.715;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4540,439,0 chrXVI 534581 . T C 4354.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=212;Dels=0.00;FS=8.710;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.366;QD=20.54;ReadPosRankSum=3.329;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:4354,439,0 chrXVI 534748 . A T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.321;QD=20.43;ReadPosRankSum=2.353;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4189,471,0 chrXVI 534749 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.01;FS=0.000;HaplotypeScore=3.5646;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.81;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4225,474,0 chrXVI 534894 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=17.2951;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=25.31;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4758,478,0 chrXVI 535073 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4489,430,0 chrXVI 535979 . G T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.22;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3566,340,0 chrXVI 536747 . T C 959.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332;DP=188;Dels=0.00;FS=6.258;HaplotypeScore=123.0949;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=0;MQRankSum=1.700;QD=5.10;ReadPosRankSum=-0.493;SB=-6.330e+02 GT:AD:DP:GQ:PL 0/1:97,89:188:99:989,0,382 chrXVI 536756 . C T 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.586;DP=192;Dels=0.03;FS=47.602;HaplotypeScore=119.5897;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.185;QD=8.73;ReadPosRankSum=4.496;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:25,158:186:55:1709,55,0 chrXVI 538056 . A T 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=122;Dels=0.00;FS=2.989;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.675;QD=24.23;ReadPosRankSum=2.369;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2989,289,0 chrXVI 538772 . A T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.91;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3550,337,0 chrXVI 538784 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=2.906;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.029;QD=24.39;ReadPosRankSum=2.373;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3179,319,0 chrXVI 539260 . T C 5221.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:5221,517,0 chrXVI 540311 . C G 4911.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.26;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4911,487,0 chrXVI 540819 . A T 2773 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.76;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2806,271,0 chrXVI 542298 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.75;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4157,418,0 chrXVI 542310 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.63;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4017,385,0 chrXVI 543428 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.60;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3643,355,0 chrXVI 543686 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=124;Dels=0.00;FS=3.039;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.470;QD=27.35;ReadPosRankSum=2.410;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:3392,334,0 chrXVI 543937 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=134;Dels=0.00;FS=6.121;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.254;QD=27.07;ReadPosRankSum=2.916;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,128:134:99:3628,361,0 chrXVI 543981 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.78;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3764,373,0 chrXVI 547624 . A G 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=6.913;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.317;QD=25.79;ReadPosRankSum=2.398;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4977,484,0 chrXVI 547738 . T G 5913.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.64;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5913,595,0 chrXVI 549254 . A G 4820.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.48;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4820,484,0 chrXVI 549906 . G C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.97;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3479,346,0 chrXVI 550760 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.138;QD=26.70;ReadPosRankSum=2.340;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3578,361,0 chrXVI 550866 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4723,472,0 chrXVI 552585 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.06;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5050,499,0 chrXVI 553465 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.70;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3822,367,0 chrXVI 554350 . C A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3910,376,0 chrXVI 554599 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=163;Dels=0.00;FS=4.333;HaplotypeScore=13.7923;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.234;QD=24.86;ReadPosRankSum=1.710;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:4052,415,0 chrXVI 554689 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4991,502,0 chrXVI 555419 . G C 2868 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2901,294,0 chrXVI 555508 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2081,201,0 chrXVI 556159 . A G 1464 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1497,153,0 chrXVI 556778 . C A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.89;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4306,427,0 chrXVI 556814 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.9276;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4194,427,0 chrXVI 560045 . G T 990 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1023,105,0 chrXVI 560326 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.29;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2152,216,0 chrXVI 561434 . T A 2099 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2132,204,0 chrXVI 561710 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.023;QD=24.41;ReadPosRankSum=1.687;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3759,373,0 chrXVI 564703 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=8.701;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.292;QD=21.29;ReadPosRankSum=2.414;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2992,303,0 chrXVI 564724 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=8.988;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.906;QD=21.61;ReadPosRankSum=2.414;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2993,295,0 chrXVI 566170 . A T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.49;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3478,331,0 chrXVI 566316 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.07;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3736,370,0 chrXVI 566571 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.86;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3411,334,0 chrXVI 566724 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=3.043;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.670;QD=24.65;ReadPosRankSum=2.410;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3090,307,0 chrXVI 567686 . C G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3912,397,0 chrXVI 567809 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.802;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.680;QD=26.00;ReadPosRankSum=1.706;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3484,358,0 chrXVI 568866 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.996;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.461;QD=24.71;ReadPosRankSum=2.359;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3361,334,0 chrXVI 569064 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=3.203;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.889;QD=25.75;ReadPosRankSum=1.702;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:3046,312,0 chrXVI 571946 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=27.27;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3845,376,0 chrXVI 574500 . G A 5294.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.40;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5294,538,0 chrXVI 581317 . C A 1527 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.24;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1560,150,0 chrXVI 581662 . T G 4167.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.78;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4167,409,0 chrXVI 581829 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.630;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.392;QD=24.62;ReadPosRankSum=1.712;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4284,427,0 chrXVI 584269 . T A 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.605;QD=26.60;ReadPosRankSum=1.677;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3378,322,0 chrXVI 584312 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.19;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4078,388,0 chrXVI 584582 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.5029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4405,442,0 chrXVI 585153 . A G 6614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=261;Dels=0.00;FS=2.391;HaplotypeScore=18.0185;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.652;QD=25.34;ReadPosRankSum=3.427;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:4,256:261:99:6614,652,0 chrXVI 586856 . G C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=23.94;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3472,343,0 chrXVI 586864 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=24.31;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3477,343,0 chrXVI 586960 . A C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.4100;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.171;QD=24.90;ReadPosRankSum=1.689;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4033,394,0 chrXVI 587188 . G T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9761;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.34;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4477,421,0 chrXVI 587583 . G C 3763.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.27;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3763,370,0 chrXVI 587661 . A T 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.435;QD=26.64;ReadPosRankSum=1.711;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4342,421,0 chrXVI 588991 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.014;QD=24.79;ReadPosRankSum=1.676;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3107,310,0 chrXVI 591000 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.290;QD=22.24;ReadPosRankSum=1.689;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3603,352,0 chrXVI 591766 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.79;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:706,69,0 chrXVI 591786 . C A 925 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.56;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:958,93,0 chrXVI 592674 . T C 6726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=275;Dels=0.00;FS=3.530;HaplotypeScore=19.1354;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.291;QD=24.46;ReadPosRankSum=1.707;SB=-3.568e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:6726,667,0 chrXVI 593262 . A T 1289 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=10.5227;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.79;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1322,129,0 chrXVI 593438 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.142;QD=23.26;ReadPosRankSum=1.693;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2080,207,0 chrXVI 595591 . C T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.70;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5606,529,0 chrXVI 596413 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8965;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.14;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4157,406,0 chrXVI 599378 . G A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.55;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4270,406,0 chrXVI 599564 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2808,277,0 chrXVI 600285 . T G 1747 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.07;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1780,174,0 chrXVI 600385 . A G 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.358;QD=25.43;ReadPosRankSum=1.673;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1508,153,0 chrXVI 600519 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.55;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1089,105,0 chrXVI 600670 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.78;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1846,177,0 chrXVI 602166 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.824;QD=26.05;ReadPosRankSum=2.359;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2872,283,0 chrXVI 602623 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2420,235,0 chrXVI 603616 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.295;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.530;QD=24.62;ReadPosRankSum=-0.153;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3669,339,0 chrXVI 604022 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.17;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2934,292,0 chrXVI 604091 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2844;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.31;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3282,319,0 chrXVI 604106 . G T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.32;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3494,328,0 chrXVI 604897 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.50;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4182,415,0 chrXVI 605672 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3486,340,0 chrXVI 606419 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=167;Dels=0.04;FS=2.962;HaplotypeScore=23.2642;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.518;QD=21.06;ReadPosRankSum=2.403;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3517,358,0 chrXVI 606814 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=25.50;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4768,457,0 chrXVI 606832 . C G 4561.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.39;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4561,448,0 chrXVI 607353 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.25;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1893,198,0 chrXVI 607854 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2613;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.73;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1775,180,0 chrXVI 608364 . T C 4850.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.94;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4850,472,0 chrXVI 608450 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.93;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3789,376,0 chrXVI 609546 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=174;Dels=0.00;FS=2.982;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=1.300;QD=17.30;ReadPosRankSum=2.421;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:2,169:174:99:3044,295,0 chrXVI 609547 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.643;QD=17.40;ReadPosRankSum=1.633;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3095,301,0 chrXVI 610056 . C T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.6073;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.58;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4940,472,0 chrXVI 610123 . A T 6526.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.69;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6526,628,0 chrXVI 610143 . G T 6799.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.6580;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=26.15;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6799,655,0 chrXVI 610223 . C T 5543.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.5998;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.90;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5543,541,0 chrXVI 610298 . G A 5617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.668;QD=26.00;ReadPosRankSum=0.401;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5617,547,0 chrXVI 610743 . C A 6603.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.3329;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.22;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:6603,634,0 chrXVI 612448 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0096;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.51;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:5037,490,0 chrXVI 615470 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=27.81;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3560,337,0 chrXVI 616089 . G A 5119.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5119,520,0 chrXVI 616534 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2016,198,0 chrXVI 619798 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1189;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.54;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3047,295,0 chrXVI 620246 . A C 1031 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=24.4501;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.45;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1064,105,0 chrXVI 620602 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.67;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2495,241,0 chrXVI 620615 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.86;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2768,262,0 chrXVI 623271 . T A 1617 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1650,165,0 chrXVI 623824 . C G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3539,355,0 chrXVI 624238 . G C 5160.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5160,505,0 chrXVI 624739 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.15;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4561,442,0 chrXVI 625483 . C A 2196 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3967;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.12;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2229,213,0 chrXVI 625519 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.72;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1717,168,0 chrXVI 626374 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.82;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3460,337,0 chrXVI 627247 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=6.231;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.125;QD=26.67;ReadPosRankSum=2.399;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3920,388,0 chrXVI 627372 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.195;QD=24.60;ReadPosRankSum=1.702;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2887,283,0 chrXVI 627426 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2970,298,0 chrXVI 627537 . C G 2761 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.20;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2794,294,0 chrXVI 627554 . G T 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.8800;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.276;QD=21.64;ReadPosRankSum=-0.243;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2522,243,0 chrXVI 629082 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3162,310,0 chrXVI 629640 . G C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=27.24;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3568,352,0 chrXVI 629712 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.04;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3182,310,0 chrXVI 629722 . A C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.114;QD=21.01;ReadPosRankSum=1.656;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2933,297,0 chrXVI 630078 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.344;QD=25.41;ReadPosRankSum=1.706;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3430,349,0 chrXVI 631328 . A C 526.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;DP=124;Dels=0.00;FS=26.734;HaplotypeScore=6.9515;MLEAC=1;MLEAF=0.500;MQ=35.35;MQ0=0;MQRankSum=0.668;QD=4.24;ReadPosRankSum=-1.852;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:93,30:124:75:556,0,75 chrXVI 631331 . T A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.358;DP=101;Dels=0.00;FS=1.993;HaplotypeScore=5.4836;MLEAC=1;MLEAF=0.500;MQ=35.50;MQ0=0;MQRankSum=3.358;QD=0.12;ReadPosRankSum=-3.703;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:96,5:101:42:42,0,137 chrXVI 631703 . C G 4157.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.04;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4157,424,0 chrXVI 631883 . A T 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.042;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.253;QD=25.33;ReadPosRankSum=2.412;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3318,331,0 chrXVI 631944 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=28.37;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3211,304,0 chrXVI 635876 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=165;Dels=0.00;FS=5.990;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.377;QD=25.59;ReadPosRankSum=2.895;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:4223,421,0 chrXVI 637935 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3223,316,0 chrXVI 638064 . G T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4183,418,0 chrXVI 638486 . T C 5080.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8885;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.53;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5080,502,0 chrXVI 640589 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=5.643;HaplotypeScore=24.0003;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.063;QD=21.90;ReadPosRankSum=1.712;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3876,405,0 chrXVI 640757 . G A 6867.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.0394;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.04;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6867,658,0 chrXVI 641565 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.70;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3655,361,0 chrXVI 647721 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4316,427,0 chrXVI 648617 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.62;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2722,267,0 chrXVI 650129 . T C 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.116;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=6.8468;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.302;QD=21.36;ReadPosRankSum=2.317;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,35:38:87:866,87,0 chrXVI 651288 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2751,285,0 chrXVI 653824 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.9273;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.66;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2503,243,0 chrXVI 655924 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=6.203;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.254;QD=26.88;ReadPosRankSum=2.391;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4543,442,0 chrXVI 657450 . G T 1829 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.39;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1862,183,0 chrXVI 659088 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=134;Dels=0.00;FS=7.585;HaplotypeScore=15.9212;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.047;QD=21.54;ReadPosRankSum=2.375;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2919,297,0 chrXVI 659394 . C T 5887.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5887,595,0 chrXVI 659469 . C G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6400;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.94;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4340,439,0 chrXVI 661094 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1732,171,0 chrXVI 661461 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.568;HaplotypeScore=7.2489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.981;QD=24.16;ReadPosRankSum=1.690;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4035,423,0 chrXVI 662450 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.35;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3125,298,0 chrXVI 662604 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.55;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2684,270,0 chrXVI 663036 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2652,259,0 chrXVI 664944 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.363;HaplotypeScore=12.3908;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.342;QD=24.27;ReadPosRankSum=1.171;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3470,337,0 chrXVI 665441 . A G 1934 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1967,192,0 chrXVI 665472 . T C 1578 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1611,165,0 chrXVI 665628 . T C 2029 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2062,198,0 chrXVI 665970 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=11.5710;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.69;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4564,451,0 chrXVI 666286 . T C 6096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.6243;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.870;QD=24.78;ReadPosRankSum=1.631;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:1,241:246:99:6096,613,0 chrXVI 666924 . T C 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=6.289;HaplotypeScore=8.5149;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.387;QD=24.90;ReadPosRankSum=2.395;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4506,463,0 chrXVI 668461 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=125;Dels=0.00;FS=5.404;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.228;QD=24.50;ReadPosRankSum=2.943;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:3095,307,0 chrXVI 669067 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.00;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3033,309,0 chrXVI 670717 . A G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.359;QD=27.10;ReadPosRankSum=1.596;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2851,280,0 chrXVI 673136 . A G 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.625;QD=25.94;ReadPosRankSum=1.697;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:5111,502,0 chrXVI 673518 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2529,244,0 chrXVI 675855 . A C 713 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.82;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:746,69,0 chrXVI 675869 . A C 761 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.03;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:794,78,0 chrXVI 676149 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.64;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4067,394,0 chrXVI 678569 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=177;Dels=0.00;FS=8.779;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.948;QD=25.45;ReadPosRankSum=3.340;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:4504,454,0 chrXVI 679094 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.148;QD=23.93;ReadPosRankSum=1.602;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3877,397,0 chrXVI 683346 . C A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0643;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.50;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3666,355,0 chrXVI 683503 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4676,454,0 chrXVI 683733 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.95;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4463,442,0 chrXVI 684065 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3242,322,0 chrXVI 684164 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.223;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.133;QD=25.77;ReadPosRankSum=1.710;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:4098,403,0 chrXVI 684434 . T C 604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.605;QD=20.83;ReadPosRankSum=-0.193;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:1,26:29:63:637,63,0 chrXVI 688677 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.67;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3570,343,0 chrXVI 688954 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3294,337,0 chrXVI 689032 . C A 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.359;QD=27.91;ReadPosRankSum=-0.204;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2908,252,0 chrXVI 689786 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=26.16;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3401,331,0 chrXVI 689835 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=26.70;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:4005,397,0 chrXVI 691402 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.6215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=22.70;ReadPosRankSum=1.505;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3837,385,0 chrXVI 691472 . G C 3645.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.5175;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.67;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3645,367,0 chrXVI 692056 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4026,409,0 chrXVI 693803 . A G 5121.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1401;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.67;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:5121,505,0 chrXVI 695201 . A C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.02;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3453,360,0 chrXVI 695787 . G C 4436.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.25;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:4436,439,0 chrXVI 697060 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.99;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:4170,397,0 chrXVI 697573 . A T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.67;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4294,406,0 chrXVI 697775 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.49;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4257,412,0 chrXVI 698565 . A G 1024 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.6436;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.33;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1057,108,0 chrXVI 698637 . A C 2627 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.55;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2660,259,0 chrXVI 700285 . T C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=6.179;HaplotypeScore=7.7514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.330;QD=21.75;ReadPosRankSum=1.639;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2513,241,0 chrXVI 700480 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=26.21;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1868,180,0 chrXVI 702662 . G C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.35;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3409,340,0 chrXVI 702709 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3378,340,0 chrXVI 702998 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=7.394;HaplotypeScore=10.4243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.040;QD=23.07;ReadPosRankSum=2.362;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3875,373,0 chrXVI 704396 . G C 5127.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.13;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5127,499,0 chrXVI 707772 . C A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.93;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4888,460,0 chrXVI 707796 . T A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=26.71;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4540,442,0 chrXVI 711113 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.29;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2642,259,0 chrXVI 711619 . C G 7435.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=13.5343;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.20;SB=-4.048e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:7435,736,0 chrXVI 714288 . G T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.74;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3513,355,0 chrXVI 716403 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.414;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.207;QD=27.77;ReadPosRankSum=-0.284;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3721,364,0 chrXVI 717249 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2789,268,0 chrXVI 718261 . G C 3603.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3603,352,0 chrXVI 718898 . T C 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.867;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.402;QD=26.77;ReadPosRankSum=2.401;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2737,268,0 chrXVI 720416 . C G 2988 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3021,295,0 chrXVI 720561 . C A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=27.31;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4479,427,0 chrXVI 720834 . A T 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.087;QD=22.95;ReadPosRankSum=2.255;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1777,171,0 chrXVI 721009 . T A 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.974;QD=25.52;ReadPosRankSum=1.678;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1666,168,0 chrXVI 722078 . C G 2808 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2841,283,0 chrXVI 724121 . A G 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=201;Dels=0.00;FS=2.561;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.020;QD=24.83;ReadPosRankSum=2.965;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4990,481,0 chrXVI 724279 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=162;Dels=0.00;FS=5.449;HaplotypeScore=6.9729;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.294;QD=20.98;ReadPosRankSum=2.881;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3399,340,0 chrXVI 724286 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7616;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.70;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3437,334,0 chrXVI 725082 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=4.518;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.647;QD=26.61;ReadPosRankSum=1.709;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3991,394,0 chrXVI 725291 . T A 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.906;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.773;QD=26.40;ReadPosRankSum=1.673;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4672,451,0 chrXVI 725710 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.12;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3987,382,0 chrXVI 726358 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=26.25;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3727,358,0 chrXVI 726386 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.94;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3051,295,0 chrXVI 726414 . A G 2889 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.07;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2922,286,0 chrXVI 726480 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.15;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3692,361,0 chrXVI 726636 . C G 3047 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.70;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3080,307,0 chrXVI 730292 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=81;Dels=0.00;FS=2.984;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.198;QD=26.36;ReadPosRankSum=2.389;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:2168,219,0 chrXVI 731073 . T C 2162 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.14;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2195,219,0 chrXVI 732154 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.88;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3649,349,0 chrXVI 733425 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.91;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1565,147,0 chrXVI 734148 . T A 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=226;Dels=0.00;FS=11.372;HaplotypeScore=26.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.471;QD=23.84;ReadPosRankSum=2.871;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:5388,529,0 chrXVI 734843 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=173;Dels=0.00;FS=2.977;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.793;QD=26.04;ReadPosRankSum=2.378;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4505,445,0 chrXVI 736455 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.034;QD=24.33;ReadPosRankSum=2.384;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2807,274,0 chrXVI 736469 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7750;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.39;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3008,301,0 chrXVI 736718 . C G 2668 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.68;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2701,271,0 chrXVI 737218 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.33;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3774,361,0 chrXVI 737361 . T G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.131;QD=26.27;ReadPosRankSum=-0.346;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3836,379,0 chrXVI 738117 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.84;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2984,289,0 chrXVI 738241 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=144;Dels=0.00;FS=11.040;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.393;QD=25.92;ReadPosRankSum=2.893;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3732,370,0 chrXVI 739339 . C T 4370.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4370,442,0 chrXVI 739738 . G A 5085.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.94;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5085,481,0 chrXVI 740140 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.3728;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.67;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4621,442,0 chrXVI 740758 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.3931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4306,424,0 chrXVI 741532 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.329;QD=26.21;ReadPosRankSum=1.672;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:3100,307,0 chrXVI 741944 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2999,301,0 chrXVI 742069 . T A 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=5.393;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.269;QD=25.17;ReadPosRankSum=1.655;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2298,219,0 chrXVI 742334 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=4.641;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.732;QD=25.89;ReadPosRankSum=1.679;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3417,346,0 chrXVI 742567 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.550;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.877;QD=25.00;ReadPosRankSum=1.687;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3875,394,0 chrXVI 743245 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.867;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.853;QD=24.40;ReadPosRankSum=1.706;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3294,331,0 chrXVI 743305 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.92;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3613,346,0 chrXVI 743344 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4624;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4116,397,0 chrXVI 743518 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.39;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4543,442,0 chrXVI 743973 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.06;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3706,370,0 chrXVI 744403 . A C 2457 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.40;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2490,252,0 chrXVI 744410 . A C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=3.310;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.445;QD=22.69;ReadPosRankSum=1.633;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2484,244,0 chrXVI 744459 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=26.10;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3837,376,0 chrXVI 744531 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=5.543;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.846;QD=27.47;ReadPosRankSum=1.705;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3543,361,0 chrXVI 744598 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.20;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3891,376,0 chrXVI 744935 . C A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4242,409,0 chrXVI 745879 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.12;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1836,177,0 chrXVI 745885 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.95;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1901,180,0 chrXVI 745923 . C A 2147 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.87;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2180,204,0 chrXVI 746530 . G A 4494.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4494,433,0 chrXVI 747237 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3727,361,0 chrXVI 747487 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.259;QD=25.73;ReadPosRankSum=2.416;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3783,370,0 chrXVI 748400 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.25;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3235,307,0 chrXVI 748650 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.66;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3458,328,0 chrXVI 748874 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3358,331,0 chrXVI 748946 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.798;DP=152;Dels=0.00;FS=4.415;HaplotypeScore=13.0110;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.094;QD=26.36;ReadPosRankSum=0.798;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:4006,364,0 chrXVI 749209 . T G 2094 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3826;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.93;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2127,210,0 chrXVI 749787 . A G 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.086;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.352;QD=25.87;ReadPosRankSum=1.672;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4502,466,0 chrXVI 749875 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3488;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.73;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4632,436,0 chrXVI 750029 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3473,334,0 chrXVI 750118 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.2515;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=24.94;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3151,292,0 chrXVI 750126 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.310;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.549;QD=22.37;ReadPosRankSum=1.617;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2784,274,0 chrXVI 750369 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=26.99;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4345,436,0 chrXVI 750734 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.35;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3151,307,0 chrXVI 750943 . C G 4434.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.55;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4434,433,0 chrXVI 751308 . T A 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=211;Dels=0.00;FS=2.925;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.529;QD=25.23;ReadPosRankSum=2.356;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:5324,520,0 chrXVI 752166 . C A 1929 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.05;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1962,186,0 chrXVI 752294 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.75;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3986,391,0 chrXVI 753173 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=40.2377;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.39;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1226,117,0 chrXVI 753479 . A C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.543;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.638;QD=26.96;ReadPosRankSum=1.638;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:3080,298,0 chrXVI 753557 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4522,433,0 chrXVI 753640 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.14;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4017,385,0 chrXVI 754681 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.40;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4118,397,0 chrXVI 754744 . T A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.79;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3295,319,0 chrXVI 754869 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.22;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4192,409,0 chrXVI 755194 . C T 4739.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.21;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4739,448,0 chrXVI 755692 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3478,349,0 chrXVI 755818 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.30;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3110,307,0 chrXVI 756089 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.85;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3621,349,0 chrXVI 756190 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.90;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:3180,307,0 chrXVI 756770 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.59;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4414,421,0 chrXVI 757135 . G T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.9703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.90;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3989,385,0 chrXVI 758824 . G T 2063 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2096,198,0 chrXVI 759400 . T G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=4.120;HaplotypeScore=11.3388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.651;QD=24.86;ReadPosRankSum=1.692;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4326,418,0 chrXVI 759469 . T G 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=8.464;HaplotypeScore=10.3368;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.466;QD=25.25;ReadPosRankSum=2.409;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4620,457,0 chrXVI 762886 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.57;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3874,364,0 chrXVI 766340 . C A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.31;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4868,466,0 chrXVI 769323 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;DP=133;Dels=0.00;FS=12.761;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=1;MQRankSum=4.726;QD=25.31;ReadPosRankSum=4.125;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:9,124:133:99:3366,319,0 chrXVI 775873 . T G 2327 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.02;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2360,234,0 chrXVI 776361 . G C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.7181;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.18;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3289,328,0 chrXVI 777055 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:93:951,93,0 chrXVI 777332 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2229,213,0 chrXVI 777410 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3253,313,0 chrXVI 777676 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.76;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2599,253,0 chrXVI 779081 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.00;FS=6.915;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=25.22;ReadPosRankSum=2.372;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:4060,394,0 chrXVI 779198 . G A 5219.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.99;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:5219,502,0 chrXVI 779281 . G A 5359.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.62;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5359,511,0 chrXVI 785197 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.068;QD=25.87;ReadPosRankSum=1.703;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3137,313,0 chrXVI 785737 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.91;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3912,391,0 chrXVI 786138 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.64;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4864,472,0 chrXVI 786427 . A G 1088.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.111;DP=637;Dels=0.00;FS=38.983;HaplotypeScore=17.5748;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=-4.505;QD=1.71;ReadPosRankSum=-7.148;SB=-1.464e+03 GT:AD:DP:GQ:PL 0/1:397,240:637:99:1118,0,7221 chrXVI 786450 . T G 2956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.795;DP=584;Dels=0.00;FS=20.996;HaplotypeScore=31.4443;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=-6.452;QD=5.06;ReadPosRankSum=-18.454;SB=-2.372e+03 GT:AD:DP:GQ:PL 0/1:330,249:584:99:2986,0,3076 chrXVI 787292 . G A 5116.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.65;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5116,496,0 chrXVI 787485 . A G 2887 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.28;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2920,286,0 chrXVI 787976 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3365;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=27.58;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4412,439,0 chrXVI 790660 . A C 5158.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.32;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5158,502,0 chrXVI 792484 . G T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4523,439,0 chrXVI 793555 . T G 3083 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3116,316,0 chrXVI 795379 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3097,313,0 chrXVI 797429 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7692;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.82;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3260,328,0 chrXVI 799422 . T C 5083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=2.858;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=27.63;ReadPosRankSum=2.409;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:5083,502,0 chrXVI 801154 . T A 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.415;QD=26.95;ReadPosRankSum=1.642;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:4124,394,0 chrXVI 802167 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1445,144,0 chrXVI 802415 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.99;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2996,304,0 chrXVI 803590 . T C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5328;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.89;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4428,436,0 chrXVI 810389 . A G 30.77 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=6.15;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:62,6,0 chrXVI 810401 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=4.36;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:5:6:53,6,0 chrXVI 810519 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrXVI 810552 . C T 31.77 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=7.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:63,6,0 chrXVI 813147 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.679;QD=27.05;ReadPosRankSum=1.704;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3381,337,0 chrXVI 814111 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.63;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4557,445,0 chrXVI 814192 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.13;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2091,204,0 chrXVI 816544 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.912;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=26.46;ReadPosRankSum=1.696;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2573,250,0 chrXVI 819256 . A G 432 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:465,45,0 chrXVI 821526 . C T 147.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=72;Dels=0.00;FS=1.869;HaplotypeScore=47.9973;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=0;MQRankSum=2.236;QD=2.04;ReadPosRankSum=1.877;SB=-6.527e+02 GT:AD:DP:GQ:PL 0/1:5,66:72:28:177,0,28 chrXVI 821582 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.54;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1861,180,0 chrXVI 821586 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.525;QD=20.19;ReadPosRankSum=1.693;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1830,183,0 chrXVI 821710 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.12;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1824,189,0 chrXVI 821711 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.89;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1783,189,0 chrXVI 821888 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0238;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.12;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3840,388,0 chrXVI 822297 . C G 4993.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.98;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4993,493,0 chrXVI 822502 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.34;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3724,367,0 chrXVI 822514 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.91;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4010,376,0 chrXVI 822901 . A G 7064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=269;Dels=0.00;FS=3.971;HaplotypeScore=14.4869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.253;QD=26.26;ReadPosRankSum=1.706;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:1,266:269:99:7064,709,0 chrXVI 823324 . G A 7473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=22.2676;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.695;QD=26.78;ReadPosRankSum=1.223;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:7473,727,0 chrXVI 825433 . G A 5439.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.9421;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.15;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5439,517,0 chrXVI 826128 . A C 4110.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.86;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4110,406,0 chrXVI 828223 . T A 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=158;Dels=0.00;FS=5.895;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.898;QD=27.48;ReadPosRankSum=2.879;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:4342,409,0 chrXVI 828256 . T G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.1479;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.175;QD=26.16;ReadPosRankSum=1.688;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4134,412,0 chrXVI 828752 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.982;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.841;QD=22.48;ReadPosRankSum=2.413;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3090,310,0 chrXVI 829002 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=7.658;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.829;QD=24.03;ReadPosRankSum=2.422;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4277,427,0 chrXVI 830982 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1430,150,0 chrXVI 832988 . T G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.566;DP=197;Dels=0.00;FS=12.040;HaplotypeScore=15.4045;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.016;QD=16.24;ReadPosRankSum=0.936;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:5,192:197:99:3233,330,0 chrXVI 833262 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=191;Dels=0.00;FS=5.932;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.311;QD=25.80;ReadPosRankSum=2.911;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4927,490,0 chrXVI 834908 . C G 5028.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.2277;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.52;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5028,532,0 chrXVI 835414 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.424;QD=28.28;ReadPosRankSum=1.694;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2578,250,0 chrXVI 836372 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.30;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3919,379,0 chrXVI 838701 . G A 2655 filter AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.7448;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=114;QD=10.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:54,188:243:99:2688,265,0 chrXVI 838833 . A G 993 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=15.69;MQ0=97;MQRankSum=-0.115;QD=5.77;ReadPosRankSum=-0.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,129:172:87:1026,87,0 chrXVI 838970 . T A 647 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=25.88;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:69:680,69,0 chrXVI 839079 . C T 828 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.025;DP=99;Dels=0.00;FS=13.617;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=19.76;MQ0=30;MQRankSum=-0.176;QD=8.36;ReadPosRankSum=-1.531;SB=-4.501e+01 GT:AD:DP:GQ:PL 1/1:15,84:99:65:861,65,0 chrXVI 839118 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.56;MQ0=0;QD=0.17;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:6:43,6,0 chrXVI 839142 . T A 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=-2.188;QD=8.40;ReadPosRankSum=2.406;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:982,99,0 chrXVI 839159 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=9.87;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1366,141,0 chrXVI 839169 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=11.23;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1627,168,0 chrXVI 839190 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=15.82;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2437,252,0 chrXVI 840443 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.388;QD=22.83;ReadPosRankSum=1.655;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3115,330,0 chrXVI 850437 . T G 5029.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=27.18;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:5029,502,0 chrXVI 850463 . A C 4093.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=27.11;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:4093,403,0 chrXVI 850488 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;QD=25.80;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3638,373,0 chrXVI 850634 . A T 2496 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=1;MQRankSum=-1.698;QD=24.23;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2529,252,0 chrXVI 856656 . T G 145.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=11.70;MQ0=51;MQRankSum=1.479;QD=2.31;ReadPosRankSum=0.740;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,34:63:1:174,0,1 chrXVI 856761 . T C 1297 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.763;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=21;MQRankSum=-0.409;QD=16.63;ReadPosRankSum=0.776;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:14,64:78:67:1330,67,0 chrXVI 858131 . G C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4147,412,0 chrXVI 858788 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.864;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.421;QD=25.65;ReadPosRankSum=1.713;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4770,475,0 chrXVI 858824 . T C 5168.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.5981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5168,502,0 chrXVI 859747 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4319;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.06;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3622,352,0 chrXVI 860239 . T A 2879 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.16;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2912,283,0 chrXVI 863056 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.871;QD=26.88;ReadPosRankSum=1.714;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:5215,505,0 chrXVI 863229 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.86;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4943,481,0 chrXVI 863372 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5171,511,0 chrXVI 864193 . C T 5507.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.6970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5507,526,0 chrXVI 864283 . C T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.50;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4386,433,0 chrXVI 864677 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.4242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3083,295,0 chrXVI 866381 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3531,349,0 chrXVI 867007 . G T 3126 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.17;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3159,301,0 chrXVI 867030 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.58;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2855,283,0 chrXVI 867975 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.53;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4325,415,0 chrXVI 867996 . G C 4281.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.75;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4281,436,0 chrXVI 868671 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SB=-3.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2144,210,0 chrXVI 870898 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.91;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3990,394,0 chrXVI 871361 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.633;QD=26.81;ReadPosRankSum=1.683;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3754,373,0 chrXVI 872247 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3667,373,0 chrXVI 872338 . T A 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=107;Dels=0.00;FS=5.653;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.311;QD=24.92;ReadPosRankSum=2.784;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2699,256,0 chrXVI 873246 . A G 3115 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.74;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3148,310,0 chrXVI 873415 . A T 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.313;QD=24.89;ReadPosRankSum=1.690;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2149,213,0 chrXVI 874530 . C A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.6955;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4636,466,0 chrXVI 874996 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=173;Dels=0.00;FS=4.879;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.389;QD=25.20;ReadPosRankSum=3.389;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:4359,430,0 chrXVI 875493 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3543,352,0 chrXVI 876785 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.80;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3352,340,0 chrXVI 876811 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1085;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.349;QD=21.77;ReadPosRankSum=1.694;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3941,394,0 chrXVI 877504 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3253,304,0 chrXVI 879007 . G T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4068,391,0 chrXVI 879379 . T A 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=166;Dels=0.00;FS=2.576;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.079;QD=24.90;ReadPosRankSum=2.958;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:4133,418,0 chrXVI 881360 . T A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.61;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3432,328,0 chrXVI 881834 . C A 4458.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.63;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4458,433,0 chrXVI 881962 . G A 5652.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.98;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5652,547,0 chrXVI 885979 . T A 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.064;HaplotypeScore=5.7300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.021;QD=26.11;ReadPosRankSum=1.711;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4256,430,0 chrXVI 887244 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=138;Dels=0.00;FS=14.412;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.831;QD=26.73;ReadPosRankSum=2.949;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3689,361,0 chrXVI 888534 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.30;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4666,442,0 chrXVI 890346 . T A 4234.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.66;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4234,424,0 chrXVI 890535 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.682;QD=24.80;ReadPosRankSum=1.710;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3894,391,0 chrXVI 890666 . G T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.11;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3767,358,0 chrXVI 890686 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.58;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3820,379,0 chrXVI 890723 . G C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.26;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3712,370,0 chrXVI 890904 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9835;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.55;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4496,427,0 chrXVI 892106 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3812,364,0 chrXVI 893345 . C T 6482.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.0801;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.93;SB=-3.653e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6482,619,0 chrXVI 893447 . C G 6395.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.0360;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:6395,643,0 chrXVI 893672 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=5.588;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.567;QD=26.43;ReadPosRankSum=1.699;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2861,291,0 chrXVI 894011 . T C 3318.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.98;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3318,328,0 chrXVI 894337 . T G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=25.54;ReadPosRankSum=1.241;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3448,349,0 chrXVI 895022 . C G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3898,394,0 chrXVI 897538 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.938;QD=24.86;ReadPosRankSum=1.700;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2792,279,0 chrXVI 898420 . A G 7278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=285;Dels=0.00;FS=3.026;HaplotypeScore=23.7392;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.594;QD=25.54;ReadPosRankSum=1.683;SB=-4.081e+03 GT:AD:DP:GQ:PL 1/1:1,282:285:99:7278,718,0 chrXVI 898783 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5436,523,0 chrXVI 900044 . T C 8000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=312;Dels=0.00;FS=2.564;HaplotypeScore=23.6881;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.097;QD=25.64;ReadPosRankSum=2.971;SB=-3.226e+03 GT:AD:DP:GQ:PL 1/1:4,307:312:99:8000,796,0 chrXVI 900472 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.2413;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.60;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4461,421,0 chrXVI 903415 . A C 5990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=263;Dels=0.00;FS=8.329;HaplotypeScore=21.2069;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.494;QD=22.78;ReadPosRankSum=3.414;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:4,255:263:99:5990,598,0 chrXVI 907771 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.90;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2481,240,0 chrXVI 907772 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.14;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2368,240,0 chrXVI 907815 . T C 2659 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1278;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.77;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2692,270,0 chrXVI 908134 . A C 3068 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5048;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.37;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3101,313,0 chrXVI 908156 . G A 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=0.636;QD=13.99;ReadPosRankSum=1.272;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2258,219,0 chrXVI 908173 . A T 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.276;DP=167;Dels=0.00;FS=4.165;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-1.234;QD=7.74;ReadPosRankSum=0.487;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:1325,114,0 chrXVI 908240 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=190;Dels=0.00;FS=18.561;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.802;QD=17.53;ReadPosRankSum=2.866;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3331,337,0 chrXVI 908318 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=179;Dels=0.00;FS=5.751;HaplotypeScore=29.4587;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.654;QD=20.10;ReadPosRankSum=2.926;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3598,364,0 chrXVI 908498 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=26.86;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3545,334,0 chrXVI 908706 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.54;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3218,310,0 chrXVI 908852 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=26.32;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4474,445,0 chrXVI 911554 . C T 4603.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.2442;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.61;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4603,445,0 chrXVI 915200 . G C 2975 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3008,298,0 chrXVI 916067 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.70;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3364,322,0 chrXVI 916830 . A T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.80;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3531,337,0 chrXVI 917223 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.00;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:3085,301,0 chrXVI 919175 . T A 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.641;QD=25.51;ReadPosRankSum=1.641;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2967,286,0 chrXVI 919665 . G A 6752.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.9303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.67;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:6752,643,0 chrXVI 919704 . G A 6593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=259;Dels=0.00;FS=5.085;HaplotypeScore=15.9160;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.141;QD=25.46;ReadPosRankSum=0.926;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:6593,688,0 chrXVI 919848 . A G 7187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=283;Dels=0.00;FS=2.917;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.316;QD=25.40;ReadPosRankSum=2.337;SB=-3.635e+03 GT:AD:DP:GQ:PL 1/1:2,281:283:99:7187,715,0 chrXVI 919896 . C T 7396.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.86;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:7396,745,0 chrXVI 920048 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=8.466;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.239;QD=20.59;ReadPosRankSum=2.359;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3932,385,0 chrXVI 920052 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.03;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3975,394,0 chrXVI 920178 . G C 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.59;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2689,268,0 chrXVI 920191 . A C 2488 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.82;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2521,249,0 chrXVI 920519 . A C 1461 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.56;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1494,153,0 chrXVI 920598 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=6.7710;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.44;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1353,138,0 chrXVI 920758 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=29.59;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2696,261,0 chrXVI 920779 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=0.253;QD=27.53;ReadPosRankSum=1.693;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2483,249,0 chrXVI 920827 . G A 916 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=16.36;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:949,105,0 chrXVI 920829 . C T 861 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=16.56;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:894,105,0 chrXVI 920832 . G C 874 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=15.89;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:907,102,0 chrXVI 920869 . A T 1882 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=19.60;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1915,189,0 chrXVI 920877 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=15.59;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1764,180,0 chrXVI 920890 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=17.43;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2281,231,0 chrXVI 920957 . A G 3391.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=17.75;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3391,339,0 chrXVI 920958 . C T 3359.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=17.59;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3359,336,0 chrXVI 920964 . T C 3299.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.165;DP=200;Dels=0.00;FS=7.416;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=1.665;QD=16.50;ReadPosRankSum=4.165;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:6,194:200:99:3299,333,0 chrXVI 920999 . C T 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=161.8642;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=-1.490;QD=12.96;ReadPosRankSum=0.540;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:2443,240,0 chrXVI 921020 . G T 1546 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.6644;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=7.33;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:1579,165,0 chrXVI 921116 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=219;Dels=0.00;FS=6.063;HaplotypeScore=2.5200;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=0.802;QD=19.86;ReadPosRankSum=2.922;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:4350,439,0 chrXVI 921117 . A C 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-0.818;QD=19.85;ReadPosRankSum=1.684;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4288,436,0 chrXVI 921271 . A C 4656.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.7851;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.40;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4656,469,0 chrXVI 921352 . A C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9835;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.040;QD=20.17;ReadPosRankSum=1.712;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3490,346,0 chrXVI 921475 . C T 4303.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=25.77;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4303,415,0 chrXVI 921485 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=156;Dels=0.00;FS=3.183;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.102;QD=24.54;ReadPosRankSum=1.710;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3828,376,0 chrXVI 921548 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=162.0286;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=23.46;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4129,394,0 chrXVI 921595 . C A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=24.89;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4231,409,0 chrXVI 921639 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=11.7637;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.526;QD=21.75;ReadPosRankSum=1.655;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2969,295,0 chrXVI 921661 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.430;QD=20.01;ReadPosRankSum=1.704;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2554,258,0 chrXVI 921692 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=19.20;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3086,310,0 chrXVI 921728 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=17.35;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2740,265,0 chrXVI 921737 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=16.69;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2520,244,0 chrXVI 921739 . T G 2502 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=16.91;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2535,252,0 chrXVI 921845 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=25.3236;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=24.97;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3720,370,0 chrXVI 921937 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=23.99;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3454,337,0 chrXVI 921984 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=16.61;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2142,207,0 chrXVI 921985 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=17.29;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2177,207,0 chrXVI 921998 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=13.63;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:1927,195,0 chrXVI 922017 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.762;DP=169;Dels=0.00;FS=11.959;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.508;QD=15.15;ReadPosRankSum=3.799;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:2593,255,0 chrXVI 922220 . A G 5658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=3.326;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.094;QD=24.60;ReadPosRankSum=1.671;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5658,568,0 chrXVI 922297 . T C 6338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=250;Dels=0.00;FS=3.019;HaplotypeScore=14.2575;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.730;QD=25.35;ReadPosRankSum=2.390;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:6338,637,0 chrXVI 922477 . T C 6001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=238;Dels=0.00;FS=9.254;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.284;QD=25.21;ReadPosRankSum=2.937;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:6001,604,0 chrXVI 922535 . G A 6095.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.48;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6095,577,0 chrXVI 922561 . C T 5435.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.74;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5435,529,0 chrXVI 922622 . A C 5374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.7301;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.556;QD=24.21;ReadPosRankSum=1.716;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5374,529,0 chrXVI 922830 . C T 2648 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=25.1519;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.43;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2681,259,0 chrXVI 922942 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.02;FS=0.000;HaplotypeScore=42.4588;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.61;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3618,349,0 chrXVI 923240 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.24;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2913,280,0 chrXVI 923279 . T G 2244 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.50;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2277,225,0 chrXVI 923349 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.20;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3142,301,0 chrXVI 923356 . G T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.44;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3422,328,0 chrXVI 923850 . C G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.63;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3818,382,0 chrXVI 923983 . C G 2904 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3898;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.93;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2937,295,0 chrXVI 924094 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=27.42;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3428,325,0 chrXVI 924165 . T C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.052;HaplotypeScore=7.9606;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.181;QD=22.40;ReadPosRankSum=1.699;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2407,246,0 chrXVI 924180 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.94;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2316,231,0 chrXVI 924428 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=26.17;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2938,292,0 chrXVI 924658 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3684,367,0 chrXVI 924915 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.91;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4846,469,0 chrXVI 924973 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.296;HaplotypeScore=13.4940;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.672;QD=24.03;ReadPosRankSum=1.692;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4157,418,0 chrXVI 925093 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=4.035;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.541;QD=25.48;ReadPosRankSum=1.710;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4000,397,0 chrXVI 925138 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.718;QD=22.58;ReadPosRankSum=1.683;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3194,322,0 chrXVI 925172 . C G 2812 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2845,280,0 chrXVI 925240 . T A 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.146;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.480;QD=28.72;ReadPosRankSum=1.705;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3734,352,0 chrXVI 925559 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=149;Dels=0.00;FS=12.206;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.318;QD=24.63;ReadPosRankSum=2.953;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3670,364,0 chrXVI 925572 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=25.50;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3596,340,0 chrXVI 925584 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.949;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.722;QD=21.14;ReadPosRankSum=1.708;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3077,307,0 chrXVI 925593 . G C 3075 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.78;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3108,318,0 chrXVI 925746 . T A 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=3.016;HaplotypeScore=9.6407;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.050;QD=24.78;ReadPosRankSum=2.365;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2908,289,0 chrXVI 925939 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.370;QD=27.18;ReadPosRankSum=1.613;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3969,388,0 chrXVI 926181 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.136;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.485;QD=28.17;ReadPosRankSum=1.212;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3972,388,0 chrXVI 927353 . T G 1256 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=23.70;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1289,126,0 chrXVI 927907 . A C 4676.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.42;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4676,469,0 chrXVI 927980 . A G 5154.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6071;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.27;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:5154,502,0 chrXVI 928226 . T C 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=5.263;HaplotypeScore=16.6589;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.540;QD=22.18;ReadPosRankSum=1.652;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4857,493,0 chrXVI 929522 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.12;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3604,343,0 chrXVI 929728 . A G 3062.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570;DP=221;Dels=0.00;FS=53.445;HaplotypeScore=17.4445;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=4.905;QD=13.86;ReadPosRankSum=1.333;SB=-9.620e+02 GT:AD:DP:GQ:PL 0/1:80,140:221:99:3092,0,1787 chrXVI 929870 . C T 9164.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=27.0956;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.87;SB=-4.374e+03 GT:AD:DP:GQ:PL 1/1:0,338:341:99:9164,881,0 chrXVI 930549 . A T 9397.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=31.4159;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.470;QD=24.28;ReadPosRankSum=1.723;SB=-4.761e+03 GT:AD:DP:GQ:PL 1/1:1,386:387:99:9397,908,0 chrXVI 930581 . A T 8399.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=379;Dels=0.00;FS=3.045;HaplotypeScore=39.4198;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.051;QD=22.16;ReadPosRankSum=1.714;SB=-5.050e+03 GT:AD:DP:GQ:PL 1/1:1,377:379:99:8399,844,0 chrXVI 930978 . A G 2288.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=278;Dels=0.00;FS=4.043;HaplotypeScore=15.0077;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.598;QD=8.23;ReadPosRankSum=1.620;SB=-1.203e+03 GT:AD:DP:GQ:PL 0/1:157,120:277:99:2318,0,3496 chrXVI 930986 . G A 7120.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=20.8601;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=26.67;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:7120,685,0 chrXVI 931077 . T C 7201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=265;Dels=0.00;FS=5.211;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=2.080;QD=27.17;ReadPosRankSum=2.936;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:3,262:265:99:7201,715,0 chrXVI 931205 . C T 3182.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.114;DP=308;Dels=0.01;FS=1.925;HaplotypeScore=27.4176;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=1.257;QD=10.33;ReadPosRankSum=-0.015;SB=-1.559e+03 GT:AD:DP:GQ:PL 0/1:144,159:305:99:3212,0,3000 chrXVI 931245 . T C 2933.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=317;Dels=0.00;FS=1.862;HaplotypeScore=29.2623;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=-0.693;QD=9.25;ReadPosRankSum=0.824;SB=-1.593e+03 GT:AD:DP:GQ:PL 0/1:168,148:316:99:2963,0,3219 chrXVI 931293 . T C 7521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=308;Dels=0.00;FS=6.266;HaplotypeScore=20.0451;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.527;QD=24.42;ReadPosRankSum=2.417;SB=-4.253e+03 GT:AD:DP:GQ:PL 1/1:2,304:308:99:7521,757,0 chrXVI 931948 . C T 2539.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.289;DP=244;Dels=0.00;FS=5.228;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.502;QD=10.41;ReadPosRankSum=0.674;SB=-1.281e+03 GT:AD:DP:GQ:PL 0/1:129,115:244:99:2569,0,2736 chrXVI 932310 . T C 4177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=396;Dels=0.00;FS=1.635;HaplotypeScore=39.8104;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=0.376;QD=10.55;ReadPosRankSum=-0.359;SB=-1.959e+03 GT:AD:DP:GQ:PL 0/1:204,189:396:99:4177,0,4030 chrXVI 932361 . T C 4664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.645;DP=419;Dels=0.00;FS=10.385;HaplotypeScore=39.3997;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=2.064;QD=11.13;ReadPosRankSum=-0.092;SB=-2.013e+03 GT:AD:DP:GQ:PL 0/1:193,225:419:99:4664,0,4371 chrXVI 932535 . T G 5297.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=431;Dels=0.00;FS=0.000;HaplotypeScore=17.7945;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=12.29;SB=-5.542e+03 GT:AD:DP:GQ:PL 1/1:0,423:429:99:5297,623,0 chrXVI 932536 . G C 4925.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=421;Dels=0.00;FS=2.994;HaplotypeScore=14.0836;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.323;QD=11.70;ReadPosRankSum=2.226;SB=-5.293e+03 GT:AD:DP:GQ:PL 1/1:2,405:421:99:4925,593,0 chrXVI 932537 . A G 5442.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.595;DP=419;Dels=0.00;FS=26.069;HaplotypeScore=14.8723;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=4.967;QD=12.99;ReadPosRankSum=5.430;SB=-5.095e+03 GT:AD:DP:GQ:PL 1/1:15,400:419:99:5442,635,0 chrXVI 932542 . A G 8484.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.446;DP=432;Dels=0.00;FS=37.582;HaplotypeScore=11.3620;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=5.477;QD=19.64;ReadPosRankSum=4.935;SB=-4.911e+03 GT:AD:DP:GQ:PL 1/1:11,421:432:99:8484,839,0 chrXVI 932855 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=22.2336;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.97;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2330,231,0 chrXVI 932882 . C A 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=24.4396;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.069;QD=20.77;ReadPosRankSum=1.640;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1591,153,0 chrXVI 933374 . A T 2047.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;DP=208;Dels=0.00;FS=3.114;HaplotypeScore=12.7141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.533;QD=9.84;ReadPosRankSum=-1.689;SB=-1.055e+03 GT:AD:DP:GQ:PL 0/1:102,106:208:99:2077,0,2253 chrXVI 934582 . C T 1833.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;DP=201;Dels=0.00;FS=8.051;HaplotypeScore=14.2770;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.004;QD=9.12;ReadPosRankSum=0.321;SB=-9.930e+02 GT:AD:DP:GQ:PL 0/1:102,98:201:99:1863,0,2070 chrXVI 934801 . G A 2772.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.654;DP=272;Dels=0.00;FS=2.868;HaplotypeScore=15.0533;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-0.268;QD=10.19;ReadPosRankSum=-0.370;SB=-9.050e+02 GT:AD:DP:GQ:PL 0/1:147,125:272:99:2802,0,3188 chrXVI 934877 . T C 2923.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;DP=291;Dels=0.00;FS=0.888;HaplotypeScore=12.6060;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-2.122;QD=10.04;ReadPosRankSum=2.932;SB=-1.756e+03 GT:AD:DP:GQ:PL 0/1:140,151:291:99:2953,0,3129 chrXVI 934884 . C T 2970.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;DP=305;Dels=0.00;FS=0.417;HaplotypeScore=14.7661;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-1.571;QD=9.74;ReadPosRankSum=1.641;SB=-1.899e+03 GT:AD:DP:GQ:PL 0/1:145,158:305:99:3000,0,3166 chrXVI 935125 . A G 2995.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=303;Dels=0.00;FS=1.902;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-0.191;QD=9.88;ReadPosRankSum=0.101;SB=-1.620e+03 GT:AD:DP:GQ:PL 0/1:155,146:303:99:3025,0,3230 chrXVI 935140 . C G 2588.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;DP=291;Dels=0.00;FS=0.428;HaplotypeScore=15.8516;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-3.013;QD=8.89;ReadPosRankSum=-0.333;SB=-1.521e+03 GT:AD:DP:GQ:PL 0/1:147,139:291:99:2618,0,3228 chrXVI 935143 . C T 2512.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DP=289;Dels=0.00;FS=1.400;HaplotypeScore=12.6422;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=-3.503;QD=8.69;ReadPosRankSum=-0.070;SB=-1.468e+03 GT:AD:DP:GQ:PL 0/1:150,138:289:99:2542,0,3119 chrXVI 935215 . C A 2504.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.064;DP=303;Dels=0.00;FS=0.872;HaplotypeScore=19.1241;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-0.138;QD=8.26;ReadPosRankSum=-1.179;SB=-1.647e+03 GT:AD:DP:GQ:PL 0/1:163,140:303:99:2534,0,3299 chrXVI 935251 . A T 2783.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=308;Dels=0.00;FS=0.861;HaplotypeScore=19.7058;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.275;QD=9.04;ReadPosRankSum=-0.215;SB=-1.609e+03 GT:AD:DP:GQ:PL 0/1:163,145:308:99:2813,0,3485 chrXVI 935320 . T G 2849.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DP=317;Dels=0.00;FS=5.885;HaplotypeScore=31.4236;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.813;QD=8.99;ReadPosRankSum=-0.379;SB=-1.730e+03 GT:AD:DP:GQ:PL 0/1:164,150:317:99:2879,0,3510 chrXVI 936081 . C T 1955.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;DP=217;Dels=0.00;FS=1.682;HaplotypeScore=10.4430;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.358;QD=9.01;ReadPosRankSum=0.686;SB=-9.860e+02 GT:AD:DP:GQ:PL 0/1:113,101:217:99:1985,0,2604 chrXVI 936124 . T C 2441.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DP=248;Dels=0.00;FS=3.735;HaplotypeScore=13.0234;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=0.245;QD=9.84;ReadPosRankSum=0.174;SB=-1.078e+03 GT:AD:DP:GQ:PL 0/1:129,119:248:99:2471,0,2951 chrXVI 936303 . C T 2220.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;DP=214;Dels=0.00;FS=1.064;HaplotypeScore=14.2976;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.962;QD=10.37;ReadPosRankSum=-1.352;SB=-1.199e+03 GT:AD:DP:GQ:PL 0/1:102,110:214:99:2250,0,2334 chrXVI 936393 . G C 2564.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=245;Dels=0.00;FS=8.325;HaplotypeScore=12.0382;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-1.038;QD=10.47;ReadPosRankSum=-1.056;SB=-1.202e+03 GT:AD:DP:GQ:PL 0/1:123,121:245:99:2594,0,2589 chrXVI 936431 . G A 2259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=233;Dels=0.00;FS=10.691;HaplotypeScore=11.1408;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.424;QD=9.70;ReadPosRankSum=0.063;SB=-1.164e+03 GT:AD:DP:GQ:PL 0/1:118,113:233:99:2289,0,2519 chrXVI 936638 . G C 2331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=213;Dels=0.00;FS=6.718;HaplotypeScore=15.6287;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=1.376;QD=10.94;ReadPosRankSum=-1.560;SB=-1.103e+03 GT:AD:DP:GQ:PL 0/1:98,112:213:99:2361,0,2130 chrXVI 936758 . T C 1537.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DP=153;Dels=0.00;FS=1.300;HaplotypeScore=12.4547;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=-0.293;QD=10.05;ReadPosRankSum=1.705;SB=-7.880e+02 GT:AD:DP:GQ:PL 0/1:74,74:153:99:1567,0,1485 chrXVI 936797 . C G 1649.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;DP=154;Dels=0.00;FS=10.488;HaplotypeScore=7.0322;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=1.347;QD=10.71;ReadPosRankSum=-0.161;SB=-5.820e+02 GT:AD:DP:GQ:PL 0/1:68,84:154:99:1679,0,1429 chrXVI 936807 . T C 1480.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;DP=165;Dels=0.00;FS=7.165;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-0.781;QD=8.97;ReadPosRankSum=0.362;SB=-7.330e+02 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1510,0,1820 chrXVI 936816 . G A 1791.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;DP=172;Dels=0.00;FS=4.798;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-2.134;QD=10.41;ReadPosRankSum=-1.254;SB=-6.820e+02 GT:AD:DP:GQ:PL 0/1:76,95:172:99:1821,0,1597 chrXVI 936837 . A T 1709.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DP=167;Dels=0.00;FS=4.751;HaplotypeScore=3.3937;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=1.098;QD=10.23;ReadPosRankSum=-0.422;SB=-7.530e+02 GT:AD:DP:GQ:PL 0/1:88,79:167:99:1739,0,1890 chrXVI 936866 . T C 1540.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.049;DP=154;Dels=0.00;FS=8.835;HaplotypeScore=11.3716;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=0.173;QD=10.00;ReadPosRankSum=0.959;SB=-6.200e+02 GT:AD:DP:GQ:PL 0/1:72,79:154:99:1570,0,1378 chrXVI 936922 . G A 1829.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;DP=174;Dels=0.00;FS=6.600;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.192;QD=10.51;ReadPosRankSum=-1.303;SB=-1.082e+03 GT:AD:DP:GQ:PL 0/1:81,93:174:99:1859,0,1820 chrXVI 936956 . T C 2385.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=26.5012;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.178;QD=9.94;ReadPosRankSum=1.211;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:120,120:240:99:2415,0,2718 chrXVI 937052 . A G 1889.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;DP=183;Dels=0.00;FS=1.256;HaplotypeScore=14.2600;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=1.089;QD=10.32;ReadPosRankSum=-2.505;SB=-6.000e+02 GT:AD:DP:GQ:PL 0/1:94,89:183:99:1919,0,2142 chrXVI 937087 . A G 1774.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=172;Dels=0.00;FS=0.562;HaplotypeScore=9.8884;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=0.363;QD=10.31;ReadPosRankSum=-1.170;SB=-8.150e+02 GT:AD:DP:GQ:PL 0/1:90,82:172:99:1804,0,2045 chrXVI 937101 . G C 1790.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6068;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-1.887;QD=9.47;ReadPosRankSum=-2.050;SB=-9.050e+02 GT:AD:DP:GQ:PL 0/1:102,85:189:99:1820,0,2158 chrXVI 937209 . G A 2158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DP=260;Dels=0.00;FS=9.015;HaplotypeScore=21.0643;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.955;QD=8.30;ReadPosRankSum=1.227;SB=-8.470e+02 GT:AD:DP:GQ:PL 0/1:142,116:260:99:2188,0,3131 chrXVI 937257 . A G 2372.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;DP=212;Dels=0.00;FS=6.722;HaplotypeScore=16.5927;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.932;QD=11.19;ReadPosRankSum=1.447;SB=-1.038e+03 GT:AD:DP:GQ:PL 0/1:102,107:212:99:2402,0,2039 chrXVI 937324 . T C 2374.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.098;DP=219;Dels=0.00;FS=1.046;HaplotypeScore=13.5261;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-1.533;QD=10.84;ReadPosRankSum=0.608;SB=-1.149e+03 GT:AD:DP:GQ:PL 0/1:102,116:219:99:2404,0,2035 chrXVI 937373 . A G 1761.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;DP=189;Dels=0.00;FS=13.948;HaplotypeScore=16.4050;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-1.904;QD=9.32;ReadPosRankSum=-1.677;SB=-1.011e+03 GT:AD:DP:GQ:PL 0/1:95,93:189:99:1791,0,2132 chrXVI 937470 . A C 2627.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.157;DP=251;Dels=0.00;FS=10.107;HaplotypeScore=13.1745;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-3.224;QD=10.47;ReadPosRankSum=-0.905;SB=-1.072e+03 GT:AD:DP:GQ:PL 0/1:118,131:251:99:2657,0,2632 chrXVI 937542 . G A 3200.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;DP=306;Dels=0.00;FS=2.554;HaplotypeScore=23.3800;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=-1.132;QD=10.46;ReadPosRankSum=-0.684;SB=-1.256e+03 GT:AD:DP:GQ:PL 0/1:154,150:306:99:3230,0,3164 chrXVI 937701 . A T 3623.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.333;DP=370;Dels=0.01;FS=0.000;HaplotypeScore=29.7156;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-0.059;QD=9.79;ReadPosRankSum=0.161;SB=-1.824e+03 GT:AD:DP:GQ:PL 0/1:192,176:368:99:3623,0,3978 chrXVI 937774 . G A 2325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.585;DP=357;Dels=0.00;FS=1.765;HaplotypeScore=171.9833;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-4.158;QD=6.51;ReadPosRankSum=-1.017;SB=-1.839e+03 GT:AD:DP:GQ:PL 0/1:174,183:357:99:2355,0,3688 chrXVI 937790 . A G 2427.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=182.5490;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-3.511;QD=6.78;ReadPosRankSum=2.169;SB=-1.406e+03 GT:AD:DP:GQ:PL 0/1:185,169:358:99:2457,0,3930 chrXVI 937822 . G T 2543.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DP=332;Dels=0.00;FS=1.386;HaplotypeScore=22.2319;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-2.191;QD=7.66;ReadPosRankSum=-0.067;SB=-1.294e+03 GT:AD:DP:GQ:PL 0/1:170,158:332:99:2573,0,3752 chrXVI 937854 . G T 2230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.662;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=12.8438;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-1.833;QD=7.17;ReadPosRankSum=0.344;SB=-1.018e+03 GT:AD:DP:GQ:PL 0/1:172,137:311:99:2260,0,3397 chrXVI 937874 . A G 2245.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;DP=276;Dels=0.00;FS=1.003;HaplotypeScore=18.1700;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-0.070;QD=8.13;ReadPosRankSum=1.030;SB=-8.200e+02 GT:AD:DP:GQ:PL 0/1:159,117:276:99:2275,0,3089 chrXVI 938038 . T G 1580.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DP=166;Dels=0.00;FS=2.723;HaplotypeScore=9.3000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-0.875;QD=9.52;ReadPosRankSum=-0.162;SB=-8.920e+02 GT:AD:DP:GQ:PL 0/1:85,81:166:99:1610,0,1965 chrXVI 938071 . T G 1861.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;DP=175;Dels=0.00;FS=6.513;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=0.244;QD=10.63;ReadPosRankSum=0.366;SB=-9.690e+02 GT:AD:DP:GQ:PL 0/1:88,85:175:99:1891,0,1808 chrXVI 938107 . A T 1763.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;DP=197;Dels=0.00;FS=3.235;HaplotypeScore=8.0875;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.471;QD=8.95;ReadPosRankSum=-0.815;SB=-8.340e+02 GT:AD:DP:GQ:PL 0/1:108,89:197:99:1793,0,2279 chrXVI 938152 . A G 2134.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=218;Dels=0.00;FS=2.336;HaplotypeScore=18.3313;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-1.584;QD=9.79;ReadPosRankSum=-0.825;SB=-1.043e+03 GT:AD:DP:GQ:PL 0/1:117,100:218:99:2164,0,2566 chrXVI 938304 . C T 2956.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;DP=280;Dels=0.00;FS=10.098;HaplotypeScore=11.2194;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.523;QD=10.56;ReadPosRankSum=-1.345;SB=-9.330e+02 GT:AD:DP:GQ:PL 0/1:137,143:280:99:2986,0,3107 chrXVI 938410 . G C 3578.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=325;Dels=0.00;FS=3.615;HaplotypeScore=27.3176;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.600;QD=11.01;ReadPosRankSum=0.378;SB=-1.895e+03 GT:AD:DP:GQ:PL 0/1:150,171:325:99:3578,0,2936 chrXVI 938531 . G C 4291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.416;DP=389;Dels=0.00;FS=6.629;HaplotypeScore=23.4850;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-1.086;QD=11.03;ReadPosRankSum=0.189;SB=-2.353e+03 GT:AD:DP:GQ:PL 0/1:185,198:389:99:4291,0,4049 chrXVI 938716 . C T 3145.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DP=349;Dels=0.00;FS=0.391;HaplotypeScore=19.5489;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-1.076;QD=9.01;ReadPosRankSum=-0.480;SB=-1.690e+03 GT:AD:DP:GQ:PL 0/1:188,160:349:99:3175,0,3790 chrXVI 938727 . A G 3004.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.546;DP=352;Dels=0.00;FS=1.781;HaplotypeScore=12.1239;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-2.037;QD=8.53;ReadPosRankSum=-1.246;SB=-1.505e+03 GT:AD:DP:GQ:PL 0/1:192,160:352:99:3034,0,4274 chrXVI 938739 . G A 2914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DP=359;Dels=0.00;FS=1.279;HaplotypeScore=20.8892;MLEAC=1;MLEAF=0.500;MQ=58.11;MQ0=0;MQRankSum=-0.615;QD=8.12;ReadPosRankSum=-0.929;SB=-1.359e+03 GT:AD:DP:GQ:PL 0/1:198,160:359:99:2944,0,3911 chrXVI 939003 . G A 1220.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DP=143;Dels=0.00;FS=1.760;HaplotypeScore=15.9514;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-1.794;QD=8.53;ReadPosRankSum=-0.593;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:75,67:143:99:1250,0,1457 chrXVI 939137 . G A 228.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DP=36;Dels=0.00;FS=3.802;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.022;QD=6.33;ReadPosRankSum=-1.572;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:99:258,0,207 chrXVI 939206 . T C 374.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=33.0826;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-0.437;QD=4.07;ReadPosRankSum=-2.027;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,26:91:99:404,0,967 chrXVI 939248 . A T 1186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.270;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5314;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.557;QD=8.12;ReadPosRankSum=1.712;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,55:146:99:1216,0,2078 chrXVI 939489 . G C 6784.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=17.3876;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.64;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:0,281:287:99:6784,688,0 chrXVI 939501 . A T 2259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;DP=280;Dels=0.00;FS=22.589;HaplotypeScore=14.3423;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=0.620;QD=8.07;ReadPosRankSum=0.412;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:157,123:280:99:2289,0,3248 chrXVI 939609 . A G 1747.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700;DP=224;Dels=0.00;FS=3.824;HaplotypeScore=24.5296;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-1.038;QD=7.80;ReadPosRankSum=-1.292;SB=-8.570e+02 GT:AD:DP:GQ:PL 0/1:122,99:224:99:1777,0,2666 chrXVI 939663 . A G 2126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.262;DP=238;Dels=0.00;FS=0.484;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=3.108;QD=8.93;ReadPosRankSum=-0.437;SB=-1.040e+03 GT:AD:DP:GQ:PL 0/1:126,112:238:99:2156,0,2749 chrXVI 939714 . T A 2200.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;DP=240;Dels=0.00;FS=0.485;HaplotypeScore=14.5541;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=0.726;QD=9.17;ReadPosRankSum=1.836;SB=-8.940e+02 GT:AD:DP:GQ:PL 0/1:132,108:240:99:2230,0,2528 chrXVI 939734 . G A 1711.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DP=228;Dels=0.00;FS=1.646;HaplotypeScore=6.7128;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=0.240;QD=7.50;ReadPosRankSum=-1.237;SB=-9.920e+02 GT:AD:DP:GQ:PL 0/1:128,100:228:99:1741,0,2800 chrXVI 939747 . T C 1699.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.157;DP=227;Dels=0.00;FS=3.009;HaplotypeScore=8.0295;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-2.022;QD=7.48;ReadPosRankSum=-2.934;SB=-1.038e+03 GT:AD:DP:GQ:PL 0/1:126,101:227:99:1729,0,2919 chrXVI 939830 . A G 2281.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DP=254;Dels=0.00;FS=1.545;HaplotypeScore=7.2379;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=-0.651;QD=8.98;ReadPosRankSum=-0.719;SB=-1.263e+03 GT:AD:DP:GQ:PL 0/1:123,128:254:99:2311,0,2885 chrXVI 939832 . A T 2182.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.3326;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-0.300;QD=8.46;ReadPosRankSum=-0.256;SB=-1.174e+03 GT:AD:DP:GQ:PL 0/1:128,130:258:99:2212,0,2695 chrXVI 939982 . A G 3022.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.518;DP=334;Dels=0.00;FS=5.778;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-3.545;QD=9.05;ReadPosRankSum=1.091;SB=-1.696e+03 GT:AD:DP:GQ:PL 0/1:178,156:334:99:3052,0,4020 chrXVI 939993 . G T 2920.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;DP=368;Dels=0.00;FS=2.764;HaplotypeScore=10.3470;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-5.505;QD=7.93;ReadPosRankSum=0.677;SB=-1.764e+03 GT:AD:DP:GQ:PL 0/1:190,178:368:99:2950,0,4175 chrXVI 939999 . G A 3053.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;DP=365;Dels=0.00;FS=2.777;HaplotypeScore=12.1914;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-2.093;QD=8.36;ReadPosRankSum=0.491;SB=-2.008e+03 GT:AD:DP:GQ:PL 0/1:185,179:365:99:3083,0,3974 chrXVI 940653 . A G 2106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.308;DP=216;Dels=0.00;FS=3.130;HaplotypeScore=23.7991;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.933;QD=9.75;ReadPosRankSum=1.486;SB=-9.160e+02 GT:AD:DP:GQ:PL 0/1:110,105:215:99:2136,0,2098 chrXVI 941049 . G A 2955.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=286;Dels=0.00;FS=2.653;HaplotypeScore=22.2590;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=0.959;QD=10.33;ReadPosRankSum=0.113;SB=-1.239e+03 GT:AD:DP:GQ:PL 0/1:137,148:286:99:2985,0,3104 chrXVI 941176 . A G 2375.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.442;DP=222;Dels=0.00;FS=10.859;HaplotypeScore=18.2551;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-0.402;QD=10.70;ReadPosRankSum=0.839;SB=-1.183e+03 GT:AD:DP:GQ:PL 0/1:110,112:222:99:2405,0,2396 chrXVI 941337 . G A 1858.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;DP=204;Dels=0.00;FS=11.675;HaplotypeScore=15.1213;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-2.685;QD=9.11;ReadPosRankSum=-1.808;SB=-1.069e+03 GT:AD:DP:GQ:PL 0/1:103,100:204:99:1888,0,2182 chrXVI 941366 . C T 2029.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.056;DP=239;Dels=0.00;FS=3.640;HaplotypeScore=17.7566;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-0.931;QD=8.49;ReadPosRankSum=-0.999;SB=-1.293e+03 GT:AD:DP:GQ:PL 0/1:123,116:239:99:2059,0,2712 chrXVI 941559 . G A 4104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DP=416;Dels=0.00;FS=2.706;HaplotypeScore=17.8678;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-1.462;QD=9.87;ReadPosRankSum=0.727;SB=-1.738e+03 GT:AD:DP:GQ:PL 0/1:222,192:416:99:4104,0,4968 chrXVI 941642 . C T 4418.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.861;DP=402;Dels=0.00;FS=0.365;HaplotypeScore=21.8095;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-1.555;QD=10.99;ReadPosRankSum=0.754;SB=-2.008e+03 GT:AD:DP:GQ:PL 0/1:200,202:402:99:4418,0,4158 chrXVI 941677 . C T 4947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.942;DP=472;Dels=0.00;FS=2.364;HaplotypeScore=29.3756;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.717;QD=10.48;ReadPosRankSum=-0.745;SB=-2.484e+03 GT:AD:DP:GQ:PL 0/1:232,240:472:99:4947,0,5044 chrXVI 941772 . A T 4299.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.772;DP=458;Dels=0.00;FS=8.003;HaplotypeScore=35.9144;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.273;QD=9.39;ReadPosRankSum=-1.067;SB=-2.362e+03 GT:AD:DP:GQ:PL 0/1:245,213:458:99:4299,0,5065 chrXVI 941801 . T C 4225.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.752;DP=459;Dels=0.00;FS=6.663;HaplotypeScore=29.0779;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-1.395;QD=9.20;ReadPosRankSum=1.350;SB=-2.186e+03 GT:AD:DP:GQ:PL 0/1:245,210:459:99:4225,0,5068 chrXVI 941879 . A G 4373.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;DP=427;Dels=0.00;FS=4.803;HaplotypeScore=43.6190;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-1.277;QD=10.24;ReadPosRankSum=0.833;SB=-2.043e+03 GT:AD:DP:GQ:PL 0/1:214,213:427:99:4373,0,4412 chrXVI 942010 . G C 3360.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=20.5600;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-0.803;QD=8.84;ReadPosRankSum=0.424;SB=-1.770e+03 GT:AD:DP:GQ:PL 0/1:193,184:380:99:3360,0,4143 chrXVI 942021 . T C 3318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DP=380;Dels=0.00;FS=2.737;HaplotypeScore=15.3359;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-1.052;QD=8.73;ReadPosRankSum=1.116;SB=-1.736e+03 GT:AD:DP:GQ:PL 0/1:192,184:380:99:3318,0,4115 chrXVI 942078 . T A 3326.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DP=359;Dels=0.00;FS=6.165;HaplotypeScore=20.6484;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-3.829;QD=9.26;ReadPosRankSum=-0.008;SB=-1.632e+03 GT:AD:DP:GQ:PL 0/1:186,173:359:99:3326,0,4399 chrXVI 942107 . G T 2860.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.877;DP=320;Dels=0.00;FS=5.092;HaplotypeScore=6.8651;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-4.008;QD=8.94;ReadPosRankSum=-0.063;SB=-1.334e+03 GT:AD:DP:GQ:PL 0/1:173,146:320:99:2890,0,4063 chrXVI 942124 . A T 2881.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.172;DP=318;Dels=0.00;FS=6.763;HaplotypeScore=20.4510;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=0;MQRankSum=-3.179;QD=9.06;ReadPosRankSum=-0.596;SB=-1.089e+03 GT:AD:DP:GQ:PL 0/1:174,144:318:99:2911,0,3829 chrXVI 942134 . C T 3931.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.954;DP=321;Dels=0.00;FS=7.524;HaplotypeScore=21.3879;MLEAC=1;MLEAF=0.500;MQ=56.12;MQ0=0;MQRankSum=4.847;QD=12.25;ReadPosRankSum=1.305;SB=-2.063e+03 GT:AD:DP:GQ:PL 0/1:147,174:321:99:3931,0,2786 chrXVI 942158 . T C 2448.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.339;DP=320;Dels=0.00;FS=6.812;HaplotypeScore=20.8268;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-2.098;QD=7.65;ReadPosRankSum=0.064;SB=-1.097e+03 GT:AD:DP:GQ:PL 0/1:176,140:320:99:2478,0,4029 chrXVI 942173 . G A 2327.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.896;DP=306;Dels=0.00;FS=6.154;HaplotypeScore=17.7874;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=-1.756;QD=7.60;ReadPosRankSum=1.761;SB=-1.031e+03 GT:AD:DP:GQ:PL 0/1:178,126:306:99:2357,0,4098 chrXVI 942198 . A G 3871.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.893;DP=297;Dels=0.00;FS=8.170;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=4.241;QD=13.03;ReadPosRankSum=1.404;SB=-1.824e+03 GT:AD:DP:GQ:PL 0/1:132,164:297:99:3871,0,2607 chrXVI 942206 . T C 2418.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;DP=298;Dels=0.00;FS=7.293;HaplotypeScore=19.0338;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-1.688;QD=8.11;ReadPosRankSum=-1.271;SB=-9.790e+02 GT:AD:DP:GQ:PL 0/1:167,127:298:99:2448,0,3839 chrXVI 942307 . G A 739.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=182;Dels=0.00;FS=61.476;HaplotypeScore=9.7374;MLEAC=1;MLEAF=0.500;MQ=52.13;MQ0=0;MQRankSum=-7.553;QD=4.06;ReadPosRankSum=-0.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,61:182:99:769,0,2994 chrXVI 942311 . A G 711.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.567;DP=179;Dels=0.00;FS=45.964;HaplotypeScore=8.2147;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=-8.352;QD=3.97;ReadPosRankSum=0.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,54:179:99:741,0,3050 chrXVI 942315 . A G 709.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.509;DP=185;Dels=0.00;FS=48.455;HaplotypeScore=9.0034;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=-8.111;QD=3.83;ReadPosRankSum=-0.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,58:185:99:739,0,3182 chrXVI 942317 . G A 725.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;DP=185;Dels=0.00;FS=48.814;HaplotypeScore=8.0875;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=0;MQRankSum=-6.495;QD=3.92;ReadPosRankSum=-1.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,60:185:99:755,0,3030 chrXVI 942354 . G T 771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=201;Dels=0.00;FS=52.981;HaplotypeScore=64.8828;MLEAC=1;MLEAF=0.500;MQ=52.18;MQ0=0;MQRankSum=-4.508;QD=3.84;ReadPosRankSum=0.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,62:201:99:801,0,3177 chrXVI 942414 . C T 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DP=167;Dels=0.00;FS=48.440;HaplotypeScore=15.3045;MLEAC=1;MLEAF=0.500;MQ=51.68;MQ0=2;MQRankSum=-2.631;QD=1.64;ReadPosRankSum=-4.930;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,31:167:99:304,0,2982 chrXVI 942427 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=23.3846;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=2;QD=23.36;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3621,369,0 chrXVI 942445 . G A 108.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DP=242;Dels=0.00;FS=35.850;HaplotypeScore=45.9437;MLEAC=1;MLEAF=0.500;MQ=47.82;MQ0=2;MQRankSum=-3.656;QD=0.45;ReadPosRankSum=-5.948;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:175,67:242:99:138,0,3243 chrXVI 942573 . C G 7796.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=565;Dels=0.00;FS=6.702;HaplotypeScore=89.5695;MLEAC=1;MLEAF=0.500;MQ=33.66;MQ0=9;MQRankSum=8.361;QD=13.80;ReadPosRankSum=10.267;SB=-1.789e+03 GT:AD:DP:GQ:PL 0/1:137,426:565:99:7796,0,639 chrXVI 942580 . T G 7403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.435;DP=594;Dels=0.00;FS=1.384;HaplotypeScore=101.5916;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=10;MQRankSum=7.765;QD=12.46;ReadPosRankSum=7.381;SB=-2.073e+03 GT:AD:DP:GQ:PL 0/1:155,438:593:99:7403,0,1250 chrXVI 942589 . G A 10703.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DP=652;Dels=0.00;FS=15.597;HaplotypeScore=61.1716;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=10;MQRankSum=7.072;QD=16.42;ReadPosRankSum=0.342;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:33,612:652:99:10703,1067,0 chrXVI 942644 . C T 3400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DP=705;Dels=0.00;FS=4.431;HaplotypeScore=58.1915;MLEAC=1;MLEAF=0.500;MQ=42.89;MQ0=6;MQRankSum=2.974;QD=4.82;ReadPosRankSum=0.750;SB=-1.569e+03 GT:AD:DP:GQ:PL 0/1:467,237:705:99:3400,0,8197 chrXVI 942767 . G A 485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.451;DP=611;Dels=0.00;FS=111.870;HaplotypeScore=268.8609;MLEAC=1;MLEAF=0.500;MQ=34.64;MQ0=35;MQRankSum=-6.464;QD=0.79;ReadPosRankSum=2.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:482,127:611:99:515,0,7689 chrXVI 942826 . C G 9353.01 filter AC=2;AF=1.00;AN=2;DP=458;Dels=0.00;FS=0.000;HaplotypeScore=45.4103;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=20.42;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,448:458:99:9353,955,0 chrXVI 942869 . T C 1204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.583;DP=228;Dels=0.00;FS=5.251;HaplotypeScore=30.4517;MLEAC=1;MLEAF=0.500;MQ=40.56;MQ0=29;MQRankSum=-0.577;QD=5.28;ReadPosRankSum=-0.195;SB=-5.620e+02 GT:AD:DP:GQ:PL 0/1:134,90:228:99:1234,0,1801 chrXVI 942936 . G A 673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.659;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=64;MQRankSum=-0.332;QD=4.58;ReadPosRankSum=-0.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,50:147:99:703,0,474 chrXVI 943050 . C A 358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=22;MQRankSum=0.122;QD=4.71;ReadPosRankSum=0.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,33:76:99:388,0,549 chrXVI 946221 . G A 12.37 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DP=161;Dels=0.00;FS=13.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=3.39;MQ0=149;MQRankSum=2.041;QD=0.08;ReadPosRankSum=0.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,18:161:13:42,0,13 chrXVI 946234 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=3.36;MQ0=122;QD=0.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:93,33:128:9:73,9,0 chrXVI 946244 . G A 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.988;DP=94;Dels=0.00;FS=10.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=3.92;MQ0=88;MQRankSum=1.537;QD=0.44;ReadPosRankSum=1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:83,11:94:9:73,9,0 chrXVI 946274 . A G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.779;DP=262;Dels=0.00;FS=10.630;HaplotypeScore=25.9718;MLEAC=2;MLEAF=1.00;MQ=5.95;MQ0=156;MQRankSum=2.933;QD=0.16;ReadPosRankSum=-0.125;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:251,7:262:9:73,9,0 chrXVI 946297 . T G 64.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.288;DP=354;Dels=0.00;FS=10.449;HaplotypeScore=3.9502;MLEAC=1;MLEAF=0.500;MQ=5.99;MQ0=210;MQRankSum=0.497;QD=0.18;ReadPosRankSum=-3.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:289,65:354:4:94,0,4 chrXVI 946395 . G A 79.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.344;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=18.8948;MLEAC=2;MLEAF=1.00;MQ=4.71;MQ0=239;MQRankSum=0.044;QD=0.26;ReadPosRankSum=3.423;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:174,132:306:15:112,15,0 chrXVI 946401 . A G 79.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.203;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=20.4721;MLEAC=2;MLEAF=1.00;MQ=4.78;MQ0=223;MQRankSum=1.521;QD=0.28;ReadPosRankSum=3.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:206,81:287:15:112,15,0